Query 048606
Match_columns 276
No_of_seqs 184 out of 674
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 99.9 3.4E-28 7.3E-33 214.4 7.6 111 1-113 94-204 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 4.5E-24 9.7E-29 184.1 10.7 103 1-107 94-196 (196)
3 TIGR00993 3a0901s04IAP86 chlor 99.1 1.2E-10 2.7E-15 119.8 6.7 65 5-70 218-287 (763)
4 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1E-08 2.2E-13 97.5 10.2 95 1-96 131-245 (313)
5 cd01853 Toc34_like Toc34-like 96.5 0.0021 4.6E-08 59.1 3.6 88 2-94 128-239 (249)
6 PF03904 DUF334: Domain of unk 85.5 32 0.00069 32.2 14.1 75 172-255 67-151 (230)
7 PF09726 Macoilin: Transmembra 80.6 29 0.00062 37.1 12.8 62 183-244 491-573 (697)
8 PTZ00266 NIMA-related protein 79.8 35 0.00075 38.1 13.4 9 54-62 270-278 (1021)
9 PF12808 Mto2_bdg: Micro-tubul 61.3 29 0.00063 25.4 5.3 44 194-237 7-50 (52)
10 PF07798 DUF1640: Protein of u 54.1 1.5E+02 0.0032 25.8 15.7 46 217-262 121-166 (177)
11 KOG1838 Alpha/beta hydrolase [ 51.7 21 0.00045 35.9 4.4 42 23-73 123-164 (409)
12 PLN02804 chalcone isomerase 47.9 19 0.00042 32.9 3.3 33 1-33 115-148 (206)
13 PF13768 VWA_3: von Willebrand 47.4 42 0.00092 27.3 5.0 26 10-35 83-108 (155)
14 PF15188 CCDC-167: Coiled-coil 46.1 1.2E+02 0.0026 24.2 7.1 31 217-247 37-67 (85)
15 PF13519 VWA_2: von Willebrand 45.9 76 0.0017 25.3 6.2 28 9-36 84-112 (172)
16 PLN02559 chalcone--flavonone i 45.3 24 0.00053 32.9 3.5 34 1-34 121-155 (230)
17 PRK06569 F0F1 ATP synthase sub 43.9 2.3E+02 0.0049 24.9 12.2 91 169-275 62-152 (155)
18 PF09726 Macoilin: Transmembra 42.6 3.2E+02 0.0069 29.4 11.6 30 190-219 487-516 (697)
19 PF14114 DUF4286: Domain of un 42.5 26 0.00056 27.9 2.9 30 41-70 63-92 (98)
20 PF05529 Bap31: B-cell recepto 42.2 2.3E+02 0.0051 24.6 9.3 33 216-248 154-186 (192)
21 KOG4403 Cell surface glycoprot 41.7 2.1E+02 0.0045 29.7 9.5 18 149-166 258-275 (575)
22 cd01465 vWA_subgroup VWA subgr 40.7 80 0.0017 25.7 5.6 26 10-36 84-109 (170)
23 KOG0163 Myosin class VI heavy 40.1 5.8E+02 0.013 28.6 17.7 31 26-62 753-783 (1259)
24 PF09744 Jnk-SapK_ap_N: JNK_SA 38.0 2.3E+02 0.005 24.8 8.3 11 54-64 11-21 (158)
25 PF01608 I_LWEQ: I/LWEQ domain 37.8 50 0.0011 28.9 4.1 31 220-250 122-152 (152)
26 COG5003 Mu-like prophage prote 37.3 66 0.0014 28.2 4.7 41 3-49 2-42 (151)
27 PF06200 tify: tify domain; I 36.4 40 0.00086 22.8 2.6 23 61-89 11-33 (36)
28 PF08915 tRNA-Thr_ED: Archaea- 34.8 90 0.002 27.1 5.1 78 19-99 30-109 (138)
29 PF00038 Filament: Intermediat 32.2 4.1E+02 0.0089 24.5 11.4 32 169-200 173-204 (312)
30 PF00249 Myb_DNA-binding: Myb- 31.1 44 0.00096 22.7 2.2 21 1-21 2-22 (48)
31 PLN03086 PRLI-interacting fact 29.8 2.1E+02 0.0046 30.1 7.8 21 219-239 31-51 (567)
32 PRK10884 SH3 domain-containing 29.3 4.4E+02 0.0095 24.0 12.7 20 225-244 141-160 (206)
33 TIGR02643 T_phosphoryl thymidi 28.8 1.5E+02 0.0032 30.2 6.3 99 4-102 212-324 (437)
34 cd01453 vWA_transcription_fact 26.2 3.2E+02 0.0069 23.6 7.3 13 23-35 107-119 (183)
35 cd01840 SGNH_hydrolase_yrhL_li 25.0 3.8E+02 0.0083 21.8 8.1 79 9-104 36-115 (150)
36 PHA02571 a-gt.4 hypothetical p 24.4 3.7E+02 0.008 22.6 6.8 44 208-254 29-72 (109)
37 PF07045 DUF1330: Protein of u 24.1 81 0.0017 22.9 2.7 26 42-72 3-28 (65)
38 KOG1029 Endocytic adaptor prot 23.6 8.6E+02 0.019 27.3 10.9 16 56-71 273-288 (1118)
39 COG2452 Predicted site-specifi 22.4 2E+02 0.0044 26.3 5.3 56 24-93 114-169 (193)
40 cd01455 vWA_F11C1-5a_type Von 22.4 3.8E+02 0.0081 24.3 7.1 74 10-104 96-172 (191)
41 COG2433 Uncharacterized conser 22.0 1E+03 0.022 25.7 11.8 26 221-246 479-504 (652)
42 KOG0804 Cytoplasmic Zn-finger 21.7 9.2E+02 0.02 25.1 13.6 42 192-237 390-431 (493)
43 TIGR00334 5S_RNA_mat_M5 ribonu 21.6 2E+02 0.0044 25.8 5.1 45 9-71 36-80 (174)
44 PF00769 ERM: Ezrin/radixin/mo 20.9 6.7E+02 0.015 23.2 14.6 28 223-250 89-116 (246)
45 PF08645 PNK3P: Polynucleotide 20.7 3.4E+02 0.0074 23.1 6.3 52 10-69 34-87 (159)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.95 E-value=3.4e-28 Score=214.37 Aligned_cols=111 Identities=42% Similarity=0.697 Sum_probs=97.8
Q ss_pred CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccch
Q 048606 1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRT 80 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~ 80 (276)
+|||.+|+.+++.|..+||+++|+|+|||||++|.+.+ .++++||.+.+|..|++|+++||||||+|||++.+..+..
T Consensus 94 ~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~ 171 (212)
T PF04548_consen 94 GRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDE 171 (212)
T ss_dssp TB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhH
Confidence 58999999999999999999999999999999999998 6799999854577899999999999999999954443457
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCChHHHHHHHhh
Q 048606 81 EQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVE 113 (276)
Q Consensus 81 ~QV~ELL~kIe~mV~eNgG~~YTnemf~eae~e 113 (276)
.||.+||++|+.||..|||.|||+++|+++++.
T Consensus 172 ~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 172 SQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp HHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999955
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.91 E-value=4.5e-24 Score=184.11 Aligned_cols=103 Identities=50% Similarity=0.823 Sum_probs=96.1
Q ss_pred CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccch
Q 048606 1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRT 80 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~ 80 (276)
++||++|..+++.|+++||+.+++|+|||||++|+|.+ .++++|+. .++..|+.|+++||+|||+|||+.+ .....
T Consensus 94 ~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~-~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~ 169 (196)
T cd01852 94 GRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLE-NSCEALKRLLEKCGGRYVAFNNKAK-GEEQE 169 (196)
T ss_pred CCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHH-hccHHHHHHHHHhCCeEEEEeCCCC-cchhH
Confidence 36899999999999999999999999999999999988 79999999 4678999999999999999999986 44668
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCChHHH
Q 048606 81 EQVQQLLSLVNAVNVKNGGQPYTNEFF 107 (276)
Q Consensus 81 ~QV~ELL~kIe~mV~eNgG~~YTnemf 107 (276)
.||.+||++|+.|+.+|||.|||+.||
T Consensus 170 ~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 170 QQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999999999999999886
No 3
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=1.2e-10 Score=119.81 Aligned_cols=65 Identities=9% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCc-----hhcHHHHhccCCCchHHHHHHHcCCceEEEe
Q 048606 5 QEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDN-----EKTLEDYLGLECPKPLKEILKLCDHRCVLFD 70 (276)
Q Consensus 5 eEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~-----~~tlEdyL~~~~~~~LqeLIekCGgRyhvFN 70 (276)
.++..+++.|+.+||+++|+||||||||+|.+..+ +.|+++||. .++..||.+|..|+||+++||
T Consensus 218 ~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~-~rs~~Lq~~Irq~~g~~~l~n 287 (763)
T TIGR00993 218 SNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVA-QRSHIVQQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHh-hChHHHHHHHHHhcCcceecc
Confidence 37889999999999999999999999999999632 368999998 589999999999999999999
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.88 E-value=1e-08 Score=97.51 Aligned_cols=95 Identities=17% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCC-----------ceEEE
Q 048606 1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDH-----------RCVLF 69 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGg-----------RyhvF 69 (276)
+|+|+.|..+++.|+..||+.+|+|+||||||+|.+..++.++++|+. .++..|+.+|+.|-+ -+++.
T Consensus 131 ~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~-~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lv 209 (313)
T TIGR00991 131 YRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS-KRSEALLRVIHSGAGLKKRDYQDFPIPVALV 209 (313)
T ss_pred ccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH-hcHHHHHHHHHHHhcccccccccccCCEEEE
Confidence 378999999999999999999999999999999988544589999999 489999999998764 22555
Q ss_pred ecCC--c--Ccccc-----hhHHHHHHHHHHHHHHH
Q 048606 70 DNKT--K--YKVKR-----TEQVQQLLSLVNAVNVK 96 (276)
Q Consensus 70 NNK~--~--~~~~q-----~~QV~ELL~kIe~mV~e 96 (276)
.|.. . ...++ ...+..||..|-.|+..
T Consensus 210 en~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~ 245 (313)
T TIGR00991 210 ENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN 245 (313)
T ss_pred ecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence 6632 1 11111 46889999999888653
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.55 E-value=0.0021 Score=59.11 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchh-----cHHHHhccCCCchHHHHHHHcC----------Cce
Q 048606 2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEK-----TLEDYLGLECPKPLKEILKLCD----------HRC 66 (276)
Q Consensus 2 RFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~-----tlEdyL~~~~~~~LqeLIekCG----------gRy 66 (276)
|++..|..+++.|...||..+|+|+||||||.|.+..++. +.+.|.. .++.++..|. ...
T Consensus 128 r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~pv 202 (249)
T cd01853 128 RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVA-----QRSHIVQQAIQQAAGDPRLENPV 202 (249)
T ss_pred CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHH-----HHHHHHHHHhhhhccCccccCCE
Confidence 6889999999999999999999999999999998754322 2333332 2444444442 356
Q ss_pred EEEecCCc----Ccccc-----hhHHHHHHHHHHHHH
Q 048606 67 VLFDNKTK----YKVKR-----TEQVQQLLSLVNAVN 94 (276)
Q Consensus 67 hvFNNK~~----~~~~q-----~~QV~ELL~kIe~mV 94 (276)
++.+|... ...++ ...+..||..+-.|.
T Consensus 203 ~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~ 239 (249)
T cd01853 203 SLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVK 239 (249)
T ss_pred EEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHH
Confidence 77777532 11111 357778887776664
No 6
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=85.47 E-value=32 Score=32.17 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhcHH
Q 048606 172 ESNEYQIKRITEMVESNLKETTTRLEQQ----------LAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETED 241 (276)
Q Consensus 172 ~~~~~~~~~~~~~~e~~l~~~~~~le~~----------l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~~~~~ 241 (276)
..++.+++.|+. +|.+|+...-.. ...+.-.+.+.+..... +..+|.++++.+++.-++...
T Consensus 67 d~reK~~~~I~s----sL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~----~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 67 DIREKNLKEIKS----SLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNI----AQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665 455554444211 12233445555544444 445699999999999999554
Q ss_pred HhhhhhHHhhhhhh
Q 048606 242 QMHESYEDQIKRIT 255 (276)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (276)
-|+.|..-.+.++
T Consensus 139 -~~E~y~k~~k~~~ 151 (230)
T PF03904_consen 139 -SHEKYQKRQKSMY 151 (230)
T ss_pred -HHHHHHHHHHHHH
Confidence 6777877777774
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.63 E-value=29 Score=37.08 Aligned_cols=62 Identities=32% Similarity=0.439 Sum_probs=42.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHH------------------HhhcHHHHHHHHHHHHHHHhhcHH
Q 048606 183 EMVESNLKETT---TRLEQQLAEEQVARLKGEEVAQVA------------------QRKSNDKIHKLRDNLESAQRETED 241 (276)
Q Consensus 183 ~~~e~~l~~~~---~~le~~l~~eq~arl~~e~~~~~~------------------~~~s~~~i~~l~~~le~a~~~~~~ 241 (276)
..||.+|++-. ..+|+||.+|+.+|.++|..|..+ ...-+.|+.+||.+|-..+.....
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666543 557999999999999887776643 334567788888877765555444
Q ss_pred Hhh
Q 048606 242 QMH 244 (276)
Q Consensus 242 ~~~ 244 (276)
+-.
T Consensus 571 ~e~ 573 (697)
T PF09726_consen 571 LES 573 (697)
T ss_pred HHH
Confidence 433
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=79.81 E-value=35 Score=38.14 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.6
Q ss_pred hHHHHHHHc
Q 048606 54 PLKEILKLC 62 (276)
Q Consensus 54 ~LqeLIekC 62 (276)
.|..||..|
T Consensus 270 eL~dLI~~~ 278 (1021)
T PTZ00266 270 ELNILIKNL 278 (1021)
T ss_pred HHHHHHHHH
Confidence 455555554
No 9
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=61.29 E-value=29 Score=25.35 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 048606 194 TRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQR 237 (276)
Q Consensus 194 ~~le~~l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~ 237 (276)
.-|+.+|..|+.+|.-.-.-|.....+...++..|+..|+..+.
T Consensus 7 ~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 7 EELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888889888888888899999999999999988653
No 10
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.09 E-value=1.5e+02 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=22.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHhhcHHHhhhhhHHhhhhhhHHHHHHH
Q 048606 217 AQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRITEVVFFML 262 (276)
Q Consensus 217 ~~~~s~~~i~~l~~~le~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (276)
.....+..|..++-++..--....-.+....-+.++....++|-++
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~ 166 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGCV 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455444444443333344444455666776665555443
No 11
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=51.68 E-value=21 Score=35.94 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=33.8
Q ss_pred cceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCC
Q 048606 23 FDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKT 73 (276)
Q Consensus 23 ~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~ 73 (276)
-...+|||-+| +.+ .|-+.||+. |-....+=|.|+||||++.
T Consensus 123 ~~~P~vvilpG--ltg--~S~~~YVr~-----lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 123 GTDPIVVILPG--LTG--GSHESYVRH-----LVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCCcEEEEecC--CCC--CChhHHHHH-----HHHHHHhCCcEEEEECCCC
Confidence 45578888888 555 688899983 6778888999999999986
No 12
>PLN02804 chalcone isomerase
Probab=47.94 E-value=19 Score=32.93 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHHHHHHhchhhc-ceeEEEEecC
Q 048606 1 SRFSQEEEAAVHHLQTLFGKKIF-DYMIVVFTGG 33 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~a~-kytIVLFT~g 33 (276)
|.||++|..+|+.+...|.+.-+ ..++|+||+-
T Consensus 115 ~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~~ 148 (206)
T PLN02804 115 DKYEEEEEEALEKVVEFFQSKYFKKNSIITYHFP 148 (206)
T ss_pred CCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEec
Confidence 46899999999999999987765 5899999974
No 13
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=47.38 E-value=42 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHHHHhchhhcceeEEEEecCCC
Q 048606 10 AVHHLQTLFGKKIFDYMIVVFTGGDD 35 (276)
Q Consensus 10 ale~Iq~lFG~~a~kytIVLFT~gDe 35 (276)
+|+.....+.+......|||||-|..
T Consensus 83 aL~~a~~~~~~~~~~~~IilltDG~~ 108 (155)
T PF13768_consen 83 ALRAALALLQRPGCVRAIILLTDGQP 108 (155)
T ss_pred HHHHHHHhcccCCCccEEEEEEeccC
Confidence 44444444433455788999997764
No 14
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=46.06 E-value=1.2e+02 Score=24.20 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=20.0
Q ss_pred HHhhcHHHHHHHHHHHHHHHhhcHHHhhhhh
Q 048606 217 AQRKSNDKIHKLRDNLESAQRETEDQMHESY 247 (276)
Q Consensus 217 ~~~~s~~~i~~l~~~le~a~~~~~~~~~~~~ 247 (276)
+...-.+|...|...+..-+.+..-++++..
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 3333446677777777777777777777544
No 15
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=45.95 E-value=76 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHHHHHHhchh-hcceeEEEEecCCCC
Q 048606 9 AAVHHLQTLFGKK-IFDYMIVVFTGGDDL 36 (276)
Q Consensus 9 ~ale~Iq~lFG~~-a~kytIVLFT~gDeL 36 (276)
.++....++|... ..+..|||||.|.+-
T Consensus 84 ~al~~a~~~~~~~~~~~~~iv~iTDG~~~ 112 (172)
T PF13519_consen 84 DALQEAAKMLASSDNRRRAIVLITDGEDN 112 (172)
T ss_dssp HHHHHHHHHHHC-SSEEEEEEEEES-TTH
T ss_pred HHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 4455556666544 477899999988543
No 16
>PLN02559 chalcone--flavonone isomerase
Probab=45.31 E-value=24 Score=32.95 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHHHHhchhhc-ceeEEEEecCC
Q 048606 1 SRFSQEEEAAVHHLQTLFGKKIF-DYMIVVFTGGD 34 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~a~-kytIVLFT~gD 34 (276)
|.||++|..+|+.+...|-+..+ .-+.|+||+-.
T Consensus 121 g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp 155 (230)
T PLN02559 121 GIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSP 155 (230)
T ss_pred CCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECC
Confidence 56899999999999999988766 58999999883
No 17
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.92 E-value=2.3e+02 Score=24.95 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=51.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhcHHHhhhhhH
Q 048606 169 QMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYE 248 (276)
Q Consensus 169 ~~~~~~~~~~~~~~~~~e~~l~~~~~~le~~l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~~~~~~~~~~~~ 248 (276)
.+...|+.+|+.-.....+...+|..++......+ .+.++++. +.-|.++...-....+ ..+.+|.
T Consensus 62 ~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~-~~~~ea~L------------~~~~~~~~~~~~~~~~-~~~~~~~ 127 (155)
T PRK06569 62 KLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIK-KKNLEQDL------------KNSINQNIEDINLAAK-QFRTNKS 127 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------------HHHHHHHHHHHHHHHH-HHHHhHH
Confidence 66677888888888888777777777776664333 33333333 1122222222222222 5666777
Q ss_pred HhhhhhhHHHHHHHHHhhhcccccccc
Q 048606 249 DQIKRITEVVFFMLLLLTSKYDMHIVH 275 (276)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (276)
++...++.-+. -=++..+-||...|
T Consensus 128 ~~~i~~~~~i~--~k~~~~~~~~~~~~ 152 (155)
T PRK06569 128 EAIIKLAVNII--EKIAGTKADMNLLQ 152 (155)
T ss_pred HHHHHHHHHHH--HHHhCccccHHHHh
Confidence 77776655444 34455566776554
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.57 E-value=3.2e+02 Score=29.43 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 048606 190 KETTTRLEQQLAEEQVARLKGEEVAQVAQR 219 (276)
Q Consensus 190 ~~~~~~le~~l~~eq~arl~~e~~~~~~~~ 219 (276)
|.++..||++|++|+.+|...|...++.++
T Consensus 487 Kq~l~~LEkrL~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 487 KQSLQQLEKRLAEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999888877665554
No 19
>PF14114 DUF4286: Domain of unknown function (DUF4286)
Probab=42.54 E-value=26 Score=27.91 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.0
Q ss_pred hcHHHHhccCCCchHHHHHHHcCCceEEEe
Q 048606 41 KTLEDYLGLECPKPLKEILKLCDHRCVLFD 70 (276)
Q Consensus 41 ~tlEdyL~~~~~~~LqeLIekCGgRyhvFN 70 (276)
.++..|+...+|.--+++..++|+++..|.
T Consensus 63 e~l~~y~~~~~~~l~~e~~~~Fg~k~~~F~ 92 (98)
T PF14114_consen 63 EDLERYYEEHAPKLREEGSKKFGDKVLAFR 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 679999986667766778899999999995
No 20
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.21 E-value=2.3e+02 Score=24.65 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=26.6
Q ss_pred HHHhhcHHHHHHHHHHHHHHHhhcHHHhhhhhH
Q 048606 216 VAQRKSNDKIHKLRDNLESAQRETEDQMHESYE 248 (276)
Q Consensus 216 ~~~~~s~~~i~~l~~~le~a~~~~~~~~~~~~~ 248 (276)
+.-.+.+++|.+|+++|++++.+.+.+.+.+..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999988888776654
No 21
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.71 E-value=2.1e+02 Score=29.67 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 048606 149 NDEIRKLKENLKRAQREI 166 (276)
Q Consensus 149 ~eel~~~kk~~~~~~~~~ 166 (276)
+..+..+.++|++||.|.
T Consensus 258 Eqsl~dlQk~Lekar~e~ 275 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQ 275 (575)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345788888888887663
No 22
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=40.69 E-value=80 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=14.7
Q ss_pred HHHHHHHHhchhhcceeEEEEecCCCC
Q 048606 10 AVHHLQTLFGKKIFDYMIVVFTGGDDL 36 (276)
Q Consensus 10 ale~Iq~lFG~~a~kytIVLFT~gDeL 36 (276)
++..+...+++... -.|||||-|..-
T Consensus 84 a~~~~~~~~~~~~~-~~ivl~TDG~~~ 109 (170)
T cd01465 84 GYQEAQKHFVPGGV-NRILLATDGDFN 109 (170)
T ss_pred HHHHHHhhcCCCCe-eEEEEEeCCCCC
Confidence 34444444443322 458899999754
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.08 E-value=5.8e+02 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=19.5
Q ss_pred eEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHc
Q 048606 26 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLC 62 (276)
Q Consensus 26 tIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekC 62 (276)
|=|.|+-|. + ..++..++ .+|..+-+||.+.
T Consensus 753 TKVFFr~GK-F----aEFDqiMk-sDPe~m~~lv~kV 783 (1259)
T KOG0163|consen 753 TKVFFRPGK-F----AEFDQIMK-SDPETMLELVAKV 783 (1259)
T ss_pred eeEeecCcc-h----HHHHHHHh-cCHHHHHHHHHHH
Confidence 667777654 3 23666666 4677777777664
No 24
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.03 E-value=2.3e+02 Score=24.84 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=5.7
Q ss_pred hHHHHHHHcCC
Q 048606 54 PLKEILKLCDH 64 (276)
Q Consensus 54 ~LqeLIekCGg 64 (276)
.+..||..||.
T Consensus 11 EfE~lId~~G~ 21 (158)
T PF09744_consen 11 EFERLIDRYGE 21 (158)
T ss_pred HHHHHHHHhCh
Confidence 34555555553
No 25
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=37.81 E-value=50 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=22.5
Q ss_pred hcHHHHHHHHHHHHHHHhhcHHHhhhhhHHh
Q 048606 220 KSNDKIHKLRDNLESAQRETEDQMHESYEDQ 250 (276)
Q Consensus 220 ~s~~~i~~l~~~le~a~~~~~~~~~~~~~~~ 250 (276)
.+-.+|.+|...|+.|+...-.+|+.+|++|
T Consensus 122 e~Qv~iL~lE~eLe~ar~kL~~lRk~~Y~~~ 152 (152)
T PF01608_consen 122 EAQVRILKLEKELEKARKKLAELRKAHYHNQ 152 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445689999999999999999999999876
No 26
>COG5003 Mu-like prophage protein gp37 [General function prediction only]
Probab=37.26 E-value=66 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhcc
Q 048606 3 FSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL 49 (276)
Q Consensus 3 FTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~ 49 (276)
+++-++..+..|...||. +..=||||+.+..+ ..+...|++
T Consensus 2 IaeteqA~~ari~~~~G~----mvr~VdTypGewdd--s~La~~v~n 42 (151)
T COG5003 2 IAETEQAYIARIREYFGN----MVRTVDTYPGEWDD--SVLAGQVHN 42 (151)
T ss_pred cchHHHHHHHHHHHHhhh----eeEeeeccCCcccc--HHHHHHhhc
Confidence 467789999999999997 77789999999987 778888873
No 27
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=36.37 E-value=40 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=17.0
Q ss_pred HcCCceEEEecCCcCcccchhHHHHHHHH
Q 048606 61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSL 89 (276)
Q Consensus 61 kCGgRyhvFNNK~~~~~~q~~QV~ELL~k 89 (276)
-++|+.||||+-+. .++.++|..
T Consensus 11 fY~G~V~Vfd~v~~------~Ka~~im~l 33 (36)
T PF06200_consen 11 FYGGQVCVFDDVPP------DKAQEIMLL 33 (36)
T ss_pred EECCEEEEeCCCCH------HHHHHHHHH
Confidence 47899999999865 456666654
No 28
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=34.83 E-value=90 Score=27.06 Aligned_cols=78 Identities=10% Similarity=0.117 Sum_probs=50.0
Q ss_pred chhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCC--cCcccchhHHHHHHHHHHHHHHH
Q 048606 19 GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKT--KYKVKRTEQVQQLLSLVNAVNVK 96 (276)
Q Consensus 19 G~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~--~~~~~q~~QV~ELL~kIe~mV~e 96 (276)
+++.++.++|+||.-+.-++ .+.+..+.+ +-..+.++..+.|-.-+++..-+ +++--.-....++|..++..+..
T Consensus 30 ~~~~~e~alVvF~~VE~~De--~~~~~vv~~-av~eI~~~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~ 106 (138)
T PF08915_consen 30 KEGRMENALVVFIAVEKGDE--ENPEGVVEK-AVEEIKWVAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKS 106 (138)
T ss_dssp GEEEEEEEEEEEEE-BGGGG--G-HHHHHHH-HHHHHHHHHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHH
T ss_pred cccceeeeEEEEEEEcCCCC--CCHHHHHHH-HHHHHHHHHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHh
Confidence 45567899999998876544 566666663 55679999999998766665422 11101125678899999998866
Q ss_pred cCC
Q 048606 97 NGG 99 (276)
Q Consensus 97 NgG 99 (276)
.|.
T Consensus 107 ~g~ 109 (138)
T PF08915_consen 107 RGF 109 (138)
T ss_dssp TT-
T ss_pred CCC
Confidence 654
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.20 E-value=4.1e+02 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048606 169 QMHESNEYQIKRITEMVESNLKETTTRLEQQL 200 (276)
Q Consensus 169 ~~~~~~~~~~~~~~~~~e~~l~~~~~~le~~l 200 (276)
.|+..|+..+......++.-.+..+..+..+.
T Consensus 173 eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~ 204 (312)
T PF00038_consen 173 EIRAQYEEIAQKNREELEEWYQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhhhhhcccccccccccc
Confidence 57777888888888888877777777766655
No 30
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=31.14 E-value=44 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHHHHHHhchh
Q 048606 1 SRFSQEEEAAVHHLQTLFGKK 21 (276)
Q Consensus 1 gRFTeEE~~ale~Iq~lFG~~ 21 (276)
|++|++|...+..+...||.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~ 22 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD 22 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCc
Confidence 579999999999999999987
No 31
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.81 E-value=2.1e+02 Score=30.12 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=10.1
Q ss_pred hhcHHHHHHHHHHHHHHHhhc
Q 048606 219 RKSNDKIHKLRDNLESAQRET 239 (276)
Q Consensus 219 ~~s~~~i~~l~~~le~a~~~~ 239 (276)
+++.++-.+-|+.+|.+++.-
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~ 51 (567)
T PLN03086 31 RKAKEEAAKQREAIEAAQRSR 51 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555443
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.33 E-value=4.4e+02 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhcHHHhh
Q 048606 225 IHKLRDNLESAQRETEDQMH 244 (276)
Q Consensus 225 i~~l~~~le~a~~~~~~~~~ 244 (276)
...|++.|+.++.+++....
T Consensus 141 n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555433
No 33
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=28.76 E-value=1.5e+02 Score=30.24 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCc--hhc-----HHHHhccC-CCchHHHHHHHcCCceEEEecCCcC
Q 048606 4 SQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDN--EKT-----LEDYLGLE-CPKPLKEILKLCDHRCVLFDNKTKY 75 (276)
Q Consensus 4 TeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~--~~t-----lEdyL~~~-~~~~LqeLIekCGgRyhvFNNK~~~ 75 (276)
|.++...|.....--|..+-.++.++.|.+|..=+. |.. .-++|+.. .|.+|.+++-..++.-..+..+..+
T Consensus 212 ~~~~A~~LA~~mv~ig~~~g~~~~a~iTdm~qPlG~~iGnalEv~Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g~~~~ 291 (437)
T TIGR02643 212 TYEESEELARSLVDVANGAGVRTTALITDMNQPLASAAGNAVEVRNAVDFLTGEKRNPRLEDVTMALAAEMLVSGGLAAD 291 (437)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHhCCCCCC
Confidence 567778888888888999999999999999887432 112 22466533 5889999999999988888887653
Q ss_pred cccchhHHHH------HHHHHHHHHHHcCCCCC
Q 048606 76 KVKRTEQVQQ------LLSLVNAVNVKNGGQPY 102 (276)
Q Consensus 76 ~~~q~~QV~E------LL~kIe~mV~eNgG~~Y 102 (276)
..+-..-..+ -|++...||..-||.+.
T Consensus 292 ~~~~~~~~~~~l~sG~Al~kF~~~v~aQGGd~~ 324 (437)
T TIGR02643 292 EAEARAKLQAVLDSGRAAERFARMVAALGGPAD 324 (437)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCch
Confidence 2111233333 35788889988888664
No 34
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.16 E-value=3.2e+02 Score=23.59 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=8.4
Q ss_pred cceeEEEEecCCC
Q 048606 23 FDYMIVVFTGGDD 35 (276)
Q Consensus 23 ~kytIVLFT~gDe 35 (276)
-+..|||+|.+.+
T Consensus 107 ~~~iiil~sd~~~ 119 (183)
T cd01453 107 SREVLIIFSSLST 119 (183)
T ss_pred ceEEEEEEcCCCc
Confidence 3557888886554
No 35
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=24.97 E-value=3.8e+02 Score=21.84 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=46.0
Q ss_pred HHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCC-ceEEEecCCcCcccchhHHHHHH
Q 048606 9 AAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDH-RCVLFDNKTKYKVKRTEQVQQLL 87 (276)
Q Consensus 9 ~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGg-RyhvFNNK~~~~~~q~~QV~ELL 87 (276)
.++..+..++........+||+.++-+.. | ...|+.+++.++. +-++|=+-.. . .....++-
T Consensus 36 ~~~~~l~~~~~~~~~~d~vvi~lGtNd~~--------~-----~~nl~~ii~~~~~~~~ivlv~~~~-~---~~~~~~~n 98 (150)
T cd01840 36 EAPDLIRQLKDSGKLRKTVVIGLGTNGPF--------T-----KDQLDELLDALGPDRQVYLVNPHV-P---RPWEPDVN 98 (150)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEecCCCCC--------C-----HHHHHHHHHHcCCCCEEEEEECCC-C---cchHHHHH
Confidence 45666666665444556777776665431 1 3457888988884 5565544322 2 23344555
Q ss_pred HHHHHHHHHcCCCCCCh
Q 048606 88 SLVNAVNVKNGGQPYTN 104 (276)
Q Consensus 88 ~kIe~mV~eNgG~~YTn 104 (276)
..+.++.+.+.+-+|-+
T Consensus 99 ~~~~~~a~~~~~v~~id 115 (150)
T cd01840 99 AYLLDAAKKYKNVTIID 115 (150)
T ss_pred HHHHHHHHHCCCcEEec
Confidence 66677777775555544
No 36
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=24.40 E-value=3.7e+02 Score=22.57 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhcHHHhhhhhHHhhhhh
Q 048606 208 LKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRI 254 (276)
Q Consensus 208 l~~e~~~~~~~~~s~~~i~~l~~~le~a~~~~~~~~~~~~~~~~~~~ 254 (276)
.++++.|+.--++-.-||.+|+.+-|.|--.+. ++.|.=-|+++
T Consensus 29 ~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~N---k~~Y~YAI~KL 72 (109)
T PHA02571 29 AEAEKKAAKILKKNRREIKRLKKHAEEALFDNN---KEQYVYAIKKL 72 (109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 457888999999999999999999888754432 34455455554
No 37
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=24.05 E-value=81 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=19.2
Q ss_pred cHHHHhccCCCchHHHHHHHcCCceEEEecC
Q 048606 42 TLEDYLGLECPKPLKEILKLCDHRCVLFDNK 72 (276)
Q Consensus 42 tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK 72 (276)
.+.+|... ...+|.++|||+++.+..
T Consensus 3 ~~~~Y~~~-----~~~~l~~~GG~~l~~~~~ 28 (65)
T PF07045_consen 3 AYQEYREA-----VPPILEKYGGRVLARGGE 28 (65)
T ss_dssp HHHHHHHH-----HHHHHHHTT-EEEEECEE
T ss_pred HHHHHHHH-----HHHHHHHcCCEEEEECCc
Confidence 46677763 568999999999998654
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=8.6e+02 Score=27.34 Aligned_cols=16 Identities=6% Similarity=-0.050 Sum_probs=8.6
Q ss_pred HHHHHHcCCceEEEec
Q 048606 56 KEILKLCDHRCVLFDN 71 (276)
Q Consensus 56 qeLIekCGgRyhvFNN 71 (276)
.++|--|+.+.---||
T Consensus 273 ~E~Vpp~~r~~rs~~s 288 (1118)
T KOG1029|consen 273 PELVPPSFRSSRSANS 288 (1118)
T ss_pred hhhcCcccccccCCCC
Confidence 3666666655444333
No 39
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=22.43 E-value=2e+02 Score=26.32 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.0
Q ss_pred ceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccchhHHHHHHHHHHHH
Q 048606 24 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAV 93 (276)
Q Consensus 24 kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~~QV~ELL~kIe~m 93 (276)
.-..|++||.|.|.- -. -..+..+...+|-+.++.|+...++ +.=|.+|++.+-.+
T Consensus 114 ~V~rVvV~ykDRL~R--FG---------fe~le~~~~a~~~eivvv~~~e~~~---eELveDlisIltsf 169 (193)
T COG2452 114 SVRRVVVSYKDRLNR--FG---------FELVEAVCKAHNVEIVVVNQEDKDS---EELVEDLVSILTSF 169 (193)
T ss_pred ceeEEEEEccchHhH--Hh---------HHHHHHHHHhcCcEEEEecCCCCCH---HHHHHHHHHHHHHH
Confidence 346788899999864 11 2346789999999999999876543 34455555544433
No 40
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.39 E-value=3.8e+02 Score=24.28 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHHh--chhhcceeEEEEecCCCCCCchhcHHHHhccCCCchH-HHHHHHcCCceEEEecCCcCcccchhHHHHH
Q 048606 10 AVHHLQTLF--GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL-KEILKLCDHRCVLFDNKTKYKVKRTEQVQQL 86 (276)
Q Consensus 10 ale~Iq~lF--G~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~L-qeLIekCGgRyhvFNNK~~~~~~q~~QV~EL 86 (276)
+|..=.+.| .+++-.+.|||+|-|.+-.+ . + .|..+ ..|-...|=+.|.+---+.+ .+.
T Consensus 96 Ai~~av~rl~~~~~a~~kvvILLTDG~n~~~---~----i---~P~~aAa~lA~~~gV~iytIgiG~~d--------~~~ 157 (191)
T cd01455 96 ATEFAIKELAAKEDFDEAIVIVLSDANLERY---G----I---QPKKLADALAREPNVNAFVIFIGSLS--------DEA 157 (191)
T ss_pred HHHHHHHHHHhcCcCCCcEEEEEeCCCcCCC---C----C---ChHHHHHHHHHhCCCEEEEEEecCCC--------HHH
Confidence 333333444 46677899999999985443 1 1 25543 57777788788777665432 234
Q ss_pred HHHHHHHHHHcCCCCCCh
Q 048606 87 LSLVNAVNVKNGGQPYTN 104 (276)
Q Consensus 87 L~kIe~mV~eNgG~~YTn 104 (276)
|..|-.+ .||++|-.
T Consensus 158 l~~iA~~---tgG~~F~A 172 (191)
T cd01455 158 DQLQREL---PAGKAFVC 172 (191)
T ss_pred HHHHHhC---CCCcEEEe
Confidence 4444433 67888754
No 41
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=1e+03 Score=25.70 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHhhcHHHhhhh
Q 048606 221 SNDKIHKLRDNLESAQRETEDQMHES 246 (276)
Q Consensus 221 s~~~i~~l~~~le~a~~~~~~~~~~~ 246 (276)
-+.+|..|+.+|+......+.+....
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777776666655554443
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.66 E-value=9.2e+02 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 048606 192 TTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQR 237 (276)
Q Consensus 192 ~~~~le~~l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~ 237 (276)
+..+++.+|..++ +..+...+-|.--.+.+.++.+.+..|..
T Consensus 390 k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~~e~~~~~~~ 431 (493)
T KOG0804|consen 390 KLKKCQKELKEER----EENKKLIKNQDVWRGKLKELEEREKEALG 431 (493)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554443 33333334444444445555555444443
No 43
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=21.55 E-value=2e+02 Score=25.79 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEec
Q 048606 9 AAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDN 71 (276)
Q Consensus 9 ~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNN 71 (276)
.+++.|... ..+..|||||.+|.-++ -|. +.|.+.+++=.|+|=.
T Consensus 36 ~~i~~i~~~----~~~rgVIIfTDpD~~Ge---kIR-----------k~i~~~vp~~khafi~ 80 (174)
T TIGR00334 36 ETINLIKKA----QKKQGVIILTDPDFPGE---KIR-----------KKIEQHLPGYENCFIP 80 (174)
T ss_pred HHHHHHHHH----hhcCCEEEEeCCCCchH---HHH-----------HHHHHHCCCCeEEeee
Confidence 345555543 34688999999886554 333 3444456665666655
No 44
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.93 E-value=6.7e+02 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHhhhhhHHh
Q 048606 223 DKIHKLRDNLESAQRETEDQMHESYEDQ 250 (276)
Q Consensus 223 ~~i~~l~~~le~a~~~~~~~~~~~~~~~ 250 (276)
.+|..|.+..++...++....++...-|
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544433
No 45
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=20.70 E-value=3.4e+02 Score=23.09 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=31.0
Q ss_pred HHHHHHHHhchhhcceeEEEEecCCCCCC--chhcHHHHhccCCCchHHHHHHHcCCceEEE
Q 048606 10 AVHHLQTLFGKKIFDYMIVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILKLCDHRCVLF 69 (276)
Q Consensus 10 ale~Iq~lFG~~a~kytIVLFT~gDeLe~--~~~tlEdyL~~~~~~~LqeLIekCGgRyhvF 69 (276)
+++.|..+ ....|.||+||.-+-+.. ...++..+... +..+++..|..+.+|
T Consensus 34 v~~~L~~l---~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~k-----i~~il~~l~ip~~~~ 87 (159)
T PF08645_consen 34 VPEALREL---HKKGYKIVIVTNQSGIGRGMGEKDLENFHEK-----IENILKELGIPIQVY 87 (159)
T ss_dssp HHHHHHHH---HHTTEEEEEEEE-CCCCCTBTCCHHHHHHHH-----HHHHHHHCTS-EEEE
T ss_pred HHHHHHHH---HhcCCeEEEEeCccccccccccchHHHHHHH-----HHHHHHHcCCceEEE
Confidence 45555555 234588888887766654 22456666653 667777777765554
Done!