Query 048613
Match_columns 336
No_of_seqs 122 out of 1218
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.5E-80 3.3E-85 593.6 17.9 307 26-335 1-309 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.8E-50 8.2E-55 365.9 21.4 248 23-328 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.3 3.1E-10 6.8E-15 109.7 18.6 242 40-334 26-329 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.0 6.6E-09 1.4E-13 98.8 15.6 126 26-154 30-182 (314)
5 COG3867 Arabinogalactan endo-1 98.4 3.8E-06 8.3E-11 79.2 12.6 215 39-305 64-341 (403)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00016 3.4E-09 75.8 24.4 234 44-333 319-584 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.00067 1.5E-08 62.9 19.5 119 26-146 11-165 (281)
8 smart00633 Glyco_10 Glycosyl h 97.9 0.001 2.2E-08 62.2 17.3 78 244-334 173-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.4 0.0098 2.1E-07 55.2 16.4 164 108-330 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.2 0.015 3.3E-07 55.3 16.0 120 25-154 17-157 (298)
11 PRK09936 hypothetical protein; 94.8 3.4 7.4E-05 39.5 17.6 59 25-83 21-96 (296)
12 PRK10340 ebgA cryptic beta-D-g 93.3 3.9 8.5E-05 45.9 17.3 97 26-122 337-453 (1021)
13 PF00232 Glyco_hydro_1: Glycos 91.2 0.082 1.8E-06 53.7 0.9 278 41-333 61-442 (455)
14 TIGR03356 BGL beta-galactosida 85.7 2.5 5.4E-05 42.6 7.3 78 41-120 57-163 (427)
15 PF02449 Glyco_hydro_42: Beta- 84.0 7.1 0.00015 38.4 9.5 81 41-121 13-140 (374)
16 PRK13511 6-phospho-beta-galact 79.1 6.8 0.00015 40.0 7.6 45 41-85 57-120 (469)
17 cd02875 GH18_chitobiase Chitob 78.2 12 0.00026 36.8 8.8 93 51-145 55-150 (358)
18 PLN02998 beta-glucosidase 77.9 6.5 0.00014 40.6 7.0 72 251-329 390-466 (497)
19 PF02449 Glyco_hydro_42: Beta- 75.2 28 0.0006 34.2 10.4 56 125-200 207-262 (374)
20 PLN02814 beta-glucosidase 74.9 8.6 0.00019 39.8 6.9 72 251-329 385-461 (504)
21 COG3934 Endo-beta-mannanase [C 73.5 11 0.00024 38.6 7.0 253 25-333 5-311 (587)
22 PLN02849 beta-glucosidase 70.8 13 0.00027 38.5 7.0 72 251-329 383-461 (503)
23 PF03662 Glyco_hydro_79n: Glyc 60.1 12 0.00025 36.5 4.1 81 63-143 113-203 (319)
24 PRK09593 arb 6-phospho-beta-gl 60.0 21 0.00046 36.6 6.3 70 254-329 369-448 (478)
25 cd06545 GH18_3CO4_chitinase Th 58.4 34 0.00074 31.6 6.9 80 63-145 50-133 (253)
26 PF02055 Glyco_hydro_30: O-Gly 58.2 1.9E+02 0.0042 29.9 12.8 84 70-153 166-278 (496)
27 PRK09589 celA 6-phospho-beta-g 57.9 30 0.00065 35.5 6.9 71 253-329 367-447 (476)
28 PRK09525 lacZ beta-D-galactosi 57.6 76 0.0016 35.9 10.5 96 26-121 353-465 (1027)
29 cd00598 GH18_chitinase-like Th 57.2 27 0.00058 30.7 5.8 81 64-145 54-142 (210)
30 KOG0626 Beta-glucosidase, lact 56.6 37 0.00081 35.2 7.2 76 251-333 405-498 (524)
31 PF14587 Glyco_hydr_30_2: O-Gl 55.5 2.3E+02 0.005 28.4 13.9 93 63-157 108-228 (384)
32 TIGR01233 lacG 6-phospho-beta- 54.7 38 0.00083 34.6 7.0 69 254-329 368-444 (467)
33 PF00925 GTP_cyclohydro2: GTP 53.7 16 0.00035 32.0 3.6 38 43-80 131-168 (169)
34 PF12876 Cellulase-like: Sugar 53.3 39 0.00084 26.0 5.4 49 104-154 5-63 (88)
35 COG0621 MiaB 2-methylthioadeni 52.2 1.2E+02 0.0026 30.9 10.0 63 122-203 275-337 (437)
36 PRK09852 cryptic 6-phospho-bet 52.1 46 0.001 34.1 7.1 71 253-329 365-444 (474)
37 cd06598 GH31_transferase_CtsZ 51.7 1.9E+02 0.0042 27.7 11.1 71 125-203 22-96 (317)
38 cd02874 GH18_CFLE_spore_hydrol 51.7 1.6E+02 0.0034 28.0 10.4 82 62-145 48-138 (313)
39 PF01229 Glyco_hydro_39: Glyco 50.7 2.6E+02 0.0057 28.5 12.5 179 112-332 158-351 (486)
40 PF00331 Glyco_hydro_10: Glyco 48.7 18 0.00038 35.0 3.3 213 63-333 63-312 (320)
41 smart00481 POLIIIAc DNA polyme 48.3 74 0.0016 22.7 5.9 44 38-81 15-63 (67)
42 TIGR00505 ribA GTP cyclohydrol 47.4 30 0.00065 31.0 4.4 36 44-79 131-166 (191)
43 PRK00393 ribA GTP cyclohydrola 47.0 30 0.00066 31.1 4.4 37 44-80 134-170 (197)
44 PF05990 DUF900: Alpha/beta hy 46.8 57 0.0012 30.0 6.3 38 248-288 44-87 (233)
45 TIGR01579 MiaB-like-C MiaB-lik 46.5 1.8E+02 0.0039 28.9 10.3 137 38-203 167-330 (414)
46 COG4782 Uncharacterized protei 46.1 69 0.0015 31.8 6.9 39 247-288 141-185 (377)
47 PRK15014 6-phospho-beta-glucos 44.3 36 0.00078 35.0 4.9 71 253-329 368-448 (477)
48 cd02872 GH18_chitolectin_chito 42.8 1.4E+02 0.0031 28.8 8.8 19 125-143 132-150 (362)
49 PRK14042 pyruvate carboxylase 41.6 2.8E+02 0.0061 29.5 11.1 93 40-140 94-196 (596)
50 PRK14330 (dimethylallyl)adenos 41.5 2.9E+02 0.0063 27.7 11.0 74 110-202 250-331 (434)
51 PRK14332 (dimethylallyl)adenos 41.1 3.7E+02 0.0079 27.3 11.6 136 39-203 184-343 (449)
52 PRK12485 bifunctional 3,4-dihy 40.4 35 0.00076 33.9 4.0 35 44-79 331-365 (369)
53 PRK14338 (dimethylallyl)adenos 39.7 1.7E+02 0.0037 29.7 9.0 135 39-202 185-346 (459)
54 PRK14327 (dimethylallyl)adenos 38.1 2.3E+02 0.0051 29.4 9.8 135 39-202 242-403 (509)
55 PRK14019 bifunctional 3,4-dihy 37.8 40 0.00088 33.4 4.0 36 44-80 328-363 (367)
56 PF13547 GTA_TIM: GTA TIM-barr 37.7 75 0.0016 30.5 5.6 82 108-203 18-112 (299)
57 PF06180 CbiK: Cobalt chelatas 37.4 3.6E+02 0.0078 25.4 11.2 139 36-203 56-208 (262)
58 PF14488 DUF4434: Domain of un 36.4 2.2E+02 0.0047 24.8 8.0 100 41-143 23-151 (166)
59 cd00641 GTP_cyclohydro2 GTP cy 36.3 55 0.0012 29.2 4.3 37 44-80 133-169 (193)
60 PF01055 Glyco_hydro_31: Glyco 35.6 2E+02 0.0043 28.7 8.7 131 125-306 41-178 (441)
61 PF04909 Amidohydro_2: Amidohy 34.7 1.2E+02 0.0026 27.2 6.5 55 129-198 83-138 (273)
62 PRK12331 oxaloacetate decarbox 34.1 4.9E+02 0.011 26.5 11.2 90 43-140 101-196 (448)
63 PRK12581 oxaloacetate decarbox 33.6 3.8E+02 0.0083 27.6 10.3 39 44-82 111-155 (468)
64 PRK14336 (dimethylallyl)adenos 33.4 2.2E+02 0.0048 28.5 8.6 61 123-202 255-315 (418)
65 PRK14334 (dimethylallyl)adenos 33.2 2.8E+02 0.006 28.0 9.3 134 39-201 168-327 (440)
66 PRK09318 bifunctional 3,4-dihy 32.3 64 0.0014 32.3 4.4 38 44-81 320-357 (387)
67 PRK09314 bifunctional 3,4-dihy 32.1 62 0.0013 31.8 4.2 34 43-76 300-334 (339)
68 PRK14328 (dimethylallyl)adenos 31.9 2.1E+02 0.0045 28.9 8.1 74 110-202 257-338 (439)
69 KOG0078 GTP-binding protein SE 31.7 87 0.0019 28.6 4.8 61 54-119 62-127 (207)
70 PRK08815 GTP cyclohydrolase; P 31.2 67 0.0015 32.0 4.3 38 44-81 305-342 (375)
71 PRK03941 NTPase; Reviewed 30.5 3E+02 0.0066 24.4 7.9 54 97-153 16-69 (174)
72 PRK14040 oxaloacetate decarbox 30.5 4.7E+02 0.01 27.8 10.7 92 41-140 100-197 (593)
73 PRK09311 bifunctional 3,4-dihy 30.4 71 0.0015 32.2 4.4 38 44-81 339-376 (402)
74 PRK09319 bifunctional 3,4-dihy 29.8 72 0.0016 33.5 4.4 96 44-145 343-441 (555)
75 PLN02831 Bifunctional GTP cycl 29.8 72 0.0016 32.6 4.4 38 44-81 373-410 (450)
76 COG2730 BglC Endoglucanase [Ca 28.6 5.1E+02 0.011 25.8 10.2 102 41-143 76-218 (407)
77 PF14871 GHL6: Hypothetical gl 28.4 1.4E+02 0.0029 25.1 5.2 43 40-82 2-67 (132)
78 TIGR01125 MiaB-like tRNA modif 28.2 4.3E+02 0.0094 26.4 9.7 138 38-203 164-327 (430)
79 PRK14339 (dimethylallyl)adenos 27.8 4.6E+02 0.01 26.2 9.8 61 123-202 261-321 (420)
80 TIGR03632 bact_S11 30S ribosom 27.1 1.3E+02 0.0029 24.3 4.8 37 41-77 50-91 (108)
81 PRK09282 pyruvate carboxylase 26.4 7.6E+02 0.016 26.2 11.4 92 41-140 99-196 (592)
82 TIGR00510 lipA lipoate synthas 26.2 4.8E+02 0.01 25.1 9.2 132 43-204 99-248 (302)
83 TIGR03822 AblA_like_2 lysine-2 26.2 3.4E+02 0.0074 26.1 8.3 20 62-81 187-206 (321)
84 cd04743 NPD_PKS 2-Nitropropane 25.7 5.6E+02 0.012 24.9 9.5 78 25-119 57-134 (320)
85 TIGR01235 pyruv_carbox pyruvat 25.4 5.5E+02 0.012 29.6 10.7 53 28-82 617-675 (1143)
86 COG1433 Uncharacterized conser 24.8 1.6E+02 0.0034 24.6 4.8 40 41-80 55-94 (121)
87 COG2159 Predicted metal-depend 24.6 3.4E+02 0.0074 25.8 7.8 95 130-268 112-209 (293)
88 PRK11449 putative deoxyribonuc 24.5 3E+02 0.0065 25.6 7.3 36 252-288 89-124 (258)
89 COG4213 XylF ABC-type xylose t 23.3 2.2E+02 0.0048 27.9 6.1 73 63-153 176-249 (341)
90 PF08002 DUF1697: Protein of u 23.1 68 0.0015 27.1 2.4 30 27-58 10-39 (137)
91 PRK07198 hypothetical protein; 23.0 72 0.0016 32.1 2.8 38 44-81 338-376 (418)
92 COG0807 RibA GTP cyclohydrolas 22.9 1.5E+02 0.0032 26.8 4.6 40 44-83 133-172 (193)
93 TIGR00089 RNA modification enz 22.0 7.5E+02 0.016 24.6 10.1 136 38-202 168-330 (429)
94 COG1453 Predicted oxidoreducta 21.9 60 0.0013 32.3 2.0 34 245-281 188-223 (391)
95 TIGR02495 NrdG2 anaerobic ribo 21.6 5.2E+02 0.011 22.2 10.7 40 38-77 47-95 (191)
96 PRK14337 (dimethylallyl)adenos 21.0 5.4E+02 0.012 25.9 8.9 74 110-202 259-340 (446)
97 cd06592 GH31_glucosidase_KIAA1 21.0 6.1E+02 0.013 24.1 8.8 69 123-203 26-96 (303)
98 PF03102 NeuB: NeuB family; I 20.9 2.9E+02 0.0063 25.7 6.3 98 41-156 79-180 (241)
99 TIGR03581 EF_0839 conserved hy 20.9 2.1E+02 0.0046 26.5 5.2 50 25-74 118-179 (236)
100 TIGR03628 arch_S11P archaeal r 20.8 2E+02 0.0044 23.7 4.6 37 41-77 53-102 (114)
101 TIGR03569 NeuB_NnaB N-acetylne 20.8 7.9E+02 0.017 24.0 10.0 98 41-155 99-201 (329)
102 PF00411 Ribosomal_S11: Riboso 20.8 1.8E+02 0.0039 23.6 4.4 37 41-77 50-91 (110)
103 cd06418 GH25_BacA-like BacA is 20.7 6.4E+02 0.014 22.8 11.9 105 38-145 21-142 (212)
104 PRK09856 fructoselysine 3-epim 20.3 6.6E+02 0.014 22.9 9.2 120 131-282 47-170 (275)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.5e-80 Score=593.58 Aligned_cols=307 Identities=53% Similarity=0.927 Sum_probs=255.3
Q ss_pred eeeEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCCCcccCCC-CHHHHHHHHHHhhhhc
Q 048613 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALS-NPSVASSWVQNNILAF 104 (336)
Q Consensus 26 ~Gi~Y~~~~~~~ps~~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a-~~~~a~~w~~~~i~~~ 104 (336)
+|||||+.++++|++.+++++|++++|++||+|++|+++|+|++++|++|++||+|+++++++ ++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred CCCceEEEEEeccccCCC-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHH
Q 048613 105 TPDVKFRYVAVGNEISPS-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIV 183 (336)
Q Consensus 105 ~~~~~I~~I~VGNE~l~~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~l 183 (336)
+|..+|+.|+||||++.. +.. .|+++|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.+.|.+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 999999999999999987 333 99999999999999999998999999999999999999999999999889999999
Q ss_pred HHhhhcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEecccc
Q 048613 184 QFLKQTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGW 263 (336)
Q Consensus 184 dfl~~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGW 263 (336)
+||.++++|||+|+||||.+..+|..++++||+|++.+... |+++.|+|+||+|+|++++||+++|+++++|+|+||||
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGW 237 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGW 237 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE--
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEecccc
Confidence 99999999999999999999999999999999999877666 77889999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCceeeeCCCCCccccCC
Q 048613 264 PSEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLFSPNKQPKYKLD 335 (336)
Q Consensus 264 Ps~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~~E~~wGlf~~d~~~K~~l~ 335 (336)
||+|+..++.+||+.|++++++++.+|||+|++.++++||||+|||+||+++.+|+|||||++||+|||+|+
T Consensus 238 Ps~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~ 309 (310)
T PF00332_consen 238 PSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLD 309 (310)
T ss_dssp -SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS---
T ss_pred ccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCC
Confidence 999999999999999999999999999999999999999999999999997779999999999999999985
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-50 Score=365.89 Aligned_cols=248 Identities=21% Similarity=0.295 Sum_probs=201.1
Q ss_pred CCCeeeEecCCCCCC--CCHHHHHHHHHhC-CC-CEEEEccCCh----hHHHHHhcCCcEEEEecCCCcccCCCCHHHHH
Q 048613 23 TRPIGVCYGRVANNL--PSDQEVVNLYHSN-GI-TKMRIYDPNE----PTLQALRGSNIELMLGIPNGDLQALSNPSVAS 94 (336)
Q Consensus 23 ~~~~Gi~Y~~~~~~~--ps~~~v~~~l~~~-~~-~~VRlY~~d~----~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~ 94 (336)
-++++|+|+||.+++ |+.+++..+|.+. .+ ..||+|++|| +|++|+...|+||+||||..+.-+.+ .+.
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~-~~~-- 119 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA-VEK-- 119 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh-HHH--
Confidence 358999999998885 7779998777652 33 4999999885 79999999999999999997644443 221
Q ss_pred HHHHHhhhhcCCCceEEEEEeccccCCC-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccccc
Q 048613 95 SWVQNNILAFTPDVKFRYVAVGNEISPS-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFAD 173 (336)
Q Consensus 95 ~w~~~~i~~~~~~~~I~~I~VGNE~l~~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~ 173 (336)
-+...+.++..++.|++|+||||+|+| +.++++|+++|..||++|+.+|+ ..||+|+|+|..|.+
T Consensus 120 -til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy--~gpV~T~dsw~~~~~----------- 185 (305)
T COG5309 120 -TILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGY--DGPVTTVDSWNVVIN----------- 185 (305)
T ss_pred -HHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCC--CCceeecccceeeeC-----------
Confidence 144567788889999999999999999 99999999999999999999999 469999999998876
Q ss_pred ccccccchHHHHhhhcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCC
Q 048613 174 NANSYIGPIVQFLKQTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPD 253 (336)
Q Consensus 174 ~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~ 253 (336)
+|.||+..|| +|+|.||||+.... .++.+ .++-.|++-++.+ + ..+
T Consensus 186 --np~l~~~SDf-------ia~N~~aYwd~~~~-----------------a~~~~----~f~~~q~e~vqsa---~-g~~ 231 (305)
T COG5309 186 --NPELCQASDF-------IAANAHAYWDGQTV-----------------ANAAG----TFLLEQLERVQSA---C-GTK 231 (305)
T ss_pred --ChHHhhhhhh-------hhcccchhccccch-----------------hhhhh----HHHHHHHHHHHHh---c-CCC
Confidence 3677777777 79999999996321 11222 2343445555433 2 344
Q ss_pred ceEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCC--CCCCceeeeCCC
Q 048613 254 VEVVVSETGWPSEGGD----AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPA--ETERHFGLFSPN 327 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~--~~E~~wGlf~~d 327 (336)
|+++|+||||||.|.. .||++||+.|+++++|.++. ++.++|+||+|||+||..+ ++|+|||++..+
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~s~ 304 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLSSD 304 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-------cCccEEEeeeccccccCccccchhhceeeeccC
Confidence 9999999999999987 89999999999999999952 5899999999999999864 899999999987
Q ss_pred C
Q 048613 328 K 328 (336)
Q Consensus 328 ~ 328 (336)
|
T Consensus 305 ~ 305 (305)
T COG5309 305 R 305 (305)
T ss_pred C
Confidence 5
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.27 E-value=3.1e-10 Score=109.72 Aligned_cols=242 Identities=18% Similarity=0.233 Sum_probs=126.7
Q ss_pred HHHHHHHHHhCCCCEEEEcc---------CC-hh---HHHHHhcCCcEEEEecCCCc---------cc-C-CC-CHHHHH
Q 048613 40 DQEVVNLYHSNGITKMRIYD---------PN-EP---TLQALRGSNIELMLGIPNGD---------LQ-A-LS-NPSVAS 94 (336)
Q Consensus 40 ~~~v~~~l~~~~~~~VRlY~---------~d-~~---vl~A~~~~gi~v~lGv~~~~---------~~-~-~a-~~~~a~ 94 (336)
..++.++||..|++.||+-- +| .. ..+.+++.||+|+|-.--+| .+ + .. +..+..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 47899999999999888852 11 13 44455679999999988764 11 1 11 233332
Q ss_pred HHHHHh----hhhcC-CCceEEEEEeccccCCC-------CcchhhHHHHHHHHHHHHHhcCCCCceEEEe--eeecccc
Q 048613 95 SWVQNN----ILAFT-PDVKFRYVAVGNEISPS-------DEAASFVLPAMQNIYNAIASANLQAQTKVST--AIQTSLL 160 (336)
Q Consensus 95 ~w~~~~----i~~~~-~~~~I~~I~VGNE~l~~-------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT--~~~~~~~ 160 (336)
+.+.+. +.... .+..++.|-||||.-.+ ....+.+...++.-.+++|+.+- +++|-. +...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDN- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSH-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCch-
Confidence 223222 11110 23678899999996442 23578888888888888888654 455532 221111
Q ss_pred ccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHH
Q 048613 161 GNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLD 240 (336)
Q Consensus 161 ~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~d 240 (336)
..++--.......-+|| |+++++.||||... .+.+..+++
T Consensus 183 --------~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~---------------------------l~~l~~~l~ 222 (332)
T PF07745_consen 183 --------DLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT---------------------------LEDLKNNLN 222 (332)
T ss_dssp --------HHHHHHHHHHHHTTGG------SEEEEEE-STTST----------------------------HHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch---------------------------HHHHHHHHH
Confidence 00000001111122555 89999999999941 011222222
Q ss_pred HHHHHHHHhCCCCceEEEeccccCCCCCC-----------------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEE
Q 048613 241 ALYSALEKAGAPDVEVVVSETGWPSEGGD-----------------AATVDNANTYYKNMINHVSAGTPKRPGKVIETYL 303 (336)
Q Consensus 241 a~~~a~~~~g~~~~~v~I~ETGWPs~G~~-----------------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~ 303 (336)
.+ .++. +|+|+|.|||||..... .+|++.|+.|++++++.+.. .| .+++..+||
T Consensus 223 ~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p--~~~g~GvfY 293 (332)
T PF07745_consen 223 DL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VP--NGGGLGVFY 293 (332)
T ss_dssp HH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEE
T ss_pred HH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hc--cCCeEEEEe
Confidence 22 2333 68999999999998211 35899999999999988842 11 135788888
Q ss_pred EEeecCC------CCCCCCCCCceeeeCCCCCccccC
Q 048613 304 FAMFDEN------QKGPAETERHFGLFSPNKQPKYKL 334 (336)
Q Consensus 304 FeafDe~------wK~~~~~E~~wGlf~~d~~~K~~l 334 (336)
-|.---+ |..|..+|.. +||+.+|++--+|
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 7632111 1111234433 8999999886554
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.04 E-value=6.6e-09 Score=98.82 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=78.3
Q ss_pred eeeEecCCCCC-------CCC----HHHHHHHHHhCCCCEEEEccCCh-----hHHHHHhcCCcEEEEecCCCcccCCC-
Q 048613 26 IGVCYGRVANN-------LPS----DQEVVNLYHSNGITKMRIYDPNE-----PTLQALRGSNIELMLGIPNGDLQALS- 88 (336)
Q Consensus 26 ~Gi~Y~~~~~~-------~ps----~~~v~~~l~~~~~~~VRlY~~d~-----~vl~A~~~~gi~v~lGv~~~~~~~~a- 88 (336)
.||.|-|-++. ..+ +++.+..|+++|++.||+|..|+ ..+.++++.||-|++.+... ..++.
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 49999988762 212 24556789999999999999885 68999999999999999876 23333
Q ss_pred -CH------HHHHHHHHHhhhhcCCCceEEEEEeccccCCC---CcchhhHHHHHHHHHHHHHhcCCCCceEEEee
Q 048613 89 -NP------SVASSWVQNNILAFTPDVKFRYVAVGNEISPS---DEAASFVLPAMQNIYNAIASANLQAQTKVSTA 154 (336)
Q Consensus 89 -~~------~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~---~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~ 154 (336)
++ ....+ ....|..|..-+++-+..+|||++.. ...++.+-.+++++|+-+++.|+ +.|||+-+
T Consensus 109 ~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYs 182 (314)
T PF03198_consen 109 SDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYS 182 (314)
T ss_dssp TS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred CCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEE
Confidence 11 11122 22335555444899999999999986 23588999999999999999998 46999864
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=3.8e-06 Score=79.16 Aligned_cols=215 Identities=18% Similarity=0.322 Sum_probs=124.9
Q ss_pred CHHHHHHHHHhCCCCEEEEc------cCC--------h------hHHHHHhcCCcEEEEecCCCcccCCCC---HHHHHH
Q 048613 39 SDQEVVNLYHSNGITKMRIY------DPN--------E------PTLQALRGSNIELMLGIPNGDLQALSN---PSVASS 95 (336)
Q Consensus 39 s~~~v~~~l~~~~~~~VRlY------~~d--------~------~vl~A~~~~gi~v~lGv~~~~~~~~a~---~~~a~~ 95 (336)
-+++..++||..|++.||+- +.| . ++.+.+++.||||++-.-.+| ..++ +..-+.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSD--fwaDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSD--FWADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchh--hccChhhcCCcHH
Confidence 45788899999999998884 333 1 234445678999999887654 1111 111112
Q ss_pred HHH-------HhhhhcC---------CCceEEEEEeccccCCC------Cc-chhhHHHHHHHHHHHHHhcCCCCceEEE
Q 048613 96 WVQ-------NNILAFT---------PDVKFRYVAVGNEISPS------DE-AASFVLPAMQNIYNAIASANLQAQTKVS 152 (336)
Q Consensus 96 w~~-------~~i~~~~---------~~~~I~~I~VGNE~l~~------~~-s~~~L~~~i~~vr~~L~~~gl~~~i~Vt 152 (336)
|.. ..|-.|- -+..+..|-||||.-.. +. ..+.+...++.--+++|... .+|+|-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEE
Confidence 222 2221111 13567789999997542 12 45566666666666666543 467775
Q ss_pred eeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccc
Q 048613 153 TAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQ 232 (336)
Q Consensus 153 T~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~ 232 (336)
.- +.+.-.+ +.|+--....-+.-+|| |+|+.--||||...-+
T Consensus 220 lH-----la~g~~n--~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~-------------------------- 261 (403)
T COG3867 220 LH-----LAEGENN--SLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN-------------------------- 261 (403)
T ss_pred EE-----ecCCCCC--chhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH--------------------------
Confidence 42 2222222 22321111223334555 8899999999996211
Q ss_pred hhHHHHHHHHHHHHHHhCCCCceEEEecccc--------------CCCCCC---CCCHHHHHHHHHHHHHhhcCCCCCCC
Q 048613 233 NLFDASLDALYSALEKAGAPDVEVVVSETGW--------------PSEGGD---AATVDNANTYYKNMINHVSAGTPKRP 295 (336)
Q Consensus 233 n~~d~~~da~~~a~~~~g~~~~~v~I~ETGW--------------Ps~G~~---~as~~na~~y~~~~~~~~~~gtp~~~ 295 (336)
|+ ...++. +.. --+|.|+|.||+. |+.+.. ..++..|.+|.+++++.+. .+|..
T Consensus 262 nL-~~nl~d----ia~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~- 332 (403)
T COG3867 262 NL-TTNLND----IAS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKS- 332 (403)
T ss_pred HH-HhHHHH----HHH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCC-
Confidence 11 111111 211 1378999999998 766644 5778999999999999883 13322
Q ss_pred CCceeEEEEE
Q 048613 296 GKVIETYLFA 305 (336)
Q Consensus 296 ~~~~~~~~Fe 305 (336)
++..+||.|
T Consensus 333 -~GlGvFYWE 341 (403)
T COG3867 333 -NGLGVFYWE 341 (403)
T ss_pred -CceEEEEec
Confidence 357777766
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.35 E-value=0.00016 Score=75.78 Aligned_cols=234 Identities=15% Similarity=0.148 Sum_probs=131.4
Q ss_pred HHHHHhCCCCEEEEcc--CChhHHHHHhcCCcEEEEecCCC---------------cccCCC----C---HHHHHHHHHH
Q 048613 44 VNLYHSNGITKMRIYD--PNEPTLQALRGSNIELMLGIPNG---------------DLQALS----N---PSVASSWVQN 99 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gi~v~lGv~~~---------------~~~~~a----~---~~~a~~w~~~ 99 (336)
++++|..|++.||+-. .++..+.+|.+.||-|+.=++.- +.+... + .....+-+++
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5578899999999932 35789999999999888544221 001111 0 1122222444
Q ss_pred hhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccccccccccc
Q 048613 100 NILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYI 179 (336)
Q Consensus 100 ~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l 179 (336)
-|..+...-.|..=++|||.-.. .+.....++.+.+.+++.. .+=+|+.+..+. . +|. ...+
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~---~~~~~~~~~~l~~~~k~~D--ptR~vt~~~~~~---~--~~~--------~~~~ 460 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASR---EQGAREYFAPLAELTRKLD--PTRPVTCVNVMF---A--TPD--------TDTV 460 (604)
T ss_pred HHHhccCCceEEEEeeccCCCcc---chhHHHHHHHHHHHHHhhC--CCCceEEEeccc---C--Ccc--------cccc
Confidence 45555433467788999996432 1223344555556665554 234677654211 0 110 0112
Q ss_pred chHHHHhhhcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEe
Q 048613 180 GPIVQFLKQTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVS 259 (336)
Q Consensus 180 ~~~ldfl~~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ 259 (336)
.+++ |+++.|.|+=|-. ++... + . ....++..+... .++ . +||++++
T Consensus 461 ~~~~-------Dv~~~N~Y~~wy~--~~~~~--~--~--------------~~~~~~~~~~~~---~~~--~-~kP~~is 507 (604)
T PRK10150 461 SDLV-------DVLCLNRYYGWYV--DSGDL--E--T--------------AEKVLEKELLAW---QEK--L-HKPIIIT 507 (604)
T ss_pred cCcc-------cEEEEcccceecC--CCCCH--H--H--------------HHHHHHHHHHHH---HHh--c-CCCEEEE
Confidence 2334 4478998753321 10000 0 0 011122222111 111 2 8999999
Q ss_pred ccccCCCC------CCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCC--CCCCceeeeCCCCCcc
Q 048613 260 ETGWPSEG------GDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPA--ETERHFGLFSPNKQPK 331 (336)
Q Consensus 260 ETGWPs~G------~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~--~~E~~wGlf~~d~~~K 331 (336)
|.|+.+.- +..-|.+.|..|++...+.+.+ +|. -+.-|+..+||-....+. .-..+.||++.||+||
T Consensus 508 Eyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k 582 (604)
T PRK10150 508 EYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPK 582 (604)
T ss_pred ccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCCh
Confidence 99976532 1145789999999988777743 343 577888899995544321 1235889999999999
Q ss_pred cc
Q 048613 332 YK 333 (336)
Q Consensus 332 ~~ 333 (336)
-.
T Consensus 583 ~~ 584 (604)
T PRK10150 583 SA 584 (604)
T ss_pred HH
Confidence 64
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.05 E-value=0.00067 Score=62.92 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=78.8
Q ss_pred eeeEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC-------------C-------hhHHHHHhcCCcEEEEecCCCc--
Q 048613 26 IGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDP-------------N-------EPTLQALRGSNIELMLGIPNGD-- 83 (336)
Q Consensus 26 ~Gi~Y~~~~~~~ps~~~v~~~l~~~~~~~VRlY~~-------------d-------~~vl~A~~~~gi~v~lGv~~~~-- 83 (336)
.|+|-. ..+.. ..++.++.+++.|++.||+.-. + ..+|+++++.||+|+|.+....
T Consensus 11 ~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w 88 (281)
T PF00150_consen 11 RGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGW 88 (281)
T ss_dssp EEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTC
T ss_pred eeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 466655 21111 6688889999999999999721 1 1588888999999999888741
Q ss_pred ---ccCCCCHHHHHHHHHH----hhhhcCCCceEEEEEeccccCCC-Cc------chhhHHHHHHHHHHHHHhcCCC
Q 048613 84 ---LQALSNPSVASSWVQN----NILAFTPDVKFRYVAVGNEISPS-DE------AASFVLPAMQNIYNAIASANLQ 146 (336)
Q Consensus 84 ---~~~~a~~~~a~~w~~~----~i~~~~~~~~I~~I~VGNE~l~~-~~------s~~~L~~~i~~vr~~L~~~gl~ 146 (336)
...........+|+++ -...|.....|.++-+.||+... .. .+..+.+.++.+.+++++.+-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 89 ANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp SSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 1111222333333333 22344234568899999999876 32 3578899999999999999864
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.88 E-value=0.001 Score=62.16 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHhCCCCceEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCcee
Q 048613 244 SALEKAGAPDVEVVVSETGWPSEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFG 322 (336)
Q Consensus 244 ~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wG 322 (336)
..|++++..++||+|||.+-|..+ +.+.|+.++++++..+.+ . |. ...+++..+.|. .|.++ .+-|
T Consensus 173 ~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~-~---p~-v~gi~~Wg~~d~~~W~~~----~~~~ 239 (254)
T smart00633 173 AALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLA-H---PA-VTGVTVWGVTDKYSWLDG----GAPL 239 (254)
T ss_pred HHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHc-C---CC-eeEEEEeCCccCCcccCC----CCce
Confidence 344554445899999999999753 448889999999888843 1 22 345666666664 35532 4779
Q ss_pred eeCCCCCccccC
Q 048613 323 LFSPNKQPKYKL 334 (336)
Q Consensus 323 lf~~d~~~K~~l 334 (336)
||+.|++||-.+
T Consensus 240 L~d~~~~~kpa~ 251 (254)
T smart00633 240 LFDANYQPKPAY 251 (254)
T ss_pred eECCCCCCChhh
Confidence 999999999764
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.41 E-value=0.0098 Score=55.19 Aligned_cols=164 Identities=12% Similarity=0.158 Sum_probs=94.6
Q ss_pred ceEEEEEeccccCCC---CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHH
Q 048613 108 VKFRYVAVGNEISPS---DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQ 184 (336)
Q Consensus 108 ~~I~~I~VGNE~l~~---~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ld 184 (336)
..++.|..=||.=.. +.++++.+...++..+.|+.. .++++.+-.-.. ...+|+...| |.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~~--~~~~~~g~~W-------l~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GVKLGSPAVAFT--NGGTPGGLDW-------LSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----CcEEECCeeccc--CCCCCCccHH-------HHHHHH
Confidence 567788888997553 567888888888888887753 356665432100 0001111111 111111
Q ss_pred Hhh--hcCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccc
Q 048613 185 FLK--QTGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETG 262 (336)
Q Consensus 185 fl~--~~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETG 262 (336)
-+. ...|++.+|.| .. +. .-|...++.+ .++. +|||+|||.|
T Consensus 131 ~~~~~~~~D~iavH~Y---~~--~~-------------------------~~~~~~i~~~---~~~~---~kPIWITEf~ 174 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GG--DA-------------------------DDFKDYIDDL---HNRY---GKPIWITEFG 174 (239)
T ss_pred hcccCCCccEEEEecC---Cc--CH-------------------------HHHHHHHHHH---HHHh---CCCEEEEeec
Confidence 111 12344555555 10 00 0122233332 2333 3999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCceeeeCCCCCc
Q 048613 263 WPSEGGDAATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLFSPNKQP 330 (336)
Q Consensus 263 WPs~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~~E~~wGlf~~d~~~ 330 (336)
+.. +....+.++++.|++..+.++++ ++. --+|+||...+ .+ ..+...-.|++.+|++
T Consensus 175 ~~~-~~~~~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~~~-~~---~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 175 CWN-GGSQGSDEQQASFLRQALPWLDS----QPY-VERYAWFGFMN-DG---SGVNPNSALLDADGSL 232 (239)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHHHhc----CCC-eeEEEeccccc-cc---CCCccccccccCCCCc
Confidence 876 33478999999999999999953 222 56789998333 22 2456677788878765
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.23 E-value=0.015 Score=55.33 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=64.4
Q ss_pred CeeeEecCCCCCC---CCHHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCcEEEEecCCCc---ccC------C
Q 048613 25 PIGVCYGRVANNL---PSDQEV---VNLYHSNGITKMRIYD--PNEPTLQALRGSNIELMLGIPNGD---LQA------L 87 (336)
Q Consensus 25 ~~Gi~Y~~~~~~~---ps~~~v---~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gi~v~lGv~~~~---~~~------~ 87 (336)
..|+|+....... +++++. ++++|+.|++.||+.. .++..+.+|.+.||-|+.-++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 3489988653221 345444 4567889999999964 357899999999999998776511 010 0
Q ss_pred C-CH---HHHHHHHHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhcCCCCceEEEee
Q 048613 88 S-NP---SVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASANLQAQTKVSTA 154 (336)
Q Consensus 88 a-~~---~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~ 154 (336)
. ++ +.+.+-+++.|..+...-.|..=++|||. .....++.+.+.+++.-= .=||+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~Dp--tRpv~~~ 157 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDP--TRPVTYA 157 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-T--TSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCC--CCceeec
Confidence 1 12 22333455556555433457788899997 222334444444444432 2267654
No 11
>PRK09936 hypothetical protein; Provisional
Probab=94.79 E-value=3.4 Score=39.52 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=43.1
Q ss_pred CeeeEecCCCCCC-CCH---HHHHHHHHhCCCCEEEEc-----cCC--------hhHHHHHhcCCcEEEEecCCCc
Q 048613 25 PIGVCYGRVANNL-PSD---QEVVNLYHSNGITKMRIY-----DPN--------EPTLQALRGSNIELMLGIPNGD 83 (336)
Q Consensus 25 ~~Gi~Y~~~~~~~-ps~---~~v~~~l~~~~~~~VRlY-----~~d--------~~vl~A~~~~gi~v~lGv~~~~ 83 (336)
..|+=|-|..+|. -++ ++..+.++..|++.+=+- +.| .+.++++.+.||+|.+|++.+.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 4678899997773 455 455566677888776553 223 2688888999999999999864
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.31 E-value=3.9 Score=45.87 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred eeeEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCcEEEEecCCCc--------ccCCC-
Q 048613 26 IGVCYGRVANN---LPSDQEV---VNLYHSNGITKMRIYD--PNEPTLQALRGSNIELMLGIPNGD--------LQALS- 88 (336)
Q Consensus 26 ~Gi~Y~~~~~~---~ps~~~v---~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gi~v~lGv~~~~--------~~~~a- 88 (336)
.|+|+-..... ..+++++ ++++|+.|++.||+-. .++..+++|.+.||=|+--+.... .....
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 37776433111 1345444 5577899999999853 236789999999999887553221 01122
Q ss_pred CH---HHHHHHHHHhhhhcCCCceEEEEEeccccCCC
Q 048613 89 NP---SVASSWVQNNILAFTPDVKFRYVAVGNEISPS 122 (336)
Q Consensus 89 ~~---~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~ 122 (336)
++ .+..+-+++.|..+...-.|..=++|||.-.+
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g 453 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG 453 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 22 11122244445554433567788899997543
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=91.20 E-value=0.082 Score=53.66 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=134.2
Q ss_pred HHHHHHHHhCCCCEEEEc--------c-----CCh-------hHHHHHhcCCcEEEEecCCCcccCC-------CCHHHH
Q 048613 41 QEVVNLYHSNGITKMRIY--------D-----PNE-------PTLQALRGSNIELMLGIPNGDLQAL-------SNPSVA 93 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--------~-----~d~-------~vl~A~~~~gi~v~lGv~~~~~~~~-------a~~~~a 93 (336)
++.++++++.|++..|+= + .|+ +++..+.+.||+.++.+..-+++.. .+.+.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 677889999999998874 1 121 6899999999999999987655431 122222
Q ss_pred ---HHHHHHhhhhcCCCceEEEEEeccccCCC-----------Cc--c-------hhhHHHHHHHHHHHHHhcCCCCceE
Q 048613 94 ---SSWVQNNILAFTPDVKFRYVAVGNEISPS-----------DE--A-------ASFVLPAMQNIYNAIASANLQAQTK 150 (336)
Q Consensus 94 ---~~w~~~~i~~~~~~~~I~~I~VGNE~l~~-----------~~--s-------~~~L~~~i~~vr~~L~~~gl~~~i~ 150 (336)
.+..+.-+..| .+.|+.-+.=||...- +. + ...++-+-..+.+++++.+- +.+
T Consensus 141 ~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DGK 216 (455)
T ss_dssp HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TSE
T ss_pred HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ceE
Confidence 12222223344 2678888888996431 00 1 23344444555566666653 456
Q ss_pred EEeeeeccccc-c-ccCCC---------------------Ccccccccccc---------cc-hHHHHhhhcCCceeeec
Q 048613 151 VSTAIQTSLLG-N-SYPPS---------------------AGSFADNANSY---------IG-PIVQFLKQTGAPLLANI 197 (336)
Q Consensus 151 VtT~~~~~~~~-~-~~pPS---------------------~~~f~~~~~~~---------l~-~~ldfl~~~~~~~~vNi 197 (336)
|+.+....... . ..++. .|.|..+.... +. +-...|....|++++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 77665544221 0 00000 01111100000 11 11233467899999999
Q ss_pred cCCccccCCC-Cccccccc---cccc---CCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccccCCCCCC-
Q 048613 198 YPYFSYIGDT-KDIRLDYA---LFTS---QGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWPSEGGD- 269 (336)
Q Consensus 198 yPff~~~~~p-~~~~~~~a---~f~~---~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~- 269 (336)
|.=---...+ ......+. .+.. .....++.+ +.-.=..+.+.+...-++ ++++||+|+|.|++.....
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~g--w~i~P~Gl~~~L~~l~~~--Y~~~pI~ITENG~~~~~~~~ 372 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWG--WEIYPEGLRDVLRYLKDR--YGNPPIYITENGIGDPDEVD 372 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTS--TBBETHHHHHHHHHHHHH--HTSSEEEEEEE---EETTCT
T ss_pred ccceeeccCccccccccccCCccccccccccccccccC--cccccchHhhhhhhhccc--cCCCcEEEeccccccccccc
Confidence 8543332222 11111110 0100 000111222 111111233333322233 4679999999999887642
Q ss_pred ------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCC-CCCCCCCCCceeeeCCC------CCcccc
Q 048613 270 ------AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDEN-QKGPAETERHFGLFSPN------KQPKYK 333 (336)
Q Consensus 270 ------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~-wK~~~~~E~~wGlf~~d------~~~K~~ 333 (336)
..-...-+.+++.+.+.+..|.+ -..||+.++.|-- |. .+..+.|||++.| |+||-+
T Consensus 373 ~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~-----V~GY~~WSl~Dn~Ew~--~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 373 DGKVDDDYRIDYLQDHLNQVLKAIEDGVN-----VRGYFAWSLLDNFEWA--EGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp TSHBSHHHHHHHHHHHHHHHHHHHHTT-E-----EEEEEEETSB---BGG--GGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccCcCcHHHHHHHHHHHHHHHhhhccCCC-----eeeEeeeccccccccc--cCccCccCceEEcCCCCcCeeeccH
Confidence 11123335555555555555532 3457777788742 33 3688999999999 888854
No 14
>TIGR03356 BGL beta-galactosidase.
Probab=85.69 E-value=2.5 Score=42.64 Aligned_cols=78 Identities=19% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCEEEEcc------------CC-------hhHHHHHhcCCcEEEEecCCCcccC-------CCCHHHH-
Q 048613 41 QEVVNLYHSNGITKMRIYD------------PN-------EPTLQALRGSNIELMLGIPNGDLQA-------LSNPSVA- 93 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~------------~d-------~~vl~A~~~~gi~v~lGv~~~~~~~-------~a~~~~a- 93 (336)
++.+++++..|++.+|+=- .| .+++..+.+.||++++.+..-+++. ..+++..
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 6778889999999998721 12 1688999999999999996554332 2233211
Q ss_pred --HHHHHHhhhhcCCCceEEEEEeccccC
Q 048613 94 --SSWVQNNILAFTPDVKFRYVAVGNEIS 120 (336)
Q Consensus 94 --~~w~~~~i~~~~~~~~I~~I~VGNE~l 120 (336)
.+..+.-...| + +.|+..+.=||..
T Consensus 137 ~f~~ya~~~~~~~-~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAVVAERL-G-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHh-C-CcCCEEEEecCcc
Confidence 22222223344 3 4677766667764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=84.04 E-value=7.1 Score=38.39 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCEEEEccC-------C---------hhHHHHHhcCCcEEEEecCCCccc--------C----------
Q 048613 41 QEVVNLYHSNGITKMRIYDP-------N---------EPTLQALRGSNIELMLGIPNGDLQ--------A---------- 86 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~-------d---------~~vl~A~~~~gi~v~lGv~~~~~~--------~---------- 86 (336)
++.+++++..|++.||+-.. . ..+|..+++.||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 66677888899999997432 1 258888899999999999743110 0
Q ss_pred ----------CCC---HHHHHHHHHHhhhhcCCCceEEEEEeccccCC
Q 048613 87 ----------LSN---PSVASSWVQNNILAFTPDVKFRYVAVGNEISP 121 (336)
Q Consensus 87 ----------~a~---~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~ 121 (336)
+.+ ...+.+.++.-...|.....|.++.|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 011 12344445444455654467999999999766
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=79.11 E-value=6.8 Score=40.05 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCEEEE-------c--c---CCh-------hHHHHHhcCCcEEEEecCCCccc
Q 048613 41 QEVVNLYHSNGITKMRI-------Y--D---PNE-------PTLQALRGSNIELMLGIPNGDLQ 85 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRl-------Y--~---~d~-------~vl~A~~~~gi~v~lGv~~~~~~ 85 (336)
+|.+++++..|++.-|+ + + .|+ +++..+.+.||+-++.+..-+++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 77788999988877765 2 1 122 69999999999999999976654
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=78.22 E-value=12 Score=36.80 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=56.8
Q ss_pred CCCEEEEcc-CChhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEeccccCCC--Ccchh
Q 048613 51 GITKMRIYD-PNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPS--DEAAS 127 (336)
Q Consensus 51 ~~~~VRlY~-~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~--~~s~~ 127 (336)
.++.|-+|+ .|++++..+.+.|++|++..-.. .+.+.++..-.++++.. ..+.....+.+|.+==|-... ....+
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~si-v~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQK-VELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHH-HHHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 467888886 47899999999999999864322 22334444333444332 222212234455554454332 12256
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 048613 128 FVLPAMQNIYNAIASANL 145 (336)
Q Consensus 128 ~L~~~i~~vr~~L~~~gl 145 (336)
.+..-|+++|++|++.|.
T Consensus 133 ~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 133 ALTELVKETTKAFKKENP 150 (358)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 788999999999998764
No 18
>PLN02998 beta-glucosidase
Probab=77.88 E-value=6.5 Score=40.55 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=45.0
Q ss_pred CCCceEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeeC
Q 048613 251 APDVEVVVSETGWPSEGGD----AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFS 325 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~ 325 (336)
+++.||+|+|-|+....+. .-=...-+.+++.+.+.+..|.+ -..||.-++.|- +|.. +..+.|||++
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~-----V~GY~~WSl~DnfEW~~--Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSD-----VKGYFQWSLMDVFELFG--GYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchhc--cccCccceEE
Confidence 3445899999999875321 11123345555555555555543 245777777773 3543 5899999999
Q ss_pred CCCC
Q 048613 326 PNKQ 329 (336)
Q Consensus 326 ~d~~ 329 (336)
.|.+
T Consensus 463 VD~~ 466 (497)
T PLN02998 463 VDFK 466 (497)
T ss_pred ECCC
Confidence 8754
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=75.22 E-value=28 Score=34.20 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCC
Q 048613 125 AASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPY 200 (336)
Q Consensus 125 s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPf 200 (336)
....+..+++.+++.|++.. .+.+|+|..... +... + +... +.+..|+++.|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~-~~~~---------------~-d~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS-WFNG---------------I-DYFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT----S---------------S--HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc-ccCc---------------C-CHHH-HHhhCCcceeccccC
Confidence 46778889999999999986 357898753211 0000 0 1122 356678899999998
No 20
>PLN02814 beta-glucosidase
Probab=74.87 E-value=8.6 Score=39.76 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=44.7
Q ss_pred CCCceEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeeC
Q 048613 251 APDVEVVVSETGWPSEGGD----AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFS 325 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~ 325 (336)
+++.||+|+|-|++...+. .-=...-+.+++.+.+.+..|.+ -..||.-++.|- +|.. +.++.|||++
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~-----V~GY~~WSllDnfEW~~--Gy~~RfGLvy 457 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSD-----TRGYFVWSMIDLYELLG--GYTTSFGMYY 457 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchhc--cccCccceEE
Confidence 4455899999999755322 11123334455555555555543 245777778773 3543 5899999999
Q ss_pred CCCC
Q 048613 326 PNKQ 329 (336)
Q Consensus 326 ~d~~ 329 (336)
.|+.
T Consensus 458 VD~~ 461 (504)
T PLN02814 458 VNFS 461 (504)
T ss_pred ECCC
Confidence 8755
No 21
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=73.52 E-value=11 Score=38.61 Aligned_cols=253 Identities=15% Similarity=0.151 Sum_probs=134.9
Q ss_pred CeeeEecCCCCC---CCCH--HHHHHHHH---hCCCCEEEEccCC--------------h------hHHHHHhcCCcEEE
Q 048613 25 PIGVCYGRVANN---LPSD--QEVVNLYH---SNGITKMRIYDPN--------------E------PTLQALRGSNIELM 76 (336)
Q Consensus 25 ~~Gi~Y~~~~~~---~ps~--~~v~~~l~---~~~~~~VRlY~~d--------------~------~vl~A~~~~gi~v~ 76 (336)
++|+||=|.-.+ +|-- +++...|. -.|++.+|++-.| + -.+.-|...++||+
T Consensus 5 ~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvl 84 (587)
T COG3934 5 ALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVL 84 (587)
T ss_pred EeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEE
Confidence 357777666333 2221 34444554 3578999999322 1 12333346788877
Q ss_pred EecCCC---------cccCC--------C-CH---HHHHHHHHHhhhhcCCCceEEEEEeccccCCC-CcchhhHHHHHH
Q 048613 77 LGIPNG---------DLQAL--------S-NP---SVASSWVQNNILAFTPDVKFRYVAVGNEISPS-DEAASFVLPAMQ 134 (336)
Q Consensus 77 lGv~~~---------~~~~~--------a-~~---~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~-~~s~~~L~~~i~ 134 (336)
+-.=+. .+++. . ++ ..-+..+..-|.+|.-...|.+-..-||.|.+ +.+++.++...+
T Consensus 85 itlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~ 164 (587)
T COG3934 85 ITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSG 164 (587)
T ss_pred EEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHH
Confidence 654332 11111 1 11 12245666667777555667788889998887 889999999999
Q ss_pred HHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCccccCCCCcccccc
Q 048613 135 NIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYIGDTKDIRLDY 214 (336)
Q Consensus 135 ~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~p~~~~~~~ 214 (336)
.+.+-++..+=+- -|+.-|...-|...-||+ .+..+|| -+-|+||+|+. +| +
T Consensus 165 emy~yiK~ldd~h--lvsvGD~~sp~~~~~pyN-----------~r~~vDy-------a~~hLY~hyd~--sl------~ 216 (587)
T COG3934 165 EMYAYIKWLDDGH--LVSVGDPASPWPQYAPYN-----------ARFYVDY-------AANHLYRHYDT--SL------V 216 (587)
T ss_pred HHHHHhhccCCCC--eeecCCcCCcccccCCcc-----------cceeecc-------ccchhhhhccC--Ch------h
Confidence 9999999887422 244333333233322332 2233444 57899998874 22 1
Q ss_pred cccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 048613 215 ALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWPSEGGDAATVDNANTYYKNMINHVSAGTPKR 294 (336)
Q Consensus 215 a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~~gtp~~ 294 (336)
+... ..| +...++ .-+. .+-+||+.=|-|-|++-. .+|...|+-.....+..|
T Consensus 217 ~r~s----------~~y---g~~~l~----i~~~--~g~~pV~leefGfsta~g----~e~s~ayfiw~~lal~~g---- 269 (587)
T COG3934 217 SRVS----------TVY---GKPYLD----IPTI--MGWQPVNLEEFGFSTAFG----QENSPAYFIWIRLALDTG---- 269 (587)
T ss_pred heee----------eee---cchhhc----cchh--cccceeeccccCCccccc----ccccchhhhhhhhHHhhc----
Confidence 1100 001 100111 0011 123799999999999743 333333333222222211
Q ss_pred CCCceeEEEEEeecCCCCC-C---CCCCCceeeeCCCCCcccc
Q 048613 295 PGKVIETYLFAMFDENQKG-P---AETERHFGLFSPNKQPKYK 333 (336)
Q Consensus 295 ~~~~~~~~~FeafDe~wK~-~---~~~E~~wGlf~~d~~~K~~ 333 (336)
+.+--+.-|+-|-+--.+ + ...|-.|||.+.|+.+|++
T Consensus 270 -gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~ 311 (587)
T COG3934 270 -GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKID 311 (587)
T ss_pred -CCceEEEEecCCccCCCCCCCccccccceeeeecCCCchhhh
Confidence 112222223322210000 0 2467889999999999975
No 22
>PLN02849 beta-glucosidase
Probab=70.76 E-value=13 Score=38.52 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=44.6
Q ss_pred CCCceEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceee
Q 048613 251 APDVEVVVSETGWPSEGGD------AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGL 323 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGl 323 (336)
+++.||+|+|-|++..... .-=...-+.+++.+.+.+..|.+ -..||.-++.|- .|. .+.++.|||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~-----V~GY~~WSl~DnfEW~--~Gy~~RfGL 455 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSD-----TRGYFVWSFMDLYELL--KGYEFSFGL 455 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchh--ccccCccce
Confidence 3445899999999865421 11123344555555555555543 245777777774 243 358999999
Q ss_pred eCCCCC
Q 048613 324 FSPNKQ 329 (336)
Q Consensus 324 f~~d~~ 329 (336)
++.|+.
T Consensus 456 i~VD~~ 461 (503)
T PLN02849 456 YSVNFS 461 (503)
T ss_pred EEECCC
Confidence 998754
No 23
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=60.13 E-value=12 Score=36.52 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=36.7
Q ss_pred hHHHHHhcCCcEEEEecCCCcccC-CCCHHHHHHHHHHhhh---hcC--CCceEEEEEeccccCCC----CcchhhHHHH
Q 048613 63 PTLQALRGSNIELMLGIPNGDLQA-LSNPSVASSWVQNNIL---AFT--PDVKFRYVAVGNEISPS----DEAASFVLPA 132 (336)
Q Consensus 63 ~vl~A~~~~gi~v~lGv~~~~~~~-~a~~~~a~~w~~~~i~---~~~--~~~~I~~I~VGNE~l~~----~~s~~~L~~~ 132 (336)
.+-+-+.++|++|+.|+..-.-.. ..+...-..|--+|-. .|- ..-+|.+-=.|||.--. ..++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 455566789999999998421100 0011223456655533 331 23468788899995432 3468999999
Q ss_pred HHHHHHHHHhc
Q 048613 133 MQNIYNAIASA 143 (336)
Q Consensus 133 i~~vr~~L~~~ 143 (336)
...+|+.|+..
T Consensus 193 ~~~Lr~il~~i 203 (319)
T PF03662_consen 193 FIQLRKILNEI 203 (319)
T ss_dssp H---HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=60.00 E-value=21 Score=36.58 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=44.0
Q ss_pred ceEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceee
Q 048613 254 VEVVVSETGWPSEGGD--------AATVDNANTYYKNMINHVS-AGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGL 323 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGl 323 (336)
+||+|+|-|....... .-=...-+.+++.+.+.+. .|.+ -..||.-++.|- .|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~-----v~GY~~WSl~Dn~EW~~-G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVE-----LLGYTTWGCIDLVSAGT-GEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchHhhcccC-CCccCeece
Confidence 5899999999854421 1113344556666666653 5543 234777777774 2443 238899999
Q ss_pred eCCCCC
Q 048613 324 FSPNKQ 329 (336)
Q Consensus 324 f~~d~~ 329 (336)
++.|+.
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 999754
No 25
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=58.38 E-value=34 Score=31.57 Aligned_cols=80 Identities=14% Similarity=0.249 Sum_probs=44.5
Q ss_pred hHHHHHhcCCcEEEEecCCCcccC---CC-CHHHHHHHHHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHH
Q 048613 63 PTLQALRGSNIELMLGIPNGDLQA---LS-NPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYN 138 (336)
Q Consensus 63 ~vl~A~~~~gi~v~lGv~~~~~~~---~a-~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~ 138 (336)
..++++++.|+||++.|....... +. ++....++++ ++..+.....+.+|-+==|-.... .+.+..-|+++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHH
Confidence 456677778999999887543221 22 4433333332 333222112344444444533211 3567888999999
Q ss_pred HHHhcCC
Q 048613 139 AIASANL 145 (336)
Q Consensus 139 ~L~~~gl 145 (336)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9988765
No 26
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=58.18 E-value=1.9e+02 Score=29.86 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=52.4
Q ss_pred cCCcEEEEecCCCc--------cc---CCC----CH--HHHHHHHHHhhhhcC-CCceEEEEEeccccCCC---------
Q 048613 70 GSNIELMLGIPNGD--------LQ---ALS----NP--SVASSWVQNNILAFT-PDVKFRYVAVGNEISPS--------- 122 (336)
Q Consensus 70 ~~gi~v~lGv~~~~--------~~---~~a----~~--~~a~~w~~~~i~~~~-~~~~I~~I~VGNE~l~~--------- 122 (336)
+.++||+...|-.. .. .+. ++ .+-.+.+.+-|+.|. .+..|-+|++.||+...
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45699999999431 11 111 11 223455566677773 34789999999999841
Q ss_pred -CcchhhHHHHHHH-HHHHHHhcCCCCceEEEe
Q 048613 123 -DEAASFVLPAMQN-IYNAIASANLQAQTKVST 153 (336)
Q Consensus 123 -~~s~~~L~~~i~~-vr~~L~~~gl~~~i~VtT 153 (336)
..+++++..-|++ ++-+|++.|++.++++-.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 2368899999986 999999999855678744
No 27
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=57.93 E-value=30 Score=35.48 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=44.3
Q ss_pred CceEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhh-cCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCcee
Q 048613 253 DVEVVVSETGWPSEGGD--------AATVDNANTYYKNMINHV-SAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFG 322 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~-~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wG 322 (336)
++||+|+|-|....... .-=...-+.+++.+.+.+ ..|.+ -..||.-++.|- .|.. +...+.||
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~-----V~GY~~WSl~Dn~Ew~~-G~y~~RfG 440 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVD-----LMGYTPWGCIDLVSAGT-GEMKKRYG 440 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCC-----eEEEeeccccccccccC-Ccccccee
Confidence 36899999999854321 111233455566665655 55543 245777788884 3443 22789999
Q ss_pred eeCCCCC
Q 048613 323 LFSPNKQ 329 (336)
Q Consensus 323 lf~~d~~ 329 (336)
|++.|+.
T Consensus 441 lv~VD~~ 447 (476)
T PRK09589 441 FIYVDKD 447 (476)
T ss_pred eEEEcCC
Confidence 9998764
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=57.55 E-value=76 Score=35.88 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=57.0
Q ss_pred eeeEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCcEEEEecCCCcc-----cCCC-CHH
Q 048613 26 IGVCYGRVANN---LPSDQEV---VNLYHSNGITKMRIYD--PNEPTLQALRGSNIELMLGIPNGDL-----QALS-NPS 91 (336)
Q Consensus 26 ~Gi~Y~~~~~~---~ps~~~v---~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gi~v~lGv~~~~~-----~~~a-~~~ 91 (336)
.|+|+-..... ..+++++ ++++|+.|++.||+-. -++..++.|.+.||=|+--++...- ..+. ++.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 37776533111 2355554 4567889999999943 2468999999999998877654210 1112 221
Q ss_pred ---HHHHHHHHhhhhcCCCceEEEEEeccccCC
Q 048613 92 ---VASSWVQNNILAFTPDVKFRYVAVGNEISP 121 (336)
Q Consensus 92 ---~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~ 121 (336)
+..+-+++.|......-.|..=++|||.-.
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 122223334444433356888899999643
No 29
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=57.22 E-value=27 Score=30.71 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=44.2
Q ss_pred HHHHHhc--CCcEEEEecCCCcccC---CC-CHHHHHHHHHHhhhhcCCCceEEEEEeccccCCCCc--chhhHHHHHHH
Q 048613 64 TLQALRG--SNIELMLGIPNGDLQA---LS-NPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDE--AASFVLPAMQN 135 (336)
Q Consensus 64 vl~A~~~--~gi~v~lGv~~~~~~~---~a-~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~--s~~~L~~~i~~ 135 (336)
-++.+++ .|+||++.+....... +. ++....+.+ +++..+.....+++|-+==|...... ....++..|++
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 3445554 4999999888643222 23 443333322 22332222223445544334433211 35789999999
Q ss_pred HHHHHHhcCC
Q 048613 136 IYNAIASANL 145 (336)
Q Consensus 136 vr~~L~~~gl 145 (336)
+|+.+.+.++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999977654
No 30
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=56.62 E-value=37 Score=35.18 Aligned_cols=76 Identities=14% Similarity=0.354 Sum_probs=50.9
Q ss_pred CCCceEEEeccccCCCCCC----------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecCC-CCCCCCCC
Q 048613 251 APDVEVVVSETGWPSEGGD----------AATVDNANTYYKNMINHVS-AGTPKRPGKVIETYLFAMFDEN-QKGPAETE 318 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe~-wK~~~~~E 318 (336)
+.|.+|.|+|-|-+..... ..=.+..+.|++.+.+.+. .|. +-..||+.++-|.. |.. +..
T Consensus 405 Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv-----nv~GYf~WSLmDnfEw~~--Gy~ 477 (524)
T KOG0626|consen 405 YGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV-----NVKGYFVWSLLDNFEWLD--GYK 477 (524)
T ss_pred cCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC-----ceeeEEEeEcccchhhhc--Ccc
Confidence 6799999999999887543 2333455666666666653 221 23468888888743 553 577
Q ss_pred CceeeeCC------CCCcccc
Q 048613 319 RHFGLFSP------NKQPKYK 333 (336)
Q Consensus 319 ~~wGlf~~------d~~~K~~ 333 (336)
..||||+. .|.||-+
T Consensus 478 ~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 478 VRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred cccccEEEeCCCCCcCCchhH
Confidence 99999995 5666643
No 31
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=55.54 E-value=2.3e+02 Score=28.41 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=51.2
Q ss_pred hHHHHHhcCCcEEEEecCCCcccC----------------CC--CHHHHHHHHHHhhhhcC-CCceEEEEEeccccCCC-
Q 048613 63 PTLQALRGSNIELMLGIPNGDLQA----------------LS--NPSVASSWVQNNILAFT-PDVKFRYVAVGNEISPS- 122 (336)
Q Consensus 63 ~vl~A~~~~gi~v~lGv~~~~~~~----------------~a--~~~~a~~w~~~~i~~~~-~~~~I~~I~VGNE~l~~- 122 (336)
..|+++++.|++.+++.-|+..-. +. ...+-...|.+.++.|. -+..|+.|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 688999999999999887763111 11 11222333444333331 23789999999998764
Q ss_pred -C-------cchhhHHHHHHHHHHHHHhcCCCCceEEEeeeec
Q 048613 123 -D-------EAASFVLPAMQNIYNAIASANLQAQTKVSTAIQT 157 (336)
Q Consensus 123 -~-------~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~ 157 (336)
+ .++++....|+.++..|++.||... |...|+.
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea~ 228 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEAG 228 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEES
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecchh
Confidence 1 2588999999999999999999654 5555543
No 32
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=54.71 E-value=38 Score=34.64 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=41.7
Q ss_pred ceEEEeccccCCCCCC-------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeeC
Q 048613 254 VEVVVSETGWPSEGGD-------AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFS 325 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~-------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~ 325 (336)
+||+|+|-|....... .-=...-+.+++.+.+.+..|-+ -..||.-++.|- .|. .+..+.|||++
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~-----v~GY~~WSl~Dn~Ew~--~Gy~~RfGLv~ 440 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGAN-----VKGYFIWSLMDVFSWS--NGYEKRYGLFY 440 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchh--ccccCccceEE
Confidence 4799999999864321 11123334555555555555533 234666677763 244 35899999999
Q ss_pred CCCC
Q 048613 326 PNKQ 329 (336)
Q Consensus 326 ~d~~ 329 (336)
.|++
T Consensus 441 VD~~ 444 (467)
T TIGR01233 441 VDFD 444 (467)
T ss_pred ECCC
Confidence 8754
No 33
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=53.71 E-value=16 Score=31.99 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecC
Q 048613 43 VVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIP 80 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~ 80 (336)
-.++|+..|++++|+.+.+|.-+.++.+.|++|.=-++
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36789999999999999999999999999999875443
No 34
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=53.28 E-value=39 Score=25.98 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=32.8
Q ss_pred cCCCceEEEEEeccc-cCCC---------CcchhhHHHHHHHHHHHHHhcCCCCceEEEee
Q 048613 104 FTPDVKFRYVAVGNE-ISPS---------DEAASFVLPAMQNIYNAIASANLQAQTKVSTA 154 (336)
Q Consensus 104 ~~~~~~I~~I~VGNE-~l~~---------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~ 154 (336)
|..+..|.+-=|+|| .... +...+.+.+.++++-+.+++.+= ..|||+.
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 434578999999999 5511 11367889999999999998863 6788765
No 35
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.24 E-value=1.2e+02 Score=30.88 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCc
Q 048613 122 SDEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYF 201 (336)
Q Consensus 122 ~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff 201 (336)
|.++.++.+..|+.+|+.+. ++-++|..-- .|| .+-.....+.+||+ +..-+=.+|+++|=
T Consensus 275 R~yt~e~~~~~i~k~R~~~P------d~~i~tDiIV-----GFP-------gETeedFe~tl~lv-~e~~fd~~~~F~YS 335 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARP------DIAISTDIIV-----GFP-------GETEEDFEETLDLV-EEVRFDRLHVFKYS 335 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCC------CceEeccEEE-----ECC-------CCCHHHHHHHHHHH-HHhCCCEEeeeecC
Confidence 36788999999999999874 4455553321 233 11223444566765 44556688999885
Q ss_pred cc
Q 048613 202 SY 203 (336)
Q Consensus 202 ~~ 203 (336)
..
T Consensus 336 pR 337 (437)
T COG0621 336 PR 337 (437)
T ss_pred CC
Confidence 54
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=52.05 E-value=46 Score=34.14 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=42.9
Q ss_pred CceEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceee
Q 048613 253 DVEVVVSETGWPSEGGD--------AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGL 323 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGl 323 (336)
++||+|+|-|....... .-=...-+.+++.+.+.++.|.+ -..||.-++.|- .|.. +...+.|||
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~-----V~GY~~WSl~Dn~Ew~~-G~y~~RfGL 438 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIP-----LMGYTTWGCIDLVSAST-GEMSKRYGF 438 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCC-----EEEEEeecccccccccC-CCccceeee
Confidence 35899999999854321 11122334555555555555543 245777777774 2432 237899999
Q ss_pred eCCCCC
Q 048613 324 FSPNKQ 329 (336)
Q Consensus 324 f~~d~~ 329 (336)
++.|.+
T Consensus 439 v~VD~~ 444 (474)
T PRK09852 439 VYVDRD 444 (474)
T ss_pred EEECCC
Confidence 998754
No 37
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.71 E-value=1.9e+02 Score=27.72 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=42.3
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCC--CCcc--cccccccccchHHHHhhhcCCceeeeccCC
Q 048613 125 AASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPP--SAGS--FADNANSYIGPIVQFLKQTGAPLLANIYPY 200 (336)
Q Consensus 125 s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pP--S~~~--f~~~~~~~l~~~ldfl~~~~~~~~vNiyPf 200 (336)
+.+++...++++|+. +||+..-.--.-|.....+ .-|. |.++.-|....+++-|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 467788888777765 4666553211112110000 0111 222223667789999999999999999999
Q ss_pred ccc
Q 048613 201 FSY 203 (336)
Q Consensus 201 f~~ 203 (336)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 873
No 38
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=51.69 E-value=1.6e+02 Score=27.96 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=48.6
Q ss_pred hhHHHHHhcCCcEEEEecCCCcc--------cCCC-CHHHHHHHHHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHH
Q 048613 62 EPTLQALRGSNIELMLGIPNGDL--------QALS-NPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPA 132 (336)
Q Consensus 62 ~~vl~A~~~~gi~v~lGv~~~~~--------~~~a-~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~ 132 (336)
+.++.++++.++||++.|.+... ..+. ++..-.+. .+++..+.....+.+|.+==|.+.. .....+..-
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKKYGYDGVNIDFENVPP-EDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHH
Confidence 57888888889999998876421 1122 33322222 2333333221234566655565432 234568899
Q ss_pred HHHHHHHHHhcCC
Q 048613 133 MQNIYNAIASANL 145 (336)
Q Consensus 133 i~~vr~~L~~~gl 145 (336)
|+++|.+|++.|+
T Consensus 126 l~~lr~~l~~~~~ 138 (313)
T cd02874 126 LRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHhhhcCc
Confidence 9999999987775
No 39
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=50.66 E-value=2.6e+02 Score=28.53 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=83.9
Q ss_pred EEEeccccCCC----CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhh
Q 048613 112 YVAVGNEISPS----DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLK 187 (336)
Q Consensus 112 ~I~VGNE~l~~----~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~ 187 (336)
..=|=||.=.. ..+..+-...-+...++||+.. ..++|+-+-. .+. . ...+...++|+.
T Consensus 158 ~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~--~~~---------~----~~~~~~~l~~~~ 220 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAF--AWA---------Y----DEWCEDFLEFCK 220 (486)
T ss_dssp EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEE--ETT--------------THHHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCccc--ccc---------H----HHHHHHHHHHHh
Confidence 34578985332 2356678888888888898875 4688886510 000 0 123445566665
Q ss_pred h---cCCceeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccccC
Q 048613 188 Q---TGAPLLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWP 264 (336)
Q Consensus 188 ~---~~~~~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGWP 264 (336)
+ .-|++..|.||.-......... . ..+ .....+++...+ +...+...+.+++++.++| |.
T Consensus 221 ~~~~~~DfiS~H~y~~~~~~~~~~~~---~-------~~~----~~~~~~~~~~~~-~~~~~~~e~~p~~~~~~tE--~n 283 (486)
T PF01229_consen 221 GNNCPLDFISFHSYGTDSAEDINENM---Y-------ERI----EDSRRLFPELKE-TRPIINDEADPNLPLYITE--WN 283 (486)
T ss_dssp HCT---SEEEEEEE-BESESE-SS-E---E-------EEB------HHHHHHHHHH-HHHHHHTSSSTT--EEEEE--EE
T ss_pred cCCCCCCEEEEEecccccccccchhH---H-------hhh----hhHHHHHHHHHH-HHHHHhhccCCCCceeecc--cc
Confidence 4 3466788888863321100000 0 000 001112221111 2223344567889999999 88
Q ss_pred CCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEE----eecCCCCCCCCCCCceeeeCCCCCccc
Q 048613 265 SEGGD----AATVDNANTYYKNMINHVSAGTPKRPGKVIETYLFA----MFDENQKGPAETERHFGLFSPNKQPKY 332 (336)
Q Consensus 265 s~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~Fe----afDe~wK~~~~~E~~wGlf~~d~~~K~ 332 (336)
+.-.. .-|.-++.-..++++...+. .++.|-+= .|.|.-.+...+-..|||++.+|-+|-
T Consensus 284 ~~~~~~~~~~dt~~~aA~i~k~lL~~~~~--------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 284 ASISPRNPQHDTCFKAAYIAKNLLSNDGA--------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp S-SSTT-GGGGSHHHHHHHHH-HHHHGGG--------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred cccCCCcchhccccchhhHHHHHHHhhhh--------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCch
Confidence 76554 45556666666666665531 13332221 233322222246677999999987763
No 40
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=48.69 E-value=18 Score=35.03 Aligned_cols=213 Identities=15% Similarity=0.203 Sum_probs=109.1
Q ss_pred hHHHHHhcCCcEEE--EecCCCcccC----C-C-C-------HHHHHHHHHHhhhhcCCC-ceEEEEEeccccCCC-C--
Q 048613 63 PTLQALRGSNIELM--LGIPNGDLQA----L-S-N-------PSVASSWVQNNILAFTPD-VKFRYVAVGNEISPS-D-- 123 (336)
Q Consensus 63 ~vl~A~~~~gi~v~--lGv~~~~~~~----~-a-~-------~~~a~~w~~~~i~~~~~~-~~I~~I~VGNE~l~~-~-- 123 (336)
.+++-+++.||+|- .=||....+. . . + .....++|++.+..| .+ .+|...=|=||++.. .
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 57777788888865 3356553321 1 1 1 123345555545555 43 488898899999986 3
Q ss_pred -----cc------hhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCc
Q 048613 124 -----EA------ASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAP 192 (336)
Q Consensus 124 -----~s------~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~ 192 (336)
.. ++.+..+.+..|++.. +++.-.-| .+++. + .-...+..+++.|...+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P------~a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADP------NAKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHT------TSEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCC------CcEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCCc
Confidence 01 3455667777777763 23332222 11111 0 0123455667666554332
Q ss_pred ---eeeeccCCccccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccccCCCCCC
Q 048613 193 ---LLANIYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWPSEGGD 269 (336)
Q Consensus 193 ---~~vNiyPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~ 269 (336)
+++-.| |.. + +. .+.+...++++..-+.+|.|||.-=.+....
T Consensus 204 IdgIG~Q~H--~~~------------------------~--~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 204 IDGIGLQSH--FDA------------------------G--YP------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp S-EEEEEEE--EET------------------------T--SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred cceechhhc--cCC------------------------C--CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 222222 110 0 01 2334445666655679999999865544332
Q ss_pred --CCCHHHHHHHHHHHHHhhcCCCCCCC-CCceeEEEEEeecCC-CCCCCCCCCceeeeCCCCCcccc
Q 048613 270 --AATVDNANTYYKNMINHVSAGTPKRP-GKVIETYLFAMFDEN-QKGPAETERHFGLFSPNKQPKYK 333 (336)
Q Consensus 270 --~as~~na~~y~~~~~~~~~~gtp~~~-~~~~~~~~FeafDe~-wK~~~~~E~~wGlf~~d~~~K~~ 333 (336)
....+.|+.++++++..+.+ .| ..-..+.+..+.|.. |..... -.+=+||+.|.+||-.
T Consensus 250 ~~~~~~~~qA~~~~~~~~~~~~----~~~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 250 PDAEEEEAQAEYYRDFLTACFS----HPPAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH----TTHCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred cchHHHHHHHHHHHHHHHHHHh----CCccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 24467788899999988742 11 112334444555543 554200 1234799999999964
No 41
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=48.27 E-value=74 Score=22.75 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCC-----hhHHHHHhcCCcEEEEecCC
Q 048613 38 PSDQEVVNLYHSNGITKMRIYDPN-----EPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 38 ps~~~v~~~l~~~~~~~VRlY~~d-----~~vl~A~~~~gi~v~lGv~~ 81 (336)
-+++++++..+++|++.|=+=+-+ ....+.+++.|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 467899999999998887665544 34556667789999999864
No 42
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=47.45 E-value=30 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=30.8
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEec
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGI 79 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv 79 (336)
.|+|+..|++++|+.+.++.=+.++.+.||+|.=-+
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIVERV 166 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 679999999999999998877888999999987333
No 43
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=47.04 E-value=30 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=31.5
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIP 80 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~ 80 (336)
+|+|+..|++++|+.+.++.-+.++.+.|++|.=-++
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERVP 170 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999988778899999999974343
No 44
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.84 E-value=57 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=24.4
Q ss_pred HhCCCCceEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhc
Q 048613 248 KAGAPDVEVVVSETGWPSEGGD------AATVDNANTYYKNMINHVS 288 (336)
Q Consensus 248 ~~g~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~ 288 (336)
.+++++.+|.. .|||.|.. ..+...+...+.++++.+.
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35566655554 59999976 3455555666677776663
No 45
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=46.55 E-value=1.8e+02 Score=28.91 Aligned_cols=137 Identities=9% Similarity=0.142 Sum_probs=71.0
Q ss_pred CCHHHHHHHH---HhCCCCEEEEcc-------CC-------hhHHHHHhcC-CcE-EEEecCCCcccCCCCHHHHHHHHH
Q 048613 38 PSDQEVVNLY---HSNGITKMRIYD-------PN-------EPTLQALRGS-NIE-LMLGIPNGDLQALSNPSVASSWVQ 98 (336)
Q Consensus 38 ps~~~v~~~l---~~~~~~~VRlY~-------~d-------~~vl~A~~~~-gi~-v~lGv~~~~~~~~a~~~~a~~w~~ 98 (336)
-++++|++.+ ...|++.|.+.+ .| .++++++.+. |++ +-++-- ....+ +++ ..+.++
T Consensus 167 r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~--~p~~~-~~e-ll~~m~ 242 (414)
T TIGR01579 167 VPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSI--DPEDI-DEE-LLEAIA 242 (414)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCC--ChhhC-CHH-HHHHHH
Confidence 3667776644 446899998753 22 1466666543 442 333311 11112 222 223333
Q ss_pred HhhhhcCCCceEEEEEeccccCCC--------CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcc
Q 048613 99 NNILAFTPDVKFRYVAVGNEISPS--------DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 99 ~~i~~~~~~~~I~~I~VGNE~l~~--------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~ 170 (336)
++ + .....+.+|=|-... ..+.++...+++.+|+.. .| +.+++..-. .+|
T Consensus 243 ~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P----- 300 (414)
T TIGR01579 243 SE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP----- 300 (414)
T ss_pred hc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-----
Confidence 21 0 112356666554331 456788888888888743 22 456554322 222
Q ss_pred cccccccccchHHHHhhhcCCceeeeccCCccc
Q 048613 171 FADNANSYIGPIVQFLKQTGAPLLANIYPYFSY 203 (336)
Q Consensus 171 f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~ 203 (336)
.+-...+...++|+.+.. +-.+++|||--.
T Consensus 301 --gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 --GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred --CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 122356777889876543 556777777543
No 46
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.13 E-value=69 Score=31.81 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=29.1
Q ss_pred HHhCCCCceEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhc
Q 048613 247 EKAGAPDVEVVVSETGWPSEGGD------AATVDNANTYYKNMINHVS 288 (336)
Q Consensus 247 ~~~g~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~ 288 (336)
...|.+..+|+.+ |||.|.- ..|-..++.-+.++++.+.
T Consensus 141 ~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 141 HDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred hhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 3356677788876 9999975 5777777777888887774
No 47
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=44.32 E-value=36 Score=34.97 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=43.4
Q ss_pred CceEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecC-CCCCCCCCCCcee
Q 048613 253 DVEVVVSETGWPSEGGD--------AATVDNANTYYKNMINHVS-AGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFG 322 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wG 322 (336)
++||+|+|-|....... .-=...-+.+++.+.+.+. .|-+ -..||.-++.|- .|.. ++..+.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~-----v~GY~~WSl~DnfEw~~-G~y~~RfG 441 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVD-----LMGYTPWGCIDCVSFTT-GQYSKRYG 441 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhcccC-CCccCccc
Confidence 46899999999864321 1112334555555555553 5543 245777777774 3543 23889999
Q ss_pred eeCCCCC
Q 048613 323 LFSPNKQ 329 (336)
Q Consensus 323 lf~~d~~ 329 (336)
|++.|++
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9988543
No 48
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=42.75 E-value=1.4e+02 Score=28.83 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHHHhc
Q 048613 125 AASFVLPAMQNIYNAIASA 143 (336)
Q Consensus 125 s~~~L~~~i~~vr~~L~~~ 143 (336)
....++..|+++|++|++.
T Consensus 132 d~~~~~~ll~~lr~~l~~~ 150 (362)
T cd02872 132 DKENFVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999988
No 49
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=41.60 E-value=2.8e+02 Score=29.46 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHHHH----HHHhCCCCEEEEccCC---h---hHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCce
Q 048613 40 DQEVVN----LYHSNGITKMRIYDPN---E---PTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVK 109 (336)
Q Consensus 40 ~~~v~~----~l~~~~~~~VRlY~~d---~---~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~ 109 (336)
+++|++ ....+|++.+|+|++- . ..++++++.|..+...+-....+.. ..+...++++. +... +.+.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~-t~e~~~~~ak~-l~~~-Gad~ 170 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVH-TLDNFLELGKK-LAEM-GCDS 170 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCC-CHHHHHHHHHH-HHHc-CCCE
Confidence 455554 3456899999999853 1 3566777899887776554433322 33433343433 3332 2222
Q ss_pred EEEEEeccccCCCCcchhhHHHHHHHHHHHH
Q 048613 110 FRYVAVGNEISPSDEAASFVLPAMQNIYNAI 140 (336)
Q Consensus 110 I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L 140 (336)
|++..- .+-.+|.++-..++.+|+.+
T Consensus 171 ---I~IkDt--aG~l~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 171 ---IAIKDM--AGLLTPTVTVELYAGLKQAT 196 (596)
T ss_pred ---EEeCCc--ccCCCHHHHHHHHHHHHhhc
Confidence 222211 11235777777777777664
No 50
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.49 E-value=2.9e+02 Score=27.69 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=44.5
Q ss_pred EEEEEeccccCCC--------CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccch
Q 048613 110 FRYVAVGNEISPS--------DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGP 181 (336)
Q Consensus 110 I~~I~VGNE~l~~--------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
...+.+|=|-... ..+.++....++.+|+.+ ..+.|++..-. .+| .+-...+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDIIV-----GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC-------CCCHHHHHH
Confidence 4577777665432 456788888888888863 13567664322 232 222356777
Q ss_pred HHHHhhhcCCceeeeccCCcc
Q 048613 182 IVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 182 ~ldfl~~~~~~~~vNiyPff~ 202 (336)
.++|+.+.. +-.+|+++|--
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp 331 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSP 331 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccC
Confidence 888876544 44566666644
No 51
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.13 E-value=3.7e+02 Score=27.31 Aligned_cols=136 Identities=14% Similarity=0.237 Sum_probs=71.2
Q ss_pred CHHHHHHH---HHhCCCCEEEEccCC-----------hhHHHHHhcC-Cc-EEEEecCCCcccCCCCHHHHHHHHHHhhh
Q 048613 39 SDQEVVNL---YHSNGITKMRIYDPN-----------EPTLQALRGS-NI-ELMLGIPNGDLQALSNPSVASSWVQNNIL 102 (336)
Q Consensus 39 s~~~v~~~---l~~~~~~~VRlY~~d-----------~~vl~A~~~~-gi-~v~lGv~~~~~~~~a~~~~a~~w~~~~i~ 102 (336)
++++|++. |...|++.|.+.+-| .+.|..+.+. ++ .+-++..+. ..+. . ...+.+++.
T Consensus 184 ~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~~-~-ell~~m~~~-- 257 (449)
T PRK14332 184 DPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDFP-D-HLLSLMAKN-- 257 (449)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccCC-H-HHHHHHHhC--
Confidence 56777653 345689999888644 1344544332 22 232322211 1222 2 222233321
Q ss_pred hcCCCceEEEEEeccc-----cCCC---CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccc
Q 048613 103 AFTPDVKFRYVAVGNE-----ISPS---DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADN 174 (336)
Q Consensus 103 ~~~~~~~I~~I~VGNE-----~l~~---~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~ 174 (336)
+ .....+.+|=| +|-. ..+.++...+++.+|++. ..+.++|..-. .+| .+
T Consensus 258 ---~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~------p~i~i~td~Iv-----GfP-------gE 315 (449)
T PRK14332 258 ---P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIV------PDVGITTDIIV-----GFP-------NE 315 (449)
T ss_pred ---C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEe-----eCC-------CC
Confidence 1 13457777744 3322 567889999999999874 23556553221 232 12
Q ss_pred cccccchHHHHhhhcCCceeeeccCCccc
Q 048613 175 ANSYIGPIVQFLKQTGAPLLANIYPYFSY 203 (336)
Q Consensus 175 ~~~~l~~~ldfl~~~~~~~~vNiyPff~~ 203 (336)
-...+...++|+.+. .+-.+++|+|--.
T Consensus 316 T~edf~~tl~~v~~l-~~~~~~~f~ys~~ 343 (449)
T PRK14332 316 TEEEFEDTLAVVREV-QFDMAFMFKYSER 343 (449)
T ss_pred CHHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 235566778887543 3445777776553
No 52
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.42 E-value=35 Score=33.92 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=30.0
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEec
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGI 79 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv 79 (336)
.++|+..|+++|||. .+|.=+.++.+.||+|.==+
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEe
Confidence 679999999999999 78887888899999987333
No 53
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.72 E-value=1.7e+02 Score=29.71 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=69.4
Q ss_pred CHHHHHHH---HHhCCCCEEEEccCC--------------hhHHHHHhc-CCc-EEEEecCCCcccCCCCHHHHHHHHHH
Q 048613 39 SDQEVVNL---YHSNGITKMRIYDPN--------------EPTLQALRG-SNI-ELMLGIPNGDLQALSNPSVASSWVQN 99 (336)
Q Consensus 39 s~~~v~~~---l~~~~~~~VRlY~~d--------------~~vl~A~~~-~gi-~v~lGv~~~~~~~~a~~~~a~~w~~~ 99 (336)
+.++|++. |...|++.|.+.+.+ .++++++.+ .|+ .+-++.-+ ...+. .+ ..+.+++
T Consensus 185 ~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~--p~~i~-~e-ll~~l~~ 260 (459)
T PRK14338 185 PLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSH--PAWMT-DR-LIHAVAR 260 (459)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecC--hhhcC-HH-HHHHHhc
Confidence 56777653 334688999887632 146666665 354 34332211 11222 22 2122322
Q ss_pred hhhhcCCCceEEEEEecccc----CC---C-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccc
Q 048613 100 NILAFTPDVKFRYVAVGNEI----SP---S-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~i~~~~~~~~I~~I~VGNE~----l~---~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f 171 (336)
. + ..+..+.+|=|. +. + ..+.++.+..++.+|+.. ..+.+++..-.+ +|
T Consensus 261 ----~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~------pgi~i~~d~IvG-----~P------ 317 (459)
T PRK14338 261 ----L-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI------PDVSLTTDIIVG-----HP------ 317 (459)
T ss_pred ----c-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEEE-----CC------
Confidence 1 1 124455554333 22 1 457888888888888763 135565543222 22
Q ss_pred ccccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 172 ADNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 172 ~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
.+-...+...++|+.+.. +-.+++++|--
T Consensus 318 -gET~ed~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 318 -GETEEQFQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred -CCCHHHHHHHHHHHHHcC-CCEeEEEecCC
Confidence 112356677888876543 44567777643
No 54
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.07 E-value=2.3e+02 Score=29.36 Aligned_cols=135 Identities=10% Similarity=0.160 Sum_probs=70.8
Q ss_pred CHHHHHHH---HHhCCCCEEEEccCC---------------hhHHHHHhcCCcE-EEEecCCCcccCCCCHHHHHHHHHH
Q 048613 39 SDQEVVNL---YHSNGITKMRIYDPN---------------EPTLQALRGSNIE-LMLGIPNGDLQALSNPSVASSWVQN 99 (336)
Q Consensus 39 s~~~v~~~---l~~~~~~~VRlY~~d---------------~~vl~A~~~~gi~-v~lGv~~~~~~~~a~~~~a~~w~~~ 99 (336)
++++|++. |...|++.|.+.+-| .++++.+.+.++. +-++... ...+. .+ ....+++
T Consensus 242 ~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~-de-li~~m~~ 317 (509)
T PRK14327 242 RPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFD-DH-LIEVLAK 317 (509)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCC-HH-HHHHHHh
Confidence 56777653 445688888886532 1456666655542 2222211 11232 22 2222322
Q ss_pred hhhhcCCCceEEEEEeccccCC--------CCcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccc
Q 048613 100 NILAFTPDVKFRYVAVGNEISP--------SDEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~i~~~~~~~~I~~I~VGNE~l~--------~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f 171 (336)
. + -.+..+.+|=|-.. +..+.++.+..++.+|+.+ ..+.++|..-. .||
T Consensus 318 ----~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------p~i~i~tdiIv-----GfP------ 374 (509)
T PRK14327 318 ----G-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI------PNVALTTDIIV-----GFP------ 374 (509)
T ss_pred ----c-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCcEEeeeEEE-----eCC------
Confidence 1 1 23456777655432 1457888999999988874 23566654322 232
Q ss_pred ccccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 172 ADNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 172 ~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
.+-...+..-++|+.+. .+-.+++|+|--
T Consensus 375 -gET~edf~~Tl~~v~~l-~~d~~~~f~ysp 403 (509)
T PRK14327 375 -NETDEQFEETLSLYREV-GFDHAYTFIYSP 403 (509)
T ss_pred -CCCHHHHHHHHHHHHHc-CCCeEEEeeeeC
Confidence 12234566778887543 334566666544
No 55
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.80 E-value=40 Score=33.44 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=30.9
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIP 80 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~ 80 (336)
.++|+..|+++||+.. +|.-+.++.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 6799999999999998 88888889999999874443
No 56
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=37.71 E-value=75 Score=30.49 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred ceEEEEEeccccC--CC--Cc-----chhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCc----ccccc
Q 048613 108 VKFRYVAVGNEIS--PS--DE-----AASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAG----SFADN 174 (336)
Q Consensus 108 ~~I~~I~VGNE~l--~~--~~-----s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~----~f~~~ 174 (336)
..|...++|+|.. .+ +. .++.|...+.+||..| | ...+||-+-.|+.+.. +.|.-| .|+
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 5789999999953 22 21 2678999999999998 3 3578999988887754 344433 222
Q ss_pred cccccchHHHHhhhcCCceeeeccCCccc
Q 048613 175 ANSYIGPIVQFLKQTGAPLLANIYPYFSY 203 (336)
Q Consensus 175 ~~~~l~~~ldfl~~~~~~~~vNiyPff~~ 203 (336)
|.++. -...-|+++|+.|.=.+-
T Consensus 90 ----LDpLW--a~~~IDfIGID~Y~PLSD 112 (299)
T PF13547_consen 90 ----LDPLW--ADPNIDFIGIDNYFPLSD 112 (299)
T ss_pred ----Ccccc--cCCcCCEEEeecccccCC
Confidence 22222 113445689988855443
No 57
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.36 E-value=3.6e+02 Score=25.42 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCC-------hhHHHHHh---cCCcEEEEecCCCcccCCC----CHHHHHHHHHHhh
Q 048613 36 NLPSDQEVVNLYHSNGITKMRIYDPN-------EPTLQALR---GSNIELMLGIPNGDLQALS----NPSVASSWVQNNI 101 (336)
Q Consensus 36 ~~ps~~~v~~~l~~~~~~~VRlY~~d-------~~vl~A~~---~~gi~v~lGv~~~~~~~~a----~~~~a~~w~~~~i 101 (336)
..+++.+.++.|+..|++.|-+.++. ..+...+. ..--++.+|-|.=...... +..++.+.+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 35899999999999999999999876 24444433 3335899998863211111 2233333343332
Q ss_pred hhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccch
Q 048613 102 LAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGP 181 (336)
Q Consensus 102 ~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
..-.++.-+..+-=||+- ... ..-..++..|++.|+. ++-|+|.+ .+| .+.+
T Consensus 136 ~~~~~~~a~vlmGHGt~h-----~an---~~Y~~l~~~l~~~~~~-~v~vgtvE-------G~P------------~~~~ 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH-----PAN---AAYSALQAMLKKHGYP-NVFVGTVE-------GYP------------SLED 187 (262)
T ss_dssp -TT-TTEEEEEEE---SC-----HHH---HHHHHHHHHHHCCT-T-TEEEEETT-------SSS------------BHHH
T ss_pred cccCCCCEEEEEeCCCCC-----Ccc---HHHHHHHHHHHhCCCC-eEEEEEeC-------CCC------------CHHH
Confidence 211133444444455542 122 2345567788888763 68899975 332 2455
Q ss_pred HHHHhhhcCCceeeeccCCccc
Q 048613 182 IVQFLKQTGAPLLANIYPYFSY 203 (336)
Q Consensus 182 ~ldfl~~~~~~~~vNiyPff~~ 203 (336)
++..|...+ +=-|.+.||.--
T Consensus 188 vi~~L~~~g-~k~V~L~PlMlV 208 (262)
T PF06180_consen 188 VIARLKKKG-IKKVHLIPLMLV 208 (262)
T ss_dssp HHHHHHHHT--SEEEEEEESSS
T ss_pred HHHHHHhcC-CCeEEEEecccc
Confidence 666665433 446999999874
No 58
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=36.40 E-value=2.2e+02 Score=24.81 Aligned_cols=100 Identities=10% Similarity=0.002 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCCEEEEc----------cCC--------------hhHHHHHhcCCcEEEEecCCCcccCCC-CHHH---
Q 048613 41 QEVVNLYHSNGITKMRIY----------DPN--------------EPTLQALRGSNIELMLGIPNGDLQALS-NPSV--- 92 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY----------~~d--------------~~vl~A~~~~gi~v~lGv~~~~~~~~a-~~~~--- 92 (336)
++..+.++..||+.|=+- .++ ..+|++|.+.||||++|++.+..-.-. +...
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~ 102 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAE 102 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHH
Confidence 455667778888776322 111 258889999999999999976311101 1111
Q ss_pred -HHHHHHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhc
Q 048613 93 -ASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASA 143 (336)
Q Consensus 93 -a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~ 143 (336)
....+..-...|.....+.+--+-.|.=... ....+..+.+.+.|++.
T Consensus 103 ~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 103 RNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 1121222122343223566766667754331 22355556666666554
No 59
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=36.28 E-value=55 Score=29.24 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=31.2
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIP 80 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~ 80 (336)
.|+|+..|++.+|+.+.++.-+.++.+.|++|.=-++
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6789999999999999887678888999999884443
No 60
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=35.59 E-value=2e+02 Score=28.72 Aligned_cols=131 Identities=17% Similarity=0.307 Sum_probs=71.5
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccc--cccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 125 AASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFA--DNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 125 s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~--~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
+.+++.+.++..|+. .||+..-..-..|...+ +.|. .+.-+.+..+++.|++.+=-++++++|+..
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEE
T ss_pred CHHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccC
Confidence 466777777777665 47777644222232211 1222 222267889999999999999999999887
Q ss_pred ccCCCCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhC----CCCceEEEeccccCCCCCC-CCCHHHHH
Q 048613 203 YIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAG----APDVEVVVSETGWPSEGGD-AATVDNAN 277 (336)
Q Consensus 203 ~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g----~~~~~v~I~ETGWPs~G~~-~as~~na~ 277 (336)
.... . | ..++.. .+ .+ .++....+++. ||-.+.- .-+-.+++
T Consensus 109 ~~~~------~-----------------~-~~~~~~-------~~-~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~ 155 (441)
T PF01055_consen 109 NDSP------D-----------------Y-ENYDEA-------KE-KGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEAR 155 (441)
T ss_dssp TTTT------B-------------------HHHHHH-------HH-TT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHH
T ss_pred CCCC------c-----------------c-hhhhhH-------hh-cCceeecccCCcccccc-cCCcccccCCCChhHH
Confidence 4221 0 1 122221 11 11 12225566676 8844322 45556688
Q ss_pred HHHHHHHHhhcCCCCCCCCCceeEEEEEe
Q 048613 278 TYYKNMINHVSAGTPKRPGKVIETYLFAM 306 (336)
Q Consensus 278 ~y~~~~~~~~~~gtp~~~~~~~~~~~Fea 306 (336)
.++++.++.+.+ ..+++.+|..+
T Consensus 156 ~w~~~~~~~~~~------~~Gvdg~w~D~ 178 (441)
T PF01055_consen 156 DWWKEQLKELLD------DYGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHT------TST-SEEEEES
T ss_pred HHHHHHHHHHHh------ccCCceEEeec
Confidence 888777766632 12789998765
No 61
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=34.73 E-value=1.2e+02 Score=27.18 Aligned_cols=55 Identities=16% Similarity=0.361 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccc-hHHHHhhhcCCceeeecc
Q 048613 129 VLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIG-PIVQFLKQTGAPLLANIY 198 (336)
Q Consensus 129 L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~-~~ldfl~~~~~~~~vNiy 198 (336)
.-.+++.+.+.+...|+.+ |++.+.... +.| + .+.+. ++.+.+.+.+=|+.+|+-
T Consensus 83 ~~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~-------~-~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRG-VKLHPDLGG------FDP-------D-DPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHHTTTESE-EEEESSETT------CCT-------T-SGHCHHHHHHHHHHHT-EEEEEES
T ss_pred chhHHHHHHHhccccceee-eEecCCCCc------ccc-------c-cHHHHHHHHHHHHhhccceeeecc
Confidence 3467888888888888854 666553211 111 1 13344 788888888888777743
No 62
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.09 E-value=4.9e+02 Score=26.54 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHhCCCCEEEEccC-C-----hhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEec
Q 048613 43 VVNLYHSNGITKMRIYDP-N-----EPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVG 116 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~-d-----~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VG 116 (336)
.++.....|++.||+|++ + ..+++.+++.|+.+.+.+-..+.+ ..+.+...+..+.. ... +.+.| .+-
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~a~~l-~~~-Gad~I---~i~ 174 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSP-VHTIDYFVKLAKEM-QEM-GADSI---CIK 174 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCC-CCCHHHHHHHHHHH-HHc-CCCEE---EEc
Confidence 344445679999999975 2 246667778998876655543322 22333333333332 222 22322 221
Q ss_pred cccCCCCcchhhHHHHHHHHHHHH
Q 048613 117 NEISPSDEAASFVLPAMQNIYNAI 140 (336)
Q Consensus 117 NE~l~~~~s~~~L~~~i~~vr~~L 140 (336)
...+-..|.++...++.+|+.+
T Consensus 175 --Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 175 --DMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred --CCCCCCCHHHHHHHHHHHHHhc
Confidence 1112235777777777777765
No 63
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.64 E-value=3.8e+02 Score=27.58 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=27.1
Q ss_pred HHHHHhCCCCEEEEccC-C-h----hHHHHHhcCCcEEEEecCCC
Q 048613 44 VNLYHSNGITKMRIYDP-N-E----PTLQALRGSNIELMLGIPNG 82 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~-d-~----~vl~A~~~~gi~v~lGv~~~ 82 (336)
++....+|++.+|+|+. + . ..++++++.|..+.+.+-..
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt 155 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT 155 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 44456789999999985 3 1 45566778998866655543
No 64
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.41 E-value=2.2e+02 Score=28.51 Aligned_cols=61 Identities=7% Similarity=0.133 Sum_probs=37.3
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 123 DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 123 ~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
..+.+++...++.+|+.+ ..+.++|..-. .+| .+-...+...++|+.+. .+-.+|+++|--
T Consensus 255 ~~~~~~~~~~i~~lr~~~------pgi~i~~d~Iv-----GfP-------GET~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 255 GYTNQQYRELVERLKTAM------PDISLQTDLIV-----GFP-------SETEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred CCCHHHHHHHHHHHHhhC------CCCEEEEEEEE-----ECC-------CCCHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 457889999999998874 23566654322 232 12235667778887654 334567776654
No 65
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.16 E-value=2.8e+02 Score=27.97 Aligned_cols=134 Identities=13% Similarity=0.209 Sum_probs=69.2
Q ss_pred CHHHHHHHH---HhCCCCEEEE-------ccCC-------hhHHHHHhcCCcE-EEEecCCCcccCCCCHHHHHHHHHHh
Q 048613 39 SDQEVVNLY---HSNGITKMRI-------YDPN-------EPTLQALRGSNIE-LMLGIPNGDLQALSNPSVASSWVQNN 100 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRl-------Y~~d-------~~vl~A~~~~gi~-v~lGv~~~~~~~~a~~~~a~~w~~~~ 100 (336)
+.++|++.+ ...|++.|.+ |+.+ .++++.+.+.|+. +-++..+ ...+ +.+. .+.+++
T Consensus 168 ~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~--p~~i-~~el-l~~l~~- 242 (440)
T PRK14334 168 HPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSH--PMNF-TDDV-IAAMAE- 242 (440)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCC--cccC-CHHH-HHHHHh-
Confidence 567776544 3467777776 3322 2566666655652 3333221 1122 2222 222332
Q ss_pred hhhcCCCceEEEEEeccccCC--------CCcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccc
Q 048613 101 ILAFTPDVKFRYVAVGNEISP--------SDEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFA 172 (336)
Q Consensus 101 i~~~~~~~~I~~I~VGNE~l~--------~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~ 172 (336)
. + ..+..+.+|=|-.. +..+.++.+..++.+|++. . .+.+++..-.+ +|
T Consensus 243 ---~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P------- 299 (440)
T PRK14334 243 ---T-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP------- 299 (440)
T ss_pred ---c-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC-------
Confidence 1 1 12456666655432 1456788888888888763 2 34555543222 22
Q ss_pred cccccccchHHHHhhhcCCceeeeccCCc
Q 048613 173 DNANSYIGPIVQFLKQTGAPLLANIYPYF 201 (336)
Q Consensus 173 ~~~~~~l~~~ldfl~~~~~~~~vNiyPff 201 (336)
.+-...+...++|+.+. .+-.+++|+|-
T Consensus 300 gEt~ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 300 GETEEDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CCCHHHHHHHHHHHHhc-CCCEeeeeEee
Confidence 11135566778887554 34567777653
No 66
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.26 E-value=64 Score=32.33 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=33.1
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~ 81 (336)
.++|+..|+++||+.+.++.-+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67999999999999999998888999999999855554
No 67
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.06 E-value=62 Score=31.84 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCEEEEccCC-hhHHHHHhcCCcEEE
Q 048613 43 VVNLYHSNGITKMRIYDPN-EPTLQALRGSNIELM 76 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d-~~vl~A~~~~gi~v~ 76 (336)
-.++|+..|+++||+..-+ |.-+.++.+.|++|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3679999999999999998 877888899999986
No 68
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.93 E-value=2.1e+02 Score=28.85 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=42.5
Q ss_pred EEEEEecccc----CC---C-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccch
Q 048613 110 FRYVAVGNEI----SP---S-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGP 181 (336)
Q Consensus 110 I~~I~VGNE~----l~---~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
...+.+|=|- +. + ..+.++...+++.+|+.+ ..+.+++..-. .+| .+-...+..
T Consensus 257 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----G~P-------gET~ed~~~ 318 (439)
T PRK14328 257 CEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI------PDVAITTDIIV-----GFP-------GETEEDFEE 318 (439)
T ss_pred CceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC-------CCCHHHHHH
Confidence 4467777332 22 2 567888889888888863 13555553322 232 122355677
Q ss_pred HHHHhhhcCCceeeeccCCcc
Q 048613 182 IVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 182 ~ldfl~~~~~~~~vNiyPff~ 202 (336)
.++|+.+. .+-.+|+|+|--
T Consensus 319 tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 319 TLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred HHHHHHhc-CCCcccceEecC
Confidence 78887554 344567776644
No 69
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.74 E-value=87 Score=28.62 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=41.2
Q ss_pred EEEEccCC-----hhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEecccc
Q 048613 54 KMRIYDPN-----EPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEI 119 (336)
Q Consensus 54 ~VRlY~~d-----~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~ 119 (336)
.++++++- ..+.++..+.-+.++|..-.....++. ....|++ +|..+.+ +.+.-+.|||-.
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfe---ni~~W~~-~I~e~a~-~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFE---NIRNWIK-NIDEHAS-DDVVKILVGNKC 127 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHH---HHHHHHH-HHHhhCC-CCCcEEEeeccc
Confidence 34455543 367888877777888877665555553 3455764 5777765 578899999985
No 70
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.15 E-value=67 Score=32.01 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~ 81 (336)
.++|+..|+++||+.+.++.=+.++.+.|++|.=-++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67899999999999999987788899999999854543
No 71
>PRK03941 NTPase; Reviewed
Probab=30.53 E-value=3e+02 Score=24.37 Aligned_cols=54 Identities=20% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhcCCCCceEEEe
Q 048613 97 VQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASANLQAQTKVST 153 (336)
Q Consensus 97 ~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT 153 (336)
+++.+..++|...|.++.|-+.+=..+.+.+.+..+++..|.+++. + .+.-|+.
T Consensus 16 v~~af~~~~~~~~v~~v~v~SgV~~QP~geET~~GA~nRA~~A~~~-~--ad~gVGi 69 (174)
T PRK03941 16 VENVFGKIFDDVEVVGVEVDSGVPDQPFGEETVKGAINRAKNAYSP-D--FDFSVGI 69 (174)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhc-C--CCEEEEE
Confidence 4555555566666777777777655555678889999999999986 2 2445554
No 72
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=30.49 E-value=4.7e+02 Score=27.75 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCEEEEccCC---h---hHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEE
Q 048613 41 QEVVNLYHSNGITKMRIYDPN---E---PTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVA 114 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d---~---~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~ 114 (336)
...++....+|++.||+|++- . ..++++++.|..+...|-....+.. +.+...++++.. ... +.+.|.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~-~~~~~~~~a~~l-~~~-Gad~i~--- 173 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH-TLQTWVDLAKQL-EDM-GVDSLC--- 173 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc-CHHHHHHHHHHH-HHc-CCCEEE---
Confidence 334555567899999999752 1 4566777889886544432111111 223333334332 222 223222
Q ss_pred eccccCCCCcchhhHHHHHHHHHHHH
Q 048613 115 VGNEISPSDEAASFVLPAMQNIYNAI 140 (336)
Q Consensus 115 VGNE~l~~~~s~~~L~~~i~~vr~~L 140 (336)
+- ...+-..|.++-..++.+|+.+
T Consensus 174 i~--Dt~G~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 174 IK--DMAGLLKPYAAYELVSRIKKRV 197 (593)
T ss_pred EC--CCCCCcCHHHHHHHHHHHHHhc
Confidence 11 1111235777777777777765
No 73
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.36 E-value=71 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~ 81 (336)
.++|+..|+++||+.+.+|.=+.++.+.|++|.=-++.
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~ 376 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPL 376 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecc
Confidence 67899999999999999998888899999999844443
No 74
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=29.83 E-value=72 Score=33.46 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCCCc-ccCCCCHH--HHHHHHHHhhhhcCCCceEEEEEeccccC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGD-LQALSNPS--VASSWVQNNILAFTPDVKFRYVAVGNEIS 120 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~~~-~~~~a~~~--~a~~w~~~~i~~~~~~~~I~~I~VGNE~l 120 (336)
.++|+..|+++||+..-+|.=+.++.+.|++|.=-++..- .... |.. ..++---.|...- +......|..-.+
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~-n~~YL~tK~~k~gH~l~~-~~~~~~~~~~~~~-- 418 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDY-NAEYLATKAEKLGHLLLQ-TYLVTIAIAWDGE-- 418 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcc-hhHHHHHHHHhhCCccCC-CccccEEEEecCC--
Confidence 6799999999999999999889999999999985555421 1111 221 1111000111110 1111111221111
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCC
Q 048613 121 PSDEAASFVLPAMQNIYNAIASANL 145 (336)
Q Consensus 121 ~~~~s~~~L~~~i~~vr~~L~~~gl 145 (336)
..+..++-..+..+++..++.++
T Consensus 419 --~~~~~~~~~~~~~~~~~~~~~~~ 441 (555)
T PRK09319 419 --PYSVTERYELLEKLRHLARSHGL 441 (555)
T ss_pred --CCchHHHHHHHHHHHHHHHhcCc
Confidence 23467788888888888888876
No 75
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.79 E-value=72 Score=32.62 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCC
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~ 81 (336)
.++|+..|+++||+.+-++.=+.++.+.||+|.=-++.
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~ 410 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPL 410 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecc
Confidence 67999999999999998998888999999999844443
No 76
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=28.58 E-value=5.1e+02 Score=25.81 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=59.3
Q ss_pred HHHHHHHHhCCCCEEEEccC----------Ch------------hHHHHHhcCCcEEEEecCCCc------cc-----CC
Q 048613 41 QEVVNLYHSNGITKMRIYDP----------NE------------PTLQALRGSNIELMLGIPNGD------LQ-----AL 87 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~----------d~------------~vl~A~~~~gi~v~lGv~~~~------~~-----~~ 87 (336)
++....+++.|++.||+.-+ ++ ++++.+.+.||.|++-+-.-. .. .+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56667788999999999743 32 456677789999998744321 11 11
Q ss_pred CC-----HHHHHHHHHHhhhhcCCCceEEEEEeccccCC-C-CcchhhH-HHHHHHHHHHHHhc
Q 048613 88 SN-----PSVASSWVQNNILAFTPDVKFRYVAVGNEISP-S-DEAASFV-LPAMQNIYNAIASA 143 (336)
Q Consensus 88 a~-----~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~-~-~~s~~~L-~~~i~~vr~~L~~~ 143 (336)
.. +.....| +.-...|.....|.++-+=||+.. . +.....- -++...||+.+.+.
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 12 1122222 222234434577888888999984 1 2222233 47777777665444
No 77
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.36 E-value=1.4e+02 Score=25.15 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCEEEEccCC-----------------------hhHHHHHhcCCcEEEEecCCC
Q 048613 40 DQEVVNLYHSNGITKMRIYDPN-----------------------EPTLQALRGSNIELMLGIPNG 82 (336)
Q Consensus 40 ~~~v~~~l~~~~~~~VRlY~~d-----------------------~~vl~A~~~~gi~v~lGv~~~ 82 (336)
++++++.|+..+++.|-+|.-. .++++|+.+.||+|++-+...
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 5777888888888888886531 167888999999999877654
No 78
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=28.15 E-value=4.3e+02 Score=26.40 Aligned_cols=138 Identities=9% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCHHHHHHHHH---hCCCCEEEEccC----------C----hhHHHHHhcCC-cEEEEecCCCcccCCCCHHHHHHHHHH
Q 048613 38 PSDQEVVNLYH---SNGITKMRIYDP----------N----EPTLQALRGSN-IELMLGIPNGDLQALSNPSVASSWVQN 99 (336)
Q Consensus 38 ps~~~v~~~l~---~~~~~~VRlY~~----------d----~~vl~A~~~~g-i~v~lGv~~~~~~~~a~~~~a~~w~~~ 99 (336)
-++++|++.++ ..|++.|.+++- + .++++++.+.+ ++- +.+-.-....+ +.+ ..+.+++
T Consensus 164 r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~-~r~~~~~p~~~-~~e-ll~~~~~ 240 (430)
T TIGR01125 164 RPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYW-IRMHYLYPDEL-TDD-VIDLMAE 240 (430)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccE-EEEccCCcccC-CHH-HHHHHhh
Confidence 35677766443 357888886531 1 24677776654 431 11111011122 222 2222333
Q ss_pred hhhhcCCCceEEEEEeccccCC-------C-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccc
Q 048613 100 NILAFTPDVKFRYVAVGNEISP-------S-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~i~~~~~~~~I~~I~VGNE~l~-------~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f 171 (336)
. + .....+.+|=|-.. + ..+.++...+++.+|+.. . .+.|++..-. .+|
T Consensus 241 ~-----~-~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P------ 297 (430)
T TIGR01125 241 G-----P-KVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP------ 297 (430)
T ss_pred C-----C-cccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC------
Confidence 1 1 12345555545332 1 456788888888888763 1 3455554321 222
Q ss_pred ccccccccchHHHHhhhcCCceeeeccCCccc
Q 048613 172 ADNANSYIGPIVQFLKQTGAPLLANIYPYFSY 203 (336)
Q Consensus 172 ~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~ 203 (336)
.+-...+...++|+.+. .+-.+|+++|--.
T Consensus 298 -gET~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 298 -GETEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred -CCCHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 12235677889998654 4556788877554
No 79
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.78 E-value=4.6e+02 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=35.9
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 123 DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 123 ~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
..+.++.+.+++.+|+.+ ..+.++|.. + -.+| .+-...+...++|+.+.. +-.+|+|+|--
T Consensus 261 ~~t~~~~~~~v~~lr~~~------p~i~i~~d~----I-vGfP-------gETeedf~~Tl~fl~~l~-~~~~~~f~~sp 321 (420)
T PRK14339 261 GYTKEWFLNRAEKLRALV------PEVSISTDI----I-VGFP-------GESDKDFEDTMDVLEKVR-FEQIFSFKYSP 321 (420)
T ss_pred CCCHHHHHHHHHHHHHHC------CCCEEEEEE----E-EECC-------CCCHHHHHHHHHHHHhcC-CCEEeeEecCC
Confidence 457888888888888864 135666632 1 1232 122356677788875433 33467776433
No 80
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=27.05 E-value=1.3e+02 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCEEEEcc--CC---hhHHHHHhcCCcEEEE
Q 048613 41 QEVVNLYHSNGITKMRIYD--PN---EPTLQALRGSNIELML 77 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~--~d---~~vl~A~~~~gi~v~l 77 (336)
+++.+.++.+|++.|+++- .. ..+|+++...|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4556677788999999983 33 4799999999998654
No 81
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.44 E-value=7.6e+02 Score=26.16 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCEEEEccCC---h---hHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEE
Q 048613 41 QEVVNLYHSNGITKMRIYDPN---E---PTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVA 114 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d---~---~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~ 114 (336)
.+.++.....|++.||+|++- . ..++++++.|+.+...+-....+.. +.+...+++++.... +.+.| +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~-t~~~~~~~a~~l~~~--Gad~I---~ 172 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVH-TIEKYVELAKELEEM--GCDSI---C 172 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCC-CHHHHHHHHHHHHHc--CCCEE---E
Confidence 334455556799999999752 2 3456667889988866643322211 334444444443222 22322 2
Q ss_pred eccccCCCCcchhhHHHHHHHHHHHH
Q 048613 115 VGNEISPSDEAASFVLPAMQNIYNAI 140 (336)
Q Consensus 115 VGNE~l~~~~s~~~L~~~i~~vr~~L 140 (336)
+- ...+-..|.++-..++.+|+.+
T Consensus 173 i~--Dt~G~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 173 IK--DMAGLLTPYAAYELVKALKEEV 196 (592)
T ss_pred EC--CcCCCcCHHHHHHHHHHHHHhC
Confidence 11 1112235777777777777765
No 82
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=26.17 E-value=4.8e+02 Score=25.08 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=71.3
Q ss_pred HHHHHHhCCCCEEEEccCC------------hhHHHHHhcC--CcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCc
Q 048613 43 VVNLYHSNGITKMRIYDPN------------EPTLQALRGS--NIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDV 108 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d------------~~vl~A~~~~--gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~ 108 (336)
+++.++..|++.|-+-+.| .++++++++. ++.|-+..+. ... ..+....+.+... +
T Consensus 99 ~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d--~~g--~~e~l~~l~~aG~------d 168 (302)
T TIGR00510 99 LAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPD--FRG--NIAALDILLDAPP------D 168 (302)
T ss_pred HHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCc--ccC--CHHHHHHHHHcCc------h
Confidence 3445667788888776432 2577777653 4555444332 111 2232222222111 1
Q ss_pred eEEEEEeccccCCC----CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHH
Q 048613 109 KFRYVAVGNEISPS----DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQ 184 (336)
Q Consensus 109 ~I~~I~VGNE~l~~----~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ld 184 (336)
.+..-.=+.+.++. ..+.++-+..++.+|+.. +.++++|..-.+. .++ ...+.+.++
T Consensus 169 v~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~------pgi~~~TgiIVGl-GET------------eee~~etl~ 229 (302)
T TIGR00510 169 VYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYL------PNLPTKSGIMVGL-GET------------NEEIKQTLK 229 (302)
T ss_pred hhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhC------CCCeecceEEEEC-CCC------------HHHHHHHHH
Confidence 11111112234442 457888888888888764 2356666544343 332 355677888
Q ss_pred HhhhcCCceeeeccCCcccc
Q 048613 185 FLKQTGAPLLANIYPYFSYI 204 (336)
Q Consensus 185 fl~~~~~~~~vNiyPff~~~ 204 (336)
+|.+ ..+-.+++.+|+.-+
T Consensus 230 ~Lre-lg~d~v~igqYl~p~ 248 (302)
T TIGR00510 230 DLRD-HGVTMVTLGQYLRPS 248 (302)
T ss_pred HHHh-cCCCEEEeecccCCC
Confidence 8754 467788999998853
No 83
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.16 E-value=3.4e+02 Score=26.10 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=11.4
Q ss_pred hhHHHHHhcCCcEEEEecCC
Q 048613 62 EPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 62 ~~vl~A~~~~gi~v~lGv~~ 81 (336)
++.++.++++|.++++++-.
T Consensus 187 ~ell~~L~~~g~~v~i~l~~ 206 (321)
T TIGR03822 187 PALIAALKTSGKTVYVALHA 206 (321)
T ss_pred HHHHHHHHHcCCcEEEEecC
Confidence 35566666666555555554
No 84
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.65 E-value=5.6e+02 Score=24.95 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=44.4
Q ss_pred CeeeEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhc
Q 048613 25 PIGVCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAF 104 (336)
Q Consensus 25 ~~Gi~Y~~~~~~~ps~~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~ 104 (336)
.+|||.-....+ +..++.++.+...+...|=+-.-+|...+.+++.|++|+.-|+. ...|+.+.+.
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~----- 122 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLEN----- 122 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHc-----
Confidence 567777543222 23355566555566666655554555567777888888865553 3445554432
Q ss_pred CCCceEEEEEecccc
Q 048613 105 TPDVKFRYVAVGNEI 119 (336)
Q Consensus 105 ~~~~~I~~I~VGNE~ 119 (336)
+.|. .|.-|.|.
T Consensus 123 -GaD~--vVaqG~EA 134 (320)
T cd04743 123 -GARK--FIFEGREC 134 (320)
T ss_pred -CCCE--EEEecCcC
Confidence 1121 46688885
No 85
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=25.35 E-value=5.5e+02 Score=29.60 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=33.5
Q ss_pred eEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCC---h---hHHHHHhcCCcEEEEecCCC
Q 048613 28 VCYGRVANNLPSDQEVVNLYHSNGITKMRIYDPN---E---PTLQALRGSNIELMLGIPNG 82 (336)
Q Consensus 28 i~Y~~~~~~~ps~~~v~~~l~~~~~~~VRlY~~d---~---~vl~A~~~~gi~v~lGv~~~ 82 (336)
|-|.+|.+|. .+..++....+|++.+|+||+- . ..++++++.|..+-..+-..
T Consensus 617 vgy~~ypd~v--v~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt 675 (1143)
T TIGR01235 617 VGYTNYPDNV--VKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYT 675 (1143)
T ss_pred cCccCCCHHH--HHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEe
Confidence 4455553322 1333445567899999999973 2 45667778898876666654
No 86
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=1.6e+02 Score=24.55 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecC
Q 048613 41 QEVVNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIP 80 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~ 80 (336)
..+.++|+.+|++.|=+...-+..+.++++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4678899999999888877778889999999999999877
No 87
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.60 E-value=3.4e+02 Score=25.84 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccchHHHHhhhcCCceeeeccCCccccCCCCc
Q 048613 130 LPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYIGDTKD 209 (336)
Q Consensus 130 ~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~p~~ 209 (336)
-.+..+++.++++.|+-+ +++.... ..+.|+ .+.+.++..++.+.+-|+.+|.=+.+....-
T Consensus 112 ~~a~~E~er~v~~~gf~g-~~l~p~~------~~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~--- 173 (293)
T COG2159 112 EAAAEELERRVRELGFVG-VKLHPVA------QGFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAGL--- 173 (293)
T ss_pred HHHHHHHHHHHHhcCceE-EEecccc------cCCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCccc---
Confidence 446677888888777632 4442211 111121 2447889999999999999966554442111
Q ss_pred ccccccccccCCccccCCCCccchhHHH-HHHHHHHHHHHhCCCCceEEEeccc--cCCCCC
Q 048613 210 IRLDYALFTSQGTPVQDGSLGYQNLFDA-SLDALYSALEKAGAPDVEVVVSETG--WPSEGG 268 (336)
Q Consensus 210 ~~~~~a~f~~~~~~~~d~~~~y~n~~d~-~~da~~~a~~~~g~~~~~v~I~ETG--WPs~G~ 268 (336)
... ..+. +++-+ .++ +++.+||+++.| +|..-.
T Consensus 174 ---~~~------------------~~~p~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 174 ---EKG------------------HSDPLYLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ---ccC------------------CCCchHHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 000 0000 22222 333 799999999999 887543
No 88
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=24.50 E-value=3e+02 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCceEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 048613 252 PDVEVVVSETGWPSEGGDAATVDNANTYYKNMINHVS 288 (336)
Q Consensus 252 ~~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~ 288 (336)
++.-+.|||+|.+.... ....+.|+.++...++.+.
T Consensus 89 ~~~~~aIGEiGLD~~~~-~~~~~~Q~~vf~~ql~lA~ 124 (258)
T PRK11449 89 PAKVVAVGEIGLDLFGD-DPQFERQQWLLDEQLKLAK 124 (258)
T ss_pred CCCEEEEEecccCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 33567899999996533 2456788899998888873
No 89
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.28 E-value=2.2e+02 Score=27.85 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=48.4
Q ss_pred hHHHHHhcCC-cEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHH
Q 048613 63 PTLQALRGSN-IELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIA 141 (336)
Q Consensus 63 ~vl~A~~~~g-i~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~ 141 (336)
.||+++-++| +++ .|=.- .+.. +++.|.+|+...+..++ ..|.+|+--|.-..+ . +-.+|+
T Consensus 176 ~VLkp~idsGkik~-~Ge~~--~d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------G----aI~aL~ 237 (341)
T COG4213 176 KVLKPLIDSGKIKV-VGEQW--TDGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------G----AIAALK 237 (341)
T ss_pred HHHHHHhhCCceEE-eeecc--cccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------H----HHHHHH
Confidence 6888776665 555 44322 1122 46778888888777765 569988887774432 1 225678
Q ss_pred hcCCCCceEEEe
Q 048613 142 SANLQAQTKVST 153 (336)
Q Consensus 142 ~~gl~~~i~VtT 153 (336)
..||++.+|||=
T Consensus 238 a~Gl~g~vpVsG 249 (341)
T COG4213 238 AQGLAGKVPVSG 249 (341)
T ss_pred hcccCCCCcccC
Confidence 889998999864
No 90
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.09 E-value=68 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=21.4
Q ss_pred eeEecCCCCCCCCHHHHHHHHHhCCCCEEEEc
Q 048613 27 GVCYGRVANNLPSDQEVVNLYHSNGITKMRIY 58 (336)
Q Consensus 27 Gi~Y~~~~~~~ps~~~v~~~l~~~~~~~VRlY 58 (336)
|||-| +.+--+.++..+.|.+.|++.||+|
T Consensus 10 GINVG--G~nki~MaeLr~~l~~~Gf~~V~Ty 39 (137)
T PF08002_consen 10 GINVG--GKNKIKMAELREALEDLGFTNVRTY 39 (137)
T ss_dssp S-SBT--TBS---HHHHHHHHHHCT-EEEEEE
T ss_pred ceecC--CCCcccHHHHHHHHHHcCCCCceEE
Confidence 78887 4454467888899999999999999
No 91
>PRK07198 hypothetical protein; Validated
Probab=23.01 E-value=72 Score=32.06 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=33.1
Q ss_pred HHHHHhCCCCEE-EEccCChhHHHHHhcCCcEEEEecCC
Q 048613 44 VNLYHSNGITKM-RIYDPNEPTLQALRGSNIELMLGIPN 81 (336)
Q Consensus 44 ~~~l~~~~~~~V-RlY~~d~~vl~A~~~~gi~v~lGv~~ 81 (336)
.++|+.+|++++ |+.+.++.-..++.+.||+|.=-++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678999999999 99999987888999999999866654
No 92
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=22.93 E-value=1.5e+02 Score=26.81 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCcEEEEecCCCc
Q 048613 44 VNLYHSNGITKMRIYDPNEPTLQALRGSNIELMLGIPNGD 83 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gi~v~lGv~~~~ 83 (336)
.++|+..|+++||+-+.+|.=..++.+.||+|.--++...
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 5688999999999999898778888999999998888754
No 93
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=21.99 E-value=7.5e+02 Score=24.58 Aligned_cols=136 Identities=12% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCHHHHHHHH---HhCCCCEEEEccCC--------------hhHHHHHhcC-CcE-EEEecCCCcccCCCCHHHHHHHHH
Q 048613 38 PSDQEVVNLY---HSNGITKMRIYDPN--------------EPTLQALRGS-NIE-LMLGIPNGDLQALSNPSVASSWVQ 98 (336)
Q Consensus 38 ps~~~v~~~l---~~~~~~~VRlY~~d--------------~~vl~A~~~~-gi~-v~lGv~~~~~~~~a~~~~a~~w~~ 98 (336)
-++++|++.+ ...|++.|.+.+.| .++++++.+. |++ +.++.-. ...+ +.+ ..+.++
T Consensus 168 r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~--p~~i-~~e-ll~~m~ 243 (429)
T TIGR00089 168 RPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSH--PDDV-TDD-LIELIA 243 (429)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCC--hhhc-CHH-HHHHHH
Confidence 3667776644 34588888877522 2466666654 443 3332111 1112 222 223333
Q ss_pred HhhhhcCCCceEEEEEeccccCCC--------CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcc
Q 048613 99 NNILAFTPDVKFRYVAVGNEISPS--------DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 99 ~~i~~~~~~~~I~~I~VGNE~l~~--------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~ 170 (336)
+. + ..+..+.+|=|-... ..+.++....++.+|+. | ..+.|++..-.+ +|
T Consensus 244 ~~-----~-~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~----~--~~i~i~~~~IvG-----~P----- 301 (429)
T TIGR00089 244 EN-----P-KVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK----I--PDAAITTDIIVG-----FP----- 301 (429)
T ss_pred hC-----C-CccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHH----C--CCCEEEeeEEEE-----CC-----
Confidence 31 1 134566666664331 45678888888877775 2 134565543222 22
Q ss_pred cccccccccchHHHHhhhcCCceeeeccCCcc
Q 048613 171 FADNANSYIGPIVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 171 f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~ 202 (336)
.+-...+...++|+.+. .+-.+++|+|--
T Consensus 302 --gET~ed~~~tl~~i~~~-~~~~~~~~~~sp 330 (429)
T TIGR00089 302 --GETEEDFEETLDLVEEV-KFDKLHSFIYSP 330 (429)
T ss_pred --CCCHHHHHHHHHHHHhc-CCCEeeccccCC
Confidence 12235677788987654 345677777654
No 94
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=21.94 E-value=60 Score=32.33 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=22.1
Q ss_pred HHHHhCCCCceEEEeccccCCCCCC--CCCHHHHHHHHH
Q 048613 245 ALEKAGAPDVEVVVSETGWPSEGGD--AATVDNANTYYK 281 (336)
Q Consensus 245 a~~~~g~~~~~v~I~ETGWPs~G~~--~as~~na~~y~~ 281 (336)
+++.+...|+.|+|.| |..|+. ..-++.++...+
T Consensus 188 ~l~~A~~~~~gI~IMe---P~~gG~l~~~vP~~~~~l~~ 223 (391)
T COG1453 188 GLKYAASKGLGIFIME---PLDGGGLLYNVPEKLEELCR 223 (391)
T ss_pred HHHHHHhCCCcEEEEe---eCCCCCcccCCCHHHHHHHH
Confidence 3444445789999999 999988 323455554433
No 95
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=21.56 E-value=5.2e+02 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhC--CCCEEEEccCCh-------hHHHHHhcCCcEEEE
Q 048613 38 PSDQEVVNLYHSN--GITKMRIYDPNE-------PTLQALRGSNIELML 77 (336)
Q Consensus 38 ps~~~v~~~l~~~--~~~~VRlY~~d~-------~vl~A~~~~gi~v~l 77 (336)
.+.+++++.++.. .++.|.+.+-+| ++++.+++.|+++.+
T Consensus 47 ~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 47 IEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKL 95 (191)
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEE
Confidence 4678888877653 368899888663 456667777877655
No 96
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.03 E-value=5.4e+02 Score=25.94 Aligned_cols=74 Identities=7% Similarity=0.089 Sum_probs=44.8
Q ss_pred EEEEEeccccCCC--------CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCcccccccccccch
Q 048613 110 FRYVAVGNEISPS--------DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNANSYIGP 181 (336)
Q Consensus 110 I~~I~VGNE~l~~--------~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
...|.+|=|-... ..+.++....++.+|+.. ..+.+++..-. .+| .+-...+..
T Consensus 259 ~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------~~i~i~~d~Iv-----G~P-------gET~ed~~~ 320 (446)
T PRK14337 259 CPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR------PDIALTTDLIV-----GFP-------GETEEDFEQ 320 (446)
T ss_pred cCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCeEEEeEEE-----ECC-------CCCHHHHHH
Confidence 4577777665431 457888888888888773 13556654322 232 122355777
Q ss_pred HHHHhhhcCCceeeeccCCcc
Q 048613 182 IVQFLKQTGAPLLANIYPYFS 202 (336)
Q Consensus 182 ~ldfl~~~~~~~~vNiyPff~ 202 (336)
.++|+.+. .+-.+|+|+|-.
T Consensus 321 tl~~l~~~-~~~~~~~f~ysp 340 (446)
T PRK14337 321 TLEAMRTV-GFASSFSFCYSD 340 (446)
T ss_pred HHHHHHhc-CCCeeEEEecCC
Confidence 88887554 456677776643
No 97
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.02 E-value=6.1e+02 Score=24.06 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=41.8
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCCccccccc--ccccchHHHHhhhcCCceeeeccCC
Q 048613 123 DEAASFVLPAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSAGSFADNA--NSYIGPIVQFLKQTGAPLLANIYPY 200 (336)
Q Consensus 123 ~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~~~f~~~~--~~~l~~~ldfl~~~~~~~~vNiyPf 200 (336)
..+.++|.+.++.+|+. | ||+..-.--..|. ..-|.|.-|- -|.+..+++.|++.+=-+++.+.||
T Consensus 26 ~~s~~~v~~~~~~~~~~----~----iP~d~i~iD~~w~----~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~ 93 (303)
T cd06592 26 DINQETVLNYAQEIIDN----G----FPNGQIEIDDNWE----TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPF 93 (303)
T ss_pred CcCHHHHHHHHHHHHHc----C----CCCCeEEeCCCcc----ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCe
Confidence 34566777777666554 4 4443211101122 2223344322 2678899999999999999999999
Q ss_pred ccc
Q 048613 201 FSY 203 (336)
Q Consensus 201 f~~ 203 (336)
...
T Consensus 94 i~~ 96 (303)
T cd06592 94 INT 96 (303)
T ss_pred eCC
Confidence 873
No 98
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.94 E-value=2.9e+02 Score=25.69 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCEEEEccCC---hhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEecc
Q 048613 41 QEVVNLYHSNGITKMRIYDPN---EPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVGN 117 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d---~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VGN 117 (336)
.+-+++|.+.++..+++=+.| -..|+.++++|..|+|+.-...+. ....|.+.+++. ....|.....=+
T Consensus 79 ~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~---EI~~Av~~~~~~-----~~~~l~llHC~s 150 (241)
T PF03102_consen 79 EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE---EIERAVEVLREA-----GNEDLVLLHCVS 150 (241)
T ss_dssp HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH---HHHHHHHHHHHH-----CT--EEEEEE-S
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH---HHHHHHHHHHhc-----CCCCEEEEecCC
Confidence 444667777788888887765 368999999999999987754322 224554545321 123333222111
Q ss_pred ccCCCCcchhhH-HHHHHHHHHHHHhcCCCCceEEEeeee
Q 048613 118 EISPSDEAASFV-LPAMQNIYNAIASANLQAQTKVSTAIQ 156 (336)
Q Consensus 118 E~l~~~~s~~~L-~~~i~~vr~~L~~~gl~~~i~VtT~~~ 156 (336)
.. +..++++ +..|..+|+.. .+||+-+|.
T Consensus 151 ~Y---P~~~e~~NL~~i~~L~~~f-------~~~vG~SDH 180 (241)
T PF03102_consen 151 SY---PTPPEDVNLRVIPTLKERF-------GVPVGYSDH 180 (241)
T ss_dssp SS---S--GGG--TTHHHHHHHHS-------TSEEEEEE-
T ss_pred CC---CCChHHcChHHHHHHHHhc-------CCCEEeCCC
Confidence 11 1112222 67788888875 489998763
No 99
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.91 E-value=2.1e+02 Score=26.49 Aligned_cols=50 Identities=6% Similarity=0.137 Sum_probs=37.0
Q ss_pred CeeeEecCCCCCCC----CHHHHHHHHHhCCCCEEEEccCC--------hhHHHHHhcCCcE
Q 048613 25 PIGVCYGRVANNLP----SDQEVVNLYHSNGITKMRIYDPN--------EPTLQALRGSNIE 74 (336)
Q Consensus 25 ~~Gi~Y~~~~~~~p----s~~~v~~~l~~~~~~~VRlY~~d--------~~vl~A~~~~gi~ 74 (336)
.+=|+-||.-+..+ +.+.-+.+|+..|.++|+.|-+. ..|.+|+++.|+.
T Consensus 118 ~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 118 LVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 45566777655543 34666789999999999999775 2578888888874
No 100
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=20.83 E-value=2e+02 Score=23.71 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CC---hhHHHHHhcCCcEEEE
Q 048613 41 QEVVNLYHSNGITKMRIY--D--------PN---EPTLQALRGSNIELML 77 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--~--------~d---~~vl~A~~~~gi~v~l 77 (336)
+++.+..+.+|++.|+++ + .- +.+|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 566667778899888887 3 22 4789999999999753
No 101
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.81 E-value=7.9e+02 Score=23.96 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCCCEEEEccCC---hhHHHHHhcCCcEEEEecCCCcccCCCCHHHHHHHHHHhhhhcCCCceEEEEEecc
Q 048613 41 QEVVNLYHSNGITKMRIYDPN---EPTLQALRGSNIELMLGIPNGDLQALSNPSVASSWVQNNILAFTPDVKFRYVAVGN 117 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d---~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~a~~w~~~~i~~~~~~~~I~~I~VGN 117 (336)
.+-+++|.+.++..+++=+.| -..|++++++|..|+|..-.. .+.....|.++++.+ ..+...|..+-..+
T Consensus 99 ~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma---tl~Ei~~Av~~i~~~---G~~~~~i~llhC~s 172 (329)
T TIGR03569 99 LESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA---TLEEIEAAVGVLRDA---GTPDSNITLLHCTT 172 (329)
T ss_pred HHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC---CHHHHHHHHHHHHHc---CCCcCcEEEEEECC
Confidence 344567777778888887665 378999999999999987763 232334555555431 11111354444444
Q ss_pred cc-CCC-CcchhhHHHHHHHHHHHHHhcCCCCceEEEeee
Q 048613 118 EI-SPS-DEAASFVLPAMQNIYNAIASANLQAQTKVSTAI 155 (336)
Q Consensus 118 E~-l~~-~~s~~~L~~~i~~vr~~L~~~gl~~~i~VtT~~ 155 (336)
+. -.. +.. +..|..+|+.. .+||+-++
T Consensus 173 ~YP~~~~~~n----L~~I~~Lk~~f-------~~pVG~Sd 201 (329)
T TIGR03569 173 EYPAPFEDVN----LNAMDTLKEAF-------DLPVGYSD 201 (329)
T ss_pred CCCCCcccCC----HHHHHHHHHHh-------CCCEEECC
Confidence 32 111 222 67788887775 36787543
No 102
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=20.76 E-value=1.8e+02 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCEEEEc--cCC---hhHHHHHhcCCcEEEE
Q 048613 41 QEVVNLYHSNGITKMRIY--DPN---EPTLQALRGSNIELML 77 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--~~d---~~vl~A~~~~gi~v~l 77 (336)
+.+.+.++..|++.|+++ +.. ..+++++..+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 445566677899998888 333 4789999999998654
No 103
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=20.73 E-value=6.4e+02 Score=22.84 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCC-----------hhHHHHHhcCCcEEEEecCCCc---ccCCC---CHHHHHHHHHHh
Q 048613 38 PSDQEVVNLYHSNGITKMRIYDPN-----------EPTLQALRGSNIELMLGIPNGD---LQALS---NPSVASSWVQNN 100 (336)
Q Consensus 38 ps~~~v~~~l~~~~~~~VRlY~~d-----------~~vl~A~~~~gi~v~lGv~~~~---~~~~a---~~~~a~~w~~~~ 100 (336)
|+. ...+.+++.+...|=-|-++ +.=++.+...|++++. |++.. ..... ....|.+.++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 56667888888777777433 1235667789999765 55533 22222 223444555554
Q ss_pred hhhcCCCceEEEEEeccccCCCCcchhhHHHHHHHHHHHHHhcCC
Q 048613 101 ILAFTPDVKFRYVAVGNEISPSDEAASFVLPAMQNIYNAIASANL 145 (336)
Q Consensus 101 i~~~~~~~~I~~I~VGNE~l~~~~s~~~L~~~i~~vr~~L~~~gl 145 (336)
..--.|...+.++.|=......+ -...+++|++-+.+.|...|+
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~~-~~~~v~~Y~~a~~~~l~~~gY 142 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDDE-VTEVILPYFRGWNDALHEAGY 142 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcch-hHHHHHHHHHHHHHHHHhcCC
Confidence 44334656666777755543222 356999999999999999987
No 104
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.34 E-value=6.6e+02 Score=22.86 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeeeccccccccCCCC--c--ccccccccccchHHHHhhhcCCceeeeccCCccccCC
Q 048613 131 PAMQNIYNAIASANLQAQTKVSTAIQTSLLGNSYPPSA--G--SFADNANSYIGPIVQFLKQTGAPLLANIYPYFSYIGD 206 (336)
Q Consensus 131 ~~i~~vr~~L~~~gl~~~i~VtT~~~~~~~~~~~pPS~--~--~f~~~~~~~l~~~ldfl~~~~~~~~vNiyPff~~~~~ 206 (336)
..++++|+.+++.|+ .+..-++.. ..+|++- + .-+++....++..+++.+.-+... +.++|.......
T Consensus 47 ~~~~~l~~~~~~~gl--~v~s~~~~~-----~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~-i~~~~~~~~~~~ 118 (275)
T PRK09856 47 GGIKQIKALAQTYQM--PIIGYTPET-----NGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGY-TLISAAHAGYLT 118 (275)
T ss_pred hHHHHHHHHHHHcCC--eEEEecCcc-----cCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCE-EEEcCCCCCCCC
Confidence 357889999999997 232111110 1121110 0 011111245667777766666554 355565332110
Q ss_pred CCcccccccccccCCccccCCCCccchhHHHHHHHHHHHHHHhCCCCceEEEeccccCCCCCCCCCHHHHHHHHHH
Q 048613 207 TKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGAPDVEVVVSETGWPSEGGDAATVDNANTYYKN 282 (336)
Q Consensus 207 p~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~ 282 (336)
+ ....++.+++.+....+.+...++++. -|+-.|..+....+++...++.+.
T Consensus 119 ~-----------------------~~~~~~~~~~~l~~l~~~a~~~gv~l~-iE~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 119 P-----------------------PNVIWGRLAENLSELCEYAENIGMDLI-LEPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred C-----------------------HHHHHHHHHHHHHHHHHHHHHcCCEEE-EecCCCCcccccCCHHHHHHHHHH
Confidence 0 112233344444333332223466665 488666555446777777665543
Done!