BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048612
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSD 60
MVKET YYD+LGV P+A++EE++KAY A + HPDKNPN+ E+F+ + +AY+VLSD
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSD 58
Query: 61 PFQREAYDKNG 71
+RE YDK G
Sbjct: 59 AKKRELYDKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSD 60
MVKET YYD+LGV P AS+ E++KAY A + HPDKNP+ AE+F+ + +AY+VLSD
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSD 60
Query: 61 PFQREAYDKNG 71
+R+ YD+ G
Sbjct: 61 EKKRQIYDQGG 71
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY ILGV +AS++EI+KAYY A++ HPD N +DP+A E+F L EAY+VLSD +R+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 66 AYDKNG 71
YD G
Sbjct: 68 QYDAYG 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSD 60
MVKET+ YD+LGV+PSA+E+E++K Y A + HPDK D E+F+ + EA+++L+D
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND 60
Query: 61 PFQREAYDKNG 71
P +RE YD+ G
Sbjct: 61 PQKREIYDQYG 71
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY+ILGV+ +A E EIRKAY A + HPD+N D +A +F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDKNGKYSISR----ETMLDPTAVFALLFGSELFEDYIG 101
AYD+ G + + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY+ILGV+ +A E EIRKAY A + HPD+N D +A +F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDKNGKYSISR----ETMLDPTAVFALLFGSELFEDYIG 101
AYD+ G + + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 7 YYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAE-RFQVLGEAYQVLSDPFQRE 65
YY+IL V SAS ++I+KAY KA Q HPDKNP++ + AE +F+ + EAY+VLSD +RE
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 66 AYDKNGKYSIS 76
YD+ G+ ++
Sbjct: 64 IYDRYGREGLT 74
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 7 YYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAE-RFQVLGEAYQVLSDPFQRE 65
YY++LGV SAS E+I+KAY A + HPDKNP++ + AE +F+++ EAY+VLSD +R
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 66 AYDKNG 71
YD+ G
Sbjct: 71 LYDRAG 76
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY+ILGV+ +A E EIRKAY A + HPD+N D +A +F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDKNG 71
AYD+ G
Sbjct: 64 AYDQYG 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY LG+ AS+EEI++AY +A + HPDKN +P A E+F+ + EAY VLSDP +RE
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 66 AYDKNGK 72
+D+ G+
Sbjct: 63 IFDRYGE 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY+ILGV+ AS+E+++KAY A + HPDKN + P A E F+ +G AY VLS+P +R+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 66 AYDKNG 71
YD+ G
Sbjct: 67 QYDQFG 72
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 7 YYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREA 66
+Y +LGV+ +AS EIR+A+ A ++HPDKNPN+P A F + AY+VL D R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 67 YDKNGK 72
YDK G+
Sbjct: 64 YDKYGE 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 7 YYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREA 66
+Y +LGV+ +AS EIR+A+ A ++HPDKNPN+P A F + AY+VL D R+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 67 YDKNGK 72
YDK G+
Sbjct: 83 YDKYGE 88
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 7 YYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREA 66
YYDILGV SASE +I+KA++ A + HPDKN P A +F+ + EAY+ LSD +R+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 67 YDKNG 71
YD G
Sbjct: 68 YDTLG 72
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 47/64 (73%)
Query: 8 YDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAY 67
Y +LG++ +A+ ++I+K+Y A + HPDKNP++P+AA++F+ + A+ +L+D +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 68 DKNG 71
DK G
Sbjct: 80 DKYG 83
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 5 TEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAE-RFQVLGEAYQVLSDPFQ 63
+YY++L V AS E I+KAY A + HPDKNP + + AE RF+ + EAY+VLSD +
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 64 REAYDKNG 71
R+ YD+ G
Sbjct: 69 RDIYDRYG 76
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 5 TEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQR 64
T YD+LGV +A++ +I+ AYY + HPD+N +AAERF + +AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 65 EAYDK 69
YD+
Sbjct: 77 RKYDR 81
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 8 YDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAY 67
Y +LGV+ +AS+ +I+KAY AR+ HPDKN DP A +RF + +AY++LS+ +R Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 68 DKNG 71
D G
Sbjct: 79 DHYG 82
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY +LG + +S E+I + ++A + HPDK+P +P+A E FQ L +A ++L++ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 66 AYD 68
YD
Sbjct: 81 RYD 83
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQRE 65
+YY I+GV P+ + I+ AY AR+ HPD + +P A RF+ + EA++VLSD +R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 66 AYDK 69
YD+
Sbjct: 65 EYDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 41/166 (24%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPD-KNPNDPQAAERFQVLGEAYQVLSDPFQR 64
+YY ILGV P+ + I+ AY AR+ HPD ND +A +F+ L EA++VL D +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA--KFKDLAEAWEVLKDEQRR 86
Query: 65 EAYDK------NGKYSISRET------MLDPTAVFALLFGSELFEDYIGHLA-------- 104
YD+ + + R+T D +F+ +FG + + H A
Sbjct: 87 AEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIE 146
Query: 105 VASMASTELAR------------------ESDNPEKLNDKLKASVV 132
VA LA ES+ P+ LN K+ A VV
Sbjct: 147 VAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVV 192
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPN---DPQAAERFQVLGEAYQVLSDPF 62
+YY ILGV +A ++EI KAY A Q HPD N +A ++F + A +VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 QREAYD 68
R+ +D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPN---DPQAAERFQVLGEAYQVLSDPF 62
+YY ILGV +A ++EI KAY A Q HPD N +A ++F + A +VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 QREAYD 68
R+ +D
Sbjct: 443 XRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 8 YDILGVNPSA-SEEEIRKAYYLKARQVHPDKNPNDPQ---AAERFQVLGEAYQVLSDPFQ 63
YD+L VN ++++ KAY AR+ HPD+ N + A ERF+V+ AY+ L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 64 REAYD 68
+ YD
Sbjct: 78 KTNYD 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDK 37
+ +D+LGV P AS +E+ KAY A +HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 6 EYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPND------PQAAERFQVLGEAYQVLS 59
++Y ILG +PSA+ ++++ Y HPDK D + ++F + +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 60 DPFQREAYD 68
+ + YD
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 ETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAA------ERFQVLGEAYQV 57
+ ++Y ILG +PSA+ ++++ Y HPDK D A ++F + +A+++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 58 LSDPFQREAYD 68
L + ++ YD
Sbjct: 75 LGNEETKKKYD 85
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 16 SASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAY 67
+ + +RK Y Q HPD Q +E+ L +AY L DP +R Y
Sbjct: 21 TIDQSRLRKEYRQLQAQHHPDMAQ---QGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 16 SASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAY 67
+ + +RK Y Q HPD Q +E+ L +AY L DP +R Y
Sbjct: 29 TIDQSRLRKEYRQLQAQHHPDMAQ---QGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|2B9W|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9X|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9Y|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BA9|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAB|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAC|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
Length = 424
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 35 PDKNP-NDPQAAERFQVLGEAYQVLSDPFQREAYDKNGKYSISRETMLDPTAVFALLFGS 93
P+K+P PQ Q LG Q+L+ +Q YD NG Y+ E ++ P F L G
Sbjct: 100 PEKDPVRGPQVMAAVQKLG---QLLATKYQ--GYDANGHYNKVHEDLMLPFDEFLALNGC 154
Query: 94 ELFED 98
E D
Sbjct: 155 EAARD 159
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
pdb|1V6S|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
Length = 390
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 15 PSASEEEIRKAYYLKARQV--------HPDKNPNDPQAAERFQVLGEAY 55
P SEE R+A L+ +V P + NDP+ + R+ LGEA+
Sbjct: 90 PPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAF 138
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate
Kinase In The Open Conformation
Length = 390
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 15 PSASEEEIRKAYYLKARQV--------HPDKNPNDPQAAERFQVLGEAY 55
P SEE R+A L+ +V P + NDP+ + R+ LGEA+
Sbjct: 90 PPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAF 138
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 9 DILGVNPSA--SEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSD 60
D+LG+ SA + +RKAY K ++ HPDK ++ E+ + + Y+ + D
Sbjct: 15 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMED 64
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 9 DILGVNPSA--SEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSD 60
D+LG+ SA + +RKAY K ++ HPDK ++ E+ + + Y+ + D
Sbjct: 12 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMED 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,353,581
Number of Sequences: 62578
Number of extensions: 388062
Number of successful extensions: 1241
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 37
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)