BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048615
(634 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVX1|C3H41_ARATH Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis
thaliana GN=At3g27700 PE=1 SV=1
Length = 908
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/552 (46%), Positives = 340/552 (61%), Gaps = 43/552 (7%)
Query: 3 DGMGLNGAYSDSAAAGGADLYDPDQPLWNNNGPDTSPGLAALHSSN-DETESLLNEDSSN 61
DG+G AY +AGG D YDPDQPLWNN+ +TS ++ L+S DE + L D SN
Sbjct: 287 DGLGYGDAY---PSAGGTDFYDPDQPLWNNSTGETSGAISTLNSHGVDENVAPL--DDSN 341
Query: 62 NHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLE 121
D+A+N +R+ S++TS SVWGR+ S +++N KEK DA LNS E
Sbjct: 342 Q------DAAENGCGIRD------SRSTSQSVWGRMKGSNSQANSKEKADAVLNSSAVPE 389
Query: 122 NETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFV 181
++ KE S R GK+ G+++ K +D S+ ND M N RKP+QKA+RTLFV
Sbjct: 390 DQLKE------VSVNSSRHGKQNHVGESVAKVVD-SSNISNDMMNNTRKPTQKAMRTLFV 442
Query: 182 NNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRF 241
N VP +SNRR+ +L+HFQKFG+V+DI+IP+NSERAFVQFSKREEAE+AL++PDAVMGNRF
Sbjct: 443 NYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDAVMGNRF 502
Query: 242 IKLWWANRDSIPDDGIS-GVNVSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIV 300
IKLWWANRDSIPD+G+S G SM MTA+ + K N++ S
Sbjct: 503 IKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHVSSIAKVPTFQT 562
Query: 301 PAADVSLPAPDHPTVITNSPKPPPPLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDK 360
A S P V T+ PK P QKK D LE+LKE LRKKQE+L+QKRN++R++L
Sbjct: 563 GGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLAT 622
Query: 361 LEKQAG-GKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAVASPRAEMMADKNKLVDI 419
LEKQ K + E AKR+K+ A SDS AA+ASP+ E DK +
Sbjct: 623 LEKQGTVVKREEADEPDAKRVKLDTA----------SDSGAAIASPKTESSTDKKVPILK 672
Query: 420 VLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYKLDNRPTAFRIMPPLPVGFAD 479
LS + K++T +S +FKQ+ + ++NRYKLDNR T +++PPLP G AD
Sbjct: 673 PLS-TAKLSTETPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIKVVPPLPTGLAD 731
Query: 480 VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVR---VSFTTRRSAERAFLSGK 536
VAV+KEHFSSYG+++ VELED + D+G D + R V+F R +AE+AF + K
Sbjct: 732 VAVVKEHFSSYGEVSKVELEDNASI--DSGKDHETQNESRAACVTFVKRSAAEKAFANAK 789
Query: 537 SWQGHDLQFTWL 548
WQ H LQ W+
Sbjct: 790 CWQEHTLQLVWV 801
>sp|Q0JDM0|C3H27_ORYSJ Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa
subsp. japonica GN=Os04g0394300 PE=2 SV=2
Length = 903
Score = 335 bits (859), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 246/575 (42%), Positives = 323/575 (56%), Gaps = 48/575 (8%)
Query: 2 DDGMGLNGAYSDSAAAGGADLYDPDQPLWNNNGPDTSPGLAALHSSNDETESLLNEDSSN 61
+D + LNG + + A AD+YDPDQPLWNN PD S G A T+ + N +S
Sbjct: 311 NDVLKLNG--TTALAVSDADVYDPDQPLWNNEHPDASAGFA-------HTDGVWNAESLG 361
Query: 62 NHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLE 121
+ A + + L A SQN+ SVWGRI S K + A S
Sbjct: 362 --YEAAREQGNQVL------AADSSQNSKSSVWGRIASKK----LGHGKTANATSTSATG 409
Query: 122 NETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLF 180
N+ E E PS + A N +++ D R + S KA RTL+
Sbjct: 410 NKRNESYDEMAPSTV-------HVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLY 462
Query: 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNR 240
VN +PL+SNR EALLSHFQKFG+V+DIYIP NSE+AFVQFSKREEAEAALK+PDAVMGNR
Sbjct: 463 VNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNR 522
Query: 241 FIKLWWANRDSIPDDGISGVNVSMTSHGMTAA---SFPAHTSVTNKVKDNNLQSTTLKGG 297
FIKLWWANRD IPD+ + G + +SH M+AA S P S +N+ K+ NLQS T +
Sbjct: 523 FIKLWWANRDRIPDE-VEGRIPAKSSH-MSAALANSVP-QPSSSNRGKE-NLQSATPRAS 578
Query: 298 NIVPAADVSLPAPDHPTVITNSPKPPPPLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQ 357
+ +A+ S P H + NS K PP K+ +L EELRKKQE+L QKR++FRRQ
Sbjct: 579 SGS-SAEASGPGTGHKMLPANSVKSLPPDTKR-QESLELLEELRKKQEILAQKRDEFRRQ 636
Query: 358 LDKLEKQAG-GKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAVASPRAEMMADKNKL 416
L+KL KQ G S +E K + + DV + T S +T PR +N+
Sbjct: 637 LEKLAKQKGLANSAKQAEAGGKEV---ASNDVHRVTDSKSMNT-GTEGPRDAAGTLQNRT 692
Query: 417 VDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYKLDNRPTAFRIMPPLPVG 476
+ S S K + + + + KQ L P+ NR+KLDNR T+FRI+PPLP
Sbjct: 693 SGELASSSHKSSATSAQKPAVATKQTSPLLVPS-----QNRFKLDNRTTSFRILPPLPPE 747
Query: 477 FADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGK 536
AD +VLK+HF S+G+L+SV LED E D S +C V++TTR+SAE+AF+ GK
Sbjct: 748 IADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGK 807
Query: 537 SWQGHDLQFTWLMPSSSSNDLGNKEKTSTFLKGSS 571
S +GH L+F WL S S + +KTS + SS
Sbjct: 808 SCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASS 842
>sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2
Length = 1012
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF +FG +V++ + N E A +QF+ EEA+ A+ S +AV
Sbjct: 539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAV 598
Query: 237 MGNRFIKLWW 246
+ NRFIK++W
Sbjct: 599 LNNRFIKVYW 608
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 191 REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRF----IKLWW 246
RE LL HF ++GE+ D I S A + F R EAEAA A+ G RF +KL W
Sbjct: 908 REDLLPHFAQYGEIEDCQIDDASLHAIITFKTRAEAEAA-----AIHGARFKGQDLKLAW 962
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 20/93 (21%)
Query: 460 LDNRPTAFRIMPPLPVGF--ADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQ 517
+D+RP A I F +D L HF+ YG++ +++D +
Sbjct: 891 VDHRPRALEIS-----AFTESDREDLLPHFAQYGEIEDCQIDDASL-------------H 932
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMP 550
++F TR AE A + G ++G DL+ W P
Sbjct: 933 AIITFKTRAEAEAAAIHGARFKGQDLKLAWNKP 965
>sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3
Length = 1007
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--ERAFVQFSKREEAEAALKSPDAV 236
L + VP + N L HF +FG +V++ + N E A +QF+ EEA+ A+ S +AV
Sbjct: 534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAV 593
Query: 237 MGNRFIKLWW 246
+ NRFIK++W
Sbjct: 594 LNNRFIKVYW 603
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 191 REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRF----IKLWW 246
RE LL HF ++GE+ D I +S A + F R EAEAA AV G RF +KL W
Sbjct: 903 REDLLPHFAQYGEIEDCQIDDSSLHAVITFKTRAEAEAA-----AVHGARFKGQDLKLAW 957
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 20/93 (21%)
Query: 460 LDNRPTAFRIMPPLPVGF--ADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQ 517
+D+RP A I F +D L HF+ YG++ +++D +
Sbjct: 886 VDHRPRALEIS-----AFTESDREDLLPHFAQYGEIEDCQIDDSSL-------------H 927
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMP 550
++F TR AE A + G ++G DL+ W P
Sbjct: 928 AVITFKTRAEAEAAAVHGARFKGQDLKLAWNKP 960
>sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=2 SV=3
Length = 1060
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDAV 236
L V +P + N L HF KFG +V+I + + E A +Q+ EEA A+ S +AV
Sbjct: 602 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAV 661
Query: 237 MGNRFIKLWW 246
+ NRFI++ W
Sbjct: 662 LNNRFIRVLW 671
>sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2
Length = 1060
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDAV 236
L V +P + N L HF KFG +V+I + + E A +Q+ EEA A+ S +AV
Sbjct: 602 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAV 661
Query: 237 MGNRFIKLWW 246
+ NRFI++ W
Sbjct: 662 LNNRFIRVLW 671
>sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2
Length = 1059
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDAV 236
L + +P + N L HF KFG +V++ + + E A +QF+ EA+ A+ S +AV
Sbjct: 583 LELRRIPPELNNISKLNEHFSKFGTIVNLQVAYKGDPEGALIQFATHGEAKKAISSTEAV 642
Query: 237 MGNRFIKLWW 246
+ NRFI+++W
Sbjct: 643 LNNRFIRMYW 652
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 191 REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRF----IKLWW 246
RE LL HF FGE+ D I +S A + F R EAEAA AV G +F +KL W
Sbjct: 954 REYLLPHFAHFGEIEDCQIDDSSLHAIITFKTRAEAEAA-----AVHGAQFKGQDLKLAW 1008
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 460 LDNRPTAFRIMPPLPVGF--ADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQ 517
+D+RP A +I GF D L HF+ +G++ +++D +
Sbjct: 937 VDHRPRALKIS-----GFTEGDREYLLPHFAHFGEIEDCQIDDSSL-------------H 978
Query: 518 VRVSFTTRRSAERAFLSGKSWQGHDLQFTW--LMPSSSSNDL 557
++F TR AE A + G ++G DL+ W +P++SS ++
Sbjct: 979 AIITFKTRAEAEAAAVHGAQFKGQDLKLAWNKPVPNASSTEV 1020
>sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1
Length = 589
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAAL 230
P+ AL V N+P + E + S F KFG + + + ++F+ E A A
Sbjct: 239 PTSTALE---VRNIPEEHFNEENIRSFFSKFGVLEKVELNPTHHSCVLEFTSHEAANNAW 295
Query: 231 KSPDAVMGNRFIKLWWANRDSIPDDGISGVNVSMTSH 267
SP+ + NRFIK++W N P G SH
Sbjct: 296 SSPEPIFNNRFIKIFWYN----PSKGFHNRPKKFASH 328
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAAL-KSPDAV 236
T+FV + + E L F +FGEVV + IP FVQFS R A+ A+ K A+
Sbjct: 296 TIFVGGLDSEVTDEE-LRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAI 354
Query: 237 MGNRFIKLWW----ANRDSIPDDG 256
+G + ++L W AN+ D G
Sbjct: 355 IGKQAVRLSWGRSPANKQMRTDSG 378
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-V 236
T+FV + E L+ F FGEVV + IP+ FVQF+ R+ AE A+ + + V
Sbjct: 328 TIFVGGLDADVTE-EDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTV 386
Query: 237 MGNRFIKLWWA 247
+G ++L W
Sbjct: 387 IGKNTVRLSWG 397
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)
Query: 119 YLENETKEDRE-ALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA-QNDHMRNIRKPSQKAL 176
Y++ E K E A+ +QG + I+G I +M S A ND + +
Sbjct: 213 YVDFENKSYAEKAIQEMQG------KEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAAL 230
TLF+ N+ ++R +A+ F K GEVV + IP + E +VQFS E+A+ AL
Sbjct: 267 DTLFLGNLSFNADR-DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325
Query: 231 KSPDAVMG----NRFIKL 244
DA+ G NR ++L
Sbjct: 326 ---DALQGEYIDNRPVRL 340
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 178 TLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKS-PDA 235
T+FV L SN E L FQ FG +++I IP FVQ+S++ AE A+ + A
Sbjct: 298 TVFVGG--LASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 236 VMGNRFIKLWWANRDSIPDDGIS 258
++G I+L W + +++P +S
Sbjct: 356 LVGTSHIRLAWGH-NTLPVSALS 377
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 192 EALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247
E L F +FGEVV + IP+ FVQF+ R+ AE A++S + V+G ++L W
Sbjct: 335 EDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
>sp|Q6BLU8|CWC2_DEBHA Pre-mRNA-splicing factor CWC2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC2 PE=3 SV=2
Length = 339
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP 233
K+ RTL++ + + L HFQ+FG + I + + AFV F EA+ A ++
Sbjct: 154 KSNRTLYIGGLHMDDKMENTLTKHFQEFGSIDKIRVLHSKACAFVTFRTENEAQFAKEAM 213
Query: 234 --DAVMGNRFIKLWWANRDSIPD 254
++ GN + + WAN D P+
Sbjct: 214 QNQSLDGNEVLNIRWANEDPNPE 236
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-V 236
T+FV + K+ + L S F+ FG ++++ IP FV+F KR +AEA+++ +
Sbjct: 361 TVFVGGLVPKTTEFQ-LRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFI 419
Query: 237 MGNRFIKLWW---ANRDSIPDDGISGVNVSMTSHGMTAASFPAHTSVTN 282
+G I+L W ++ ++ + I G + M+S+G+ A S A +SV N
Sbjct: 420 VGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRAPS--AASSVDN 466
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 126 EDREALPSLQGSYRRGKRIIEGDAIQK---NMDPSTKAQNDHMRNIRKPSQKALRTLFVN 182
E A+ + G Y + + G A K M P++ P+ T+FV
Sbjct: 227 EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNT---TIFVG 283
Query: 183 NVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV-MGNRF 241
V +S + L S F +FGE+V + IP FVQ++ R AE AL + +G +
Sbjct: 284 AVD-QSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 242 IKLWWA----NRDSIPD 254
I+L W N+ + PD
Sbjct: 343 IRLSWGRSPSNKQTQPD 359
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV- 236
T+FV + K E L FQ FGE+V + IP FVQF R+ AE A+
Sbjct: 304 TVFVGGLS-KFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 237 MGNRFIKLWWA 247
+GN I+L W
Sbjct: 363 LGNSRIRLSWG 373
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 16/106 (15%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYI-PLNS--ERAFVQFSKREEAEAAL 230
KA RTLF+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+
Sbjct: 436 KATRTLFIGNL-EKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAI 494
Query: 231 KSPDA-VMGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
K D +GN +KL + S+P DG+S NVS +T H
Sbjct: 495 KKMDGEYLGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 537
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 194 LLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA--VMGNRFIKLWWANRDS 251
L HF ++G VV + A V +S+ E+A+AA+K + GN+ IK+ +ANR+S
Sbjct: 534 LTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAAVKETKGRKIGGNK-IKVDFANRES 592
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-V 236
T+FV + S E L F +FGE+V + IP+ FVQF R AE AL+ + V
Sbjct: 305 TIFVGGLD-SSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 363
Query: 237 MGNRFIKLWWA 247
+G + ++L W
Sbjct: 364 IGKQTVRLSWG 374
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 16/106 (15%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYI-PLNS--ERAFVQFSKREEAEAAL 230
KA RTLF+ N+ K+ L + FQ+FGE+VDI I +N + AF+Q+ A+
Sbjct: 435 KATRTLFIGNL-EKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAI 493
Query: 231 KSPDA-VMGNRFIKLWWANRDSIPD-----DGISGVNVS---MTSH 267
K D +GN +KL + S+P DG+S NVS +T H
Sbjct: 494 KKMDGEYLGNNRLKLGFGK--SMPTNCVWLDGLSS-NVSDQYLTRH 536
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKREEAEAALKS 232
LF+ N+P ++ E +L+ F+ FG V ++IPL+ + AFV FS A AA ++
Sbjct: 316 LFIRNLPFAASGDE-ILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374
Query: 233 PD-AVMGNRFIKLWWA-NRDSIPDDG 256
D + R + L A N+D++ + G
Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAETG 400
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-V 236
T+FV + S E L F +FGE+V + IP+ FVQF R AE AL+ + V
Sbjct: 307 TIFVGGLD-SSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 365
Query: 237 MGNRFIKLWWA 247
+G + ++L W
Sbjct: 366 IGKQTVRLSWG 376
>sp|Q59W50|CWC2_CANAL Pre-mRNA-splicing factor CWC2 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC2 PE=3 SV=1
Length = 363
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAE---AALKSPD 234
TL+V + +K N + L+ +FQ+FG V + + AFV +A+ A++S
Sbjct: 142 TLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGKGCAFVTMKTENQAQFAKEAMQSQS 201
Query: 235 AVMG-NRFIKLWWANRDSIP 253
V G N + + WAN D P
Sbjct: 202 LVEGSNEVLYVRWANEDKNP 221
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKRE 224
M + P K++ TL+V + + E L +HF +FGE+ I + + AF+QF+ R+
Sbjct: 220 MPRLDPPEDKSITTLYVGGLGDTISESE-LRNHFYQFGEIRTITVVQRQQCAFIQFATRQ 278
Query: 225 EAE-AALKSPDAVMGN-RFIKLWWA 247
AE AA KS + ++ N R + + W
Sbjct: 279 SAETAAEKSFNKLIVNGRRLNVKWG 303
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV- 236
T+FV + S + L + F ++GE+V + IP FVQFS++ AE AL+ + V
Sbjct: 262 TVFVGGLD-ASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 237 MGNRFIKLWWANRDS 251
+G ++L W S
Sbjct: 321 LGGTTVRLSWGRSPS 335
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKRE 224
M + P K++ TL+V + + E L +HF +FGE+ I + + AF+QF+ R+
Sbjct: 220 MPRLDPPEDKSITTLYVGGLGDTISESE-LRNHFYQFGEIRTITVVQRQQCAFIQFATRQ 278
Query: 225 EAE-AALKSPDAVMGN-RFIKLWWA 247
AE AA KS + ++ N R + + W
Sbjct: 279 AAEMAAEKSFNKLIVNGRRLNVKWG 303
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAE-AA 229
P K++ TL++ + E L +HF +FGE+ I I + AF+QF+ R+ AE AA
Sbjct: 226 PDDKSITTLYIGGLGENVTDSE-LRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAA 284
Query: 230 LKSPDAVMGN-RFIKLWW----ANRDSIPDDGISGVNVSM 264
KS + ++ N R + + W A R DG++ + +
Sbjct: 285 EKSFNKLIINGRRLNVKWGRSQAARGKGEKDGVTESGIRL 324
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SER----AFVQFSKREEAEAAL 230
+LF+ NV + R E L F ++G +VD+YIPL+ + R A+VQF +AE AL
Sbjct: 11 SLFIRNV-ADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 84 AVSQNTSMSVWGRIGSSKNRSNVKEKIDA-TLNSLDYLENETK---EDREALPSLQGSYR 139
+ ++ T V+ ++G+ K+ + K+K A L S+ + E K + ++AL LQG
Sbjct: 732 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--- 788
Query: 140 RGKRIIEGDAIQKNM-DPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHF 198
++G ++ + + +TK R + P ++ + V N+P ++N+RE + F
Sbjct: 789 ---HTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQRE-IRELF 844
Query: 199 QKFGEVVDIYIP-----LNSER--AFVQFSKREEAEA---ALKSPDAVMGNRFIKLWWAN 248
FGE+ + +P + R FV F +++A+ AL + G R + L WA+
Sbjct: 845 STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV-LEWAD 903
Query: 249 RD 250
+
Sbjct: 904 SE 905
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SER----AFVQFSKREEAEAALK 231
+LFV NV R E L F ++G +VD+Y+PL+ + R A+VQF +AE AL
Sbjct: 11 SLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 232 SPD 234
+ D
Sbjct: 70 NLD 72
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SER----AFVQFSKREEAEAALK 231
+LFV NV R E L F ++G +VD+Y+PL+ + R A+VQF +AE AL
Sbjct: 11 SLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 232 SPD 234
+ D
Sbjct: 70 NLD 72
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIP---LNSERAFVQFSKREEAEAAL 230
K+ RTLF+ N+ E L SHF+ FGE+++I I LN+ AF Q+S A+
Sbjct: 653 KSTRTLFIGNLEKDITAGE-LRSHFEAFGEIIEIDIKKQGLNA-YAFCQYSDIVSVVKAM 710
Query: 231 KSPDA-VMGNRFIKLWWANRDSIPDDG--ISGVNVSMTSHGMTAASFPAHTSVTNKVKDN 287
+ D +G+ IKL + S+P + I GV+ + S + F +VT D
Sbjct: 711 RKMDGEHLGSNRIKLGFGK--SMPTNCVWIDGVDEKV-SESFLQSQFTRFGAVTKVSIDR 767
Query: 288 NLQ 290
N Q
Sbjct: 768 NRQ 770
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNR--REALLSHFQKFGEVVDIYIPLNSERAFVQFSK 222
M ++ P +++RTL++ + +NR + L F GE+ I + L AFV ++
Sbjct: 216 MPSLTPPDDESIRTLYIGGL---NNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTT 272
Query: 223 REEAEAA---LKSPDAVMGNRFIKLWWANRDSIPDDGISGVNVSMTSHGMTAASFPAHTS 279
RE AE A L + + G R +W + P+D +G + GM +
Sbjct: 273 REGAEKAAEELANKLVIKGIRLKLMWGKPQAPKPEDDEAGRQGHVAHGGMLPRAV----- 327
Query: 280 VTNKVKDNNLQSTTLKGGNIVPAAD--VSLPAP 310
++ + + Q ++G P+ ++PAP
Sbjct: 328 ISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAP 360
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 194 LLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV-MGNRFIKLWWAN---- 248
L ++FQ FG +V + IP+ FVQ+ R AEAA+ + N ++L W
Sbjct: 329 LRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQ 388
Query: 249 ----RDSIPDDGISGVNVSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIV 300
+ ++ + + P+ T + DNN+ ST L G I+
Sbjct: 389 TALLQQAMLSNSLQVQQQQPGLQQPNYGYIPSSTCEAPVLPDNNVSSTMLPGCQIL 444
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 171 PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER------AFVQFSKRE 224
P + + +L V+N+ +++ + L F+K+G V D+YIP + AFV+F +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 225 EAEAALKSPD-AVMGNRFIKLWWANRDSIPD 254
+AE A+ + D AV+ R +++ A PD
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGRPPD 97
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E+ L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPDDKTITTLYVGG--LGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAE-AALKSPDAVMGN-RFIKLWWA 247
+ AE AA KS + ++ N R + + W
Sbjct: 278 QAAEVAAEKSFNKLIVNGRRLNVKWG 303
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAAL 230
+TLFV N ++ R L HF+ +G++V++ I N AF+Q+ +E+A AL
Sbjct: 96 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNF--AFIQYEAQEDATRAL 147
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPEDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAEAA 229
+ AE A
Sbjct: 278 QAAEVA 283
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALK-SPDA 235
+TLFV N + R L HF+ +G++V++ I N AF+Q+ +E+A AL S ++
Sbjct: 97 KTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNF--AFIQYEAQEDATRALDASNNS 154
Query: 236 VMGNRFIKLWWANRD 250
+ ++ I + +A +D
Sbjct: 155 KLMDKVISVEYAVKD 169
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPEDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAEAA 229
+ AE A
Sbjct: 278 QAAEVA 283
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPEDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAEAA 229
+ AE A
Sbjct: 278 QAAEVA 283
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPEDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAEAA 229
+ AE A
Sbjct: 278 QAAEVA 283
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 126 EDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA--QNDHMRNI--RKPSQKALRTLFV 181
E A+ + G Y + + G A KN P A QN N P+ T+FV
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNT---TIFV 264
Query: 182 NNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV-MGNR 240
+ E L S F +FGE++ + IP FVQ++ + AE AL + +G +
Sbjct: 265 GGLDANVTDDE-LKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 241 FIKLWWA 247
I+L W
Sbjct: 324 SIRLSWG 330
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 MRNIRKPSQKALRTLFVNNVPLKSNRREA-LLSHFQKFGEVVDIYIPLNSERAFVQFSKR 223
M + P K + TL+V L E L +HF +FGE+ I + + AF+QF+ R
Sbjct: 220 MPRLDPPEDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR 277
Query: 224 EEAEAA 229
+ AE A
Sbjct: 278 QAAEVA 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,679,668
Number of Sequences: 539616
Number of extensions: 10238143
Number of successful extensions: 44870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 43677
Number of HSP's gapped (non-prelim): 1554
length of query: 634
length of database: 191,569,459
effective HSP length: 124
effective length of query: 510
effective length of database: 124,657,075
effective search space: 63575108250
effective search space used: 63575108250
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)