BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048615
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 42 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 100
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 101 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAE-AALKS 232
K + TL+V + + L +HF +FGE+ I + + AF+QF+ R+ AE AA KS
Sbjct: 10 KTITTLYVGGLGDTITETD-LRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68
Query: 233 PDAVMGN-RFIKLWWA 247
+ ++ N R + + W
Sbjct: 69 FNKLIVNGRRLNVKWG 84
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAE 227
+ + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F + +AE
Sbjct: 68 EGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 126
Query: 228 AALKSPD-AVMGNRFIKLWWANRDSIPD 254
A+ + D AV+ R +++ A PD
Sbjct: 127 DAMDAMDGAVLDGRELRVQMARYGRPPD 154
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKR- 223
P + TL V+N+ +++ ++L F+K+G V D+YIP AFV+F R
Sbjct: 8 PDVDGMITLKVDNLTYRTSP-DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66
Query: 224 --EEAEAAL 230
++AEAA+
Sbjct: 67 DAQDAEAAM 75
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
R L+V + + + + L + F FG++ DI IPL+ E AFV+F E+A AA+
Sbjct: 13 RVLYVGGLAEEVDDK-VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71
>pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 216 AFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDSIPDDGIS 258
AFVQF+ +E AE ALK +G+R+I+++ ++R + G S
Sbjct: 60 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTSGPS 102
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIP-----LNSER--AFVQFSKR 223
P ++ + V N+P ++N+RE + F FGE+ + +P + R FV F +
Sbjct: 10 PKKQTTSKILVRNIPFQANQRE-IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 68
Query: 224 EEAEA---ALKSPDAVMGNRFIKLWWANRDSIPDDG 256
++A+ AL + G R + L WA+ + G
Sbjct: 69 QDAKKAFNALCHSTHLYGRRLV-LEWADSEVTVQSG 103
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
R L+V + + + + L + F FG++ DI IPL+ E AFV+F E+A AA+
Sbjct: 64 RVLYVGGLAEEVDDK-VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
R L+V + + + + L + F FG++ DI IPL+ E AFV+F E+A AA+
Sbjct: 3 RVLYVGGLAEEVDDK-VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 61
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
R L+V + + + + L + F FG++ DI IPL+ E AFV+F E+A AA+
Sbjct: 8 RVLYVGGLAEEVDDK-VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
R L+V + + + + L + F FG++ DI IPL+ E AFV+F E+A AA+
Sbjct: 6 RVLYVGGLAEEVDDK-VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 219 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 267
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 219 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 267
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 218 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 266
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 217 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 265
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 217 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 265
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 262 VSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAADVSLPAP 310
V + SH T PA +V N V N+LQ+ + ++PA + L +P
Sbjct: 218 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 266
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 170 KPSQKALR--TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERA------FVQFS 221
+PS ++R L+V+ +P K+ ++ + F ++G ++ I L+ F++F
Sbjct: 82 RPSSASIRDANLYVSGLP-KTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 140
Query: 222 KREEAEAALK 231
KR EAE A+K
Sbjct: 141 KRIEAEEAIK 150
>pdb|2XNR|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALK 231
LF+ N+PLK+ +E L F +G ++ I I + F+QF + A++
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIE 75
>pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
Length = 282
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVS 63
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 64 SATNALRSMQGFPFYDKPMRIQYAKTDS 91
>pdb|2XNQ|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALK 231
LF+ N+PLK+ +E L F +G ++ I I + F+QF + A++
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIE 75
>pdb|2L41|A Chain A, Nab3 Rrm - Ucuu Complex
Length = 77
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALK 231
LF+ N+PLK+ +E L F +G ++ I I + F+QF + A++
Sbjct: 5 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIE 55
>pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 207 IYIPLNSE-----RAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDSI 252
I +P++ E AFVQF+ +E AE AL +G+R+I+++ ++++ +
Sbjct: 73 ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 123
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALK 231
LF+ N+PLK+ +E L F +G ++ I I + F+QF + A++
Sbjct: 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIE 63
>pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVS 63
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 64 SATNALRSMQGFPFYDKPMRIQYAKTDS 91
>pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 178 TLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKREEAEAALK 231
T+++NN+ K + +++L + F +FG+++DI + + + +AFV F + A AL+
Sbjct: 10 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69
Query: 232 SPDAV-MGNRFIKLWWANRDS 251
S ++ +++ +A DS
Sbjct: 70 SMQGFPFYDKPMRIQYAKTDS 90
>pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 4 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 63
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 64 SATNALRSMQGFPFYDKPMRIQYAKTDS 91
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 170 KPSQKALR--TLFVNNVPLKSNRREALLSHFQKFGEV------VDIYIPLNSERAFVQFS 221
+PS + ++ L+++ +P ++ ++ + F +FG + VD L+ AF++F
Sbjct: 80 RPSSEVIKDANLYISGLP-RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 138
Query: 222 KREEAEAALKS 232
KR EAE A+ S
Sbjct: 139 KRSEAEEAITS 149
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 170 KPSQKALR--TLFVNNVPLKSNRREALLSHFQKFGEV------VDIYIPLNSERAFVQFS 221
+PS + ++ L+++ +P ++ ++ + F +FG + VD L+ AF++F
Sbjct: 80 RPSSEVIKDANLYISGLP-RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 138
Query: 222 KREEAEAALKS 232
KR EAE A+ S
Sbjct: 139 KRSEAEEAITS 149
>pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 1 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 60
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 61 SATNALRSMQGFPFYDKPMRIQYAKTDS 88
>pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 62
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 63 SATNALRSMQGFPFYDKPMRIQYAKTDS 90
>pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 62
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 63 SATNALRSMQGFPFYDKPMRIQYAKTDS 90
>pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 62
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 63 SATNALRSMQGFPFYDKPMRIQYAKTDS 90
>pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 4 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 63
Query: 225 EAEAALKSPDAV-MGNRFIKLWWANRDS 251
A AL+S ++ +++ +A DS
Sbjct: 64 SATNALRSMQGFPFYDKPMRIQYAKTDS 91
>pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 178 TLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKREEAEAALK 231
T+++NN+ K + +++L + F +FG+++DI + + + +AFV F + A AL+
Sbjct: 6 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 65
Query: 232 SPDAV-MGNRFIKLWWANRDS 251
S ++ +++ +A DS
Sbjct: 66 SMQGFPFYDKPMRIQYAKTDS 86
>pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 178 TLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKREEAEAALK 231
T+++NN+ K + +++L + F +FG+++DI + + + +AFV F + A AL+
Sbjct: 7 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 66
Query: 232 SPDAV-MGNRFIKLWWANRDS 251
S ++ +++ +A DS
Sbjct: 67 SMQGFPFYDKPMRIQYAKTDS 87
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 170 KPSQKALR--TLFVNNVPLKSNRREALLSHFQKFGEV------VDIYIPLNSERAFVQFS 221
+PS ++R L+V+ +P K+ ++ L F ++G + VD ++ F++F
Sbjct: 80 RPSSASIRDANLYVSGLP-KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 138
Query: 222 KREEAEAALK 231
KR EAE A+K
Sbjct: 139 KRIEAEEAIK 148
>pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
Length = 90
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 178 TLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKREEAEAALK 231
T+++NN+ K + +++L + F +FG+++DI + + + +AFV F + A AL+
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 232 SPDAV-MGNRFIKLWWANRDS 251
S ++ +++ +A DS
Sbjct: 65 SMQGFPFYDKPMRIQYAKTDS 85
>pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 169 RKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVD-IYIPLN-----SERAFVQFSK 222
R P + +++ +P ++ + ++ F+K V D IYI + FV+F
Sbjct: 19 RSPHEAGF-CVYLKGLPFEAENKH-VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 76
Query: 223 REEAEAALKSPDAVMGNRFIKL 244
+ +AAL MGNRFI++
Sbjct: 77 EADYKAALCRHKQYMGNRFIQV 98
>pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 1 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVS 60
Query: 225 EAEAALKS 232
A AL+S
Sbjct: 61 SATNALRS 68
>pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVS 62
Query: 225 EAEAALKS 232
A AL+S
Sbjct: 63 SATNALRS 70
>pdb|3CUL|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
pdb|3CUL|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
pdb|3CUN|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
pdb|3CUN|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
pdb|3EGZ|A Chain A, Crystal Structure Of An In Vitro Evolved Tetracycline
Aptamer And Artificial Riboswitch
Length = 98
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNR---REALLSHFQKFGEVVDIYIPLNSE---RAFVQFSKRE 224
P + T+++NN+ K + +++L + F +FG+++DI + + + +AFV F +
Sbjct: 4 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVS 63
Query: 225 EAEAALKS 232
A AL+S
Sbjct: 64 SATNALRS 71
>pdb|1GH0|B Chain B, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|D Chain D, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|F Chain F, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|H Chain H, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|J Chain J, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|L Chain L, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|N Chain N, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|P Chain P, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|R Chain R, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|T Chain T, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|V Chain V, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|X Chain X, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
Length = 172
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 388 VAKATARSSDSTAAVASPRAEMMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLA 447
V++A R + A ++M+A+ NK +D+V + +T + + F +Q + +A
Sbjct: 9 VSQADTRGEMLSTAQIDALSQMVAESNKRLDVVNRITSNASTIVSNAARSLFAEQPQLIA 68
Query: 448 PAGPPFLMNR 457
P G + R
Sbjct: 69 PGGXAYTSRR 78
>pdb|2UUM|B Chain B, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|D Chain D, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|F Chain F, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|H Chain H, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|J Chain J, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|L Chain L, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|N Chain N, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|P Chain P, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|R Chain R, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|T Chain T, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|V Chain V, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 388 VAKATARSSDSTAAVASPRAEMMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLA 447
V++A R + A ++M+A+ NK +D+V + +T + + F +Q + +A
Sbjct: 9 VSQADTRGEMLSTAQIDALSQMVAESNKRLDVVNRITSNASTIVSNAARSLFAEQPQLIA 68
Query: 448 PAGPPFLMNR 457
P G + R
Sbjct: 69 PGGNAYTSTR 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,323,407
Number of Sequences: 62578
Number of extensions: 601051
Number of successful extensions: 1276
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 59
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)