Query 048610
Match_columns 87
No_of_seqs 166 out of 1061
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 2.7E-31 9.3E-36 165.5 9.8 84 3-87 16-99 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.7E-31 1.6E-35 159.4 9.4 76 11-87 1-76 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.4E-31 1.9E-35 159.9 9.3 73 14-87 1-73 (107)
4 3osg_A MYB21; transcription-DN 100.0 1.3E-30 4.6E-35 162.2 9.4 79 7-87 4-82 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 2.6E-30 8.8E-35 161.7 9.1 74 13-87 1-74 (131)
6 2dim_A Cell division cycle 5-l 100.0 3.5E-30 1.2E-34 146.1 5.2 68 7-75 2-69 (70)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.1E-29 1.7E-33 160.0 8.4 81 6-87 50-130 (159)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 1.9E-28 6.5E-33 157.3 4.8 76 11-87 3-78 (159)
9 2d9a_A B-MYB, MYB-related prot 99.9 1.5E-24 5.2E-29 119.4 6.6 58 8-66 2-59 (60)
10 2roh_A RTBP1, telomere binding 99.9 8.7E-24 3E-28 130.7 8.6 78 9-87 26-113 (122)
11 2juh_A Telomere binding protei 99.9 1E-23 3.5E-28 130.2 7.8 79 8-87 11-99 (121)
12 1gvd_A MYB proto-oncogene prot 99.9 5.5E-24 1.9E-28 114.1 5.7 52 12-64 1-52 (52)
13 1guu_A C-MYB, MYB proto-oncoge 99.9 9.7E-24 3.3E-28 113.1 5.6 52 12-64 1-52 (52)
14 1ity_A TRF1; helix-turn-helix, 99.9 1.2E-23 4E-28 118.8 6.2 63 8-71 4-68 (69)
15 1x41_A Transcriptional adaptor 99.9 2.8E-22 9.7E-27 110.4 6.6 55 9-64 3-57 (60)
16 3sjm_A Telomeric repeat-bindin 99.9 1.8E-22 6.2E-27 112.6 5.5 55 11-66 8-64 (64)
17 2din_A Cell division cycle 5-l 99.9 1.2E-22 4.2E-27 113.7 2.7 59 7-68 2-60 (66)
18 1w0t_A Telomeric repeat bindin 99.9 1.2E-21 4E-26 105.4 5.7 49 13-62 1-51 (53)
19 2elk_A SPCC24B10.08C protein; 99.8 2.6E-21 8.7E-26 105.9 6.4 53 8-61 3-56 (58)
20 2yum_A ZZZ3 protein, zinc fing 99.8 1.3E-21 4.5E-26 111.8 5.0 61 8-69 2-67 (75)
21 2cu7_A KIAA1915 protein; nucle 99.8 2.1E-21 7.1E-26 110.3 5.0 59 7-67 2-60 (72)
22 2llk_A Cyclin-D-binding MYB-li 99.8 1.1E-20 3.7E-25 107.7 6.6 60 3-66 12-71 (73)
23 2aje_A Telomere repeat-binding 99.8 4.1E-20 1.4E-24 111.7 6.1 81 6-87 5-95 (105)
24 2ckx_A NGTRF1, telomere bindin 99.8 3.9E-19 1.3E-23 103.5 8.0 69 15-84 1-79 (83)
25 3zqc_A MYB3; transcription-DNA 99.8 5.3E-20 1.8E-24 114.8 4.6 65 7-73 47-111 (131)
26 1ign_A Protein (RAP1); RAP1,ye 99.8 1.3E-19 4.5E-24 122.3 6.3 75 9-84 3-111 (246)
27 2yus_A SWI/SNF-related matrix- 99.7 2E-18 6.9E-23 99.7 5.9 52 7-60 11-62 (79)
28 1gv2_A C-MYB, MYB proto-oncoge 99.7 2.4E-18 8.2E-23 103.5 6.1 55 7-63 49-103 (105)
29 2ltp_A Nuclear receptor corepr 99.6 1.9E-19 6.6E-24 106.0 0.0 57 5-63 7-63 (89)
30 2k9n_A MYB24; R2R3 domain, DNA 99.7 8E-18 2.7E-22 101.7 6.0 55 7-63 46-100 (107)
31 2cqr_A RSGI RUH-043, DNAJ homo 99.7 6.9E-18 2.4E-22 96.1 4.7 56 6-62 10-68 (73)
32 1h8a_C AMV V-MYB, MYB transfor 99.7 1.6E-17 5.4E-22 103.1 6.2 55 7-63 72-126 (128)
33 3osg_A MYB21; transcription-DN 99.7 1.9E-17 6.6E-22 102.6 5.6 54 7-62 55-108 (126)
34 2cjj_A Radialis; plant develop 99.5 4.2E-15 1.4E-19 88.0 4.6 48 13-61 7-57 (93)
35 1x58_A Hypothetical protein 49 99.5 8.7E-14 3E-18 76.5 5.0 48 13-62 7-57 (62)
36 2eqr_A N-COR1, N-COR, nuclear 99.4 4.2E-13 1.4E-17 73.7 6.7 53 7-61 5-57 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.3 7.1E-12 2.4E-16 70.9 5.2 52 10-63 4-58 (72)
38 1fex_A TRF2-interacting telome 99.2 2.2E-11 7.7E-16 66.4 3.7 48 14-62 2-58 (59)
39 2llk_A Cyclin-D-binding MYB-li 99.2 2.2E-11 7.5E-16 69.1 3.6 34 54-87 10-43 (73)
40 2iw5_B Protein corest, REST co 99.1 9.7E-11 3.3E-15 78.6 6.3 49 12-62 131-179 (235)
41 1wgx_A KIAA1903 protein; MYB D 99.1 2.1E-10 7.3E-15 64.9 5.4 48 14-62 8-58 (73)
42 2yqk_A Arginine-glutamic acid 98.8 2.5E-08 8.7E-13 54.8 5.9 52 7-60 2-54 (63)
43 3hm5_A DNA methyltransferase 1 98.7 1.6E-08 5.5E-13 59.6 5.3 48 13-61 29-80 (93)
44 2din_A Cell division cycle 5-l 98.7 1E-08 3.5E-13 56.6 3.6 28 60-87 2-29 (66)
45 4eef_G F-HB80.4, designed hema 98.6 6.2E-09 2.1E-13 58.7 1.0 44 14-58 20-66 (74)
46 2xag_B REST corepressor 1; ami 98.6 9.8E-08 3.4E-12 70.0 6.2 47 13-61 379-425 (482)
47 2cu7_A KIAA1915 protein; nucle 98.5 1.4E-07 4.8E-12 52.8 3.9 27 61-87 3-29 (72)
48 1ug2_A 2610100B20RIK gene prod 98.5 9.3E-07 3.2E-11 51.6 7.0 48 13-61 32-81 (95)
49 2d9a_A B-MYB, MYB-related prot 98.4 2.3E-07 7.9E-12 50.1 3.7 25 62-86 3-27 (60)
50 1gvd_A MYB proto-oncogene prot 98.4 3.1E-07 1.1E-11 48.2 3.5 23 65-87 1-23 (52)
51 1guu_A C-MYB, MYB proto-oncoge 98.4 3.2E-07 1.1E-11 48.2 3.2 23 65-87 1-23 (52)
52 4a69_C Nuclear receptor corepr 98.3 6.4E-07 2.2E-11 52.7 4.6 45 14-60 43-87 (94)
53 2crg_A Metastasis associated p 98.3 1.2E-06 4.2E-11 48.9 4.6 46 13-60 7-53 (70)
54 2lr8_A CAsp8-associated protei 97.6 1.1E-07 3.9E-12 52.7 0.0 46 15-62 15-62 (70)
55 1x41_A Transcriptional adaptor 98.3 1E-06 3.4E-11 47.7 3.7 25 62-86 3-27 (60)
56 1w0t_A Telomeric repeat bindin 98.2 9.4E-07 3.2E-11 46.6 3.2 21 66-86 1-21 (53)
57 2ebi_A DNA binding protein GT- 98.2 5.5E-07 1.9E-11 51.9 2.4 49 13-61 3-63 (86)
58 2dim_A Cell division cycle 5-l 98.2 1.4E-06 4.8E-11 48.4 3.7 25 62-86 4-28 (70)
59 1ity_A TRF1; helix-turn-helix, 98.2 1.4E-06 4.9E-11 48.2 3.7 26 61-86 4-29 (69)
60 3sjm_A Telomeric repeat-bindin 98.2 1.6E-06 5.6E-11 47.6 3.4 22 65-86 9-30 (64)
61 1ofc_X ISWI protein; nuclear p 98.1 9.6E-06 3.3E-10 56.6 7.6 71 15-86 111-231 (304)
62 2yum_A ZZZ3 protein, zinc fing 98.1 2.4E-06 8E-11 48.0 3.7 25 62-86 3-27 (75)
63 2elk_A SPCC24B10.08C protein; 98.1 3.1E-06 1E-10 45.5 3.8 25 62-86 4-28 (58)
64 2ltp_A Nuclear receptor corepr 97.3 6.9E-07 2.3E-11 52.0 0.0 29 59-87 8-36 (89)
65 4iej_A DNA methyltransferase 1 97.9 2.5E-05 8.4E-10 45.8 5.2 49 12-61 28-80 (93)
66 1x58_A Hypothetical protein 49 97.9 1E-05 3.6E-10 44.1 3.3 22 66-87 7-28 (62)
67 2aje_A Telomere repeat-binding 97.8 2.2E-05 7.5E-10 47.0 3.7 26 62-87 8-33 (105)
68 2juh_A Telomere binding protei 97.8 1.8E-05 6.3E-10 48.5 3.4 27 61-87 11-37 (121)
69 3hm5_A DNA methyltransferase 1 97.7 3.5E-05 1.2E-09 45.2 3.2 34 50-87 17-50 (93)
70 2yus_A SWI/SNF-related matrix- 97.6 5.4E-05 1.8E-09 43.1 3.6 24 64-87 15-38 (79)
71 2roh_A RTBP1, telomere binding 97.6 6.4E-05 2.2E-09 46.1 3.9 25 63-87 27-51 (122)
72 1ign_A Protein (RAP1); RAP1,ye 97.5 0.00015 5.3E-09 49.0 5.3 52 10-62 90-198 (246)
73 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00011 3.8E-09 41.2 3.6 24 63-86 14-37 (73)
74 4b4c_A Chromodomain-helicase-D 97.3 0.00034 1.2E-08 45.7 4.9 37 7-43 127-163 (211)
75 4b4c_A Chromodomain-helicase-D 97.3 0.00089 3E-08 43.7 6.8 43 11-54 4-50 (211)
76 2y9y_A Imitation switch protei 97.0 0.0033 1.1E-07 44.9 7.4 39 15-54 124-163 (374)
77 1fex_A TRF2-interacting telome 96.9 0.00095 3.2E-08 35.8 3.2 19 67-85 2-20 (59)
78 1irz_A ARR10-B; helix-turn-hel 96.8 0.0059 2E-07 33.3 6.1 50 11-60 4-56 (64)
79 1ofc_X ISWI protein; nuclear p 96.6 0.0028 9.7E-08 44.1 4.7 48 13-61 211-273 (304)
80 2xb0_X Chromo domain-containin 96.5 0.004 1.4E-07 42.7 4.8 29 15-43 169-197 (270)
81 2eqr_A N-COR1, N-COR, nuclear 96.4 0.0041 1.4E-07 33.3 3.8 22 66-87 11-32 (61)
82 2cqq_A RSGI RUH-037, DNAJ homo 96.4 0.0035 1.2E-07 34.9 3.6 23 64-86 5-27 (72)
83 2xag_B REST corepressor 1; ami 95.7 0.0018 6.2E-08 47.6 0.0 43 15-59 190-232 (482)
84 2y9y_A Imitation switch protei 94.6 0.054 1.9E-06 38.7 4.9 48 13-61 227-289 (374)
85 4iej_A DNA methyltransferase 1 94.0 0.067 2.3E-06 31.1 3.6 28 55-86 22-49 (93)
86 2yqk_A Arginine-glutamic acid 94.0 0.075 2.6E-06 28.5 3.6 24 63-86 5-28 (63)
87 2iw5_B Protein corest, REST co 93.4 0.066 2.3E-06 35.9 3.2 22 66-87 132-153 (235)
88 1wgx_A KIAA1903 protein; MYB D 92.4 0.19 6.6E-06 27.9 3.8 21 66-86 7-27 (73)
89 1ug2_A 2610100B20RIK gene prod 90.9 0.19 6.6E-06 29.1 2.7 19 69-87 35-53 (95)
90 2lr8_A CAsp8-associated protei 90.1 0.047 1.6E-06 30.1 0.0 19 69-87 16-34 (70)
91 2rq5_A Protein jumonji; develo 90.4 0.26 8.8E-06 29.8 3.1 45 36-83 65-113 (121)
92 2li6_A SWI/SNF chromatin-remod 90.2 0.3 1E-05 29.0 3.3 39 24-63 53-98 (116)
93 1ig6_A MRF-2, modulator recogn 85.5 1 3.5E-05 26.2 3.6 40 24-63 37-87 (107)
94 2xb0_X Chromo domain-containin 84.8 1.6 5.5E-05 29.7 4.7 46 13-59 2-51 (270)
95 2crg_A Metastasis associated p 84.7 1.1 3.9E-05 24.2 3.3 21 66-86 7-27 (70)
96 2jrz_A Histone demethylase jar 83.2 1.7 6E-05 25.7 3.9 40 24-63 44-93 (117)
97 3i4p_A Transcriptional regulat 82.5 1.6 5.3E-05 26.9 3.7 43 20-64 3-45 (162)
98 1c20_A DEAD ringer protein; DN 81.8 2.3 8E-05 25.5 4.2 40 24-63 56-106 (128)
99 2p1m_A SKP1-like protein 1A; F 81.5 1.7 5.9E-05 26.9 3.6 35 38-80 119-153 (160)
100 1irz_A ARR10-B; helix-turn-hel 81.0 2.7 9.2E-05 22.6 3.8 21 66-86 6-26 (64)
101 1kkx_A Transcription regulator 80.8 0.58 2E-05 28.2 1.2 27 36-63 71-97 (123)
102 2lm1_A Lysine-specific demethy 80.3 2.5 8.7E-05 24.4 3.9 40 24-63 48-97 (107)
103 2kk0_A AT-rich interactive dom 80.2 2 7E-05 26.4 3.6 44 36-79 87-136 (145)
104 2cxy_A BAF250B subunit, HBAF25 79.9 2.7 9.3E-05 25.1 4.0 40 24-63 55-104 (125)
105 3cz6_A DNA-binding protein RAP 79.7 1.6 5.4E-05 27.8 2.9 17 10-26 110-126 (168)
106 3v7d_A Suppressor of kinetocho 79.1 2.5 8.5E-05 26.5 3.8 35 38-80 127-161 (169)
107 2eqy_A RBP2 like, jumonji, at 78.4 3 0.0001 24.8 3.9 40 24-63 46-95 (122)
108 2jxj_A Histone demethylase jar 77.0 1.9 6.6E-05 24.4 2.6 28 36-63 59-89 (96)
109 4a69_C Nuclear receptor corepr 76.3 2.5 8.4E-05 24.2 2.9 20 67-86 43-62 (94)
110 2ast_A S-phase kinase-associat 72.0 2.9 9.8E-05 25.7 2.6 56 17-80 94-154 (159)
111 2e1c_A Putative HTH-type trans 70.4 8 0.00028 23.9 4.5 44 19-64 26-69 (171)
112 2o8x_A Probable RNA polymerase 65.8 8.4 0.00029 19.5 3.4 40 17-60 16-55 (70)
113 2dbb_A Putative HTH-type trans 62.3 15 0.0005 21.8 4.4 40 20-61 9-48 (151)
114 1ku3_A Sigma factor SIGA; heli 60.8 11 0.00039 19.5 3.3 39 18-60 12-54 (73)
115 2cyy_A Putative HTH-type trans 60.1 17 0.00057 21.6 4.4 41 20-62 7-47 (151)
116 2cg4_A Regulatory protein ASNC 56.6 18 0.0006 21.5 4.1 39 20-60 8-46 (152)
117 2ia0_A Putative HTH-type trans 56.5 14 0.00049 22.7 3.8 40 20-61 17-56 (171)
118 3h8k_B Autocrine motility fact 56.5 7.9 0.00027 17.4 1.8 11 17-27 1-11 (28)
119 3eyi_A Z-DNA-binding protein 1 55.7 10 0.00036 20.7 2.6 40 17-57 7-46 (72)
120 2p5v_A Transcriptional regulat 55.5 19 0.00064 21.7 4.1 41 20-62 10-50 (162)
121 2pn6_A ST1022, 150AA long hypo 51.3 17 0.00058 21.4 3.3 41 21-63 4-44 (150)
122 2k0m_A Uncharacterized protein 51.3 12 0.00043 21.8 2.6 38 48-85 15-52 (104)
123 3cz6_A DNA-binding protein RAP 50.9 12 0.0004 23.8 2.6 28 52-79 98-126 (168)
124 2p7v_B Sigma-70, RNA polymeras 49.8 15 0.00053 18.7 2.7 25 35-61 26-50 (68)
125 2cfx_A HTH-type transcriptiona 49.8 22 0.00076 20.9 3.7 39 21-61 6-44 (144)
126 1i1g_A Transcriptional regulat 49.4 27 0.00093 20.1 4.1 39 21-61 5-43 (141)
127 1qgp_A Protein (double strande 46.1 31 0.0011 18.4 3.6 39 18-58 12-53 (77)
128 3e7l_A Transcriptional regulat 45.7 29 0.001 17.6 4.2 29 20-49 19-47 (63)
129 2o71_A Death domain-containing 42.8 17 0.00058 21.3 2.3 22 24-46 26-47 (115)
130 2ba3_A NIKA; dimer, bacterial 42.6 13 0.00043 18.3 1.5 21 14-34 19-39 (51)
131 3hug_A RNA polymerase sigma fa 41.0 35 0.0012 18.4 3.4 24 35-60 54-77 (92)
132 1ntc_A Protein (nitrogen regul 38.9 48 0.0016 18.1 4.5 29 20-49 51-79 (91)
133 2of5_A Death domain-containing 38.1 17 0.00057 21.3 1.7 22 24-46 26-47 (114)
134 2w25_A Probable transcriptiona 38.0 44 0.0015 19.6 3.8 39 21-61 8-46 (150)
135 2of5_H Leucine-rich repeat and 37.9 30 0.001 20.1 2.9 24 22-46 13-36 (118)
136 2q1z_A RPOE, ECF SIGE; ECF sig 36.3 34 0.0012 20.3 3.1 24 35-60 152-175 (184)
137 2jvw_A Uncharacterized protein 35.8 26 0.00089 19.8 2.2 22 22-46 18-39 (88)
138 1tty_A Sigma-A, RNA polymerase 35.2 48 0.0017 17.7 3.3 24 35-60 39-62 (87)
139 1qbj_A Protein (double-strande 35.1 56 0.0019 17.7 4.3 40 18-59 8-50 (81)
140 1or7_A Sigma-24, RNA polymeras 32.6 52 0.0018 19.6 3.5 24 35-60 157-180 (194)
141 3b73_A PHIH1 repressor-like pr 32.2 58 0.002 18.8 3.5 47 15-61 8-54 (111)
142 3lqv_P Splicing factor 3B subu 31.5 22 0.00075 17.1 1.2 29 49-79 3-32 (39)
143 1y66_A Engrailed homeodomain; 31.5 38 0.0013 16.7 2.1 19 16-34 3-21 (52)
144 4ae8_A Thioesterase superfamil 29.7 49 0.0017 21.2 3.1 39 8-46 15-53 (211)
145 3k6g_A Telomeric repeat-bindin 28.0 95 0.0033 18.2 4.8 61 22-86 14-85 (111)
146 2bl8_A Enterocine A immunity p 27.8 88 0.003 18.2 3.6 26 13-38 65-90 (103)
147 4ayb_F DNA-directed RNA polyme 26.4 81 0.0028 18.3 3.4 64 15-85 45-110 (113)
148 1wxp_A THO complex subunit 1; 26.4 38 0.0013 19.3 2.0 24 22-46 18-41 (110)
149 2guk_A Hypothetical protein PG 26.2 31 0.0011 20.7 1.5 26 51-78 72-98 (120)
150 1dw9_A Cyanate lyase; cyanate 26.1 1.2E+02 0.0042 18.8 5.7 26 23-51 16-41 (156)
151 3r8n_M 30S ribosomal protein S 25.9 52 0.0018 19.4 2.5 36 48-85 27-62 (114)
152 3mzy_A RNA polymerase sigma-H 25.6 75 0.0026 18.1 3.3 24 35-60 125-148 (164)
153 1rp3_A RNA polymerase sigma fa 24.8 78 0.0027 19.4 3.4 24 35-60 204-227 (239)
154 1xsv_A Hypothetical UPF0122 pr 24.6 89 0.0031 17.7 3.4 30 27-59 35-64 (113)
155 1xn7_A Hypothetical protein YH 23.8 83 0.0028 16.9 2.9 31 23-55 5-35 (78)
156 1pdn_C Protein (PRD paired); p 23.7 98 0.0033 16.8 5.6 65 15-83 16-89 (128)
157 2xsa_A Ogoga, hyaluronoglucosa 23.4 1E+02 0.0035 22.4 4.1 21 15-35 12-32 (447)
158 1umq_A Photosynthetic apparatu 23.2 1E+02 0.0034 16.8 5.4 31 17-48 38-68 (81)
159 1ngr_A P75 low affinity neurot 21.8 17 0.00059 20.1 -0.2 22 19-46 12-33 (85)
160 1eto_A FIS, factor for inversi 21.0 1.2E+02 0.0042 16.9 4.2 28 20-48 58-85 (98)
161 1x3u_A Transcriptional regulat 20.7 96 0.0033 15.7 3.3 41 17-62 17-57 (79)
162 1k78_A Paired box protein PAX5 20.3 1.4E+02 0.0046 17.2 9.0 66 15-84 31-105 (149)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.7e-31 Score=165.48 Aligned_cols=84 Identities=39% Similarity=0.787 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q 048610 3 KAPGSEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLH 82 (87)
Q Consensus 3 r~~~~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v 82 (87)
|+....+|++++|+||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 45567889999999999999999999999998789999999998 99999999999999999999999999999999999
Q ss_pred HHhCC
Q 048610 83 EQLGN 87 (87)
Q Consensus 83 ~~~Gn 87 (87)
.+||+
T Consensus 95 ~~~G~ 99 (128)
T 1h8a_C 95 KRLGN 99 (128)
T ss_dssp HHHCS
T ss_pred HHHCc
Confidence 99996
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=4.7e-31 Score=159.41 Aligned_cols=76 Identities=42% Similarity=0.835 Sum_probs=73.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 11 SLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 11 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
.+++|+||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|.+++++||++||.+|+++|.+||+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999998789999999998 9999999999999999999999999999999999999996
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=5.4e-31 Score=159.91 Aligned_cols=73 Identities=32% Similarity=0.583 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 14 KGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
||+||+|||++|+++|..||..+|..||..|++ ||+.||++||.++|+|.+++++||++||.+|+++|.+|||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999996
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.3e-30 Score=162.16 Aligned_cols=79 Identities=29% Similarity=0.549 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+.++..++|+||+|||++|+++|..||. +|..||..|++ ||+.||++||.++|+|.+++++||.+||.+|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999997 99999999998 999999999999999999999999999999999999999
Q ss_pred C
Q 048610 87 N 87 (87)
Q Consensus 87 n 87 (87)
+
T Consensus 82 ~ 82 (126)
T 3osg_A 82 R 82 (126)
T ss_dssp S
T ss_pred c
Confidence 6
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=2.6e-30 Score=161.73 Aligned_cols=74 Identities=35% Similarity=0.653 Sum_probs=71.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
.||+||+|||++|+.+|..||.++|..||..|++ ||+.||++||.++|+|.+++++||++||.+|+++|.+||+
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 74 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS 74 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc
Confidence 3799999999999999999998899999999998 9999999999999999999999999999999999999996
No 6
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.5e-30 Score=146.06 Aligned_cols=68 Identities=28% Similarity=0.614 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHH
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEED 75 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd 75 (87)
+..|.+++++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|.+++++||++||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999998899999999998 9999999999999999999999999997
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.1e-29 Score=159.95 Aligned_cols=81 Identities=41% Similarity=0.798 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 048610 6 GSEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQL 85 (87)
Q Consensus 6 ~~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (87)
...+|.+++++||+|||+.|+++|..||.++|..||..|++ ||+.||++||.++|+|.+++++||++||.+|++++.+|
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 45789999999999999999999999998789999999998 99999999999999999999999999999999999999
Q ss_pred CC
Q 048610 86 GN 87 (87)
Q Consensus 86 Gn 87 (87)
||
T Consensus 129 g~ 130 (159)
T 1h89_C 129 GN 130 (159)
T ss_dssp CS
T ss_pred CC
Confidence 96
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.9e-28 Score=157.29 Aligned_cols=76 Identities=34% Similarity=0.690 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 11 SLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 11 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
++++++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|.+++++||++||..|+++|..||+
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~ 78 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGP 78 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCc
Confidence 367899999999999999999998899999999998 9999999999999999999999999999999999999994
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=1.5e-24 Score=119.38 Aligned_cols=58 Identities=28% Similarity=0.528 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCC
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR 66 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~ 66 (87)
..|.+++++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 358899999999999999999999997799999999999 9999999999999999875
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.90 E-value=8.7e-24 Score=130.74 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHh----CCCCChhhHHHHHHhhc-----CCCCCCCCCCHHH-HHHH
Q 048610 9 KPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEE-DETI 78 (87)
Q Consensus 9 ~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qc~~rw~~~l-----~~~~~~~~wt~eE-d~~L 78 (87)
....++++||+|||+.|+++|++||.++|+.|+..+ ++ ||+.||++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345678999999999999999999988999999974 66 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCC
Q 048610 79 IKLHEQLGN 87 (87)
Q Consensus 79 ~~~v~~~Gn 87 (87)
+.++..|||
T Consensus 105 ~~~h~~~g~ 113 (122)
T 2roh_A 105 LAAQAYWSV 113 (122)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 999999997
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.90 E-value=1e-23 Score=130.23 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHh----CCCCChhhHHHHHHhhcC-----CCCCCC-CCCHHHHHH
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYLR-----PDIRRG-NFTQEEDET 77 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qc~~rw~~~l~-----~~~~~~-~wt~eEd~~ 77 (87)
..+..++++||+|||+.|+++|.+||.++|+.|+..+ ++ ||+.||++||.+++. |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4567889999999999999999999988999999985 66 999999999999997 999998 999999999
Q ss_pred HHHHHHHhCC
Q 048610 78 IIKLHEQLGN 87 (87)
Q Consensus 78 L~~~v~~~Gn 87 (87)
|+.++..|||
T Consensus 90 v~~~h~~~gn 99 (121)
T 2juh_A 90 VLAAHAYWSQ 99 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 9999999987
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.90 E-value=5.5e-24 Score=114.12 Aligned_cols=52 Identities=46% Similarity=0.884 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCC
Q 048610 12 LRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (87)
Q Consensus 12 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~ 64 (87)
+++++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998789999999998 99999999999999984
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.89 E-value=9.7e-24 Score=113.11 Aligned_cols=52 Identities=33% Similarity=0.683 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCC
Q 048610 12 LRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (87)
Q Consensus 12 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~ 64 (87)
+++++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997799999999998 99999999999999984
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.89 E-value=1.2e-23 Score=118.78 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC--CCCChhhHHHHHHhhcCCCCCCCCCC
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIRRGNFT 71 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qc~~rw~~~l~~~~~~~~wt 71 (87)
.+|..++++||+|||+.|+++|..||.++|..||..|+ + ||+.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56788999999999999999999999889999999999 7 999999999999999999887654
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=2.8e-22 Score=110.38 Aligned_cols=55 Identities=20% Similarity=0.460 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCC
Q 048610 9 KPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (87)
Q Consensus 9 ~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~ 64 (87)
.|++.+++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 36789999999999999999999998799999999999 99999999999999764
No 16
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.87 E-value=1.8e-22 Score=112.57 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC--CCCChhhHHHHHHhhcCCCCC
Q 048610 11 SLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIR 66 (87)
Q Consensus 11 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qc~~rw~~~l~~~~~ 66 (87)
..+|++||+|||+.|+++|.+||.++|..||+.++ + ||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999889999999865 6 9999999999999988764
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-22 Score=113.66 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~ 68 (87)
+.+|.+++++||+|||++|++++..+|. +|..||. +++ ||+.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 5789999999999999999999999996 9999999 667 999999999999999876554
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.85 E-value=1.2e-21 Score=105.43 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC--CCCChhhHHHHHHhhcC
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qc~~rw~~~l~ 62 (87)
++++||+|||+.|+++|..||.++|..||..|+ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999999 7 999999999999875
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.6e-21 Score=105.93 Aligned_cols=53 Identities=25% Similarity=0.541 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC-CCCChhhHHHHHHhhc
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG-LLRCGKSCRLRWMNYL 61 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~~rw~~~l 61 (87)
....+.+++||+|||++|+++|.+||.++|..||+.|+ + ||+.||++||.+++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 34567789999999999999999999889999999999 7 99999999999875
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=111.80 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCC
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGI-----WNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~ 69 (87)
.+|++.+++||+|||++|+++|..||. .+|..||..|++ ||+.||++||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999996 689999999999 9999999999999988776653
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.84 E-value=2.1e-21 Score=110.34 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~ 67 (87)
+.+|.+++++||+|||++|+++|..||. +|..||..|++ ||+.||++||+++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999996 99999999999 99999999999998775554
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=107.73 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCC
Q 048610 3 KAPGSEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR 66 (87)
Q Consensus 3 r~~~~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~ 66 (87)
|.....+|++++++||+|||++|++++.+||. +|+.||+.| + ||+.||++||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 45567899999999999999999999999995 799999999 7 999999999985 554444
No 23
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.81 E-value=4.1e-20 Score=111.73 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHh----CCCCChhhHHHHHHhhc-----CCCCCCCCCCHHHHH
Q 048610 6 GSEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEEDE 76 (87)
Q Consensus 6 ~~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qc~~rw~~~l-----~~~~~~~~wt~eEd~ 76 (87)
....+..++++||+|||+.|+++|.+||.++|+.|+..+ ++ ||+.+|++||.+++ +|.++++.-+++|-.
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l 83 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL 83 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence 345577889999999999999999999988999999965 56 99999999999998 789988887777766
Q ss_pred H-HHHHHHHhCC
Q 048610 77 T-IIKLHEQLGN 87 (87)
Q Consensus 77 ~-L~~~v~~~Gn 87 (87)
. +++++..+||
T Consensus 84 ~rv~~~~~~~~~ 95 (105)
T 2aje_A 84 NRVLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6 8888877763
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.79 E-value=3.9e-19 Score=103.51 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHH----hCCCCChhhHHHHHHhhc-----CCCCCC-CCCCHHHHHHHHHHHHH
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKY----AGLLRCGKSCRLRWMNYL-----RPDIRR-GNFTQEEDETIIKLHEQ 84 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~rw~~~l-----~~~~~~-~~wt~eEd~~L~~~v~~ 84 (87)
++||+|||+.|+++|.+||.++|+.|++. |++ ||+.||++||.+++ +|.+++ .+.+++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999996 777 99999999999988 676654 47888888888888764
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.79 E-value=5.3e-20 Score=114.78 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHH
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQE 73 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~e 73 (87)
..+|.+++|+||+|||+.|+++|..|| .+|+.||..|++ ||+.||++||.++|++.+..++|+.+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 467999999999999999999999999 599999999998 99999999999999999888887653
No 26
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.79 E-value=1.3e-19 Score=122.33 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=65.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccchhHHhCCCCChhhHHHHHHhhcCCCCC-----------------
Q 048610 9 KPSLRKGSWAPEEDRKLIAYIRRYGIWN-----WSEMPKYAGLLRCGKSCRLRWMNYLRPDIR----------------- 66 (87)
Q Consensus 9 ~p~~~k~~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~----------------- 66 (87)
.+.+++++||+|||++|+++|.++|... |..||++|+| ||+.||++||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998532 9999999999 9999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH
Q 048610 67 ------------RGNFTQEEDETIIKLHEQ 84 (87)
Q Consensus 67 ------------~~~wt~eEd~~L~~~v~~ 84 (87)
+..||.+||..|...+.+
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred CceeeeccCccccCccchhccHHHHHHHHH
Confidence 789999999999999876
No 27
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=99.68 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhh
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
+.++...+++||+|||++|+++|..|| ++|..||.+|++ ||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 456677799999999999999999999 799999999999 9999999999987
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.74 E-value=2.4e-18 Score=103.46 Aligned_cols=55 Identities=29% Similarity=0.564 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
..+|.+++++||+|||+.|+++|..||. +|+.||..|++ ||+.||++||..+|..
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMRR 103 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC-
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999994 99999999999 9999999999998865
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-19 Score=106.01 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 5 PGSEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 5 ~~~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
+....|.+.+|+||+|||++|+++|..||. +|..||..|++ ||+.||++||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 446779999999999999999999999996 89999999999 9999999999998864
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.72 E-value=8e-18 Score=101.70 Aligned_cols=55 Identities=35% Similarity=0.648 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
..+|++++|+||+|||+.|+.+|..||. +|+.||..|++ ||+.||++||..++..
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKN-RSDNNIRNRWMMIARH 100 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHH
T ss_pred HHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCC-CCHHHHHHHHHHHHhh
Confidence 3679999999999999999999999995 99999999999 9999999999988754
No 31
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=6.9e-18 Score=96.09 Aligned_cols=56 Identities=13% Similarity=0.347 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhC---CCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 6 GSEKPSLRKGSWAPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 6 ~~~~p~~~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
.-.++...+++||++||.+|+.++..|| ..+|.+||..|++ ||+.||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3466788899999999999999999998 3489999999999 999999999998775
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.71 E-value=1.6e-17 Score=103.05 Aligned_cols=55 Identities=29% Similarity=0.570 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
..+|.+++++||+|||+.|++++..||. +|+.||..|++ ||+.||++||..++..
T Consensus 72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 72 HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAVKNHWNSTMRR 126 (128)
T ss_dssp TTCSSSCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTT-CCHHHHHHHHHTTTTC
T ss_pred hcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCC-CCHHHHHHHHHHHHhc
Confidence 5689999999999999999999999994 99999999998 9999999999988764
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.70 E-value=1.9e-17 Score=102.60 Aligned_cols=54 Identities=28% Similarity=0.557 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
..+|.+++|+||+|||++|+++|..|| .+|+.||..|++ ||+.||++||..+++
T Consensus 55 ~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 55 YLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPG-RTDIHIKNRWVTISN 108 (126)
T ss_dssp HTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTT-CCHHHHHHHHHHHHH
T ss_pred hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 367999999999999999999999999 599999999998 999999999998874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.55 E-value=4.2e-15 Score=88.04 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
.+++||+|||++|.+++..|+ ...|.+||..|++ ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 367899999999999999997 3579999999999 99999999999874
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=8.7e-14 Score=76.46 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhH---HhCCCCChhhHHHHHHhhcC
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPK---YAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~---~~~~~Rt~~qc~~rw~~~l~ 62 (87)
.+.+||+|||+.|++.|++||. +|++|+. .+.+ ||..++++||.+...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 6789999999999999999996 9999995 4566 999999999998764
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=73.69 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
+.+..-..++||++|++++.+++..|| .+|..||..|++ ||..||..+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 444555678999999999999999999 599999999999 99999999997653
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=7.1e-12 Score=70.94 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=44.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 10 PSLRKGSWAPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 10 p~~~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
++...+.||.|||++|.+++..|+ ...|.+||..+ + ||..||+.||......
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHh
Confidence 345678999999999999999997 34699999999 4 9999999999987543
No 38
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=99.17 E-value=2.2e-11 Score=66.42 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCccchhH-HhCCCCChhhHHHHHHhhcC
Q 048610 14 KGSWAPEEDRKLIAYIRRY--------GIWNWSEMPK-YAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qc~~rw~~~l~ 62 (87)
+.+||+|||+.|++.|..+ |..-|..+|+ .++. +|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 7887 999999999999875
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=69.08 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 54 RLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 54 ~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
.-||.++|+|.+++++||+|||.+|+++|.+|||
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~ 43 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN 43 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 4589999999999999999999999999999997
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.13 E-value=9.7e-11 Score=78.60 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 12 LRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 12 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
....+||+||+..+++++..|| ++|..||+.+++ ||..||+.+|+++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3467899999999999999999 599999999999 999999999998864
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.08 E-value=2.1e-10 Score=64.91 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 14 KGSWAPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
...||.+|+.+|..++..|+. ..|..||..+++ ||..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999974 369999999999 999999999997754
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.5e-08 Score=54.76 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHH-hCCCCChhhHHHHHHhh
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKY-AGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~-~~~~Rt~~qc~~rw~~~ 60 (87)
+..|.+...+||+||-++..+++..||. +|..|++. +++ ||..||..-|...
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence 4578888999999999999999999995 99999994 888 9999999888654
No 43
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=59.55 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC----CCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qc~~rw~~~l 61 (87)
...+||.||++.|++|+++|+. .|..|+..+. ..||..++++||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999996 9999999983 2399999999998754
No 44
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1e-08 Score=56.56 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=26.9
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 60 YLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 60 ~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
+|+|.+++++||.+||.+|+++|..||+
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~ 29 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT 29 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6999999999999999999999999996
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.63 E-value=6.2e-09 Score=58.71 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CccchhHHhCCCCChhhHHHHHH
Q 048610 14 KGSWAPEEDRKLIAYIRRYGIW---NWSEMPKYAGLLRCGKSCRLRWM 58 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~rw~ 58 (87)
-++||.+|++.|..++..|+.. .|.+||..+|+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999643 69999999999 99999999884
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.58 E-value=9.8e-08 Score=70.02 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
...+||.+|-.++++++.+|| .+|..||..+++ ||..||+..|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 467899999999999999999 599999999999 99999999998753
No 47
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=1.4e-07 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=25.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 61 LRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
++|.+++++||.+||.+|+++|.+||+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc
Confidence 578999999999999999999999996
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.46 E-value=9.3e-07 Score=51.63 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
+---||.|||..++..+++.|. ..|..||..|++ |++.|+.+||+..+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 3446999999999999999974 379999999998 99999999998754
No 49
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.42 E-value=2.3e-07 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+|.+++++||++||.+|+++|.+||
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999
No 50
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.38 E-value=3.1e-07 Score=48.23 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Q 048610 65 IRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
+++++||++||.+|+++|.+||+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP 23 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc
Confidence 46899999999999999999995
No 51
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.36 E-value=3.2e-07 Score=48.15 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Q 048610 65 IRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
+++++||++||.+|+++|.+||+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT 23 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999995
No 52
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.35 E-value=6.4e-07 Score=52.73 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhh
Q 048610 14 KGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
...||++|.++..++...|| ++|..||..+++ ||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhcc
Confidence 46799999999999999999 599999999999 9999999988643
No 53
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.28 E-value=1.2e-06 Score=48.90 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhH-HhCCCCChhhHHHHHHhh
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWSEMPK-YAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~rw~~~ 60 (87)
...+||++|-.+..+++..||. +|..|++ .+++ ||..+|..-|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHhh
Confidence 3557999999999999999995 9999999 5898 9999999988754
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.58 E-value=1.1e-07 Score=52.72 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 15 GSWAPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
-.||.|||..|+..+++.|. ..|..||..+ + ||+.|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999885 3699999999 4 999999999987653
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.25 E-value=1e-06 Score=47.68 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
.+.+.+++||++||.+|+++|..||
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999
No 56
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.23 E-value=9.4e-07 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048610 66 RRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~G 86 (87)
++++||++||..|+++|.+||
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 468999999999999999999
No 57
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.23 E-value=5.5e-07 Score=51.87 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCccchhHHhC---CCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGI---------WNWSEMPKYAG---LLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qc~~rw~~~l 61 (87)
+...||.+|-..|+++...... ..|..||..|. -.||+.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567999999999999976311 15999999864 3499999999999864
No 58
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
.|.+++++||++||.+|+++|.+||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999
No 59
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.20 E-value=1.4e-06 Score=48.20 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 61 LRPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
.++...+++||++||.+|+++|.+||
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 45677899999999999999999999
No 60
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.16 E-value=1.6e-06 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC
Q 048610 65 IRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~G 86 (87)
.++++||+|||.+|+++|.+||
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHccC
Confidence 4688999999999999999998
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.13 E-value=9.6e-06 Score=56.58 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHH----hh------------------------------
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWM----NY------------------------------ 60 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~----~~------------------------------ 60 (87)
+.||..+....+.++.+||..+|..||..+++ +|...++.-+. ++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999988 99877753110 00
Q ss_pred ---------------c-CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 61 ---------------L-RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 61 ---------------l-~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+ .+..+...||.+||..|+-.+.+||
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G 231 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLG 231 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhc
Confidence 0 0222345799999999999999998
No 62
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.4e-06 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=23.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+|.+.+++||.|||.+|+++|..||
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g 27 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYP 27 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5788899999999999999999998
No 63
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.11 E-value=3.1e-06 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+..+.+++||++||.+|+++|.+||
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G 28 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLG 28 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 3456688999999999999999999
No 64
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.28 E-value=6.9e-07 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=26.4
Q ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 59 NYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 59 ~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
..++|.+++++||.+||.+|+++|..||+
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~ 36 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR 36 (89)
Confidence 35688899999999999999999999996
No 65
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.91 E-value=2.5e-05 Score=45.84 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhC----CCCChhhHHHHHHhhc
Q 048610 12 LRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYL 61 (87)
Q Consensus 12 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qc~~rw~~~l 61 (87)
+....||.||...|++++++|.. .|..|+.... ..||..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 33468999999999999999996 9999998864 2399999999998764
No 66
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.89 E-value=1e-05 Score=44.13 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC
Q 048610 66 RRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
++.+||+|||..|++.|++||+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~ 28 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN 28 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhH
Confidence 6779999999999999999995
No 67
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.79 E-value=2.2e-05 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 62 RPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
.+..++++||.|||..|+++|.+||+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~ 33 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT 33 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 34567899999999999999999995
No 68
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.78 E-value=1.8e-05 Score=48.48 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 61 LRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
+.+..++++||.+||..|+++|.+||+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~ 37 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT 37 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 456778899999999999999999995
No 69
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.66 E-value=3.5e-05 Score=45.21 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=29.6
Q ss_pred hhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 50 GKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 50 ~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
+.=+.++|.++|.+ .+||.||+..|++++++||.
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdl 50 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDL 50 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCC
Confidence 34567899999976 79999999999999999983
No 70
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.63 E-value=5.4e-05 Score=43.06 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 64 DIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 64 ~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
...+++||.+||.+|+++|..||+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~ 38 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD 38 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC
Confidence 345789999999999999999984
No 71
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.60 E-value=6.4e-05 Score=46.10 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC
Q 048610 63 PDIRRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 63 ~~~~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
...++++||.|||..|+++|++||+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~ 51 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGT 51 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 3457789999999999999999995
No 72
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.53 E-value=0.00015 Score=48.99 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------------
Q 048610 10 PSLRKGSWAPEEDRKLIAYIRR-Y--------------------------------GI---------------------- 34 (87)
Q Consensus 10 p~~~k~~WT~eED~~L~~~v~~-~--------------------------------g~---------------------- 34 (87)
|+..|.+||.+||-.|...+.+ + +.
T Consensus 90 p~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~ 169 (246)
T 1ign_A 90 PPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPI 169 (246)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCC
T ss_pred CccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcc
Confidence 4445789999999999998876 1 00
Q ss_pred --CCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 35 --WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 35 --~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
.-|+.||+.+++ ||..+.|+||...|.
T Consensus 170 ~~~~fk~ia~~~P~-HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 170 AREFFKHFAEEHAA-HTENAWRDRFRKFLL 198 (246)
T ss_dssp CTTHHHHHHHHTTT-SCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHCCC-CChhhHHHHHHHHHh
Confidence 159999999999 999999999998774
No 73
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.49 E-value=0.00011 Score=41.21 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 63 PDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 63 ~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+.+.+++||.+||.+|+.++..||
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g 37 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYP 37 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcC
Confidence 456788999999999999999998
No 74
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.31 E-value=0.00034 Score=45.69 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHH
Q 048610 7 SEKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKY 43 (87)
Q Consensus 7 ~~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 43 (87)
..++......||.+||..|+..|.+||.++|..|-.-
T Consensus 127 ~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 127 HTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3344444557999999999999999999999998764
No 75
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.30 E-value=0.00089 Score=43.69 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCCccchhHH--hCCCCChhhHH
Q 048610 11 SLRKGSWAPEEDRKLIAYIRRYG--IWNWSEMPKY--AGLLRCGKSCR 54 (87)
Q Consensus 11 ~~~k~~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qc~ 54 (87)
.-....||..|-..|+.++.+|| ...|..|+.. |.+ +|...+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~-Ks~~~v~ 50 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVD-KSETDLR 50 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTT-SCHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCC-CCHHHHH
Confidence 33556899999999999999999 5679999875 445 6665544
No 76
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.97 E-value=0.0033 Score=44.90 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhC-CCCChhhHH
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAG-LLRCGKSCR 54 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~ 54 (87)
+.||.-+=..++.++.+||..+-..||..|+ + .|...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~-Kt~eEV~ 163 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPG-KTLEEVR 163 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCS-SSHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccC-CCHHHHH
Confidence 4688888899999999999888999999998 5 8887766
No 77
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.88 E-value=0.00095 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 048610 67 RGNFTQEEDETIIKLHEQL 85 (87)
Q Consensus 67 ~~~wt~eEd~~L~~~v~~~ 85 (87)
+.+||.|||..|++.|.++
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999998
No 78
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.82 E-value=0.0059 Score=33.31 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=40.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CccchhHHhCC-CCChhhHHHHHHhh
Q 048610 11 SLRKGSWAPEEDRKLIAYIRRYGIW--NWSEMPKYAGL-LRCGKSCRLRWMNY 60 (87)
Q Consensus 11 ~~~k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qc~~rw~~~ 60 (87)
...+-.||+|..+..+++|...|.. .+..|.+.|+- +.|..+++.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3457789999999999999999942 26789888763 17999999887765
No 79
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.60 E-value=0.0028 Score=44.15 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccchhHH------------hCCCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGI---WNWSEMPKY------------AGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~------------~~~~Rt~~qc~~rw~~~l 61 (87)
+...||.+||..|+-++.+||. ++|..|... +.. ||+.++..|-...+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kS-RTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKS-RTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHH
Confidence 5567999999999999999999 899999733 344 99999988866554
No 80
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.49 E-value=0.004 Score=42.69 Aligned_cols=29 Identities=31% Similarity=0.723 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHH
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKY 43 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 43 (87)
..|+.+||..|+..|.+||.++|.+|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999754
No 81
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.0041 Score=33.32 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC
Q 048610 66 RRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
..++||++|+.++++++..||.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk 32 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK 32 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 4579999999999999999984
No 82
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.44 E-value=0.0035 Score=34.85 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 048610 64 DIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 64 ~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
....++||.+||.+|.+++..||
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p 27 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFP 27 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC
Confidence 34567899999999999999997
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.69 E-value=0.0018 Score=47.63 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHh
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMN 59 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~ 59 (87)
..||++|..+..+.+..|| ++|..|+.+|++ |+..+|-..|+.
T Consensus 190 d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~-Ksv~e~V~yYY~ 232 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPD-KSIASLVKFYYS 232 (482)
T ss_dssp ---------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcC-ccHHHHHHHcCC-CCHHHHHHHhcc
Confidence 4799999999999999999 599999999999 999999877653
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.57 E-value=0.054 Score=38.69 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccchhHHh------------CCCCChhhHHHHHHhhc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGI---WNWSEMPKYA------------GLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~------------~~~Rt~~qc~~rw~~~l 61 (87)
+...||.+||..|+-++.+||. ++|..|-..+ .. ||+..+..|-...+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kS-RT~~EL~rRc~tLi 289 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRS-RTPVELARRGNTLL 289 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHH
Confidence 3457999999999999999999 8999995542 34 99988888765543
No 85
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.02 E-value=0.067 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=23.4
Q ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 55 LRWMNYLRPDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 55 ~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
+.|..+|.. ..||.+|...|++++++|+
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fd 49 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFD 49 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcC
Confidence 567777753 5899999999999999885
No 86
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.00 E-value=0.075 Score=28.45 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Q 048610 63 PDIRRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 63 ~~~~~~~wt~eEd~~L~~~v~~~G 86 (87)
|.+...+||++|-.+..+++..||
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG 28 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG 28 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC
Confidence 566778999999999999999998
No 87
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=93.35 E-value=0.066 Score=35.93 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC
Q 048610 66 RRGNFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~Gn 87 (87)
..++||++|+.++++++..||+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK 153 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR 153 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS
T ss_pred cCCCCCHHHHHHHHHHHHHHCc
Confidence 3568999999999999999995
No 88
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.40 E-value=0.19 Score=27.86 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048610 66 RRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~G 86 (87)
....||.+|+.+|..+...|+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~ 27 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLP 27 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 346899999999999998875
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=90.87 E-value=0.19 Score=29.14 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 048610 69 NFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 69 ~wt~eEd~~L~~~v~~~Gn 87 (87)
-||.+||+.||...++-|.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~ 53 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGA 53 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTS
T ss_pred EeccccCHHHHHHHHhcCC
Confidence 5999999999999998773
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=90.07 E-value=0.047 Score=30.08 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 048610 69 NFTQEEDETIIKLHEQLGN 87 (87)
Q Consensus 69 ~wt~eEd~~L~~~v~~~Gn 87 (87)
-||.+||..|+..+++-|.
T Consensus 16 lWTReeDR~IL~~cq~~G~ 34 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGP 34 (70)
Confidence 5999999999999988773
No 91
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=90.39 E-value=0.26 Score=29.81 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=34.6
Q ss_pred CccchhHHhCCCC----ChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 048610 36 NWSEMPKYAGLLR----CGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHE 83 (87)
Q Consensus 36 ~W~~Ia~~~~~~R----t~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~ 83 (87)
.|..||..|+-.. .+...+..|.++|.|- ..++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 6999999987533 2457799999999762 2488899999988775
No 92
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.18 E-value=0.3 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
.|..+|...| .+.|..||..|+. -.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 3555665554 1379999999987 5588999999999865
No 93
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=85.49 E-value=1 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCC----ChhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLR----CGKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~R----t~~qc~~rw~~~l~~ 63 (87)
.|..+|...| .+.|.+||..|+... .+.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3555555543 137999999987422 347889999999875
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.79 E-value=1.6 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccchhHH--hCCCCChhhHHHHHHh
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGI--WNWSEMPKY--AGLLRCGKSCRLRWMN 59 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~--~~W~~Ia~~--~~~~Rt~~qc~~rw~~ 59 (87)
++++||..|-..|++.+.+||. ..|..|+.. |.. ++...++.-+..
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~-ks~~~i~~~~~~ 51 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPV-KSFEKYGETYDE 51 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCC-CCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc-CCHHHHHHHHHH
Confidence 5789999999999999999994 469999866 455 777665554443
No 95
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=84.68 E-value=1.1 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048610 66 RRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~G 86 (87)
...+||++|-.+..+++..||
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG 27 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG 27 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 346899999999999999998
No 96
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=83.21 E-value=1.7 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCCC---hhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLRC---GKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rt---~~qc~~rw~~~l~~ 63 (87)
+|..+|...| .+.|..||..|+-..+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4566666654 1379999999876322 56788889888754
No 97
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=82.53 E-value=1.6 Score=26.85 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~ 64 (87)
+-|..|+.+.+..+.-.+..||+.++ -|...|+.|........
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999888889999999999 79999999998765443
No 98
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=81.77 E-value=2.3 Score=25.47 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CCccchhHHhCCCCC----hhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYGI-------WNWSEMPKYAGLLRC----GKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qc~~rw~~~l~~ 63 (87)
.|..+|...|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35556665541 379999999875322 46789999998865
No 99
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=81.49 E-value=1.7 Score=26.93 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=27.0
Q ss_pred cchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 048610 38 SEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIK 80 (87)
Q Consensus 38 ~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~ 80 (87)
..+|..+.| +|+.+||.-|. + ...||+||+..|.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467888888 99999998762 3 23599999988765
No 100
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=81.04 E-value=2.7 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048610 66 RRGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~G 86 (87)
.+-.||+|.-...+++|..+|
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG 26 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLG 26 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHhC
Confidence 456899999999999999998
No 101
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=80.80 E-value=0.58 Score=28.19 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=22.6
Q ss_pred CccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 36 NWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 36 ~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
.|..||..|+. -.+...+..|.++|.|
T Consensus 71 ~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQI-SDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCC-ChHHHHHHHHHHHHHH
Confidence 69999999987 4588889999988854
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=80.34 E-value=2.5 Score=24.38 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=26.9
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCCC---hhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLRC---GKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rt---~~qc~~rw~~~l~~ 63 (87)
.|..+|...| .+.|..||..|+-..+ +.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4555565554 1269999999976322 46778888888754
No 103
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=80.24 E-value=2 Score=26.40 Aligned_cols=44 Identities=30% Similarity=0.418 Sum_probs=29.6
Q ss_pred CccchhHHhCCCC----ChhhHHHHHHhhcCC--CCCCCCCCHHHHHHHH
Q 048610 36 NWSEMPKYAGLLR----CGKSCRLRWMNYLRP--DIRRGNFTQEEDETII 79 (87)
Q Consensus 36 ~W~~Ia~~~~~~R----t~~qc~~rw~~~l~~--~~~~~~wt~eEd~~L~ 79 (87)
.|..||..|+... .+.+++..|.++|.| ...++.=+++|-+.-+
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6999999987522 256789999999976 2344555555544433
No 104
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=79.85 E-value=2.7 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCCC---hhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLRC---GKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rt---~~qc~~rw~~~l~~ 63 (87)
.|..+|...| .+.|.+||..|+...+ +.+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3555555553 1279999999886332 45778888888753
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=79.69 E-value=1.6 Score=27.84 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.6
Q ss_pred CCCCCCCCCHHHHHHHH
Q 048610 10 PSLRKGSWAPEEDRKLI 26 (87)
Q Consensus 10 p~~~k~~WT~eED~~L~ 26 (87)
|.-..|-||+++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56678999999999886
No 106
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=79.11 E-value=2.5 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.3
Q ss_pred cchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 048610 38 SEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIK 80 (87)
Q Consensus 38 ~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~ 80 (87)
..||..+.| +|+.++|.-|. +. ..||+||+..+.+
T Consensus 127 ~~vA~~ikg-ktpeeiR~~f~------I~-nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 127 KVVAEMIRG-RSPEEIRRTFN------IV-NDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHTT-CCHHHHHHHHT------CC-CCCCHHHHHHHHT
T ss_pred HHHHHHHcC-CCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 568888888 99999999772 32 3599999988753
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.42 E-value=3 Score=24.82 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHHHhC-------CCCccchhHHhCCCCC---hhhHHHHHHhhcCC
Q 048610 24 KLIAYIRRYG-------IWNWSEMPKYAGLLRC---GKSCRLRWMNYLRP 63 (87)
Q Consensus 24 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rt---~~qc~~rw~~~l~~ 63 (87)
+|..+|...| .+.|..||..|+-..+ +.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4555666554 1379999999876322 35778888888753
No 108
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=76.98 E-value=1.9 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=20.5
Q ss_pred CccchhHHhCCCC---ChhhHHHHHHhhcCC
Q 048610 36 NWSEMPKYAGLLR---CGKSCRLRWMNYLRP 63 (87)
Q Consensus 36 ~W~~Ia~~~~~~R---t~~qc~~rw~~~l~~ 63 (87)
.|.+||..|+... .+.+.+..|.++|.|
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 7999999987532 245778888887743
No 109
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=76.31 E-value=2.5 Score=24.21 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q 048610 67 RGNFTQEEDETIIKLHEQLG 86 (87)
Q Consensus 67 ~~~wt~eEd~~L~~~v~~~G 86 (87)
...||++|..+..++...||
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g 62 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP 62 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 34799999999999999887
No 110
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=72.01 E-value=2.9 Score=25.74 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----ccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 048610 17 WAPEEDRKLIAYIRRYGIWN-----WSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIK 80 (87)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~ 80 (87)
.+.+.=..|+.+..-.+... =..+|..+.+ +|+.++|..|. +. ..||++|+..|.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~g-kt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSS-CCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 34444444454544444321 1457888888 99999999872 22 3599999987654
No 111
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.42 E-value=8 Score=23.92 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCCC
Q 048610 19 PEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (87)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~ 64 (87)
.+-|..|+.++...+...+..||+.++ -+...|+.|.....+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 355778888888888789999999999 78999999988765443
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.76 E-value=8.4 Score=19.48 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhh
Q 048610 17 WAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
.++. +..++.+....| ..+.+||..++ -+...++.+....
T Consensus 16 L~~~-~r~il~l~~~~g-~s~~eIA~~lg--is~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTD-QREALLLTQLLG-LSYADAAAVCG--CPVGTIRSRVARA 55 (70)
T ss_dssp SCHH-HHHHHHHHHTSC-CCHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcC-CCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 4443 444455555566 48999999998 6777777665543
No 113
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=62.28 E-value=15 Score=21.79 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
+-|..|+.++...+...+..||+.++ -+...|+.+.....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN--TTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 45667888888888779999999999 68888888877643
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.76 E-value=11 Score=19.52 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHH----hCCCCccchhHHhCCCCChhhHHHHHHhh
Q 048610 18 APEEDRKLIAYIRR----YGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 18 T~eED~~L~~~v~~----~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
++.| ..++.+.-- .| ..+.+||..++ -|...++.+....
T Consensus 12 ~~~e-r~il~l~~~l~~~~~-~s~~eIA~~l~--is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SERE-AMVLKMRKGLIDGRE-HTLEEVGAYFG--VTRERIRQIENKA 54 (73)
T ss_dssp CHHH-HHHHHHHHTTTTSSC-CCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHhcccCCC-CCHHHHHHHHC--CCHHHHHHHHHHH
Confidence 4444 444444443 45 48999999998 6777777665543
No 115
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=60.12 E-value=17 Score=21.59 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
+-|..|+.++...+...+..||+.++ -+...|+.|......
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRE 47 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 34667888888888779999999999 788889888876543
No 116
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=56.59 E-value=18 Score=21.48 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhh
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
+-|..|+.++...+...+..||+.++ -+...|+.|....
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L 46 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFG--VSPETIHVRVEKM 46 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 34667888888888789999999999 6888888887654
No 117
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=56.53 E-value=14 Score=22.68 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
+-|..|+.++...+...+..||+.++ -+...|+.|.....
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLK--KPESTIHFRIKKLQ 56 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 44667888888888779999999999 78888988887654
No 118
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=56.51 E-value=7.9 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.954 Sum_probs=8.4
Q ss_pred CCHHHHHHHHH
Q 048610 17 WAPEEDRKLIA 27 (87)
Q Consensus 17 WT~eED~~L~~ 27 (87)
||++|-+..++
T Consensus 1 ~s~~eRq~~Lq 11 (28)
T 3h8k_B 1 WSADERQRMLV 11 (28)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888887653
No 119
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=55.66 E-value=10 Score=20.71 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHH
Q 048610 17 WAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRW 57 (87)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw 57 (87)
.|...++.++......|...=-.||+.++- ||.+++--.-
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LGl-ktAK~VNp~L 46 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALGM-RTAKDVNRDL 46 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTTC-CSGGGTHHHH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhCc-chhhhcCHHH
Confidence 455557788899999998788899999999 9999885443
No 120
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.51 E-value=19 Score=21.65 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
+-|..|+.++...+.-.+..||+.++ -+...|+.|......
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVA--LSPSPCLRRLKQLED 50 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 44667778888888779999999999 688888888776543
No 121
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=51.29 E-value=17 Score=21.43 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcCC
Q 048610 21 EDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (87)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~~ 63 (87)
-|..|+.++...+.-.+..||+.++ -+...|..+.......
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg--~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIR--IPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 4667778887777679999999999 7888898888775543
No 122
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=51.27 E-value=12 Score=21.76 Aligned_cols=38 Identities=3% Similarity=-0.137 Sum_probs=29.4
Q ss_pred CChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 048610 48 RCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQL 85 (87)
Q Consensus 48 Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (87)
.|..++...+..+|+.-......+++|...|+.+...+
T Consensus 15 ~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~H 52 (104)
T 2k0m_A 15 ARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKRH 52 (104)
T ss_dssp SSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Confidence 47778888999999765566689999888888777543
No 123
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.85 E-value=12 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.9
Q ss_pred hHHHHHHhhcC-CCCCCCCCCHHHHHHHH
Q 048610 52 SCRLRWMNYLR-PDIRRGNFTQEEDETII 79 (87)
Q Consensus 52 qc~~rw~~~l~-~~~~~~~wt~eEd~~L~ 79 (87)
++-+.+..-.. |.-..|-||.++|..|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 55566655444 44578899999999875
No 124
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.84 E-value=15 Score=18.67 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=19.8
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
..+.+||..++ -|...++.+....+
T Consensus 26 ~s~~eIA~~lg--is~~tV~~~~~ra~ 50 (68)
T 2p7v_B 26 YTLEEVGKQFD--VTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 48999999999 78878877766544
No 125
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=49.82 E-value=22 Score=20.88 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 21 EDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
-|..|+.++...+......||+.++ -+...|..+-....
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIK--LSPPSVTERVRQLE 44 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 4667888888888779999999999 68888888776654
No 126
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=49.44 E-value=27 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 21 EDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
-|..++.++...+...+..||+.++ -+...|+.+.....
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~lg--~s~~tv~~~l~~L~ 43 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKLG--ISETAVRKRVKALE 43 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 3566777777777679999999997 78888888877643
No 127
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=46.13 E-value=31 Score=18.45 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhC---CCCccchhHHhCCCCChhhHHHHHH
Q 048610 18 APEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWM 58 (87)
Q Consensus 18 T~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qc~~rw~ 58 (87)
|++-|..++.++...+ ...=.+||+.++ -+...+..+-.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~ 53 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHH
Confidence 5677888999999998 446789999998 44455554433
No 128
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=45.70 E-value=29 Score=17.56 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRC 49 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 49 (87)
-|.+.|..++..++ ++.+..|+.++-.|+
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 47778888888888 699999999985343
No 129
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=42.81 E-value=17 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCccchhHHhCC
Q 048610 24 KLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 24 ~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
.|..++...| .+|..+|+.++-
T Consensus 26 ~l~~Ia~~LG-~~Wk~LAR~LGl 47 (115)
T 2o71_A 26 QINQLAQRLG-PEWEPMVLSLGL 47 (115)
T ss_dssp HHHHHHHHCC-TTHHHHHHHTTC
T ss_pred HHHHHHHHHh-hhHHHHHHHcCC
Confidence 5666777778 599999999874
No 130
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=42.63 E-value=13 Score=18.26 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q 048610 14 KGSWAPEEDRKLIAYIRRYGI 34 (87)
Q Consensus 14 k~~WT~eED~~L~~~v~~~g~ 34 (87)
.-+.|++|-+.|...+...|.
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTC
T ss_pred EEEECHHHHHHHHHHHHHhCC
Confidence 446999999999999999995
No 131
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.01 E-value=35 Score=18.40 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=18.6
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
-.-..||..++ -+...++.+..+.
T Consensus 54 ~s~~eIA~~lg--is~~tV~~~l~ra 77 (92)
T 3hug_A 54 WSTAQIATDLG--IAEGTVKSRLHYA 77 (92)
T ss_dssp CCHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 37899999998 7777777776654
No 132
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=38.91 E-value=48 Score=18.07 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCCC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLRC 49 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 49 (87)
-|.+.|..++..++ ++.+..|+.++-.|+
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 36677777888888 589999999885343
No 133
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=38.07 E-value=17 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCCccchhHHhCC
Q 048610 24 KLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 24 ~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
.|..++...| .+|..+|+.++-
T Consensus 26 ~l~~Ia~~lG-~~Wk~LAR~LGl 47 (114)
T 2of5_A 26 QINQLAQRLG-PEWEPMVLSLGL 47 (114)
T ss_dssp HHHHHHHTCC-STHHHHHHTTTC
T ss_pred HHHHHHHHHh-hhHHHHHHHcCC
Confidence 5666677778 599999999874
No 134
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=38.04 E-value=44 Score=19.59 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 21 EDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
-|..++.++...+......||+.++ -+...|..+-....
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 46 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAG--LSVSAVQSRVRRLE 46 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 3556777777777778999999998 68888888776544
No 135
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=37.93 E-value=30 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCccchhHHhCC
Q 048610 22 DRKLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
|..|..+...-|. +|..+|..++-
T Consensus 13 ~~~l~~ia~~lg~-dWk~LAr~Lg~ 36 (118)
T 2of5_H 13 QSNLLSVAGRLGL-DWPAVALHLGV 36 (118)
T ss_dssp HHHHHHHHHTCCT-THHHHHHHTTC
T ss_pred HHHHHHHHHHHhh-HHHHHHHHcCC
Confidence 4567777777885 99999999874
No 136
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.25 E-value=34 Score=20.33 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=18.6
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
-+..+||..++ -+...++.+....
T Consensus 152 ~s~~eIA~~lg--is~~tV~~~l~ra 175 (184)
T 2q1z_A 152 LTHRELAAETG--LPLGTIKSRIRLA 175 (184)
T ss_dssp CSSCCSTTTCC--CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 48899999998 6777787776654
No 137
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=35.79 E-value=26 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.691 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCccchhHHhCC
Q 048610 22 DRKLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
+.+|.++|..|| |...+..+.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I 39 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNI 39 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTS
T ss_pred HHHHHHHHHHhC---HHHHHhhccc
Confidence 578899999998 9999988754
No 138
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.24 E-value=48 Score=17.68 Aligned_cols=24 Identities=13% Similarity=0.010 Sum_probs=18.6
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
..+..||..++ -|...++.+....
T Consensus 39 ~s~~EIA~~lg--is~~tV~~~~~ra 62 (87)
T 1tty_A 39 KTLEEVGQYFN--VTRERIRQIEVKA 62 (87)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHH
Confidence 48999999998 7777777666544
No 139
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.13 E-value=56 Score=17.73 Aligned_cols=40 Identities=8% Similarity=0.201 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhC---CCCccchhHHhCCCCChhhHHHHHHh
Q 048610 18 APEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMN 59 (87)
Q Consensus 18 T~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qc~~rw~~ 59 (87)
+.+-|+.|++++...+ .-.=..||+.++ -+...++.+-..
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vsr~tV~~~L~~ 50 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHH
Confidence 3456888899999998 456789999999 444556555443
No 140
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.58 E-value=52 Score=19.63 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.4
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
-+..+||..++ -+...++.+....
T Consensus 157 ~s~~EIA~~lg--is~~tV~~~l~ra 180 (194)
T 1or7_A 157 LSYEEIAAIMD--CPVGTVRSRIFRA 180 (194)
T ss_dssp CCHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHH
Confidence 37899999998 7777777766553
No 141
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=32.23 E-value=58 Score=18.79 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhc
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l 61 (87)
..|-..=|..++.+...+|...-..||..++-+-|...++.|-...-
T Consensus 8 ~~~md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le 54 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA 54 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 46777778888899988888899999998831178888888866543
No 142
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=31.49 E-value=22 Score=17.12 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=18.5
Q ss_pred ChhhHHH-HHHhhcCCCCCCCCCCHHHHHHHH
Q 048610 49 CGKSCRL-RWMNYLRPDIRRGNFTQEEDETII 79 (87)
Q Consensus 49 t~~qc~~-rw~~~l~~~~~~~~wt~eEd~~L~ 79 (87)
|+.|... ||-+-++. ...|||+||-..++
T Consensus 3 tpe~~~~~~~~~ei~~--RNrpltDEeLD~mL 32 (39)
T 3lqv_P 3 TPEQLQAWRWEREIDE--RNRPLSDEELDAMF 32 (39)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCCCHHHHHHTC
T ss_pred CHHHHHHHHhhccchh--hcCCCCHHHHHHhC
Confidence 4445533 77776653 45699999976553
No 143
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=31.45 E-value=38 Score=16.68 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 048610 16 SWAPEEDRKLIAYIRRYGI 34 (87)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~ 34 (87)
.||.|-+.+|.+.|.+|..
T Consensus 3 qwseeverklkefvrrhqe 21 (52)
T 1y66_A 3 QWSEEVERKLKEFVRRHQE 21 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6999999999999998853
No 144
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A*
Probab=29.66 E-value=49 Score=21.22 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhHHhCC
Q 048610 8 EKPSLRKGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 8 ~~p~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
.+-+++.-.|+++=-.+.-++.++...+.|.+++++...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 53 (211)
T 4ae8_A 15 KDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRT 53 (211)
T ss_dssp CBCSSCCTTCCHHHHHHHHHHHHHTTTSSEEEECCBC--
T ss_pred ccccCCCCccCHHHHHHHHHHHhhCcCCCeEECcccccc
Confidence 456677889999988888888888888899999987543
No 145
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=27.98 E-value=95 Score=18.16 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCccchhHHhCCCCChhhHHH-HHHhhcCCC--CCCCCCCHHHHHHHH--------HHHHHhC
Q 048610 22 DRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRL-RWMNYLRPD--IRRGNFTQEEDETII--------KLHEQLG 86 (87)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~-rw~~~l~~~--~~~~~wt~eEd~~L~--------~~v~~~G 86 (87)
-++|..++.++.. +-..+.+.|- ++.-.... ++. .+++. ...--|+..+|..|. +++.+||
T Consensus 14 ~~~i~~lMeef~~-DL~sVTqAlL--K~SGel~at~~f-L~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG 85 (111)
T 3k6g_A 14 IKIIRQLMEKFNL-DLSTVTQAFL--KNSGELEATSAF-LASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFG 85 (111)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHH--HTTTCHHHHHHH-HHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHH--HccccHHHHHHH-HhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHh
Confidence 4567777888884 7666666554 33323322 322 23442 123359999998875 4666776
No 146
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=27.82 E-value=88 Score=18.17 Aligned_cols=26 Identities=4% Similarity=-0.137 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcc
Q 048610 13 RKGSWAPEEDRKLIAYIRRYGIWNWS 38 (87)
Q Consensus 13 ~k~~WT~eED~~L~~~v~~~g~~~W~ 38 (87)
++-++|++|++.++++-..-..-+|+
T Consensus 65 ~~l~ft~~qe~li~~L~~igk~agLN 90 (103)
T 2bl8_A 65 NKIRFTEYQEELIRNLSEIGRTAGIN 90 (103)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSCTTTS
T ss_pred ccCCCChHHHHHHHHHHHHHhhcCcc
Confidence 46689999999999987765443443
No 147
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=26.41 E-value=81 Score=18.26 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC--ccchhHHhCCCCChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWN--WSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQL 85 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~~Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (87)
.++++++-..|++.....+... -.+|+..+|. +....+ .|=|...+...++++-+.|+..+.+|
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~--~~dElr-----ali~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 45 EKCDAESAQKVVEELSSIISREDVRAVLASICPI--TPDEVR-----SILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp CSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCCC--SSCCCC-----TTTTTTCCCCCCCTHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC--CHHHHH-----HHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 3578888888887776666433 3567777774 333221 23344445568999999999988776
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.40 E-value=38 Score=19.34 Aligned_cols=24 Identities=13% Similarity=0.490 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCCccchhHHhCC
Q 048610 22 DRKLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
+..|-.+...-| .+|..+|+.|+-
T Consensus 18 ~~~~~~ia~~lg-~~Wk~LAr~Lg~ 41 (110)
T 1wxp_A 18 GEQIEVFANKLG-EQWKILAPYLEM 41 (110)
T ss_dssp HHHHHHHHHHHT-TTHHHHTTTTTC
T ss_pred HHHHHHHHHHHh-hhHHHHHHHhCC
Confidence 344555666667 599999999874
No 149
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=26.19 E-value=31 Score=20.68 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=16.7
Q ss_pred hhHHHHHHhhcC-CCCCCCCCCHHHHHHH
Q 048610 51 KSCRLRWMNYLR-PDIRRGNFTQEEDETI 78 (87)
Q Consensus 51 ~qc~~rw~~~l~-~~~~~~~wt~eEd~~L 78 (87)
..|-+--..+.. ..+ ..+|+|||.+|
T Consensus 72 ~~Ci~vir~~~~~~pL--~~lTpEEDFIL 98 (120)
T 2guk_A 72 KECMEAIRLFVSGRSL--NSLTPEEDFII 98 (120)
T ss_dssp HHHHHHHHHHHTTSCG--GGCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCch--hhCCcHHHHHH
Confidence 456555555544 333 36999999987
No 150
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=26.15 E-value=1.2e+02 Score=18.79 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCccchhHHhCCCCChh
Q 048610 23 RKLIAYIRRYGIWNWSEMPKYAGLLRCGK 51 (87)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~ 51 (87)
+.|+.+-..-|. .|.+||+.++ +|..
T Consensus 16 ~~I~~AK~~KGL-Twe~IAe~iG--~S~v 41 (156)
T 1dw9_A 16 DAILLSKAKKDL-SFAEIADGTG--LAEA 41 (156)
T ss_dssp HHHHHHHHHTTC-CHHHHHTTSS--SCHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHhC--cCHH
Confidence 566666667774 9999999988 6664
No 151
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.86 E-value=52 Score=19.36 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=26.5
Q ss_pred CChhhHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 048610 48 RCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQL 85 (87)
Q Consensus 48 Rt~~qc~~rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (87)
+++.++.... -++|+..-+..|++|-..|...+..|
T Consensus 27 ~~A~~I~~~~--gid~~~r~~~Lt~~ei~~l~~~i~~~ 62 (114)
T 3r8n_M 27 TRSKAILAAA--GIAEDVKISELSEGQIDTLRDEVAKF 62 (114)
T ss_dssp HHHHHHHHHT--TCCTTCCSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHc--CcCcccCcccCCHHHHHHHHHHHHHh
Confidence 4555555443 47888888999999999998887443
No 152
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.64 E-value=75 Score=18.09 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=19.0
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
-+...||..++ -+...++.+....
T Consensus 125 ~s~~EIA~~lg--is~~tV~~~~~ra 148 (164)
T 3mzy_A 125 YSYREIATILS--KNLKSIDNTIQRI 148 (164)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHH
Confidence 37899999998 7888887777654
No 153
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.82 E-value=78 Score=19.38 Aligned_cols=24 Identities=8% Similarity=-0.166 Sum_probs=18.1
Q ss_pred CCccchhHHhCCCCChhhHHHHHHhh
Q 048610 35 WNWSEMPKYAGLLRCGKSCRLRWMNY 60 (87)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qc~~rw~~~ 60 (87)
-...+||..++ -+...++.+....
T Consensus 204 ~s~~EIA~~lg--is~~~V~~~~~ra 227 (239)
T 1rp3_A 204 LPAKEVAKILE--TSVSRVSQLKAKA 227 (239)
T ss_dssp CCHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCHHHHHHHHHHH
Confidence 37899999998 7777777766543
No 154
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.55 E-value=89 Score=17.70 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=19.8
Q ss_pred HHHHHhCCCCccchhHHhCCCCChhhHHHHHHh
Q 048610 27 AYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMN 59 (87)
Q Consensus 27 ~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~ 59 (87)
.+....| -....||..++ -+...++.+..+
T Consensus 35 ~l~~~~g-~s~~EIA~~lg--iS~~tV~~~l~r 64 (113)
T 1xsv_A 35 ELFYLED-YSLSEIADTFN--VSRQAVYDNIRR 64 (113)
T ss_dssp HHHHTSC-CCHHHHHHHTT--CCHHHHHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHC--cCHHHHHHHHHH
Confidence 3333445 38899999998 666666655544
No 155
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.85 E-value=83 Score=16.91 Aligned_cols=31 Identities=3% Similarity=-0.071 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCccchhHHhCCCCChhhHHH
Q 048610 23 RKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRL 55 (87)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 55 (87)
+.|++++..+|.-.-+++|..|+ -|+.-+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~--VS~~TIRr 35 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLN--TPQPMINA 35 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTT--CCHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--cCHHHHHH
Confidence 35788888999888999999998 56655543
No 156
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.74 E-value=98 Score=16.84 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHH---HHHHhh--cCCCC----CCCCCCHHHHHHHHHHHH
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR---LRWMNY--LRPDI----RRGNFTQEEDETIIKLHE 83 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~---~rw~~~--l~~~~----~~~~wt~eEd~~L~~~v~ 83 (87)
.+.|.++-..++.++. .| ..-..||..++ .+...+. .+|... +.+.. .....++++...|.+++.
T Consensus 16 ~~~s~~~r~~i~~~~~-~g-~s~~~ia~~lg--is~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~ 89 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DG-IRPCVISRQLR--VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKR 89 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHH
Confidence 3688998888888874 55 37889999998 4544332 333321 22211 122467766666666554
No 157
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=23.38 E-value=1e+02 Score=22.44 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 048610 15 GSWAPEEDRKLIAYIRRYGIW 35 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~ 35 (87)
.|||.|+-..|++....++.+
T Consensus 12 ~PWS~e~R~~l~~f~g~~kmN 32 (447)
T 2xsa_A 12 RDWRRDERATVMDWIAAAGMN 32 (447)
T ss_dssp SCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 489999999999999988654
No 158
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.18 E-value=1e+02 Score=16.77 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCccchhHHhCCCC
Q 048610 17 WAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLR 48 (87)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~R 48 (87)
...-|.+.|.+++..++ ++.++.|+.++-.|
T Consensus 38 l~~~Er~~I~~aL~~~~-GN~s~AA~~LGISR 68 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCD-RNVSETARRLNMHR 68 (81)
T ss_dssp HHHHHHHHHHHHHHHTT-SCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHhCCCH
Confidence 34456777888888888 68999999998533
No 159
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=21.82 E-value=17 Score=20.07 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCCccchhHHhCC
Q 048610 19 PEEDRKLIAYIRRYGIWNWSEMPKYAGL 46 (87)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (87)
.+|=..|+. | .+|...|..|+-
T Consensus 12 r~~l~~lL~-----g-~dW~~LA~~Lg~ 33 (85)
T 1ngr_A 12 REEVEKLLN-----G-DTWRHLAGELGY 33 (85)
T ss_dssp THHHHHHSC-----T-THHHHHHHHTTC
T ss_pred HHHHHHHhC-----c-CCHHHHHHHcCC
Confidence 355555655 6 599999999985
No 160
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=21.00 E-value=1.2e+02 Score=16.92 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCCccchhHHhCCCC
Q 048610 20 EEDRKLIAYIRRYGIWNWSEMPKYAGLLR 48 (87)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~R 48 (87)
-|...|..++..++ ++-...|+.++-.|
T Consensus 58 ~Er~~I~~aL~~~~-gn~~~AA~~LGIsR 85 (98)
T 1eto_A 58 VEQPLLDMVMQYTL-GNQTRAALMMGINR 85 (98)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHhCCCH
Confidence 46677777778887 58899999888433
No 161
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.72 E-value=96 Score=15.65 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHHHHHHhhcC
Q 048610 17 WAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (87)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~rw~~~l~ 62 (87)
.|+.|-+.|. ++ ..| ..-.+||..++ -+...++.+..+.+.
T Consensus 17 L~~~e~~vl~-l~-~~g-~s~~eIA~~l~--is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLS-AV-VAG-LPNKSIAYDLD--ISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHH-HH-TTT-CCHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 4555555443 44 445 48899999998 677777777665543
No 162
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.26 E-value=1.4e+02 Score=17.19 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhHHhCCCCChhhHH---HHHHhh--cCCCCC----CCCCCHHHHHHHHHHHHH
Q 048610 15 GSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR---LRWMNY--LRPDIR----RGNFTQEEDETIIKLHEQ 84 (87)
Q Consensus 15 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~---~rw~~~--l~~~~~----~~~wt~eEd~~L~~~v~~ 84 (87)
...|.++-..++.++. .| ..-..||+.++ .+...+. .+|... +.+... ....|++....|++++.+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4689999888888884 56 47889999998 5554443 233321 222221 234788888888887754
Done!