Query 048608
Match_columns 152
No_of_seqs 190 out of 1240
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.8E-27 2.7E-31 155.5 5.5 61 22-82 2-62 (63)
2 1u3e_M HNH homing endonuclease 95.3 0.00033 1.1E-08 53.3 -5.4 55 5-64 92-146 (174)
3 3igm_B PF14_0633 protein; AP2 93.5 0.029 9.8E-07 38.1 1.7 28 18-48 3-31 (77)
4 1z1b_A Integrase; protein-DNA 80.3 1.7 5.9E-05 34.3 4.2 41 25-70 15-55 (356)
5 1x60_A Sporulation-specific N- 50.4 7.5 0.00026 24.7 1.8 23 46-68 46-68 (79)
6 3jtz_A Integrase; four strande 47.6 37 0.0013 22.6 5.0 43 27-70 29-75 (88)
7 1uta_A FTSN, MSGA, cell divisi 44.3 10 0.00036 24.4 1.7 23 46-68 46-68 (81)
8 1b69_A Protein (integrase); in 39.7 22 0.00074 23.3 2.7 28 20-49 9-36 (69)
9 2ftc_I Mitochondrial ribosomal 33.7 61 0.0021 22.9 4.5 35 34-71 80-114 (118)
10 3ju0_A Phage integrase; four s 30.9 81 0.0028 21.7 4.7 43 27-70 29-75 (108)
11 3j0l_J Ribosomal protein L10; 27.1 2.1E+02 0.0071 22.6 6.9 52 34-89 123-184 (219)
12 3r8s_M 50S ribosomal protein L 23.2 1E+02 0.0035 22.4 4.2 33 34-71 92-125 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=7.8e-27 Score=155.48 Aligned_cols=61 Identities=77% Similarity=1.329 Sum_probs=58.4
Q ss_pred ceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 048608 22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE 82 (152)
Q Consensus 22 ~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~~Nfp~~ 82 (152)
+|+||+++++|||.|+|+++.++|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999998899999999999987789999999999999999999999999999999999975
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=95.29 E-value=0.00033 Score=53.33 Aligned_cols=55 Identities=5% Similarity=-0.054 Sum_probs=38.8
Q ss_pred CcchhhhhhhhcCCCCcceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHH
Q 048608 5 SKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYD 64 (152)
Q Consensus 5 ~~~~~~~~~~~~~~~~S~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD 64 (152)
+..+|.+++.......+ .+||.....++|.|.|.. + +..+||.|+|.+|||++|.
T Consensus 92 t~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 92 TQKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CHHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred CHHHHhhcccccCcccc-eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 45667777665554322 467765334678999988 3 4578999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.52 E-value=0.029 Score=38.08 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCCcceeEeEECC-CCcEEEEEeCCCCCCeEE
Q 048608 18 REEVRYRGVRRRP-WGKFAAEIRDPSRQGARL 48 (152)
Q Consensus 18 ~~~S~yrGV~~~~-~gkw~A~I~~~~~~gk~~ 48 (152)
..+|+|+||++.+ .+.|.|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 4579999999766 5999999887 56653
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=80.30 E-value=1.7 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=30.6
Q ss_pred EeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhh
Q 048608 25 GVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNM 70 (152)
Q Consensus 25 GV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~ 70 (152)
||+.++.|.|..+... +|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778999988755 688999996 8888877665554433
No 5
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=50.44 E-value=7.5 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 048608 46 ARLWLGTFETAEEAARAYDRAAF 68 (152)
Q Consensus 46 k~~~LGtF~t~EeAA~AYD~aa~ 68 (152)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46999999999999988665443
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=47.57 E-value=37 Score=22.57 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=28.8
Q ss_pred EECCCC--cEEEEEeCCCCCCeEEecCCCC--CHHHHHHHHHHHHHhh
Q 048608 27 RRRPWG--KFAAEIRDPSRQGARLWLGTFE--TAEEAARAYDRAAFNM 70 (152)
Q Consensus 27 ~~~~~g--kw~A~I~~~~~~gk~~~LGtF~--t~EeAA~AYD~aa~~~ 70 (152)
.-.++| .|.-+.+...+ -+++-||.|+ |..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk-~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGK-ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTE-EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCe-EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 345554 58888876332 3568899998 5788877776665554
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=44.27 E-value=10 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=18.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 048608 46 ARLWLGTFETAEEAARAYDRAAF 68 (152)
Q Consensus 46 k~~~LGtF~t~EeAA~AYD~aa~ 68 (152)
-+|.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999888665443
No 8
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=39.75 E-value=22 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=21.1
Q ss_pred CcceeEeEECCCCcEEEEEeCCCCCCeEEe
Q 048608 20 EVRYRGVRRRPWGKFAAEIRDPSRQGARLW 49 (152)
Q Consensus 20 ~S~yrGV~~~~~gkw~A~I~~~~~~gk~~~ 49 (152)
..-+.|++.++.|+|++.+.+. .|++.+
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEEE
Confidence 3456789998899999999885 355543
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=33.68 E-value=61 Score=22.92 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhc
Q 048608 34 FAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMR 71 (152)
Q Consensus 34 w~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~ 71 (152)
|.|.|.. .-.-+-++...+++.|..|...|+.++=
T Consensus 80 wva~Vk~---G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA---GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC---CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999976 2233446666889999999999998873
No 10
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=30.94 E-value=81 Score=21.74 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=27.9
Q ss_pred EECCCC--cEEEEEeCCCCCCeEEecCCCC--CHHHHHHHHHHHHHhh
Q 048608 27 RRRPWG--KFAAEIRDPSRQGARLWLGTFE--TAEEAARAYDRAAFNM 70 (152)
Q Consensus 27 ~~~~~g--kw~A~I~~~~~~gk~~~LGtF~--t~EeAA~AYD~aa~~~ 70 (152)
.-.++| .|.-+.+...+ -+++-||.|+ |..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 345554 48888776332 2557899998 4777777666655554
No 11
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=27.08 E-value=2.1e+02 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=37.6
Q ss_pred EEEEEeCCCCCCeEEecCCC--CCHHHHHHHHHHHHHhhcCCC--------CCCCCCCchhhhhcc
Q 048608 34 FAAEIRDPSRQGARLWLGTF--ETAEEAARAYDRAAFNMRGHL--------AILNFPNEYYSQVMG 89 (152)
Q Consensus 34 w~A~I~~~~~~gk~~~LGtF--~t~EeAA~AYD~aa~~~~G~~--------a~~Nfp~~~y~~~l~ 89 (152)
|.|+|.. |.-++-=.- .+++.|..|...|+.++=+.. .-++|..+.|.....
T Consensus 123 wvArVk~----Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~ 184 (219)
T 3j0l_J 123 LAARVDI----GQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKRE 184 (219)
T ss_dssp ECEEECT----TCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTT
T ss_pred EEEEEcC----CCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHH
Confidence 9999976 555543222 468899999999999975432 358899988886544
No 12
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=23.18 E-value=1e+02 Score=22.38 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCCeE-EecCCCCCHHHHHHHHHHHHHhhc
Q 048608 34 FAAEIRDPSRQGAR-LWLGTFETAEEAARAYDRAAFNMR 71 (152)
Q Consensus 34 w~A~I~~~~~~gk~-~~LGtF~t~EeAA~AYD~aa~~~~ 71 (152)
|.|.|.. |+- +-++. .+++.|..|...|+.++=
T Consensus 92 wva~Vk~----G~ilfEi~g-~~~~~A~eAlr~a~~KLP 125 (136)
T 3r8s_M 92 WVALIQP----GKVLYEMDG-VPEELAREAFKLAAAKLP 125 (136)
T ss_dssp EEEEECT----TCEEEEEES-SCHHHHHHHHHHHHTTCS
T ss_pred EEEEECC----CCEEEEEeC-CCHHHHHHHHHHHHhcCC
Confidence 9999976 444 44555 589999999999998874
Done!