BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048613
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/314 (63%), Positives = 236/314 (75%), Gaps = 5/314 (1%)
Query: 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQ 85
+GVCYG NNLP EV+ LY + IT+MRIYDPN+ L+ALRGSNIEL+LG+PN DLQ
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 86 ALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEA----ASFVLPAMQNIYNAIA 141
+L+NPS A SWVQ N+ F V+FRY+AVGNEISP + A FVLPAM+NI++AI
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 142 SANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYF 201
SA LQ Q KVSTAI +L+GNSYPPSAG+F D+ SY+ PI++FL +PLLANIYPYF
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 202 SYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSET 261
+Y G+ +DI L YALFTS V DG GY+NLFDA+LDALYSALE+A +EVVVSE+
Sbjct: 182 TYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSES 241
Query: 262 GWPSEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHF 321
GWPS G AAT DN TY N+I HV GTPKRP + IETYLFAMFDEN+K P E E+HF
Sbjct: 242 GWPSAGAFAATFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQP-EVEKHF 300
Query: 322 GLFSPNKQPKYKLD 335
GLF PNK KY L+
Sbjct: 301 GLFFPNKWQKYNLN 314
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/317 (57%), Positives = 236/317 (74%), Gaps = 9/317 (2%)
Query: 24 RPIGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGD 83
+PIGVCYG++ANNLPSDQ+V+ LY++N I KMRIY P+ AL+GSNIE++L +PN D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 84 LQALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEA---ASFVLPAMQNIYNAI 140
L+AL+NPS A+ WVQ+NI PDVKF+Y+AVGNE+ P E+ A FV PAM+NIYNA+
Sbjct: 61 LEALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 ASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPY 200
+SA LQ Q KVST+ + LL N+YPP F + S+I PI+ FL + PLLANIYPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 FSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSE 260
F +I +T + L YALF Q + GYQNLFDA +D++Y A EK G ++E++VSE
Sbjct: 181 FGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 261 TGWPSEGGDAATVDNANTYYKNMINHVS--AGTPKRPGKVIETYLFAMFDENQKGPAETE 318
+GWPSEG AAT+ NA TYY N+INHV AGTPK+PGK IETYLFAMFDEN+K +E
Sbjct: 237 SGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 319 RHFGLFSPNKQPKYKLD 335
+HFGLF+P+++PKY+L+
Sbjct: 297 KHFGLFNPDQRPKYQLN 313
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/317 (57%), Positives = 235/317 (74%), Gaps = 9/317 (2%)
Query: 24 RPIGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGD 83
+PIGVCYG++ANNLPSDQ+V+ LY++N I KMRIY P+ AL+GSNIE++L +PN D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 84 LQALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEA---ASFVLPAMQNIYNAI 140
L+AL+NPS A+ WVQ+NI PDVKF+Y+AVGNE+ P E+ A FV PAM+NIYNA+
Sbjct: 61 LEALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 ASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPY 200
+SA LQ Q KVST+ + LL N+YPP F + S+I PI+ FL + PLLANIYPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 FSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSE 260
F +I +T + L YALF Q + GYQNLFDA +D++Y A EK G ++E++VS
Sbjct: 181 FGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 261 TGWPSEGGDAATVDNANTYYKNMINHVS--AGTPKRPGKVIETYLFAMFDENQKGPAETE 318
+GWPSEG AAT+ NA TYY N+INHV AGTPK+PGK IETYLFAMFDEN+K +E
Sbjct: 237 SGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 319 RHFGLFSPNKQPKYKLD 335
+HFGLF+P+++PKY+L+
Sbjct: 297 KHFGLFNPDQRPKYQLN 313
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 233/312 (74%), Gaps = 3/312 (0%)
Query: 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQ 85
IGVCYG + NNLP EVV+LY SN I +MR+YDPN+ LQALR SNI+++L +P D+Q
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 AL-SNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASAN 144
+L SNPS A W++ N++A+ P V FRY+AVGNE+ P + A ++LPAM+NIYNA++SA
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 145 LQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYI 204
LQ Q KVSTA+ T +LG SYPPSAG+F+ A +Y+ PIVQFL GAPLL N+YPYFSY
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 205 GDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWP 264
G+ I L YALFT+ G VQDG YQNLFDA +DA+++ALE+ G +V VVVSE+GWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 265 SEGGDA-ATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGL 323
S GG A A+ NA TY +N+I HV GTP+RPGK IE Y+F MF+ENQK E++FGL
Sbjct: 241 SAGGGAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKA-GGIEQNFGL 299
Query: 324 FSPNKQPKYKLD 335
F PNKQP Y++
Sbjct: 300 FYPNKQPVYQIS 311
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 297 bits (761), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 217/311 (69%), Gaps = 7/311 (2%)
Query: 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQ 85
IGVCYG ANNLP+ VV+++ SNGI MR+Y PN+ LQA+ G+ I +++G PN L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 ALSNPSVASS-WVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASAN 144
L+ A++ WV++NI A+ P V FRYV VGNE++ A ++PAM+N++ A+ +A
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVA--GGATRNLVPAMKNVHGALVAAG 117
Query: 145 LQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYI 204
L KV+T++ ++LG PPSAGSF A +++GP+VQFL +T APL+ANIYPY ++
Sbjct: 118 L-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWA 176
Query: 205 GDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWP 264
+ + + YALF + GT V+DG+ GYQNLFD ++DA Y+A+ K G V++VVSE+GWP
Sbjct: 177 YNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWP 236
Query: 265 SEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLF 324
S GG AAT NA Y +++INHV GTP+ PG IETY+FAMF+ENQK + E+++GLF
Sbjct: 237 SGGGTAATPANARFYNQHLINHVGRGTPRHPGA-IETYIFAMFNENQK-DSGVEQNWGLF 294
Query: 325 SPNKQPKYKLD 335
PN Q Y ++
Sbjct: 295 YPNMQHVYPIN 305
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/312 (51%), Positives = 207/312 (66%), Gaps = 11/312 (3%)
Query: 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQ 85
IGVCYG + NNLPS +VV LY S GI MRIY + L ALR S I L+L I N L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 ALS-NPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASAN 144
++ + S A+SWVQNN+ + P V +Y+A GNE+ A +LPAM+N+ NA SA
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGG--ATQSILPAMRNL-NAALSAA 117
Query: 145 LQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYI 204
KVST+I+ + NS+PPSAG F N+Y+ + + L TGAPLLAN+YPYF+Y
Sbjct: 118 GLGAIKVSTSIRFDEVANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYPYFAYR 174
Query: 205 GDTKDIRLDYALFTSQGTPVQD--GSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETG 262
+ I L+YA F GT V+D L Y +LFDA +DA+Y+ALEKAGAP V+VVVSE+G
Sbjct: 175 DNPGSISLNYATF-QPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESG 233
Query: 263 WPSEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFG 322
WPS GG AA+ NA TY + +INHV GTPK+ + +ETY+FAMF+ENQK TER FG
Sbjct: 234 WPSAGGFAASAGNARTYNQGLINHVGGGTPKKR-EALETYIFAMFNENQKTGDATERSFG 292
Query: 323 LFSPNKQPKYKL 334
LF+P+K P Y +
Sbjct: 293 LFNPDKSPAYNI 304
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 220 QGTPVQD-GSLGYQNLFDASLDALYSALEKAGAPDVEVVVSE 260
QG PV G G+ N+ S+D + A+E+ + DV++ V+E
Sbjct: 199 QGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTE 240
>pdb|1ZKX|A Chain A, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
pdb|1ZKX|B Chain B, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
Length = 420
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZKW|A Chain A, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
pdb|1ZKW|B Chain B, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
Length = 420
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZN3|A Chain A, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
pdb|1ZN3|B Chain B, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
Length = 420
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1T3C|A Chain A, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
pdb|1T3C|B Chain B, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
Length = 421
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1T3A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
pdb|1T3A|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
Length = 421
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|3D3X|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
pdb|3D3X|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
Length = 427
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZL5|A Chain A, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL5|B Chain B, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|3IYJ|F Chain F, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|A Chain A, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|B Chain B, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|C Chain C, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|D Chain D, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|E Chain E, Bovine Papillomavirus Type 1 Outer Capsid
Length = 495
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 84 LQALSNPSVASSW---VQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAI 140
LQ L PSV +W VQ + D +RY+ SP+ + AS V+PA ++ Y
Sbjct: 389 LQGLM-PSVLENWEIGVQPPTSSILEDT-YRYIE-----SPATKCASNVIPAKEDPYAGF 441
Query: 141 ASANLQAQTKVSTAIQTSLLGNSYPPSAGS 170
N+ + K+S + LG + G+
Sbjct: 442 KFWNIDLKEKLSLDLDQFPLGRRFLAQQGA 471
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 46 LYHSNGIT-KMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILA 103
LY + GIT K I P + +RG+NIE L DL ++ S S+ + N+LA
Sbjct: 221 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,825,423
Number of Sequences: 62578
Number of extensions: 420994
Number of successful extensions: 726
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 27
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)