Your job contains 1 sequence.
>048615
MDDGMGLNGAYSDSAAAGGADLYDPDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSS
NNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYL
ENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLF
VNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNR
FIKLWWANRDSIPDDGISGVNVSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIV
PAADVSLPAPDHPTVITNSPKPPPPLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDK
LEKQAGGKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAVASPRAEMMADKNKLVDIV
LSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYKLDNRPTAFRIMPPLPVGFADV
AVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSWQG
HDLQFTWLMPSSSSNDLGNKEKTSTFLKGSSDTDVQKEEKLSSVVSQEAAASGNAESENS
ERKSSVEHAELQEVSQPSPTPIIAEEESPKDNVC
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048615
(634 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089094 - symbol:AT3G27700 species:3702 "Arabi... 889 4.6e-89 1
DICTYBASE|DDB_G0277217 - symbol:DDB_G0277217 "RNA-binding... 206 2.1e-14 2
ZFIN|ZDB-GENE-050706-50 - symbol:zgc:109736 "zgc:109736" ... 158 7.7e-12 2
UNIPROTKB|E1BQE3 - symbol:RBM26 "Uncharacterized protein"... 143 7.8e-10 2
UNIPROTKB|E1BQE4 - symbol:RBM26 "Uncharacterized protein"... 143 8.3e-10 2
UNIPROTKB|F1P7R9 - symbol:RBM26 "Uncharacterized protein"... 141 2.0e-09 2
UNIPROTKB|J9NRX5 - symbol:RBM26 "Uncharacterized protein"... 141 2.2e-09 2
UNIPROTKB|Q5T8P6 - symbol:RBM26 "RNA-binding protein 26" ... 141 2.2e-09 2
UNIPROTKB|F1RP70 - symbol:RBM26 "Uncharacterized protein"... 141 2.2e-09 2
UNIPROTKB|Q2T9I5 - symbol:rbm26 "RNA-binding protein 26" ... 133 5.4e-09 2
UNIPROTKB|F1MYG6 - symbol:RBM26 "Uncharacterized protein"... 137 5.9e-09 2
ZFIN|ZDB-GENE-110411-31 - symbol:rbm27 "RNA binding motif... 149 8.8e-09 2
MGI|MGI:1921463 - symbol:Rbm26 "RNA binding motif protein... 136 9.1e-09 3
UNIPROTKB|F1NM59 - symbol:Gga.29875 "Uncharacterized prot... 136 9.4e-09 3
FB|FBgn0002044 - symbol:swm "second mitotic wave missing"... 141 5.0e-08 3
RGD|1308297 - symbol:RGD1308297 "similar to CG10084-PA" s... 133 6.0e-08 3
UNIPROTKB|E1BQE2 - symbol:RBM26 "Uncharacterized protein"... 143 1.1e-07 2
UNIPROTKB|H0Y5U7 - symbol:SPEN "Msx2-interacting protein"... 116 3.5e-06 2
UNIPROTKB|G4MT73 - symbol:MGG_07147 "Uncharacterized prot... 117 3.5e-06 2
DICTYBASE|DDB_G0280393 - symbol:DDB_G0280393 "CCHC-type z... 138 4.5e-06 1
UNIPROTKB|F1MB97 - symbol:SPEN "Uncharacterized protein" ... 116 1.5e-05 2
UNIPROTKB|F1RM18 - symbol:RBM27 "Uncharacterized protein"... 134 2.4e-05 1
UNIPROTKB|Q9P2N5 - symbol:RBM27 "RNA-binding protein 27" ... 136 2.6e-05 2
UNIPROTKB|F1LU10 - symbol:LOC100365546 "Protein LOC100365... 116 3.9e-05 3
UNIPROTKB|F1M815 - symbol:LOC100365546 "Protein LOC100365... 116 4.0e-05 3
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 131 8.1e-05 1
UNIPROTKB|E1BCT9 - symbol:RBM27 "Uncharacterized protein"... 134 0.00013 3
DICTYBASE|DDB_G0275027 - symbol:DDB_G0275027 "SRA stem-lo... 102 0.00015 1
WB|WBGene00015143 - symbol:B0336.3 species:6239 "Caenorha... 127 0.00017 1
UNIPROTKB|F1LWJ2 - symbol:F1LWJ2 "Uncharacterized protein... 132 0.00030 2
UNIPROTKB|F1M1R4 - symbol:F1M1R4 "Uncharacterized protein... 132 0.00034 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 120 0.00044 1
UNIPROTKB|E2QV41 - symbol:RBM27 "Uncharacterized protein"... 131 0.00045 2
UNIPROTKB|J9NT04 - symbol:RBM27 "Uncharacterized protein"... 131 0.00046 2
MGI|MGI:2147194 - symbol:Rbm27 "RNA binding motif protein... 129 0.00074 2
UNIPROTKB|Q6BLU8 - symbol:CWC2 "Pre-mRNA-splicing factor ... 116 0.00085 1
>TAIR|locus:2089094 [details] [associations]
symbol:AT3G27700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB018114 EMBL:AY062574 EMBL:BT000780
EMBL:AK229929 IPI:IPI00547344 RefSeq:NP_189407.2 RefSeq:NP_851008.1
UniGene:At.8026 ProteinModelPortal:Q9LVX1 SMR:Q9LVX1 PaxDb:Q9LVX1
PRIDE:Q9LVX1 EnsemblPlants:AT3G27700.1 EnsemblPlants:AT3G27700.2
GeneID:822392 KEGG:ath:AT3G27700 TAIR:At3g27700 eggNOG:NOG280405
HOGENOM:HOG000078746 InParanoid:Q9LVX1 KO:K13192 OMA:DQPLWNN
PhylomeDB:Q9LVX1 ProtClustDB:CLSN2690575 Genevestigator:Q9LVX1
Uniprot:Q9LVX1
Length = 908
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 223/548 (40%), Positives = 309/548 (56%)
Query: 45 HSSNDETESLLNEDSSN--NHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKN 102
++S ET ++ +S+ + ++ D ++ D G S++TS SVWGR+ S +
Sbjct: 312 NNSTGETSGAISTLNSHGVDENVAPLDDSNQDAAENGCGIRD-SRSTSQSVWGRMKGSNS 370
Query: 103 RSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQN 162
++N KEK DA LNS E++ KE S+ S R GK+ G+++ K +D S+ N
Sbjct: 371 QANSKEKADAVLNSSAVPEDQLKE-----VSVNSS-RHGKQNHVGESVAKVVD-SSNISN 423
Query: 163 DHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSK 222
D M N RKP+QKA+RTLFVN VP +SNRR+ +L+HFQKFG+V+DI+IP+NSERAFVQFSK
Sbjct: 424 DMMNNTRKPTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSK 483
Query: 223 REEAEAALKSPDAVMGNRFIKLWWANRDSIPDDGIS-GVNVSMTSHGMTAASFPAHTSVT 281
REEAE+AL++PDAVMGNRFIKLWWANRDSIPD+G+S G SM MTA+ +
Sbjct: 484 REEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIA 543
Query: 282 NKVKDNNLQSTTLKGGNIVPAADVSLPAPDHPTVITNSXXXXX-XXXXXXDNXXXXXXXX 340
K N++ S A S P P V+T S D
Sbjct: 544 AASKSNHVSSIAKVPTFQTGGAPSSSEQPK-PVVVTTSGPKVTPLQQKKADTLERLKETL 602
Query: 341 XXXXXXXXXXXNDFRRQLDKLEKQAGG-KSDVVSEKAAKRLKVGIAADVAKATARSSDST 399
N++R++L LEKQ K + E AKR+K+ D A SDS
Sbjct: 603 RKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKL----DTA------SDSG 652
Query: 400 AAVASPRAEMMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYK 459
AA+ASP+ E DK + LS + K++T +S +FKQ+ + ++NRYK
Sbjct: 653 AAIASPKTESSTDKKVPILKPLSTA-KLSTETPSPDSKNFKQRPYSFTTSLNAPMVNRYK 711
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
LDNR T +++PPLP G ADVAV+KEHFSSYG+++ VELED + D+G D + R
Sbjct: 712 LDNRTTTIKVVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASI--DSGKDHETQNESR 769
Query: 520 ---VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKEKTSTFLKGSSDTDVQ 576
V+F R +AE+AF + K WQ H LQ W+ S+ + N S L S D ++
Sbjct: 770 AACVTFVKRSAAEKAFANAKCWQEHTLQLVWVT-RQSNRESNNNNNNSNSLSVSRD-NLS 827
Query: 577 KEEKLSSV 584
+ K +SV
Sbjct: 828 SKNKCASV 835
Score = 335 (123.0 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 87/241 (36%), Positives = 126/241 (52%)
Query: 395 SSDSTAAVASPRAEMMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFL 454
+SDS AA+ASP+ E DK + LS + K++T +S +FKQ+ + +
Sbjct: 648 ASDSGAAIASPKTESSTDKKVPILKPLSTA-KLSTETPSPDSKNFKQRPYSFTTSLNAPM 706
Query: 455 MNRYKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASK 514
+NRYKLDNR T +++PPLP G ADVAV+KEHFSSYG+++ VELED + D+G D
Sbjct: 707 VNRYKLDNRTTTIKVVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASI--DSGKDHET 764
Query: 515 NCQVR---VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKEKTSTFLKGSS 571
+ R V+F R +AE+AF + K WQ H LQ W+ S+ + N S L S
Sbjct: 765 QNESRAACVTFVKRSAAEKAFANAKCWQEHTLQLVWVT-RQSNRESNNNNNNSNSLSVSR 823
Query: 572 DTDVQKEEKLSSVVXXXXXXXXXXXXXXXXRKSSVEHAELQEVSQPSPTPIIAEEESPKD 631
D ++ + K +SV + SS E E VS + + + +E D
Sbjct: 824 D-NLSSKNKCASV-------SNDPKPAVEVKTSSTEEPENTNVSGDNDSTLDKQETKESD 875
Query: 632 N 632
N
Sbjct: 876 N 876
Score = 164 (62.8 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 25 PDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAA 84
PDQPLWNN+ +TS ++ L+S + E++ D SN D+A+N +R+
Sbjct: 306 PDQPLWNNSTGETSGAISTLNSHGVD-ENVAPLDDSNQ------DAAENGCGIRD----- 353
Query: 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKE 126
S++TS SVWGR+ S +++N KEK DA LNS E++ KE
Sbjct: 354 -SRSTSQSVWGRMKGSNSQANSKEKADAVLNSSAVPEDQLKE 394
>DICTYBASE|DDB_G0277217 [details] [associations]
symbol:DDB_G0277217 "RNA-binding protein 27"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 dictyBase:DDB_G0277217 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AAFI02000019 eggNOG:NOG280405 RefSeq:XP_642694.1
ProteinModelPortal:Q86AR1 EnsemblProtists:DDB0169078 GeneID:8620884
KEGG:ddi:DDB_G0277217 InParanoid:Q86AR1 OMA:DFLHENT Uniprot:Q86AR1
Length = 1163
Score = 206 (77.6 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 52/216 (24%), Positives = 104/216 (48%)
Query: 31 NNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTS 90
NNN + + ++ N +N++ + ++ +++ +N++ N + N +
Sbjct: 454 NNNNINNNQPSFSMMDQNQMYIGQMNQNQMDFNN-HNNNNNNNNMDFNNMDFNINNNNNN 512
Query: 91 MSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAI 150
+++ ++ N +N+ + +N+ + N ED E Q + R G+
Sbjct: 513 NNIYNNNNNNNNNNNINNNNNNNINNNNNSNNYNNEDDEEFNDFQNNNNNNNR---GNKQ 569
Query: 151 QKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIP 210
N+ S+ PS ++ + L + N+PL+ N E + HF KFG + +I
Sbjct: 570 YDNIKTSSNC----------PSSESTK-LVITNIPLQQNIEEEIREHFSKFGTITNI-TK 617
Query: 211 LNSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
L++ ++ ++FS EA A+KSP+A+M NRFIKL+W
Sbjct: 618 LSTAKSMIEFSNNSEAMKAMKSPEAIMNNRFIKLFW 653
Score = 65 (27.9 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTWL 548
+++ F R+SAER F+ K ++G L W+
Sbjct: 990 IQIKFGKRQSAERVFVVAKVYKGKSLNIQWV 1020
>ZFIN|ZDB-GENE-050706-50 [details] [associations]
symbol:zgc:109736 "zgc:109736" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 ZFIN:ZDB-GENE-050706-50 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:CABZ01074409 EMBL:CABZ01074410 EMBL:CABZ01074411
EMBL:CABZ01074412 IPI:IPI00634705 Ensembl:ENSDART00000114086
ArrayExpress:F1QJD3 Bgee:F1QJD3 Uniprot:F1QJD3
Length = 1009
Score = 158 (60.7 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 156 PSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-- 213
P+ N H + + P A L + +P + N L HF KFG +V++ + N+
Sbjct: 519 PNFSKPNHHGFHRKVPFPLANTKLAIGQIPPELNNISKLNQHFSKFGTIVNLQVAYNNDP 578
Query: 214 ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDSIPDDGISGVNVSMTSH-GMTAA 272
E A +QF+ EEA A++S +AV+ NRFI++ W D++ ++ H + A
Sbjct: 579 EGALIQFATPEEARRAIQSTEAVLNNRFIRVHWHREDTVE-------HMHPKPHPSVQPA 631
Query: 273 SFPAHTSVTNKVKD 286
PA T++ VKD
Sbjct: 632 QEPAVTALKQSVKD 645
Score = 89 (36.4 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 460 LDNRPTAFRIMPPLPVGF--ADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQ 517
+D+RP A I GF AD L HF+ YG++ ++ED +
Sbjct: 888 VDHRPRALEIS-----GFSEADRVDLLPHFAQYGEIEDCQMEDSSL-------------S 929
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSN 555
+++ TR AERA + G +L+ W P++S N
Sbjct: 930 AIITYKTRAEAERAAIHGVRLNNQELRLAWHKPTASLN 967
>UNIPROTKB|E1BQE3 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13192 Gene3D:1.20.1390.10 CTD:64062
GeneTree:ENSGT00510000046929 EMBL:AADN02042714 EMBL:AADN02042715
EMBL:AADN02042716 EMBL:AADN02042717 IPI:IPI00602502
RefSeq:XP_416998.2 UniGene:Gga.50524 Ensembl:ENSGALT00000027332
GeneID:418804 KEGG:gga:418804 NextBio:20821945 ArrayExpress:E1BQE3
Uniprot:E1BQE3
Length = 986
Score = 143 (55.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF KFG +V++ + E A +QF+ EEA+ A+ S +AV
Sbjct: 532 LELRKVPPELNNISKLNDHFSKFGNLVNLQVAYQGDPEGALIQFATHEEAKKAISSTEAV 591
Query: 237 MGNRFIKLWWANRDSIP 253
+ NRFIK++W S P
Sbjct: 592 LNNRFIKVYWHREGSAP 608
Score = 85 (35.0 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 865 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 909
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G +L+ W P +S + + +E
Sbjct: 910 -TFKTRAEAEAAAIHGSRFKGQELKLAWNKPVASMSAVETEE 950
>UNIPROTKB|E1BQE4 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0010923
"negative regulation of phosphatase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0010923 GeneTree:ENSGT00510000046929 OMA:PREKPPN
EMBL:AADN02042714 EMBL:AADN02042715 EMBL:AADN02042716
EMBL:AADN02042717 IPI:IPI00599086 Ensembl:ENSGALT00000027331
ArrayExpress:E1BQE4 Uniprot:E1BQE4
Length = 1011
Score = 143 (55.4 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF KFG +V++ + E A +QF+ EEA+ A+ S +AV
Sbjct: 533 LELRKVPPELNNISKLNDHFSKFGNLVNLQVAYQGDPEGALIQFATHEEAKKAISSTEAV 592
Query: 237 MGNRFIKLWWANRDSIP 253
+ NRFIK++W S P
Sbjct: 593 LNNRFIKVYWHREGSAP 609
Score = 85 (35.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 890 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 934
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G +L+ W P +S + + +E
Sbjct: 935 -TFKTRAEAEAAAIHGSRFKGQELKLAWNKPVASMSAVETEE 975
>UNIPROTKB|F1P7R9 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13192 Gene3D:1.20.1390.10 CTD:64062
GeneTree:ENSGT00510000046929 EMBL:AAEX03013266 EMBL:AAEX03013264
EMBL:AAEX03013265 RefSeq:XP_858194.2 Ensembl:ENSCAFT00000008475
GeneID:476955 KEGG:cfa:476955 Uniprot:F1P7R9
Length = 980
Score = 141 (54.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 58/234 (24%), Positives = 96/234 (41%)
Query: 25 PDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAA 84
P P +G D P A T + ++ L +D+ D D N +
Sbjct: 382 PPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPSLFTADTYDTD--GYNPEAPS 439
Query: 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRI 144
++ NTS ++ R R N+ I T +D E ++ ++ + S R + I
Sbjct: 440 IT-NTSRPMY-RHRVHAQRPNL---IGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTI 494
Query: 145 IEGDA---IQKNMDPSTKAQNDHMRNIRKPSQKALRT--LFVNNVPLKSNRREALLSHFQ 199
G+ +K + +K Q L + VP + N L HF
Sbjct: 495 GSGEPGAPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFS 554
Query: 200 KFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251
+FG +V++ + N E A +QF+ EEA+ A+ S +AV+ NRFIK++W S
Sbjct: 555 RFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGS 608
Score = 83 (34.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 859 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 903
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 904 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPITNISAVETEE 944
>UNIPROTKB|J9NRX5 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
OMA:PREKPPN EMBL:AAEX03013266 EMBL:AAEX03013264 EMBL:AAEX03013265
Ensembl:ENSCAFT00000049269 Uniprot:J9NRX5
Length = 1007
Score = 141 (54.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 58/234 (24%), Positives = 96/234 (41%)
Query: 25 PDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAA 84
P P +G D P A T + ++ L +D+ D D N +
Sbjct: 382 PPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPSLFTADTYDTD--GYNPEAPS 439
Query: 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRI 144
++ NTS ++ R R N+ I T +D E ++ ++ + S R + I
Sbjct: 440 IT-NTSRPMY-RHRVHAQRPNL---IGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTI 494
Query: 145 IEGDA---IQKNMDPSTKAQNDHMRNIRKPSQKALRT--LFVNNVPLKSNRREALLSHFQ 199
G+ +K + +K Q L + VP + N L HF
Sbjct: 495 GSGEPGAPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFS 554
Query: 200 KFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251
+FG +V++ + N E A +QF+ EEA+ A+ S +AV+ NRFIK++W S
Sbjct: 555 RFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGS 608
Score = 83 (34.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 886 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 930
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 931 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPITNISAVETEE 971
>UNIPROTKB|Q5T8P6 [details] [associations]
symbol:RBM26 "RNA-binding protein 26" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
eggNOG:NOG280405 KO:K13192 Gene3D:1.20.1390.10 EMBL:AK024610
EMBL:AK027339 EMBL:AK027456 EMBL:AK302871 EMBL:AF116667
EMBL:AL159974 EMBL:AL139006 EMBL:BC041655 EMBL:BC111697
EMBL:BC111739 EMBL:AL834343 EMBL:BX648672 EMBL:AF273052
IPI:IPI00032188 IPI:IPI00166555 IPI:IPI00329545 IPI:IPI00646837
IPI:IPI00795335 IPI:IPI00827541 RefSeq:NP_071401.3
UniGene:Hs.558528 ProteinModelPortal:Q5T8P6 SMR:Q5T8P6
IntAct:Q5T8P6 PhosphoSite:Q5T8P6 DMDM:124021002 PaxDb:Q5T8P6
PRIDE:Q5T8P6 Ensembl:ENST00000267229 Ensembl:ENST00000327303
Ensembl:ENST00000438724 Ensembl:ENST00000438737 GeneID:64062
KEGG:hsa:64062 UCSC:uc001vkx.2 UCSC:uc001vky.2 UCSC:uc001vla.2
UCSC:uc001vlc.1 CTD:64062 GeneCards:GC13M079888 HGNC:HGNC:20327
HPA:HPA040252 neXtProt:NX_Q5T8P6 PharmGKB:PA134982324
HOVERGEN:HBG057372 InParanoid:Q5T8P6 ChiTaRS:RBM26 GenomeRNAi:64062
NextBio:65822 PMAP-CutDB:Q5T8P6 ArrayExpress:Q5T8P6 Bgee:Q5T8P6
CleanEx:HS_RBM26 Genevestigator:Q5T8P6 Uniprot:Q5T8P6
Length = 1007
Score = 141 (54.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 58/234 (24%), Positives = 96/234 (41%)
Query: 25 PDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAA 84
P P +G D P A T + ++ L +D+ D D N +
Sbjct: 382 PPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPSLFTADTYDTD--GYNPEAPS 439
Query: 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRI 144
++ NTS ++ R R N+ I T +D E ++ ++ + S R + I
Sbjct: 440 IT-NTSRPMY-RHRVHAQRPNL---IGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTI 494
Query: 145 IEGDA---IQKNMDPSTKAQNDHMRNIRKPSQKALRT--LFVNNVPLKSNRREALLSHFQ 199
G+ +K + +K Q L + VP + N L HF
Sbjct: 495 GSGEPGVPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFS 554
Query: 200 KFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251
+FG +V++ + N E A +QF+ EEA+ A+ S +AV+ NRFIK++W S
Sbjct: 555 RFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGS 608
Score = 83 (34.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 886 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 930
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 931 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPVTNISAVETEE 971
>UNIPROTKB|F1RP70 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
GeneTree:ENSGT00510000046929 OMA:PREKPPN EMBL:CT971574
EMBL:CT967301 Ensembl:ENSSSCT00000010394 Uniprot:F1RP70
Length = 1007
Score = 141 (54.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 58/234 (24%), Positives = 96/234 (41%)
Query: 25 PDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAA 84
P P +G D P A T + ++ L +D+ D D N +
Sbjct: 382 PPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPSLFTADTYDTD--GYNPEAPS 439
Query: 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRI 144
++ NTS ++ R R N+ I T +D E ++ ++ + S R + I
Sbjct: 440 IT-NTSRPMY-RHRVHAQRPNL---IGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTI 494
Query: 145 IEGDA---IQKNMDPSTKAQNDHMRNIRKPSQKALRT--LFVNNVPLKSNRREALLSHFQ 199
G+ +K + +K Q L + VP + N L HF
Sbjct: 495 GSGEPGVPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFS 554
Query: 200 KFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251
+FG +V++ + N E A +QF+ EEA+ A+ S +AV+ NRFIK++W S
Sbjct: 555 RFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGS 608
Score = 83 (34.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 886 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 930
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 931 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPITNISAVETEE 971
>UNIPROTKB|Q2T9I5 [details] [associations]
symbol:rbm26 "RNA-binding protein 26" species:8355 "Xenopus
laevis" [GO:0010923 "negative regulation of phosphatase activity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 KO:K13192 Gene3D:1.20.1390.10 CTD:64062
HOVERGEN:HBG057372 EMBL:BC043744 EMBL:BC111508
RefSeq:NP_001079468.1 UniGene:Xl.24907 ProteinModelPortal:Q2T9I5
GeneID:379155 KEGG:xla:379155 Xenbase:XB-GENE-960059 Uniprot:Q2T9I5
Length = 1059
Score = 133 (51.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 41/145 (28%), Positives = 69/145 (47%)
Query: 114 LNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMR-NI---R 169
L S D ++ T ++ + + S R + + GD + + P N + R N +
Sbjct: 514 LTSGD-MDLPTPREKNNMRIVVDSESRKRNLGSGDCVLPSKKPWFDKSNFNNRMNPGFQK 572
Query: 170 KPSQKALRT-LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEA 226
KP T L + +P + N L HF KFG +V++ + E A +QF+ EA
Sbjct: 573 KPLFPNENTKLELRRIPPELNNISKLNEHFSKFGTIVNLQVAYKGDPEGALIQFATHGEA 632
Query: 227 EAALKSPDAVMGNRFIKLWWANRDS 251
+ A+ S +AV+ NRFI+++W S
Sbjct: 633 KKAISSTEAVLNNRFIRMYWHREGS 657
Score = 88 (36.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 460 LDNRPTAFRIMPPLPVGFA--DVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQ 517
+D+RP A +I GF D L HF+ +G E+ED ++ D+S +
Sbjct: 937 VDHRPRALKIS-----GFTEGDREYLLPHFAHFG-----EIEDCQI------DDSSLHAI 980
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTWL--MPSSSSNDLGNKEK 562
+ +F TR AE A + G ++G DL+ W +P++SS ++ + ++
Sbjct: 981 I--TFKTRAEAEAAAVHGAQFKGQDLKLAWNKPVPNASSTEVEDADQ 1025
>UNIPROTKB|F1MYG6 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
GeneTree:ENSGT00510000046929 EMBL:DAAA02033656 IPI:IPI01001784
Ensembl:ENSBTAT00000023371 OMA:PREKPPN Uniprot:F1MYG6
Length = 1012
Score = 137 (53.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF +FG +V++ + N E A +QF+ EEA+ A+ S +AV
Sbjct: 539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAV 598
Query: 237 MGNRFIKLWWANRDS 251
+ NRFIK++W S
Sbjct: 599 LNNRFIKVYWHREGS 613
Score = 83 (34.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 891 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 935
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 936 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPITNISAVETEE 976
>ZFIN|ZDB-GENE-110411-31 [details] [associations]
symbol:rbm27 "RNA binding motif protein 27"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 ZFIN:ZDB-GENE-110411-31 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:CU468941 IPI:IPI01024434 Ensembl:ENSDART00000148928
ArrayExpress:F8W2E8 Bgee:F8W2E8 Uniprot:F8W2E8
Length = 1031
Score = 149 (57.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 45/174 (25%), Positives = 74/174 (42%)
Query: 146 EGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVV 205
+G ++K N H K L V +P + N L HF KFG +V
Sbjct: 529 DGPQVKKPWMDKPNFNNQHKPTFPKKHYYVNTKLEVRRIPRELNNITKLNEHFSKFGTIV 588
Query: 206 DIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW-----AN-RDSIPDDGI 257
+I + E A +Q++ +EA A+ S +AV+ NRFI+++W AN ++ P
Sbjct: 589 NIQVVFGGDPEAALIQYTANDEARRAISSTEAVLNNRFIRVYWHREPTANTQEQGPSQST 648
Query: 258 SGVNVSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKG--GNIVPAADVSLPA 309
+ +H + PA + V NK + +T G G+ P + P+
Sbjct: 649 NPGQQHPPTHKVINKQHPAASYVLNKTIPKHHAATGTAGITGSTEPTSPSQEPS 702
Score = 69 (29.3 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 501 GEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNK 560
GE+ E DAS V ++F TR AE A G ++G LQ +W P + S +
Sbjct: 930 GEI-EELREHDASS---VVMTFKTRSDAENAANQGAKFKGRILQISWYKPKTPSVSTEPE 985
Query: 561 EKTS 564
E+ S
Sbjct: 986 EEES 989
>MGI|MGI:1921463 [details] [associations]
symbol:Rbm26 "RNA binding motif protein 26" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1921463 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0010923 eggNOG:NOG280405 KO:K13192 Gene3D:1.20.1390.10
CTD:64062 HOVERGEN:HBG057372 ChiTaRS:RBM26 EMBL:BC011531
EMBL:BC029079 EMBL:BC066051 EMBL:AK049083 EMBL:AK051686
EMBL:AK139077 EMBL:AK172039 IPI:IPI00223561 IPI:IPI00466369
IPI:IPI00828361 IPI:IPI00828462 IPI:IPI00990343 RefSeq:NP_598838.3
UniGene:Mm.474531 ProteinModelPortal:Q6NZN0 SMR:Q6NZN0
PhosphoSite:Q6NZN0 PaxDb:Q6NZN0 PRIDE:Q6NZN0
Ensembl:ENSMUST00000022715 Ensembl:ENSMUST00000172122 GeneID:74213
KEGG:mmu:74213 UCSC:uc007uxk.1 UCSC:uc007uxm.1 UCSC:uc007uxn.1
GeneTree:ENSGT00510000046929 InParanoid:Q6NZN0 OrthoDB:EOG498V06
NextBio:340120 Bgee:Q6NZN0 CleanEx:MM_RBM26 Genevestigator:Q6NZN0
Uniprot:Q6NZN0
Length = 1012
Score = 136 (52.9 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF +FG +V++ + N E A +QF+ EEA+ A+ S +AV
Sbjct: 539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAV 598
Query: 237 MGNRFIKLWW 246
+ NRFIK++W
Sbjct: 599 LNNRFIKVYW 608
Score = 88 (36.0 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ DAS + +
Sbjct: 891 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDASLHAII- 935
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 936 -TFKTRAEAEAAAIHGARFKGQDLKLAWNKPIANMSAVDTEE 976
Score = 38 (18.4 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 102 NRSNVKEKIDATLNSLDYLENETKED--REALPSLQG---SYRRGK-RIIEGDAIQ-KNM 154
NRS + K D DY N + D R+ +G SY R + R + ++ ++
Sbjct: 138 NRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYSRSRSRSWSKERLRDRDR 197
Query: 155 DPS-TKAQN---DHMRNIRKPSQKALRT--LFVNNVPLKS 188
D S T++++ R++ KP RT L N P+ S
Sbjct: 198 DRSRTRSRSRTRSRERDLVKPKYDLDRTDPLENNYTPVSS 237
>UNIPROTKB|F1NM59 [details] [associations]
symbol:Gga.29875 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF00642 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929 OMA:EDCQIFS
EMBL:AADN02028204 IPI:IPI00594359 Ensembl:ENSGALT00000012154
Uniprot:F1NM59
Length = 955
Score = 136 (52.9 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +E ++K N + K +Q L V +P + N L
Sbjct: 482 SRKRSPSSLECPPLKKPWLGKQANNNQNKPGFLKKNQYTNTKLEVRKIPPELNNITQLNE 541
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251
HF KFG +V+I + + E A +Q+ +EA A+ S +AV+ NRFI++ W +R+S
Sbjct: 542 HFSKFGTIVNIQVAFQNDPEAALIQYLTNDEARKAISSTEAVLNNRFIRVHW-HRES 597
Score = 85 (35.0 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 36/141 (25%), Positives = 62/141 (43%)
Query: 454 LMNRYKLDNRPTAFRIMPPLPVGFADVAV--LKEHFSSYGDLASVELEDGEVLEGDNGSD 511
++N +D+RP A + GF + L +HFS +GD+ ++ ED +
Sbjct: 830 MLNHMVVDHRPKALTVG-----GFIEEEKDELLQHFSKFGDIEDLQEEDSPL-------- 876
Query: 512 ASKNCQVRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMPS--SSSNDL----GNKEKTST 565
V ++F +R AE A G ++ LQ +W P S S ++ +E+T T
Sbjct: 877 -----SVVLTFKSRSEAENAANQGSKFKDRRLQISWYKPKVPSVSTEVEEEESKEEETET 931
Query: 566 ---FLKGSSDTDVQKEEKLSS 583
FL D + + E++ S
Sbjct: 932 SDLFLHEDDDDEDEDEDESRS 952
Score = 40 (19.1 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 263 SMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGG 297
++T H + +FP S + V ++ T +K G
Sbjct: 632 AVTMHSNISKTFPTSASHSKMVYSSSNLKTAMKPG 666
>FB|FBgn0002044 [details] [associations]
symbol:swm "second mitotic wave missing" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0007346 "regulation of mitotic cell cycle" evidence=NAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0045879 "negative regulation of smoothened signaling pathway"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50103
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13192 Gene3D:1.20.1390.10 GO:GO:0045879
GeneTree:ENSGT00510000046929 EMBL:AY095056 EMBL:EF601876
RefSeq:NP_609976.1 RefSeq:NP_724201.1 UniGene:Dm.12338 SMR:Q9VIV2
IntAct:Q9VIV2 MINT:MINT-1007472 STRING:Q9VIV2
EnsemblMetazoa:FBtr0081244 EnsemblMetazoa:FBtr0081245 GeneID:35235
KEGG:dme:Dmel_CG10084 UCSC:CG10084-RA CTD:35235 FlyBase:FBgn0002044
InParanoid:Q9VIV2 OMA:HAEANVA OrthoDB:EOG4V41RF GenomeRNAi:35235
NextBio:792519 Uniprot:Q9VIV2
Length = 1062
Score = 141 (54.7 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 43/122 (35%), Positives = 60/122 (49%)
Query: 141 GKRIIEGDAIQKNMDPSTKAQ---NDHMRNIRKPS-QKALRTLFVNNVPLKSNRREALLS 196
GKR E + D TK + N + P+ Q+ +L + VP N L +
Sbjct: 521 GKRRFELEDTVAIADVPTKRKVPINSRLGPRVNPNMQQHNSSLELRKVPRGLNTIAHLNN 580
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDSIPD 254
HF KFG++V+I + E A V FS EA A +S +AV+ NRFIK++W N S D
Sbjct: 581 HFAKFGKIVNIQVSYEGDPEAAIVTFSTHAEANVAYRSTEAVLNNRFIKVFWHNDSSGAD 640
Query: 255 DG 256
G
Sbjct: 641 VG 642
Score = 72 (30.4 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 459 KLDNRPTAFRIMPPLPVGFA--DVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNC 516
++D RP A + GFA + + HF ++G+++ ++ D E+
Sbjct: 919 RVDRRPKAIVV-----TGFAAEEADFVLGHFKNFGEISKHDV-DREIP------------ 960
Query: 517 QVRVSFTTRRSAERAFLSGKSWQGHDLQFTW 547
Q+ +S+ TR +AE+A L GK ++ LQ +W
Sbjct: 961 QLILSYATRLNAEQAVLRGKMYKDKRLQISW 991
Score = 42 (19.8 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 18/73 (24%), Positives = 27/73 (36%)
Query: 248 NRDSIPDDGISGVNVS----MTSHGMTAASFPAHTSVTNKVKDNNLQ---STTLKGGNIV 300
N ++P G +S +T G PA T N +++ +TT GG+
Sbjct: 666 NVPAVPTPNADGAKISNANPLTEAGAGNIGTPA-TEQANTAAPASMRLKLNTTTAGGSAG 724
Query: 301 PAADVSLPAPDHP 313
AA P P
Sbjct: 725 GAAGAGAPGSGRP 737
>RGD|1308297 [details] [associations]
symbol:RGD1308297 "similar to CG10084-PA" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 RGD:1308297
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.20.1390.10
IPI:IPI00948891 PRIDE:D4A9G0 Ensembl:ENSRNOT00000064502
ArrayExpress:D4A9G0 Uniprot:D4A9G0
Length = 1008
Score = 133 (51.9 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF +FG +V++ + N E A +QF+ +EA+ A+ S +AV
Sbjct: 539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYDEAKKAISSTEAV 598
Query: 237 MGNRFIKLWW 246
+ NRFIK++W
Sbjct: 599 LNNRFIKVYW 608
Score = 83 (34.3 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 891 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAII- 935
Query: 520 VSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKE 561
+F TR AE A + G ++G DL+ W P ++ + + +E
Sbjct: 936 -TFKTRAEAEAAAVHGARFKGQDLKLAWNKPVANMSAVETEE 976
Score = 38 (18.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 102 NRSNVKEKIDATLNSLDYLENETKED--REALPSLQG---SYRRGK-RIIEGDAIQ-KNM 154
NRS + K D DY N + D R+ +G SY R + R + ++ ++
Sbjct: 138 NRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYSRSRSRSWSKERLRDRDR 197
Query: 155 DPS-TKAQN---DHMRNIRKPSQKALRT--LFVNNVPLKS 188
D S T++++ R++ KP RT L N P+ S
Sbjct: 198 DRSRTRSRSRTRSRERDLVKPKYDLDRTDPLENNYTPVSS 237
>UNIPROTKB|E1BQE2 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929 EMBL:AADN02042714
EMBL:AADN02042715 EMBL:AADN02042716 EMBL:AADN02042717
IPI:IPI00572212 Ensembl:ENSGALT00000027333 ArrayExpress:E1BQE2
Uniprot:E1BQE2
Length = 964
Score = 143 (55.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF KFG +V++ + E A +QF+ EEA+ A+ S +AV
Sbjct: 540 LELRKVPPELNNISKLNDHFSKFGNLVNLQVAYQGDPEGALIQFATHEEAKKAISSTEAV 599
Query: 237 MGNRFIKLWWANRDSIP 253
+ NRFIK++W S P
Sbjct: 600 LNNRFIKVYWHREGSAP 616
Score = 64 (27.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR 519
+D+RP A I +D L HF+ YG E+ED ++ D+S + +
Sbjct: 897 VDHRPRALEISAFTE---SDREDLLPHFAQYG-----EIEDCQI------DDSSLHAVI- 941
Query: 520 VSFTTRRSAERAFLSGKSWQGHDL 543
+F TR AE A + G ++G +L
Sbjct: 942 -TFKTRAEAEAAAIHGSRFKGQEL 964
>UNIPROTKB|H0Y5U7 [details] [associations]
symbol:SPEN "Msx2-interacting protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL450998
EMBL:AL034555 HGNC:HGNC:17575 ChiTaRS:SPEN PRIDE:H0Y5U7
Ensembl:ENST00000442985 Bgee:H0Y5U7 Uniprot:H0Y5U7
Length = 297
Score = 116 (45.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 125 KEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHM---RNIRKPSQKALRTLF 180
+ED+E AL + +G G +I + + P T+++N+ I + KA RTLF
Sbjct: 126 QEDQEKALTASKGKLFFGMQI----EVTAWIGPETESENEFRPLDERIDEFHPKATRTLF 181
Query: 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIP-LNS--ERAFVQFSKREEAEAALKSPDA-V 236
+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+K D
Sbjct: 182 IGNLE-KTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEY 240
Query: 237 MGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
+GN +KL + S+P DG+S NVS +T H
Sbjct: 241 LGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 276
Score = 63 (27.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTS 90
P SP + S + ++S+ + S+++ +S S+D D P R+ +AAV TS
Sbjct: 6 PTRSPSGSGSRSRSSSSDSISSSSSTSSDSDSSSSSSD-DSPARSVQSAAVPAPTS 60
>UNIPROTKB|G4MT73 [details] [associations]
symbol:MGG_07147 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CM001232 Gene3D:1.20.1390.10 RefSeq:XP_003715345.1
ProteinModelPortal:G4MT73 EnsemblFungi:MGG_07147T0 GeneID:2683269
KEGG:mgr:MGG_07147 Uniprot:G4MT73
Length = 766
Score = 117 (46.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP 233
K+ T+ V N+P ++ E + F +FG +V + + A V++ A AA +SP
Sbjct: 329 KSRSTIVVENIPEENFTEEEVRGFFSQFGTIVSVSMQPYKRLAVVEYDTWASANAAYRSP 388
Query: 234 DAVMGNRFIKLWWANRD 250
+ NRF++++W D
Sbjct: 389 KVIFDNRFVRVFWRKED 405
Score = 74 (31.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 458 YKLDNRPTAFRIMPPLPVGFADV-AVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNC 516
Y LD+RP + + AD L+++ G+ ++++DG G+
Sbjct: 616 YSLDHRPKRVAVSG-VDFSTADKDEALRQYLLGVGEFKEIQVQDG-------GT------ 661
Query: 517 QVRVSFTTRRSAERAFL---SGKSWQGHD--LQFTWLMPSSSSNDLGNKEKTSTFLKGSS 571
VSF+ RR+AE + SGK G + ++ W+ P+S++ N K S +G+
Sbjct: 662 -AHVSFSDRRTAETFYYGLSSGKGIPGIEAPIELAWV-PNSAAETAANSSKPSPGQQGAE 719
Query: 572 DTD 574
D
Sbjct: 720 ARD 722
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 58/219 (26%), Positives = 101/219 (46%)
Query: 31 NNNGPDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNT- 89
N+NG +T+ G +A +++ND + +E +SNN++ S++++N N + N
Sbjct: 33 NSNGSNTNNGNSATNANNDIV--MKDESNSNNNNNNNSNTSNNGTNSNNNSNNNNNNNRD 90
Query: 90 ---SMSVWGRIGSSKNRSNVKEKIDATLN-SLDYLENETKEDREALPSLQGSYRRGKRII 145
S S GR G SK RS +++ D + S D N+ DR + Y R R
Sbjct: 91 NSRSPSPRGRRGDSKERSKSRDRNDRDRDRSRD--RNDRDRDRHDRDRSRDRYDRHDRSR 148
Query: 146 EGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVV 205
E +N + R S A R ++V + K+ R E+L F KFG+V+
Sbjct: 149 E-----RNRSRTRSRSGSRRRKSIDFSLLAERRVYVGRISNKTTR-ESLEDSFLKFGKVL 202
Query: 206 DIYIPLNSERAFVQFSKREEAEAALKSP-DAVM-GNRFI 242
+ + AFV+F + A A++ D+++ G + +
Sbjct: 203 SCDV--KNGYAFVEFDNEKSARDAIEEMHDSIVDGEKIL 239
>UNIPROTKB|F1MB97 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:DAAA02043252 IPI:IPI01003198
Ensembl:ENSBTAT00000055533 Uniprot:F1MB97
Length = 636
Score = 116 (45.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 125 KEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHM---RNIRKPSQKALRTLF 180
+ED+E AL + +G G +I + + P T+++N+ I + KA RTLF
Sbjct: 472 QEDQEKALTASKGKLFFGMQI----EVTAWIGPETESENEFRPLDERIDEFHPKATRTLF 527
Query: 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIP-LNS--ERAFVQFSKREEAEAALKSPDA-V 236
+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+K D
Sbjct: 528 IGNLE-KTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEY 586
Query: 237 MGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
+GN +KL + S+P DG+S NVS +T H
Sbjct: 587 LGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 622
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDS-SNNHHLR-ASDSADNDLPVRNAGTAAVSQNTSMS 92
P SP + S + ++S+ + S S++ L +S S+ +D P R+ +AAV TS
Sbjct: 346 PTRSPSGSGSRSRSSSSDSISSSSSTSSDRDLTDSSSSSSDDSPARSVQSAAVPAPTSQL 405
Query: 93 VWGRIGSSKNRSNVKEKI-DATLNSLDYLENETKE 126
+ + + R + K+ + + S D L+ K+
Sbjct: 406 L-SSLDKDEPRKSFGIKVQNLPVRSTDGLDTSLKD 439
>UNIPROTKB|F1RM18 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00510000046929
CTD:54439 KO:K13193 EMBL:FP236569 RefSeq:XP_003124118.1
Ensembl:ENSSSCT00000015747 GeneID:100526159 KEGG:ssc:100526159
OMA:HWHREGE Uniprot:F1RM18
Length = 631
Score = 134 (52.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +EG +K N + +Q L V +P + N L
Sbjct: 131 SRKRAMSGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNE 190
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
HF KFG +V+I + E A +Q+ EEA A+ S +AV+ NRFI++ W
Sbjct: 191 HFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLW 242
>UNIPROTKB|Q9P2N5 [details] [associations]
symbol:RBM27 "RNA-binding protein 27" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG280405 Gene3D:1.20.1390.10 HOVERGEN:HBG057372
EMBL:AC091959 EMBL:AB037732 EMBL:BC033524 IPI:IPI00292975
RefSeq:NP_061862.1 UniGene:Hs.61441 ProteinModelPortal:Q9P2N5
SMR:Q9P2N5 IntAct:Q9P2N5 STRING:Q9P2N5 PhosphoSite:Q9P2N5
DMDM:124021005 PaxDb:Q9P2N5 PeptideAtlas:Q9P2N5 PRIDE:Q9P2N5
Ensembl:ENST00000265271 GeneID:54439 KEGG:hsa:54439 UCSC:uc003lnz.4
CTD:54439 GeneCards:GC05P145563 H-InvDB:HIX0005281 HGNC:HGNC:29243
HPA:HPA035944 HPA:HPA036422 neXtProt:NX_Q9P2N5 PharmGKB:PA134925458
HOGENOM:HOG000067963 InParanoid:Q9P2N5 KO:K13193 OMA:EDCQIFS
OrthoDB:EOG4FJ88J PhylomeDB:Q9P2N5 ChiTaRS:RBM27 GenomeRNAi:54439
NextBio:56662 PMAP-CutDB:Q9P2N5 Bgee:Q9P2N5 CleanEx:HS_RBM27
Genevestigator:Q9P2N5 Uniprot:Q9P2N5
Length = 1060
Score = 136 (52.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +EG +K N + + +Q L V +P + N L
Sbjct: 560 SRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELNNITKLNE 619
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
HF KFG +V+I + E A +Q+ EEA A+ S +AV+ NRFI++ W
Sbjct: 620 HFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLW 671
Score = 49 (22.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNHHLRASDSADNDLP 76
P T +A H S + TES N NNH +S+S +LP
Sbjct: 237 PSTVTVIAPAHHSENTTESWSNY--YNNHS--SSNSFGRNLP 274
>UNIPROTKB|F1LU10 [details] [associations]
symbol:LOC100365546 "Protein LOC100365546" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2318836 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 IPI:IPI00764432
Ensembl:ENSRNOT00000047339 Uniprot:F1LU10
Length = 3618
Score = 116 (45.9 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 125 KEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHM---RNIRKPSQKALRTLF 180
+ED+E AL + +G G +I + + P T+++N+ I + KA RTLF
Sbjct: 388 QEDQEKALTASKGKLFFGMQI----EVTAWVGPETESENEFRPLDERIDEFHPKATRTLF 443
Query: 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIP-LNS--ERAFVQFSKREEAEAALKSPDA-V 236
+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+K D
Sbjct: 444 IGNLE-KTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEY 502
Query: 237 MGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
+GN +KL + S+P DG+S NVS +T H
Sbjct: 503 LGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 538
Score = 70 (29.7 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 355 RRQLDKLEKQAGGKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAV-ASPRAEMMADK 413
RR+ + +K A SE + + AA A A A ++ + AA A P+ E ++K
Sbjct: 2304 RRKRNVNKKVAAATETRASEAEQPQSESPAAAAAAAAAAAAAAAAAAAEAEPQEEKQSEK 2363
Query: 414 --NKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGP--PFLMNRYKLDNRPTA-FR 468
+ L + PS K A L + S +++ PA P P L +D+ P A F+
Sbjct: 2364 PHSPLRECTSDPS-KTPPAESLSQENSVEEKTPCKTPAPPDLPPLSQPALVDDEPQARFK 2422
Query: 469 I 469
+
Sbjct: 2423 V 2423
Score = 58 (25.5 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSN-NHHLRASDS-ADNDLPVRNAGTAAVSQNTS 90
P SP + S + ++S+ + SS+ + L S S + +D P R+ +AAV TS
Sbjct: 265 PTRSPSGSGSRSRSSSSDSISSSSSSSTDRDLSDSSSTSSDDSPARSVQSAAVPAPTS 322
>UNIPROTKB|F1M815 [details] [associations]
symbol:LOC100365546 "Protein LOC100365546" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2318836 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
IPI:IPI00765993 Ensembl:ENSRNOT00000055793 Uniprot:F1M815
Length = 3641
Score = 116 (45.9 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 125 KEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHM---RNIRKPSQKALRTLF 180
+ED+E AL + +G G +I + + P T+++N+ I + KA RTLF
Sbjct: 388 QEDQEKALTASKGKLFFGMQI----EVTAWVGPETESENEFRPLDERIDEFHPKATRTLF 443
Query: 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIP-LNS--ERAFVQFSKREEAEAALKSPDA-V 236
+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+K D
Sbjct: 444 IGNLE-KTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEY 502
Query: 237 MGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
+GN +KL + S+P DG+S NVS +T H
Sbjct: 503 LGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 538
Score = 70 (29.7 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 355 RRQLDKLEKQAGGKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAV-ASPRAEMMADK 413
RR+ + +K A SE + + AA A A A ++ + AA A P+ E ++K
Sbjct: 2327 RRKRNVNKKVAAATETRASEAEQPQSESPAAAAAAAAAAAAAAAAAAAEAEPQEEKQSEK 2386
Query: 414 --NKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGP--PFLMNRYKLDNRPTA-FR 468
+ L + PS K A L + S +++ PA P P L +D+ P A F+
Sbjct: 2387 PHSPLRECTSDPS-KTPPAESLSQENSVEEKTPCKTPAPPDLPPLSQPALVDDEPQARFK 2445
Query: 469 I 469
+
Sbjct: 2446 V 2446
Score = 58 (25.5 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSN-NHHLRASDS-ADNDLPVRNAGTAAVSQNTS 90
P SP + S + ++S+ + SS+ + L S S + +D P R+ +AAV TS
Sbjct: 265 PTRSPSGSGSRSRSSSSDSISSSSSSSTDRDLSDSSSTSSDDSPARSVQSAAVPAPTS 322
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 131 (51.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 52/221 (23%), Positives = 98/221 (44%)
Query: 46 SSND--ETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTS--MSVWGR--IGS 99
SSND E + E SSN H D + ++N + +QN + V+ +
Sbjct: 634 SSNDLMEANKDVTEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQ 693
Query: 100 SKNRSNVKEKIDATLNSLDYLENETKEDREA-LPSLQGSYRRGKRIIEGDAIQKNMDPST 158
K + + K + ++E TKE A + ++ G+ +I+G IQ +
Sbjct: 694 VKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGT------VIDGHKIQLKLSHRQ 747
Query: 159 KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER--- 215
+Q+ N + S K + V N+P ++ R++ + F FG++ + +P ++
Sbjct: 748 ASQSG---NTKTKSNKKSGKIIVKNLPFEATRKD-VFELFNSFGQLKSVRVPKKFDKSAR 803
Query: 216 --AFVQFSKREEAEAALKSPDAV--MGNRFIKLWWANRDSI 252
AFV+F +EAE A+ V +G R + + +A D++
Sbjct: 804 GFAFVEFLLPKEAENAMDQLHGVHLLGRRLV-MQYAEEDAV 843
>UNIPROTKB|E1BCT9 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.20.1390.10
GeneTree:ENSGT00510000046929 CTD:54439 KO:K13193 OMA:EDCQIFS
EMBL:DAAA02020554 IPI:IPI00717395 RefSeq:NP_001180101.1
UniGene:Bt.20630 PRIDE:E1BCT9 Ensembl:ENSBTAT00000015463
GeneID:516521 KEGG:bta:516521 NextBio:20872246 Uniprot:E1BCT9
Length = 1058
Score = 134 (52.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +EG +K N + +Q L V +P + N L
Sbjct: 558 SRKRAMSGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNE 617
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
HF KFG +V+I + E A +Q+ EEA A+ S +AV+ NRFI++ W
Sbjct: 618 HFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLW 669
Score = 45 (20.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 36/172 (20%), Positives = 59/172 (34%)
Query: 308 PAPDHPTVITNSXXXXXXXXXXXDNXXXXXXXXXXXXXXXXXXXNDFRRQLDK-LEKQAG 366
P P HP +I +S + D R++ + LEKQ
Sbjct: 778 PTPGHPKMIYSSTNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIE 837
Query: 367 GKSDVVSE-KAAKRLKVGIAADVAKATARSSDSTAAVASPRAEMMADKNKLVDIVLSPSQ 425
+ ++S+ + K +K A++ K T + + D+ K V +PS
Sbjct: 838 CQKMLISKLEKNKNMKPEERANIMK--------TLKELGEKISQLKDELKTSSAVSTPS- 888
Query: 426 KVNTAMVLQ-ESTSFKQQIRPLAPAGPPFLMNRYKLDNRPTAFRIMPPLPVG 476
KV T Q E + + +G R KL+ + LPVG
Sbjct: 889 KVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLNQLQVEAARLGILPVG 940
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 237 PSTVTVIAPAHHSENTTESWSNY--YNNH 263
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SERA----FVQFSKREEAEA 228
+L +FV +P S +EAL +HF +FG + D Y+ L+ ++R+ FVQF +E +
Sbjct: 2 SLNKIFVTRLPW-SVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQN 60
Query: 229 ALKSPDAVMGNRFI 242
A+ S + + G + +
Sbjct: 61 AINSDNEINGRKLV 74
>WB|WBGene00015143 [details] [associations]
symbol:B0336.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0071688 "striated muscle myosin thick filament
assembly" evidence=IMP] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0003676
EMBL:FO080138 eggNOG:NOG280405 KO:K13192
GeneTree:ENSGT00510000046929 OMA:SSRRRCK RefSeq:NP_498234.1
ProteinModelPortal:Q10954 SMR:Q10954 IntAct:Q10954 STRING:Q10954
PaxDb:Q10954 EnsemblMetazoa:B0336.3 GeneID:175800
KEGG:cel:CELE_B0336.3 UCSC:B0336.3 CTD:175800 WormBase:B0336.3
HOGENOM:HOG000018774 InParanoid:Q10954 NextBio:889730
Uniprot:Q10954
Length = 719
Score = 127 (49.8 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 46/91 (50%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE--RAFVQFSKREEAEAALKSPDA 235
TL V +P + N L HF FG V +I + N E A V ++ + +A A KSP
Sbjct: 367 TLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTP 426
Query: 236 VMGNRFIKLWWANRDSIPDDGISGVNVSMTS 266
V+ NRFIK++W N + +G S TS
Sbjct: 427 VLNNRFIKVFWHNPGGEGSENATGKPSSPTS 457
>UNIPROTKB|F1LWJ2 [details] [associations]
symbol:F1LWJ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00510000046929
IPI:IPI00778163 Ensembl:ENSRNOT00000060199 ArrayExpress:F1LWJ2
Uniprot:F1LWJ2
Length = 985
Score = 132 (51.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +EG +K N + +Q L V +P + N L
Sbjct: 485 SRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNE 544
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
HF KFG +V+I + E A +Q+ EEA A+ S +AV+ NRFI++ W
Sbjct: 545 HFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLW 596
Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 217 PSTVTVIAPAHHSENTTESWSNY--YNNH 243
>UNIPROTKB|F1M1R4 [details] [associations]
symbol:F1M1R4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00510000046929
IPI:IPI00360261 Ensembl:ENSRNOT00000036613 ArrayExpress:F1M1R4
Uniprot:F1M1R4
Length = 1040
Score = 132 (51.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 137 SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLS 196
S +R +EG +K N + +Q L V +P + N L
Sbjct: 540 SRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNE 599
Query: 197 HFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWW 246
HF KFG +V+I + E A +Q+ EEA A+ S +AV+ NRFI++ W
Sbjct: 600 HFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLW 651
Score = 42 (19.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 217 PSTVTVIAPAHHSENTTESWSNY--YNNH 243
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 47/153 (30%), Positives = 73/153 (47%)
Query: 119 YLENETKEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA-QNDHMRNIRKPSQKAL 176
Y++ E K E A+ +QG + I+G I +M S A ND + +
Sbjct: 213 YVDFENKSYAEKAIQEMQG------KEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
TLF+ N+ ++R +A+ F K GEVV + IP + E +VQFS E+A+ AL
Sbjct: 267 DTLFLGNLSFNADR-DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325
Query: 231 KSPDAVMG----NRFIKLWWANRDSIPDDGISG 259
DA+ G NR ++L +++ D G G
Sbjct: 326 ---DALQGEYIDNRPVRLDFSSPRPNNDGGRGG 355
>UNIPROTKB|E2QV41 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.20.1390.10 CTD:54439 KO:K13193 RefSeq:XP_544327.2
Ensembl:ENSCAFT00000010424 GeneID:487199 KEGG:cfa:487199
NextBio:20860827 Uniprot:E2QV41
Length = 1060
Score = 131 (51.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 168 IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREE 225
+RK +Q L V +P + N L HF KFG +V+I + E A +Q+ EE
Sbjct: 592 LRK-NQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEE 650
Query: 226 AEAALKSPDAVMGNRFIKLWW 246
A A+ S +AV+ NRFI++ W
Sbjct: 651 ARKAISSTEAVLNNRFIRVLW 671
Score = 42 (19.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 237 PSTVTVIAPAHHSENTTESWSNY--YNNH 263
>UNIPROTKB|J9NT04 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:AAEX03001429 EMBL:AAEX03001427 EMBL:AAEX03001428
Ensembl:ENSCAFT00000049077 Uniprot:J9NT04
Length = 1061
Score = 131 (51.2 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 168 IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREE 225
+RK +Q L V +P + N L HF KFG +V+I + E A +Q+ EE
Sbjct: 593 LRK-NQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEE 651
Query: 226 AEAALKSPDAVMGNRFIKLWW 246
A A+ S +AV+ NRFI++ W
Sbjct: 652 ARKAISSTEAVLNNRFIRVLW 672
Score = 42 (19.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 238 PSTVTVIAPAHHSENTTESWSNY--YNNH 264
>MGI|MGI:2147194 [details] [associations]
symbol:Rbm27 "RNA binding motif protein 27" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 MGI:MGI:2147194
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG280405 Gene3D:1.20.1390.10 HOVERGEN:HBG057372
GeneTree:ENSGT00510000046929 CTD:54439 HOGENOM:HOG000067963
KO:K13193 OMA:EDCQIFS OrthoDB:EOG4FJ88J EMBL:AY461716 EMBL:AC125110
EMBL:AK129330 EMBL:AK042613 EMBL:AK087759 EMBL:BC054080
IPI:IPI00454079 IPI:IPI00515687 IPI:IPI00828892 RefSeq:NP_766214.2
UniGene:Mm.329400 ProteinModelPortal:Q5SFM8 STRING:Q5SFM8
PhosphoSite:Q5SFM8 PaxDb:Q5SFM8 PRIDE:Q5SFM8
Ensembl:ENSMUST00000046972 Ensembl:ENSMUST00000091920 GeneID:225432
KEGG:mmu:225432 UCSC:uc008etr.2 UCSC:uc008ets.1 UCSC:uc008ett.1
InParanoid:Q5SFM8 NextBio:377661 Bgee:Q5SFM8 CleanEx:MM_RBM27
Genevestigator:Q5SFM8 Uniprot:Q5SFM8
Length = 1060
Score = 129 (50.5 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L V +P + N L HF KFG +V+I + E A +Q+ EEA A+ S +AV
Sbjct: 602 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAV 661
Query: 237 MGNRFIKLWW 246
+ NRFI++ W
Sbjct: 662 LNNRFIRVLW 671
Score = 42 (19.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 35 PDTSPGLAALHSSNDETESLLNEDSSNNH 63
P T +A H S + TES N NNH
Sbjct: 237 PSTVTVIAPAHHSENTTESWSNY--YNNH 263
>UNIPROTKB|Q6BLU8 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284592
"Debaryomyces hansenii CBS767" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 EMBL:CR382138 GenomeReviews:CR382138_GR
eggNOG:NOG288665 HOGENOM:HOG000172735 OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 RefSeq:XP_460823.2
ProteinModelPortal:Q6BLU8 STRING:Q6BLU8 GeneID:2904337
KEGG:dha:DEHA2F10560g OMA:NIRWANE Uniprot:Q6BLU8
Length = 339
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 158 TKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAF 217
T D M + S K+ RTL++ + + L HFQ+FG + I + + AF
Sbjct: 139 TSDYKDDMNGVGSFS-KSNRTLYIGGLHMDDKMENTLTKHFQEFGSIDKIRVLHSKACAF 197
Query: 218 VQFSKREEAEAALKSPD--AVMGNRFIKLWWANRDSIPD 254
V F EA+ A ++ ++ GN + + WAN D P+
Sbjct: 198 VTFRTENEAQFAKEAMQNQSLDGNEVLNIRWANEDPNPE 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.126 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 634 572 0.00080 120 3 11 23 0.49 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 613 (65 KB)
Total size of DFA: 287 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.55u 0.16s 58.71t Elapsed: 00:00:03
Total cpu time: 58.55u 0.17s 58.72t Elapsed: 00:00:03
Start: Sat May 11 10:07:42 2013 End: Sat May 11 10:07:45 2013