Query 048615
Match_columns 634
No_of_seqs 450 out of 2359
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 100.0 2.4E-33 5.3E-38 279.6 14.5 188 48-251 46-239 (321)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-28 4.6E-33 260.9 30.0 151 81-250 11-171 (352)
3 TIGR01645 half-pint poly-U bin 99.9 3.1E-25 6.6E-30 249.8 30.0 166 76-250 111-284 (612)
4 TIGR01628 PABP-1234 polyadenyl 99.9 6.2E-26 1.4E-30 257.4 23.8 151 82-249 9-166 (562)
5 TIGR01622 SF-CC1 splicing fact 99.9 2E-23 4.3E-28 230.7 30.0 165 75-248 92-264 (457)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-23 5.4E-28 232.3 30.5 158 81-251 10-175 (481)
7 TIGR01648 hnRNP-R-Q heterogene 99.9 2.8E-24 6.2E-29 241.5 22.0 142 81-248 66-220 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.1E-22 4.6E-27 224.9 27.3 166 81-250 104-351 (481)
9 KOG0127 Nucleolar protein fibr 99.9 3.6E-23 7.8E-28 222.5 19.0 166 83-249 15-195 (678)
10 TIGR01659 sex-lethal sex-letha 99.9 2.5E-23 5.4E-28 222.7 17.7 158 73-250 108-275 (346)
11 KOG0117 Heterogeneous nuclear 99.9 1E-21 2.3E-26 207.6 21.2 142 83-249 93-247 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-21 6.8E-26 216.0 24.6 167 73-248 176-373 (509)
13 KOG0145 RNA-binding protein EL 99.9 2.4E-21 5.3E-26 192.8 19.7 153 79-250 47-209 (360)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9.7E-22 2.1E-26 209.7 16.1 173 75-249 92-348 (352)
15 KOG0148 Apoptosis-promoting RN 99.9 7E-21 1.5E-25 190.8 15.8 229 71-555 5-242 (321)
16 KOG0131 Splicing factor 3b, su 99.8 1.1E-20 2.4E-25 180.2 7.8 167 68-253 5-180 (203)
17 KOG0144 RNA-binding protein CU 99.8 8.6E-20 1.9E-24 192.4 15.0 151 84-252 45-208 (510)
18 TIGR01628 PABP-1234 polyadenyl 99.8 7.2E-20 1.6E-24 208.0 13.7 171 75-249 181-363 (562)
19 TIGR01648 hnRNP-R-Q heterogene 99.8 1.4E-18 2.9E-23 195.9 16.1 154 83-252 148-309 (578)
20 TIGR01659 sex-lethal sex-letha 99.8 1.4E-17 2.9E-22 178.7 20.2 73 175-248 106-185 (346)
21 KOG0124 Polypyrimidine tract-b 99.7 4.4E-17 9.5E-22 168.7 18.8 166 74-247 113-287 (544)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.2E-17 2.5E-22 187.2 15.2 175 74-249 297-501 (509)
23 KOG0123 Polyadenylate-binding 99.7 5.3E-17 1.2E-21 175.2 17.8 137 83-250 8-153 (369)
24 KOG0127 Nucleolar protein fibr 99.7 2.9E-17 6.3E-22 177.3 14.4 171 75-248 120-376 (678)
25 TIGR01645 half-pint poly-U bin 99.7 6.8E-16 1.5E-20 174.6 21.1 71 175-246 106-183 (612)
26 KOG0110 RNA-binding protein (R 99.7 1E-16 2.2E-21 178.0 10.8 166 75-251 518-694 (725)
27 TIGR01622 SF-CC1 splicing fact 99.7 1E-15 2.2E-20 169.5 16.0 174 74-249 188-447 (457)
28 KOG0117 Heterogeneous nuclear 99.6 4.1E-16 8.8E-21 165.6 10.1 152 85-252 176-333 (506)
29 KOG0109 RNA-binding protein LA 99.6 3.6E-16 7.8E-21 158.5 8.7 141 86-257 15-157 (346)
30 KOG0147 Transcriptional coacti 99.6 4.1E-15 9E-20 161.7 14.3 155 86-248 192-356 (549)
31 KOG0145 RNA-binding protein EL 99.6 3.4E-15 7.3E-20 149.2 11.2 162 86-248 140-356 (360)
32 PLN03134 glycine-rich RNA-bind 99.5 1.2E-13 2.5E-18 131.0 12.8 76 176-252 34-116 (144)
33 KOG0123 Polyadenylate-binding 99.4 1.7E-13 3.7E-18 148.1 9.3 181 35-243 48-239 (369)
34 KOG0153 Predicted RNA-binding 99.4 3.5E-13 7.7E-18 139.8 9.0 76 460-550 224-302 (377)
35 KOG4205 RNA-binding protein mu 99.4 3.3E-13 7.3E-18 141.9 7.2 158 81-251 14-177 (311)
36 KOG0110 RNA-binding protein (R 99.3 7.5E-12 1.6E-16 139.8 14.2 168 73-248 386-596 (725)
37 KOG0144 RNA-binding protein CU 99.3 4.8E-12 1E-16 134.4 11.5 60 175-235 33-98 (510)
38 KOG2135 Proteins containing th 99.3 3.1E-13 6.8E-18 144.7 2.0 191 343-552 225-447 (526)
39 PF00076 RRM_1: RNA recognitio 99.3 6E-12 1.3E-16 102.2 7.0 64 179-243 1-70 (70)
40 KOG0121 Nuclear cap-binding pr 99.3 5.6E-12 1.2E-16 114.7 6.4 73 175-248 35-114 (153)
41 KOG4206 Spliceosomal protein s 99.3 2.4E-11 5.2E-16 120.5 10.9 155 90-248 30-220 (221)
42 KOG0105 Alternative splicing f 99.2 2.3E-10 5E-15 110.1 14.7 155 75-235 9-172 (241)
43 KOG0106 Alternative splicing f 99.2 1.2E-11 2.5E-16 123.5 6.1 157 82-249 10-170 (216)
44 PLN03120 nucleic acid binding 99.2 5E-11 1.1E-15 121.9 10.5 72 176-249 4-79 (260)
45 KOG0107 Alternative splicing f 99.2 4.2E-11 9.2E-16 114.4 8.8 76 176-252 10-87 (195)
46 KOG0149 Predicted RNA-binding 99.2 3.2E-11 7E-16 120.0 7.2 73 176-249 12-90 (247)
47 KOG0125 Ataxin 2-binding prote 99.2 4.5E-11 9.7E-16 123.5 7.9 72 176-248 96-172 (376)
48 KOG0146 RNA-binding protein ET 99.1 1.2E-10 2.6E-15 117.4 8.7 93 141-252 2-103 (371)
49 KOG4207 Predicted splicing fac 99.1 7.6E-11 1.6E-15 115.1 7.0 78 174-252 11-95 (256)
50 KOG0122 Translation initiation 99.1 1.3E-10 2.9E-15 116.1 8.7 75 175-250 188-269 (270)
51 KOG0146 RNA-binding protein ET 99.1 9.6E-11 2.1E-15 118.0 7.7 77 174-251 283-366 (371)
52 PF14259 RRM_6: RNA recognitio 99.1 1.8E-10 4E-15 94.5 7.5 64 179-243 1-70 (70)
53 PF13893 RRM_5: RNA recognitio 99.1 2.5E-10 5.5E-15 90.2 7.5 54 194-247 1-56 (56)
54 smart00362 RRM_2 RNA recogniti 99.1 5E-10 1.1E-14 89.5 8.7 66 178-244 1-71 (72)
55 KOG0147 Transcriptional coacti 99.1 3.4E-10 7.4E-15 123.9 9.6 166 83-248 288-526 (549)
56 KOG0105 Alternative splicing f 99.1 6.8E-10 1.5E-14 106.9 10.3 77 175-252 5-85 (241)
57 KOG0111 Cyclophilin-type pepti 99.0 1.8E-10 3.8E-15 113.4 5.3 77 176-253 10-93 (298)
58 PLN03213 repressor of silencin 99.0 8.6E-10 1.9E-14 118.8 8.8 73 176-249 10-87 (759)
59 cd00590 RRM RRM (RNA recogniti 99.0 3E-09 6.4E-14 85.5 8.7 68 178-246 1-74 (74)
60 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.4E-14 113.1 8.7 79 170-249 222-302 (377)
61 PLN03121 nucleic acid binding 99.0 2.2E-09 4.8E-14 108.4 9.5 70 176-247 5-78 (243)
62 PLN03134 glycine-rich RNA-bind 98.9 1.3E-09 2.7E-14 103.5 6.4 81 73-154 35-116 (144)
63 COG0724 RNA-binding proteins ( 98.9 3.8E-09 8.2E-14 105.1 9.2 73 176-249 115-194 (306)
64 KOG0114 Predicted RNA-binding 98.9 5.6E-09 1.2E-13 92.2 8.9 73 175-248 17-93 (124)
65 KOG1190 Polypyrimidine tract-b 98.9 1E-08 2.2E-13 108.8 12.1 161 83-249 308-490 (492)
66 KOG0113 U1 small nuclear ribon 98.9 4.9E-09 1.1E-13 107.5 8.8 76 175-251 100-182 (335)
67 KOG0130 RNA-binding protein RB 98.9 2.8E-09 6.1E-14 98.0 6.2 72 176-248 72-150 (170)
68 smart00360 RRM RNA recognition 98.9 5.8E-09 1.3E-13 82.9 7.4 64 181-245 1-71 (71)
69 KOG4212 RNA-binding protein hn 98.9 2.3E-07 5E-12 99.3 21.0 150 96-247 68-291 (608)
70 KOG4211 Splicing factor hnRNP- 98.9 8.7E-09 1.9E-13 111.8 10.5 155 81-247 18-179 (510)
71 KOG0126 Predicted RNA-binding 98.8 1.7E-09 3.7E-14 104.0 0.8 72 176-248 35-113 (219)
72 COG0724 RNA-binding proteins ( 98.8 2.8E-08 6E-13 98.9 9.2 138 74-213 117-261 (306)
73 KOG0108 mRNA cleavage and poly 98.7 1.6E-08 3.5E-13 111.0 7.7 75 177-252 19-100 (435)
74 KOG0132 RNA polymerase II C-te 98.7 1.4E-08 3.1E-13 114.7 7.1 74 176-250 421-495 (894)
75 KOG4207 Predicted splicing fac 98.7 5.2E-09 1.1E-13 102.5 2.2 72 81-152 21-93 (256)
76 KOG0131 Splicing factor 3b, su 98.7 1.5E-08 3.2E-13 97.7 5.1 72 176-248 9-87 (203)
77 KOG1190 Polypyrimidine tract-b 98.7 9.4E-08 2E-12 101.6 11.2 163 85-253 162-376 (492)
78 KOG1457 RNA binding protein (c 98.7 4.6E-08 1E-12 96.9 8.0 152 83-235 44-270 (284)
79 PLN03120 nucleic acid binding 98.7 1.7E-07 3.6E-12 96.3 12.3 77 464-552 4-81 (260)
80 KOG0109 RNA-binding protein LA 98.6 3.7E-08 8E-13 100.9 5.9 71 177-250 3-74 (346)
81 PF00076 RRM_1: RNA recognitio 98.6 6.1E-08 1.3E-12 78.5 6.1 68 467-544 1-70 (70)
82 KOG1548 Transcription elongati 98.6 2.7E-07 5.9E-12 96.5 11.9 170 75-247 137-349 (382)
83 KOG0124 Polypyrimidine tract-b 98.6 2.3E-08 4.9E-13 104.7 3.9 69 176-245 113-188 (544)
84 PF14605 Nup35_RRM_2: Nup53/35 98.6 9.2E-08 2E-12 75.5 5.5 53 464-532 1-53 (53)
85 KOG4206 Spliceosomal protein s 98.6 1.3E-07 2.8E-12 94.3 7.3 76 175-251 8-91 (221)
86 PF13893 RRM_5: RNA recognitio 98.5 2.7E-07 5.9E-12 72.8 7.3 54 483-548 1-56 (56)
87 KOG0226 RNA-binding proteins [ 98.5 1.9E-07 4.1E-12 94.2 7.8 183 40-245 70-265 (290)
88 KOG0149 Predicted RNA-binding 98.5 1.6E-07 3.4E-12 94.0 7.1 77 460-545 8-85 (247)
89 smart00361 RRM_1 RNA recogniti 98.5 2.2E-07 4.7E-12 77.1 6.8 54 191-244 2-69 (70)
90 KOG0415 Predicted peptidyl pro 98.5 1.2E-07 2.5E-12 99.2 6.1 75 174-249 237-318 (479)
91 KOG0120 Splicing factor U2AF, 98.5 1.8E-07 3.8E-12 103.8 7.2 163 86-251 305-493 (500)
92 KOG0122 Translation initiation 98.5 9.9E-08 2.2E-12 95.8 4.4 79 73-152 190-269 (270)
93 smart00361 RRM_1 RNA recogniti 98.5 1.9E-07 4E-12 77.5 5.1 55 93-147 15-70 (70)
94 KOG0111 Cyclophilin-type pepti 98.5 6.4E-08 1.4E-12 95.6 2.1 57 97-153 34-91 (298)
95 KOG1548 Transcription elongati 98.4 6.5E-06 1.4E-10 86.4 16.6 78 174-252 132-223 (382)
96 KOG0125 Ataxin 2-binding prote 98.4 1.6E-07 3.4E-12 97.7 4.0 77 73-153 97-175 (376)
97 PLN03121 nucleic acid binding 98.4 3.4E-06 7.3E-11 85.7 12.2 76 462-549 3-80 (243)
98 KOG0120 Splicing factor U2AF, 98.4 1.1E-05 2.5E-10 89.7 17.0 136 115-251 223-370 (500)
99 KOG0121 Nuclear cap-binding pr 98.3 2.3E-07 5E-12 85.0 2.2 77 73-150 37-114 (153)
100 PLN03213 repressor of silencin 98.3 3.7E-07 7.9E-12 98.9 3.6 72 76-152 14-88 (759)
101 KOG0112 Large RNA-binding prot 98.3 7E-07 1.5E-11 102.8 5.4 146 85-252 384-533 (975)
102 KOG4212 RNA-binding protein hn 98.3 1.2E-06 2.5E-11 94.0 6.3 73 174-247 534-608 (608)
103 smart00360 RRM RNA recognition 98.3 1.2E-06 2.6E-11 69.4 4.6 64 84-147 7-71 (71)
104 KOG4661 Hsp27-ERE-TATA-binding 98.2 2E-05 4.4E-10 86.9 15.1 74 175-249 404-484 (940)
105 smart00362 RRM_2 RNA recogniti 98.2 5.5E-06 1.2E-10 65.9 7.8 69 466-545 1-71 (72)
106 KOG0151 Predicted splicing reg 98.2 2.7E-06 5.7E-11 95.9 7.9 78 174-252 172-259 (877)
107 PF14259 RRM_6: RNA recognitio 98.2 1.2E-06 2.7E-11 71.6 3.9 63 82-145 7-70 (70)
108 KOG0126 Predicted RNA-binding 98.2 7.4E-07 1.6E-11 86.1 2.7 70 81-150 43-113 (219)
109 cd00590 RRM RRM (RNA recogniti 98.2 8.3E-06 1.8E-10 65.2 8.4 72 466-547 1-74 (74)
110 KOG4210 Nuclear localization s 98.2 3.1E-06 6.8E-11 89.0 7.5 151 91-252 106-266 (285)
111 KOG0132 RNA polymerase II C-te 98.2 3E-06 6.5E-11 96.4 7.6 96 464-584 421-522 (894)
112 KOG0226 RNA-binding proteins [ 98.2 5.6E-07 1.2E-11 90.9 1.4 91 48-150 177-268 (290)
113 KOG1456 Heterogeneous nuclear 98.1 3.6E-05 7.9E-10 81.5 13.7 158 86-248 135-361 (494)
114 KOG0108 mRNA cleavage and poly 98.1 2.3E-06 5E-11 94.3 4.2 71 83-153 28-99 (435)
115 KOG4208 Nucleolar RNA-binding 98.0 1.3E-05 2.7E-10 79.2 7.6 75 175-250 48-130 (214)
116 KOG0113 U1 small nuclear ribon 98.0 3.6E-06 7.8E-11 86.8 3.9 72 82-153 110-182 (335)
117 KOG1457 RNA binding protein (c 98.0 3.2E-05 7E-10 77.1 9.7 76 176-252 34-120 (284)
118 KOG4205 RNA-binding protein mu 98.0 7.9E-06 1.7E-10 86.6 5.0 75 176-251 6-86 (311)
119 KOG0116 RasGAP SH3 binding pro 97.9 2.3E-05 5E-10 86.1 8.6 75 176-251 288-368 (419)
120 KOG0114 Predicted RNA-binding 97.9 1.1E-05 2.4E-10 71.6 3.9 72 76-151 22-94 (124)
121 KOG0533 RRM motif-containing p 97.9 3.4E-05 7.3E-10 79.1 7.6 75 176-251 83-163 (243)
122 KOG0107 Alternative splicing f 97.9 4.5E-05 9.8E-10 73.6 7.9 76 462-551 8-87 (195)
123 KOG0106 Alternative splicing f 97.8 1.8E-05 4E-10 79.5 5.0 71 177-250 2-73 (216)
124 KOG4660 Protein Mei2, essentia 97.8 1E-05 2.3E-10 89.5 3.1 68 175-243 74-143 (549)
125 KOG0151 Predicted splicing reg 97.8 0.00018 3.8E-09 81.6 12.4 92 456-553 165-259 (877)
126 KOG2135 Proteins containing th 97.8 9E-06 1.9E-10 88.3 2.0 77 174-250 370-446 (526)
127 KOG2193 IGF-II mRNA-binding pr 97.8 3.8E-06 8.2E-11 89.8 -1.0 140 81-248 9-155 (584)
128 KOG0130 RNA-binding protein RB 97.7 1.1E-05 2.3E-10 74.8 1.3 71 83-153 82-153 (170)
129 KOG0128 RNA-binding protein SA 97.7 2.4E-05 5.1E-10 90.2 3.7 135 81-251 675-816 (881)
130 KOG1365 RNA-binding protein Fu 97.7 2.5E-05 5.4E-10 82.9 3.2 163 82-248 170-360 (508)
131 KOG1456 Heterogeneous nuclear 97.6 0.0006 1.3E-08 72.5 12.7 144 90-239 305-474 (494)
132 KOG0129 Predicted RNA-binding 97.6 0.00027 5.8E-09 78.0 10.4 147 82-232 268-432 (520)
133 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00012 2.7E-09 57.8 5.6 52 177-230 2-53 (53)
134 KOG0415 Predicted peptidyl pro 97.6 4.2E-05 9.1E-10 80.5 3.6 84 67-151 227-318 (479)
135 KOG4209 Splicing factor RNPS1, 97.6 0.00023 5E-09 72.8 8.2 73 176-250 101-180 (231)
136 KOG4208 Nucleolar RNA-binding 97.5 7.8E-05 1.7E-09 73.7 3.6 60 90-149 66-127 (214)
137 KOG4454 RNA binding protein (R 97.4 6.2E-05 1.4E-09 74.9 1.9 75 173-248 6-85 (267)
138 KOG4454 RNA binding protein (R 97.3 3.6E-05 7.8E-10 76.6 -1.0 133 72-235 9-147 (267)
139 KOG0533 RRM motif-containing p 97.3 0.0012 2.7E-08 67.8 9.2 87 459-555 78-166 (243)
140 COG5175 MOT2 Transcriptional r 97.2 0.00068 1.5E-08 71.2 6.7 71 177-247 115-200 (480)
141 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.00073 1.6E-08 60.4 5.5 83 463-549 5-90 (100)
142 KOG0115 RNA-binding protein p5 97.1 0.0058 1.3E-07 62.5 12.1 93 129-247 9-111 (275)
143 PF11608 Limkain-b1: Limkain b 97.0 0.0016 3.5E-08 56.1 5.9 69 177-250 3-77 (90)
144 PF08777 RRM_3: RNA binding mo 97.0 0.0013 2.9E-08 59.2 5.6 57 177-234 2-58 (105)
145 KOG4211 Splicing factor hnRNP- 96.7 0.0033 7.2E-08 69.3 7.3 71 177-249 11-85 (510)
146 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0067 1.5E-07 54.3 8.0 70 176-248 6-90 (100)
147 PF04059 RRM_2: RNA recognitio 96.7 0.007 1.5E-07 53.9 7.7 73 177-250 2-87 (97)
148 KOG4307 RNA binding protein RB 96.6 0.0036 7.8E-08 71.2 6.9 170 73-247 310-511 (944)
149 KOG4676 Splicing factor, argin 96.5 0.0013 2.7E-08 70.5 1.7 167 69-237 4-213 (479)
150 KOG3152 TBP-binding protein, a 96.2 0.0023 5E-08 65.3 1.7 63 177-240 75-156 (278)
151 KOG1365 RNA-binding protein Fu 96.1 0.012 2.7E-07 63.0 6.7 128 115-247 102-240 (508)
152 KOG1855 Predicted RNA-binding 96.1 0.0052 1.1E-07 66.7 3.8 60 175-235 230-308 (484)
153 PF08777 RRM_3: RNA binding mo 96.0 0.019 4E-07 51.9 6.7 54 466-534 3-56 (105)
154 KOG0128 RNA-binding protein SA 95.6 0.00075 1.6E-08 78.2 -4.8 147 90-246 589-741 (881)
155 KOG4209 Splicing factor RNPS1, 95.5 0.017 3.7E-07 59.2 4.9 61 90-151 118-179 (231)
156 KOG1996 mRNA splicing factor [ 95.5 0.028 6.1E-07 58.5 6.3 59 191-249 300-366 (378)
157 KOG1995 Conserved Zn-finger pr 95.3 0.014 2.9E-07 62.4 3.6 76 175-251 65-155 (351)
158 KOG4660 Protein Mei2, essentia 95.1 0.016 3.6E-07 64.8 3.7 72 459-544 70-143 (549)
159 PF15023 DUF4523: Protein of u 95.1 0.075 1.6E-06 50.3 7.4 75 173-248 83-160 (166)
160 KOG2314 Translation initiation 94.9 0.066 1.4E-06 60.2 7.2 70 176-247 58-141 (698)
161 KOG4661 Hsp27-ERE-TATA-binding 94.9 0.021 4.6E-07 63.8 3.5 65 86-153 421-486 (940)
162 KOG2416 Acinus (induces apopto 94.6 0.06 1.3E-06 60.8 6.2 75 174-249 442-521 (718)
163 PF04847 Calcipressin: Calcipr 94.4 0.099 2.1E-06 51.9 6.6 62 190-251 8-72 (184)
164 KOG0116 RasGAP SH3 binding pro 94.4 0.021 4.7E-07 63.1 2.2 74 75-150 291-365 (419)
165 KOG4285 Mitotic phosphoprotein 93.8 0.12 2.6E-06 54.3 6.0 65 460-540 193-258 (350)
166 KOG4307 RNA binding protein RB 93.5 0.19 4E-06 57.9 7.3 69 177-246 868-943 (944)
167 PF15023 DUF4523: Protein of u 93.3 0.2 4.3E-06 47.5 6.0 72 464-550 86-161 (166)
168 KOG0129 Predicted RNA-binding 93.2 0.17 3.7E-06 56.6 6.3 66 459-534 366-432 (520)
169 KOG2202 U2 snRNP splicing fact 93.0 0.04 8.6E-07 56.6 1.2 56 193-248 84-146 (260)
170 KOG4285 Mitotic phosphoprotein 92.9 0.26 5.5E-06 51.9 6.8 70 176-247 197-267 (350)
171 COG5175 MOT2 Transcriptional r 92.9 0.12 2.6E-06 54.9 4.3 62 91-152 138-203 (480)
172 KOG2068 MOT2 transcription fac 92.5 0.048 1E-06 58.0 1.0 72 177-248 78-161 (327)
173 KOG4676 Splicing factor, argin 92.0 0.18 4E-06 54.5 4.5 71 177-248 8-87 (479)
174 PF10309 DUF2414: Protein of u 91.5 0.76 1.7E-05 37.7 6.6 54 177-233 6-62 (62)
175 PF08952 DUF1866: Domain of un 91.1 0.64 1.4E-05 44.4 6.6 57 480-551 50-112 (146)
176 KOG2314 Translation initiation 90.6 0.16 3.4E-06 57.3 2.5 57 90-147 81-139 (698)
177 KOG2891 Surface glycoprotein [ 90.4 0.41 8.9E-06 49.7 5.0 72 177-248 150-266 (445)
178 PF08952 DUF1866: Domain of un 90.2 0.9 2E-05 43.4 6.8 73 176-250 27-107 (146)
179 PF11608 Limkain-b1: Limkain b 90.0 0.31 6.8E-06 42.3 3.2 36 115-150 39-75 (90)
180 KOG1996 mRNA splicing factor [ 89.6 0.45 9.7E-06 49.9 4.6 54 93-148 309-363 (378)
181 KOG0112 Large RNA-binding prot 88.7 0.12 2.7E-06 60.9 -0.2 73 174-247 370-448 (975)
182 KOG2193 IGF-II mRNA-binding pr 88.6 0.43 9.3E-06 52.2 3.8 72 177-249 2-75 (584)
183 PF10309 DUF2414: Protein of u 87.2 2.3 4.9E-05 34.9 6.3 56 462-534 3-61 (62)
184 KOG2202 U2 snRNP splicing fact 87.0 0.2 4.4E-06 51.5 0.2 53 96-149 92-145 (260)
185 PF04059 RRM_2: RNA recognitio 86.9 1.1 2.3E-05 40.1 4.7 48 100-150 33-85 (97)
186 KOG4574 RNA-binding protein (c 86.8 0.37 8.1E-06 56.6 2.2 71 178-249 300-373 (1007)
187 KOG2591 c-Mpl binding protein, 85.0 2.1 4.7E-05 48.5 6.9 94 124-243 146-245 (684)
188 PF10567 Nab6_mRNP_bdg: RNA-re 83.5 2.4 5.1E-05 44.8 6.0 85 463-549 14-106 (309)
189 KOG4210 Nuclear localization s 83.4 0.69 1.5E-05 49.0 2.1 72 81-153 193-265 (285)
190 KOG3088 Secretory carrier memb 80.1 1.8 3.9E-05 45.5 3.7 27 325-351 61-87 (313)
191 PF08675 RNA_bind: RNA binding 79.1 6.1 0.00013 34.4 6.0 54 177-234 10-63 (87)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 78.8 3.3 7.1E-05 40.8 5.0 59 176-235 7-77 (176)
193 PF03880 DbpA: DbpA RNA bindin 73.9 3.1 6.6E-05 34.9 2.8 44 95-149 31-74 (74)
194 PF04847 Calcipressin: Calcipr 71.3 11 0.00023 37.6 6.4 60 480-552 9-72 (184)
195 KOG4849 mRNA cleavage factor I 71.3 2.9 6.4E-05 44.9 2.6 65 176-241 80-153 (498)
196 KOG1995 Conserved Zn-finger pr 65.3 8.7 0.00019 41.6 4.6 90 461-553 63-156 (351)
197 KOG2318 Uncharacterized conser 65.1 20 0.00043 41.2 7.6 73 175-247 173-305 (650)
198 PF14111 DUF4283: Domain of un 64.1 2.2 4.8E-05 40.0 0.0 106 85-211 33-139 (153)
199 PF11767 SET_assoc: Histone ly 62.5 32 0.0007 28.5 6.5 54 188-244 11-65 (66)
200 COG4942 Membrane-bound metallo 62.0 38 0.00082 37.9 8.9 36 331-366 185-220 (420)
201 PF03880 DbpA: DbpA RNA bindin 60.7 26 0.00057 29.2 5.9 67 178-247 2-74 (74)
202 PF07576 BRAP2: BRCA1-associat 59.8 86 0.0019 28.6 9.5 71 177-247 13-92 (110)
203 KOG3088 Secretory carrier memb 59.3 11 0.00023 40.0 3.8 32 332-363 61-92 (313)
204 KOG0804 Cytoplasmic Zn-finger 58.8 22 0.00048 39.8 6.3 71 176-247 74-153 (493)
205 PF07576 BRAP2: BRCA1-associat 58.0 68 0.0015 29.3 8.5 83 460-552 8-96 (110)
206 KOG2253 U1 snRNP complex, subu 56.5 6 0.00013 45.9 1.7 68 175-246 39-107 (668)
207 KOG4019 Calcineurin-mediated s 55.1 15 0.00033 36.3 4.0 75 177-251 11-91 (193)
208 KOG2416 Acinus (induces apopto 54.6 4.6 9.9E-05 46.3 0.4 61 73-139 445-506 (718)
209 KOG2068 MOT2 transcription fac 51.4 6.5 0.00014 42.2 0.9 61 91-151 98-162 (327)
210 PHA01750 hypothetical protein 51.2 23 0.0005 29.3 3.8 36 325-360 39-74 (75)
211 KOG1855 Predicted RNA-binding 45.7 18 0.0004 40.1 3.2 68 464-533 231-304 (484)
212 KOG3152 TBP-binding protein, a 41.6 21 0.00046 37.2 2.7 76 464-541 74-156 (278)
213 TIGR03319 YmdA_YtgF conserved 40.8 1.2E+02 0.0027 34.9 9.1 16 457-472 237-252 (514)
214 PF04568 IATP: Mitochondrial A 40.3 62 0.0013 29.2 5.2 15 349-363 83-97 (100)
215 PF11577 NEMO: NF-kappa-B esse 39.3 79 0.0017 26.5 5.3 38 325-362 28-65 (68)
216 PF07292 NID: Nmi/IFP 35 domai 39.1 75 0.0016 28.0 5.4 70 118-197 1-72 (88)
217 KOG2891 Surface glycoprotein [ 37.5 36 0.00077 35.9 3.7 49 457-506 142-201 (445)
218 PF08776 VASP_tetra: VASP tetr 36.9 89 0.0019 23.5 4.6 22 329-350 9-31 (40)
219 PF12072 DUF3552: Domain of un 33.7 2.5E+02 0.0055 28.1 9.1 25 360-384 139-163 (201)
220 KOG1656 Protein involved in gl 33.2 79 0.0017 32.0 5.1 28 330-357 20-50 (221)
221 PF14282 FlxA: FlxA-like prote 33.1 66 0.0014 29.0 4.3 17 347-363 24-40 (106)
222 KOG1029 Endocytic adaptor prot 31.6 1.2E+02 0.0026 36.5 6.9 21 516-536 696-716 (1118)
223 PRK00106 hypothetical protein; 31.4 2.2E+02 0.0047 33.2 9.0 16 457-472 258-273 (535)
224 PF15513 DUF4651: Domain of un 31.0 71 0.0015 26.3 3.7 23 480-502 8-30 (62)
225 PRK12704 phosphodiesterase; Pr 30.5 2.3E+02 0.0049 32.9 9.1 17 457-473 243-259 (520)
226 PRK11637 AmiB activator; Provi 29.5 1.6E+02 0.0034 32.9 7.5 32 333-364 196-227 (428)
227 PF02344 Myc-LZ: Myc leucine z 29.4 1.1E+02 0.0024 21.9 3.8 19 337-355 10-28 (32)
228 PF10567 Nab6_mRNP_bdg: RNA-re 29.3 67 0.0015 34.3 4.1 72 176-248 15-106 (309)
229 KOG4849 mRNA cleavage factor I 29.3 24 0.00051 38.3 0.9 74 73-147 81-157 (498)
230 PF08675 RNA_bind: RNA binding 28.8 2.3E+02 0.005 24.9 6.6 54 463-534 8-61 (87)
231 KOG0115 RNA-binding protein p5 27.2 52 0.0011 34.4 2.8 59 465-534 32-91 (275)
232 KOG0804 Cytoplasmic Zn-finger 26.3 2.3E+02 0.0049 32.1 7.6 84 456-550 66-155 (493)
233 KOG2591 c-Mpl binding protein, 24.1 1.3E+02 0.0028 34.8 5.4 58 461-533 171-230 (684)
234 PF00403 HMA: Heavy-metal-asso 24.1 2.7E+02 0.0058 21.6 6.0 54 178-232 1-58 (62)
235 PF11853 DUF3373: Protein of u 24.0 68 0.0015 36.7 3.2 28 340-367 36-63 (489)
236 PRK13729 conjugal transfer pil 23.7 1.2E+02 0.0027 34.5 5.2 35 459-495 237-276 (475)
237 COG2900 SlyX Uncharacterized p 23.2 2.6E+02 0.0057 23.7 5.7 39 325-363 5-43 (72)
238 PRK13729 conjugal transfer pil 22.8 1.2E+02 0.0025 34.7 4.8 17 454-470 253-269 (475)
239 PF04568 IATP: Mitochondrial A 22.7 2E+02 0.0043 26.0 5.3 9 353-361 73-81 (100)
240 PRK13895 conjugal transfer pro 21.8 3E+02 0.0066 26.4 6.5 38 334-371 35-72 (144)
241 KOG4483 Uncharacterized conser 21.5 1.1E+02 0.0024 34.0 4.1 54 177-232 392-446 (528)
242 PF11853 DUF3373: Protein of u 20.6 59 0.0013 37.2 1.9 12 541-552 282-293 (489)
243 COG1382 GimC Prefoldin, chaper 20.4 2.2E+02 0.0048 26.5 5.3 25 338-362 73-97 (119)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-33 Score=279.58 Aligned_cols=188 Identities=17% Similarity=0.293 Sum_probs=157.5
Q ss_pred CCCc-cccccCCCCC-CccccccCCCCCCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCH
Q 048615 48 NDET-ESLLNEDSSN-NHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETK 125 (634)
Q Consensus 48 ~~~~-~~~~~~~~~~-~~h~~~~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~ 125 (634)
+|.+ +..+++++++ |||+||+|+.+ .+....+.+.+..||+|.+.++++|+.+. +++|||||.|-++
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~--------eI~~e~lr~aF~pFGevS~akvirD~~T~---KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSP--------EIDNEKLREAFAPFGEVSDAKVIRDMNTG---KSKGYGFVSFPNK 114 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcch--------hcchHHHHHHhccccccccceEeecccCC---cccceeEEeccch
Confidence 8988 5556655555 99999999974 12245566678888888888888777654 5699999999999
Q ss_pred HHH-HHHhccCCceeCCEEEEEccCcccCCCCccc--cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCC
Q 048615 126 EDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK--AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFG 202 (634)
Q Consensus 126 e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~--~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG 202 (634)
++| +||..|||++|++|.||.+|+..|......+ .+.+.- ..+.+.+|+||||||+.. ++++.||++|+.||
T Consensus 115 ~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~----NQssp~NtsVY~G~I~~~-lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVY----NQSSPDNTSVYVGNIASG-LTEDLMRQTFSPFG 189 (321)
T ss_pred HHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHh----ccCCCCCceEEeCCcCcc-ccHHHHHHhcccCC
Confidence 999 9999999999999999999999887432222 222221 235567999999999995 99999999999999
Q ss_pred CEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 203 EVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 203 ~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
.|.+|||.++++|+||.|.++|.|.+||..+|+ .|+|+.+||+|.|...
T Consensus 190 ~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 190 PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999999999999999999 8999999999998643
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.1e-28 Score=260.92 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=132.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++++..+|.++|+|..+++++++.++.++|||||+|.+.++| +||..|||..|.|++|+|.++.+....
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~---- 86 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS---- 86 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc----
Confidence 445678899999999999999999999888888999999999999999 999999999999999999988654311
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~l 233 (634)
...++|||+|||.. +++++|+.+|++||.|..++++.+ ++||||+|.+.++|..|++.|
T Consensus 87 --------------~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 87 --------------IKGANLYVSGLPKT-MTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred --------------cccceEEECCcccc-CCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 12468999999995 999999999999999999998875 369999999999999999999
Q ss_pred CC-ccCC--eEEEEEeecCC
Q 048615 234 DA-VMGN--RFIKLWWANRD 250 (634)
Q Consensus 234 ng-~l~g--R~IkV~wak~~ 250 (634)
+| .+.| +.|+|.|+...
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CCCccCCCceeEEEEECCCC
Confidence 99 5655 78999998644
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=3.1e-25 Score=249.80 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=137.0
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM 154 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~ 154 (634)
+|+| +....+++.++.+|.++|.|..++++.++.+++++|||||+|.+.++| +||..|||..|.||+|+|.+......
T Consensus 111 fVGn-Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~ 189 (612)
T TIGR01645 111 YVGS-ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ 189 (612)
T ss_pred EEcC-CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc
Confidence 4444 455678888999999999999888888888888999999999999999 99999999999999999986543321
Q ss_pred CCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHH
Q 048615 155 DPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEA 228 (634)
Q Consensus 155 ~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~ 228 (634)
... ..+.. .......++|||+|||++ +++++|+++|++||.|.+|+|.++ +|||||+|.+.++|.+
T Consensus 190 a~~---~~~~~----~~~~~~~~rLfVgnLp~~-vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 190 AQP---IIDMV----QEEAKKFNRIYVASVHPD-LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccc---ccccc----cccccccceEEeecCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 111 00000 011123579999999996 999999999999999999999875 4799999999999999
Q ss_pred HHHcCCC-ccCCeEEEEEeecCC
Q 048615 229 ALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 229 Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
|+..||+ .|+|+.|+|.|+...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 9999999 899999999999753
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.2e-26 Score=257.44 Aligned_cols=151 Identities=17% Similarity=0.269 Sum_probs=130.0
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcccc
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~ 160 (634)
....+++.++.+|.++|.|..+++++++.+++++|||||+|.+.++| +||..||+..|.|++|+|.|+...... +
T Consensus 9 p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~---~- 84 (562)
T TIGR01628 9 DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL---R- 84 (562)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc---c-
Confidence 34567888999999999988888888888778899999999999999 999999999999999999987532210 0
Q ss_pred ccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC
Q 048615 161 QNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 161 ~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng 235 (634)
....++|||+|||.+ +++++|+++|++||.|..|+|..+ ++||||+|.+.++|.+|++.++|
T Consensus 85 ------------~~~~~~vfV~nLp~~-~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 85 ------------RSGVGNIFVKNLDKS-VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred ------------ccCCCceEEcCCCcc-CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 011468999999996 999999999999999999999875 47999999999999999999999
Q ss_pred -ccCCeEEEEEeecC
Q 048615 236 -VMGNRFIKLWWANR 249 (634)
Q Consensus 236 -~l~gR~IkV~wak~ 249 (634)
.++|+.|.|.+...
T Consensus 152 ~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 152 MLLNDKEVYVGRFIK 166 (562)
T ss_pred cEecCceEEEecccc
Confidence 79999999987643
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2e-23 Score=230.75 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=133.5
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+.|+| +....++..+..+|..+|.|..+..++++.++.++|||||+|.+.++| +|| .|+|..|.|++|.|.++....
T Consensus 92 l~V~n-lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~ 169 (457)
T TIGR01622 92 VFVLQ-LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEK 169 (457)
T ss_pred EEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhh
Confidence 34444 444567788889999999999888888888888899999999999999 888 599999999999998765432
Q ss_pred CCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHH
Q 048615 154 MDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAE 227 (634)
Q Consensus 154 ~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~ 227 (634)
...... ... .....+..++|||+|||+. +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.
T Consensus 170 ~~~~~~--~~~----~~~~~p~~~~l~v~nl~~~-~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 170 NRAAKA--ATH----QPGDIPNFLKLYVGNLHFN-ITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred hhhhhc--ccc----cCCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 111000 000 0001123689999999995 999999999999999999999865 369999999999999
Q ss_pred HHHHcCCC-ccCCeEEEEEeec
Q 048615 228 AALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 228 ~Ai~~lng-~l~gR~IkV~wak 248 (634)
+|+..|+| .|.|+.|+|.|+.
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEcc
Confidence 99999999 8999999999997
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=2.5e-23 Score=232.32 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=123.0
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhc--cCCceeCCEEEEEccCcccCCCCc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPS--LQGSYRRGKRIIEGDAIQKNMDPS 157 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~--mnG~~l~GR~I~V~~a~~k~~~~~ 157 (634)
+....+++++..+|.++|.|..+..++. +|||||+|.+.++| +||.. +|+..|.|++|+|.++..+.....
T Consensus 10 Lp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~ 83 (481)
T TIGR01649 10 LPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRD 83 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccC
Confidence 3345677778888888888777766642 68999999999999 99976 588999999999999876532111
Q ss_pred cccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCC--eEEEEeCCHHHHHHHHHcCCC
Q 048615 158 TKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE--RAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 158 ~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg--~AFV~F~s~e~A~~Ai~~lng 235 (634)
.. .+. . ........+|||+||++ ++++++|+++|+.||.|.+|.|+++++ +|||+|.+.++|.+|++.|||
T Consensus 84 ~~--~~~--~--~~~~~~~~~v~v~nl~~-~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng 156 (481)
T TIGR01649 84 GN--SDF--D--SAGPNKVLRVIVENPMY-PITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNG 156 (481)
T ss_pred CC--Ccc--c--CCCCCceEEEEEcCCCC-CCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcC
Confidence 00 000 0 00111235899999999 599999999999999999999988764 899999999999999999999
Q ss_pred -ccCC--eEEEEEeecCCC
Q 048615 236 -VMGN--RFIKLWWANRDS 251 (634)
Q Consensus 236 -~l~g--R~IkV~wak~~~ 251 (634)
.|.| +.|+|.|++...
T Consensus 157 ~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 157 ADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred CcccCCceEEEEEEecCCC
Confidence 5643 689999998643
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=2.8e-24 Score=241.53 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=118.6
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeC-CEEEEEccCcccCCCCcc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRR-GKRIIEGDAIQKNMDPST 158 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~-GR~I~V~~a~~k~~~~~~ 158 (634)
+....+++.+..+|.++|.|..++++++ .++.++|||||+|.+.++| +||..|||..+. ||.|.|.++.
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------- 136 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------- 136 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------
Confidence 4456788899999999999888888888 5668899999999999999 999999999985 7777776432
Q ss_pred ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEEEEEec-------CCCeEEEEeCCHHHHHHHH
Q 048615 159 KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGE-VVDIYIPL-------NSERAFVQFSKREEAEAAL 230 (634)
Q Consensus 159 ~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~v~v~~-------dkg~AFV~F~s~e~A~~Ai 230 (634)
.+++|||+|||.. +++++|.+.|++|+. |+++.+.. .++||||+|.++++|..|+
T Consensus 137 ----------------~~~rLFVgNLP~~-~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Ai 199 (578)
T TIGR01648 137 ----------------DNCRLFVGGIPKN-KKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMAR 199 (578)
T ss_pred ----------------cCceeEeecCCcc-hhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHH
Confidence 1579999999995 999999999999974 44444432 3579999999999999999
Q ss_pred HcCCC---ccCCeEEEEEeec
Q 048615 231 KSPDA---VMGNRFIKLWWAN 248 (634)
Q Consensus 231 ~~lng---~l~gR~IkV~wak 248 (634)
+.++. .+.|+.|+|.|+.
T Consensus 200 rkL~~gki~l~Gr~I~VdwA~ 220 (578)
T TIGR01648 200 RKLMPGRIQLWGHVIAVDWAE 220 (578)
T ss_pred HHhhccceEecCceEEEEeec
Confidence 98863 4789999999985
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=2.1e-22 Score=224.90 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=125.8
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCC--EEEEEccCcccCCC--
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRG--KRIIEGDAIQKNMD-- 155 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~G--R~I~V~~a~~k~~~-- 155 (634)
+....+++.++.+|+++|.|..+.+++++ + .|||||+|.+.++| +|+..|||..|.| +.|+|.++......
T Consensus 104 l~~~vt~~~L~~~F~~~G~V~~v~i~~~~-~---~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~ 179 (481)
T TIGR01649 104 PMYPITLDVLYQIFNPYGKVLRIVTFTKN-N---VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVK 179 (481)
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEecC-C---ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeE
Confidence 34456778888889999988877665543 2 47999999999999 9999999999965 47888887653310
Q ss_pred -----------Cccc-------------ccc----------------cc----------c----------c-------cc
Q 048615 156 -----------PSTK-------------AQN----------------DH----------M----------R-------NI 168 (634)
Q Consensus 156 -----------~~~~-------------~~~----------------d~----------~----------~-------~~ 168 (634)
+... ... .. . . ..
T Consensus 180 ~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
T TIGR01649 180 YNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAP 259 (481)
T ss_pred ecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccc
Confidence 0000 000 00 0 0 00
Q ss_pred --------CCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccC
Q 048615 169 --------RKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMG 238 (634)
Q Consensus 169 --------~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~ 238 (634)
.....+++++|||+|||++.+++++|+++|+.||.|.+|+|++++ +||||+|.+.++|..|+..|+| .|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~ 339 (481)
T TIGR01649 260 LAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF 339 (481)
T ss_pred cCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 000123568999999997339999999999999999999999874 8999999999999999999999 799
Q ss_pred CeEEEEEeecCC
Q 048615 239 NRFIKLWWANRD 250 (634)
Q Consensus 239 gR~IkV~wak~~ 250 (634)
|+.|+|.|++..
T Consensus 340 g~~l~v~~s~~~ 351 (481)
T TIGR01649 340 GKPLRVCPSKQQ 351 (481)
T ss_pred CceEEEEEcccc
Confidence 999999998644
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=222.51 Aligned_cols=166 Identities=22% Similarity=0.328 Sum_probs=133.4
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcc---
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPST--- 158 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~--- 158 (634)
...+...+...|+.+|+|+.++.+..+-....||||||.|.-.||+ +|+...++..|.||.|+|..+..+......
T Consensus 15 ~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~ 94 (678)
T KOG0127|consen 15 FSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKG 94 (678)
T ss_pred CccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccc
Confidence 3456667788888999998888888887778899999999999999 999999999999999999998876532210
Q ss_pred -ccccccccccCCCC----CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHH
Q 048615 159 -KAQNDHMRNIRKPS----QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEA 228 (634)
Q Consensus 159 -~~~~d~~~~~~~~s----~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~ 228 (634)
+..........++. ..+..+|.|+|||+ .+...+|..+|+.||.|++|.|++.+ |||||+|....+|..
T Consensus 95 e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf-~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~ 173 (678)
T KOG0127|consen 95 ENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPF-KCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEK 173 (678)
T ss_pred cchhhhcccccCCcchhhccCccceEEeecCCc-ccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHH
Confidence 00000000000011 11246899999999 59999999999999999999998754 699999999999999
Q ss_pred HHHcCCC-ccCCeEEEEEeecC
Q 048615 229 ALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 229 Ai~~lng-~l~gR~IkV~wak~ 249 (634)
|++.+|+ .|+||+|.|+||-.
T Consensus 174 Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 174 ALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred HHHhccCceecCceeEEeeecc
Confidence 9999999 89999999999963
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.90 E-value=2.5e-23 Score=222.72 Aligned_cols=158 Identities=21% Similarity=0.287 Sum_probs=135.8
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+.+.|.+ +....++++++.+|..+|.|..+++++++.++.++|||||+|.+.++| +||..|||..|.+++|+|.++.+
T Consensus 108 ~~LfVgn-Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 108 TNLIVNY-LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred cEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 3444444 566778899999999999998888888887788899999999999999 99999999999999999998764
Q ss_pred cCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHH
Q 048615 152 KNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREE 225 (634)
Q Consensus 152 k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~ 225 (634)
... ....++|||+|||+. +++++|+++|++||.|+.|+|++++ +||||+|.++++
T Consensus 187 ~~~------------------~~~~~~lfV~nLp~~-vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 187 GGE------------------SIKDTNLYVTNLPRT-ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred ccc------------------ccccceeEEeCCCCc-ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 221 012468999999995 9999999999999999999999875 699999999999
Q ss_pred HHHHHHcCCC-ccCC--eEEEEEeecCC
Q 048615 226 AEAALKSPDA-VMGN--RFIKLWWANRD 250 (634)
Q Consensus 226 A~~Ai~~lng-~l~g--R~IkV~wak~~ 250 (634)
|++||+.|++ .+.+ ++|+|.|++..
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999 5654 79999999754
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1e-21 Score=207.59 Aligned_cols=142 Identities=23% Similarity=0.311 Sum_probs=125.3
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCcee-CCEEEEEccCcccCCCCcccc
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYR-RGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l-~GR~I~V~~a~~k~~~~~~~~ 160 (634)
.+-.++++.-+|++||.|-.++.|.++.++.+||||||.|.++++| +||..||+.+| .||.|.|..+.
T Consensus 93 rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv---------- 162 (506)
T KOG0117|consen 93 RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV---------- 162 (506)
T ss_pred ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee----------
Confidence 4667889999999999999999999999999999999999999999 99999999998 69999988543
Q ss_pred ccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEEEEEec-------CCCeEEEEeCCHHHHHHHHHc
Q 048615 161 QNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGE-VVDIYIPL-------NSERAFVQFSKREEAEAALKS 232 (634)
Q Consensus 161 ~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~v~v~~-------dkg~AFV~F~s~e~A~~Ai~~ 232 (634)
.+|+|||||||. +.++++|.+.|++.++ |++|-|.. ++|||||+|.+|..|..|.+.
T Consensus 163 --------------an~RLFiG~IPK-~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 163 --------------ANCRLFIGNIPK-TKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred --------------ecceeEeccCCc-cccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 268999999999 5899999999999886 66776654 458999999999999999987
Q ss_pred CC-C--ccCCeEEEEEeecC
Q 048615 233 PD-A--VMGNRFIKLWWANR 249 (634)
Q Consensus 233 ln-g--~l~gR~IkV~wak~ 249 (634)
|- + .+-|..|.|+||.+
T Consensus 228 l~~g~~klwgn~~tVdWAep 247 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEP 247 (506)
T ss_pred ccCCceeecCCcceeeccCc
Confidence 74 5 57899999999963
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=3.1e-21 Score=215.96 Aligned_cols=167 Identities=13% Similarity=0.182 Sum_probs=121.4
Q ss_pred CCcccccCCCccccccccccceeee------------cceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCcee
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRI------------GSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYR 139 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~I------------g~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l 139 (634)
..++|+| +.+..++..+..+|..+ +.|..+.. ...+|||||+|.+.++| .|| .|||..|
T Consensus 176 r~lyVgn-Lp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 176 RRLYVGG-IPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cEEEEeC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 3455666 55566777888877653 12222211 23489999999999999 999 6999999
Q ss_pred CCEEEEEccCcccCCCCc-----cccccc-cccc-----cCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEE
Q 048615 140 RGKRIIEGDAIQKNMDPS-----TKAQND-HMRN-----IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIY 208 (634)
Q Consensus 140 ~GR~I~V~~a~~k~~~~~-----~~~~~d-~~~~-----~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~ 208 (634)
.|++|+|.........+. .....+ .... .........++|||+|||+. +++++|+++|+.||.|..+.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLY-LGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEE
Confidence 999999986543221100 000000 0000 00111234579999999995 99999999999999999999
Q ss_pred EecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 209 IPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 209 v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
|+.+ +|||||+|.+.++|..|+..|+| .|+|+.|+|.|+.
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 9875 47999999999999999999999 8999999999986
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.4e-21 Score=192.78 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=134.9
Q ss_pred cCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCc
Q 048615 79 NAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPS 157 (634)
Q Consensus 79 n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~ 157 (634)
|-+.-.-++++++|+|+.||++..++.+++|..+.+=|||||.|-+++|| +||..|||..|..+.|+|.++++.+..
T Consensus 47 NYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~-- 124 (360)
T KOG0145|consen 47 NYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS-- 124 (360)
T ss_pred eecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh--
Confidence 43455578999999999999999999999999999999999999999999 999999999999999999999765421
Q ss_pred cccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHH
Q 048615 158 TKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALK 231 (634)
Q Consensus 158 ~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~ 231 (634)
.....|||.+||. +++..+|..+|++||.|...+|..| +|.+||.|+.+.+|+.||+
T Consensus 125 ----------------Ik~aNLYvSGlPk-tMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 125 ----------------IKDANLYVSGLPK-TMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred ----------------hcccceEEecCCc-cchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 1135899999999 6999999999999999999888776 4799999999999999999
Q ss_pred cCCC-c--cCCeEEEEEeecCC
Q 048615 232 SPDA-V--MGNRFIKLWWANRD 250 (634)
Q Consensus 232 ~lng-~--l~gR~IkV~wak~~ 250 (634)
.+|| . -.-.+|.|.|++..
T Consensus 188 ~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCc
Confidence 9999 3 33578999999633
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.87 E-value=9.7e-22 Score=209.74 Aligned_cols=173 Identities=20% Similarity=0.298 Sum_probs=132.3
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCC--EEEEEccCcc
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRG--KRIIEGDAIQ 151 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~G--R~I~V~~a~~ 151 (634)
+.|.+ +....+++.+..+|.++|.+..+..+.++.++.++|||||+|.+.++| +||..|||..+.| ++|.|.++..
T Consensus 92 l~v~~-l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 92 LYVSG-LPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred EEECC-ccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 34443 444567788889999998888777777777777899999999999999 9999999999987 6788988764
Q ss_pred cCCCCc--------------ccc--cc-----------------------c---c----------------ccc------
Q 048615 152 KNMDPS--------------TKA--QN-----------------------D---H----------------MRN------ 167 (634)
Q Consensus 152 k~~~~~--------------~~~--~~-----------------------d---~----------------~~~------ 167 (634)
...... ... .. . . ...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T TIGR01661 171 PSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATD 250 (352)
T ss_pred CCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcccc
Confidence 331000 000 00 0 0 000
Q ss_pred ---------cCC-CCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHH
Q 048615 168 ---------IRK-PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALK 231 (634)
Q Consensus 168 ---------~~~-~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~ 231 (634)
... .......+|||+|||++ +++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~-~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 251 GQTAGLAAGAQIAASDGAGYCIFVYNLSPD-TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred ccccccccCCCCCCCCCCCcEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 000 00112347999999996 999999999999999999999987 4799999999999999999
Q ss_pred cCCC-ccCCeEEEEEeecC
Q 048615 232 SPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 232 ~lng-~l~gR~IkV~wak~ 249 (634)
.||| .|+||.|+|.|...
T Consensus 330 ~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 330 SLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred HhCCCEECCeEEEEEEccC
Confidence 9999 89999999999863
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7e-21 Score=190.76 Aligned_cols=229 Identities=22% Similarity=0.349 Sum_probs=177.9
Q ss_pred CCCCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHHHHHhccCCceeCCEEEEEccCc
Q 048615 71 ADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 71 ~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.|.+.+|+| +...-+++.+..+|..||+|..++++ |+ .|+|.|+.
T Consensus 5 ~prtlyvgn-ld~~vte~~i~~lf~qig~v~~~k~i---------------~~-------------------e~~v~wa~ 49 (321)
T KOG0148|consen 5 EPRTLYVGN-LDSTVTEDFIATLFNQIGSVTKTKVI---------------FD-------------------ELKVNWAT 49 (321)
T ss_pred CCceEEeec-cChhhHHHHHHHHHHhccccccceee---------------hh-------------------hhcccccc
Confidence 345667777 66667899999999999999987553 33 45677776
Q ss_pred ccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHH
Q 048615 151 QKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKRE 224 (634)
Q Consensus 151 ~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e 224 (634)
..... .++.......|||+.|..+ ++-++|++.|.+||+|.+++|++| +||+||.|-+.+
T Consensus 50 ~p~nQ-------------sk~t~~~hfhvfvgdls~e-I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 50 APGNQ-------------SKPTSNQHFHVFVGDLSPE-IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred CcccC-------------CCCccccceeEEehhcchh-cchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 43100 0112222568999999996 999999999999999999999997 479999999999
Q ss_pred HHHHHHHcCCC-ccCCeEEEEEeecCCCCCCCCCCCCCcCcccCCCCCCCCCCCcccccccccCCCcccccCCCCCCCCC
Q 048615 225 EAEAALKSPDA-VMGNRFIKLWWANRDSIPDDGISGVNVSMTSHGMTAASFPAHTSVTNKVKDNNLQSTTLKGGNIVPAA 303 (634)
Q Consensus 225 ~A~~Ai~~lng-~l~gR~IkV~wak~~~~~~~g~~gg~~s~~~~~~~~~~~p~~~~~~~~~k~~n~~~~~~~~~~~~~~~ 303 (634)
+|+.||..|+| .|++|.||.+||.+..... ++ +
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~---------------------------n~-~------------------ 149 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSEM---------------------------NG-K------------------ 149 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCcccc---------------------------CC-C------------------
Confidence 99999999999 8999999999996322000 00 0
Q ss_pred ccCCCCCCCCcccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHhh
Q 048615 304 DVSLPAPDHPTVITNSPKPPPPLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQAGGKSDVVSEKAAKRLKVG 383 (634)
Q Consensus 304 ~~~~~~t~~~k~~~~~~~~~~~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLek~~~~k~~~~~~~~~ktlk~~ 383 (634)
+ | |-.+
T Consensus 150 ---------------------------------------~---l-------------------------------tfde- 155 (321)
T KOG0148|consen 150 ---------------------------------------P---L-------------------------------TFDE- 155 (321)
T ss_pred ---------------------------------------C---c-------------------------------cHHH-
Confidence 0 0 0000
Q ss_pred hHHHHHHHhhccccccccCCCchhhHHhhhhhccccccCccccchhhhcccccccccccCCCCCCCCCCCCccccccCCC
Q 048615 384 IAADVAKATARSSDSTAAVASPRAEMMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYKLDNR 463 (634)
Q Consensus 384 ~~~~~~k~~~~~~~~~~~~~~pk~~~~~~k~~~l~~~~~~~~k~~~~~~lq~~~~~~g~~~~~~~~G~~~~~~~~~lDnr 463 (634)
+ .|..+ ..
T Consensus 156 V----------------------------------------------------------------------~NQss--p~ 163 (321)
T KOG0148|consen 156 V----------------------------------------------------------------------YNQSS--PD 163 (321)
T ss_pred H----------------------------------------------------------------------hccCC--CC
Confidence 0 00001 13
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCc
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGH 541 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~ 541 (634)
+|+|+| |+++..++ |+.||++|..||.|-.|.+-.++ +.+||.|.|-.+|-+|+. +|..|.|+
T Consensus 164 NtsVY~-G~I~~~lt-e~~mr~~Fs~fG~I~EVRvFk~q-------------GYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 164 NTSVYV-GNIASGLT-EDLMRQTFSPFGPIQEVRVFKDQ-------------GYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred CceEEe-CCcCcccc-HHHHHHhcccCCcceEEEEeccc-------------ceEEEEecchhhHHHHHHHhcCceeCce
Confidence 589999 89999887 99999999999999999999988 899999999999999986 59999999
Q ss_pred eeEEEEeCCCCCCC
Q 048615 542 DLQFTWLMPSSSSN 555 (634)
Q Consensus 542 ~l~l~W~~~~~~~~ 555 (634)
.|+..|++......
T Consensus 229 ~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 229 LVRCSWGKEGDDGI 242 (321)
T ss_pred EEEEeccccCCCCC
Confidence 99999999887543
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=1.1e-20 Score=180.16 Aligned_cols=167 Identities=22% Similarity=0.248 Sum_probs=140.9
Q ss_pred cCCCCCCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEE
Q 048615 68 SDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIE 146 (634)
Q Consensus 68 ~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V 146 (634)
.+++|++++++| +....++..+..+|..+|+|.++++++++.+...+|||||+|.++|+| .|++-||+..|.||+|+|
T Consensus 5 ~rnqd~tiyvgn-ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGN-LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred ccCCCceEEEec-CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 355677777766 555677788999999999999999999999988999999999999999 999999999999999999
Q ss_pred ccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEE-EEecC------CCeEEEE
Q 048615 147 GDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDI-YIPLN------SERAFVQ 219 (634)
Q Consensus 147 ~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v-~v~~d------kg~AFV~ 219 (634)
+.+...... ...+.+|||+||.++ +++..|.++|+.||.|... .|+++ ++||||.
T Consensus 84 ~kas~~~~n-----------------l~vganlfvgNLd~~-vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~ 145 (203)
T KOG0131|consen 84 NKASAHQKN-----------------LDVGANLFVGNLDPE-VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFIN 145 (203)
T ss_pred Eeccccccc-----------------ccccccccccccCcc-hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEe
Confidence 977621110 011468999999995 9999999999999998763 44443 3599999
Q ss_pred eCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCCC
Q 048615 220 FSKREEAEAALKSPDA-VMGNRFIKLWWANRDSIP 253 (634)
Q Consensus 220 F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~~ 253 (634)
|.+.+.+.+|+.+++| .+++|+|.|+|+.+....
T Consensus 146 ~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 146 YASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred chhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999 899999999999765443
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.6e-20 Score=192.37 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=129.1
Q ss_pred cccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCce-eCC--EEEEEccCcccCCCCccc
Q 048615 84 AVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSY-RRG--KRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 84 ~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~-l~G--R~I~V~~a~~k~~~~~~~ 159 (634)
..++.+++.+|.++|.|..+.++|+|.++.++|||||.|.+.++| +|+..|+... |-| .+|.|+++......-
T Consensus 45 t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~--- 121 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI--- 121 (510)
T ss_pred cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc---
Confidence 368889999999999999999999999999999999999999999 9999998855 434 367888776433110
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~ln 234 (634)
...++|||+-|+.. ++|.+++++|++||.|.+|+|.++ ||||||+|.+++-|..||+.||
T Consensus 122 --------------~~e~KLFvg~lsK~-~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 122 --------------VEERKLFVGMLSKQ-CTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred --------------ccchhhhhhhcccc-ccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 12579999999995 999999999999999999999996 4799999999999999999999
Q ss_pred C--ccC--CeEEEEEeecCCCC
Q 048615 235 A--VMG--NRFIKLWWANRDSI 252 (634)
Q Consensus 235 g--~l~--gR~IkV~wak~~~~ 252 (634)
| .|. ..+|.|.||...+.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cceeeccCCCceEEEecccCCC
Confidence 9 455 47899999965543
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.81 E-value=7.2e-20 Score=208.01 Aligned_cols=171 Identities=20% Similarity=0.333 Sum_probs=134.4
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeC----CEEEEEccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRR----GKRIIEGDA 149 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~----GR~I~V~~a 149 (634)
+.|+| +....+++.+..+|.++|.|..+..+++. ++.++|||||+|.+.++| +|+..|||..+. |+.|.|.++
T Consensus 181 l~V~n-l~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 181 LYVKN-LDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred EEEeC-CCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecc
Confidence 44554 55566788888888888888877776665 456799999999999999 999999999999 999999988
Q ss_pred cccCCCCcc-ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCH
Q 048615 150 IQKNMDPST-KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKR 223 (634)
Q Consensus 150 ~~k~~~~~~-~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~ 223 (634)
..+...... ......... ........++|||+||+++ +++++|+++|++||.|.+|+|+.+. +||||+|.+.
T Consensus 259 ~~k~er~~~~~~~~~~~~~-~~~~~~~~~~l~V~nl~~~-~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 259 QKRAEREAELRRKFEELQQ-ERKMKAQGVNLYVKNLDDT-VTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNP 336 (562)
T ss_pred cChhhhHHHHHhhHHhhhh-hhhcccCCCEEEEeCCCCc-cCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCH
Confidence 655421100 000000000 0011123578999999995 9999999999999999999998764 7999999999
Q ss_pred HHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 224 EEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 224 e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
++|.+|+..++| .|+|+.|+|.|+.+
T Consensus 337 ~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 337 EEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 999999999999 89999999999965
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.78 E-value=1.4e-18 Score=195.88 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=119.4
Q ss_pred ccccccccccceeeecc--eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCC--ceeCCEEEEEccCcccCCCCc
Q 048615 83 AAVSQNTSMSVWGRIGS--SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQG--SYRRGKRIIEGDAIQKNMDPS 157 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~--V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG--~~l~GR~I~V~~a~~k~~~~~ 157 (634)
...+.+.+...|.+++. +..+.........+++|||||+|.+.++| .|+..|+. ..+.|+.|.|.|+.+......
T Consensus 148 ~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~ 227 (578)
T TIGR01648 148 KNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE 227 (578)
T ss_pred cchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc
Confidence 34566777778888754 22221112222345699999999999999 99988764 468899999999976542111
Q ss_pred cccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccC--CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC
Q 048615 158 TKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKF--GEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 158 ~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~Fskf--G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng 235 (634)
+ .....++|||+|||++ +++++|+++|++| |.|.+|.+++ +||||+|.++++|.+|++.||+
T Consensus 228 -----~--------~~~~~k~LfVgNL~~~-~tee~L~~~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG 291 (578)
T TIGR01648 228 -----D--------VMAKVKILYVRNLMTT-TTEEIIEKSFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNG 291 (578)
T ss_pred -----c--------ccccccEEEEeCCCCC-CCHHHHHHHHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCC
Confidence 0 0112478999999995 9999999999999 9999998764 6999999999999999999999
Q ss_pred -ccCCeEEEEEeecCCCC
Q 048615 236 -VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 236 -~l~gR~IkV~wak~~~~ 252 (634)
.|+|+.|+|.|+++...
T Consensus 292 ~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 292 KELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CEECCEEEEEEEccCCCc
Confidence 89999999999987543
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=1.4e-17 Score=178.66 Aligned_cols=73 Identities=23% Similarity=0.363 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+++|+.||.|++|+|+.++ +||||+|.+.++|.+|++.|++ .|.+++|+|.|+
T Consensus 106 ~~~~LfVgnLp~~-~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 106 SGTNLIVNYLPQD-MTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4789999999996 9999999999999999999998764 6999999999999999999999 799999999876
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
+
T Consensus 185 ~ 185 (346)
T TIGR01659 185 R 185 (346)
T ss_pred c
Confidence 3
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=4.4e-17 Score=168.68 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=126.8
Q ss_pred CcccccCCCcc-ccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 74 DLPVRNAGTAA-VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 74 ~~~v~n~~~~~-~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
.|.|+-+.+.| --+++++.-|..+|+++..-..-+..+++++||+||+|+-+|.| -|+..|||..++||.|+|+....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 45555544544 34555666666666666554555666778899999999999999 99999999999999999995443
Q ss_pred cCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHH
Q 048615 152 KNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREE 225 (634)
Q Consensus 152 k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~ 225 (634)
-....+ ....... ..+...+|||..+.+| +++++|+.+|+.||+|++|.+.++ +||+||+|.+..+
T Consensus 193 mpQAQp--iID~vqe-----eAk~fnRiYVaSvHpD-LSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 193 MPQAQP--IIDMVQE-----EAKKFNRIYVASVHPD-LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred Ccccch--HHHHHHH-----HHHhhheEEeeecCCC-ccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 221111 0000000 0022468999999998 999999999999999999999874 5799999999999
Q ss_pred HHHHHHcCCC-ccCCeEEEEEee
Q 048615 226 AEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 226 A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
-..|+..||- .++|..|+|--+
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hHHHhhhcchhhcccceEecccc
Confidence 9999999998 799999999765
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.74 E-value=1.2e-17 Score=187.19 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=131.9
Q ss_pred CcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 74 DLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 74 ~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
.+.|+| +....+++.+..+|..+|.|..+..++++.++.++|||||+|.+.++| .||..|||..|+|+.|+|.++...
T Consensus 297 ~l~v~n-lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 297 RIYIGN-LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 445555 455667888888888888888877777777778899999999999999 999999999999999999988654
Q ss_pred CCCCccccc----------cccccccCCCCCCCCCEEEEeCCCCC--CCC-------HHHHHHhhccCCCEEEEEEecC-
Q 048615 153 NMDPSTKAQ----------NDHMRNIRKPSQKALRTLFVNNVPLK--SNR-------REALLSHFQKFGEVVDIYIPLN- 212 (634)
Q Consensus 153 ~~~~~~~~~----------~d~~~~~~~~s~~~~~tLfVgnLp~d--~~t-------e~~L~~~FskfG~I~~v~v~~d- 212 (634)
......... .............+..+|+|.|+... .++ .++|+++|++||.|..|.|+++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~ 455 (509)
T TIGR01642 376 ANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPN 455 (509)
T ss_pred CCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccC
Confidence 321110000 00000000011234578999999641 111 2579999999999999999864
Q ss_pred --------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 213 --------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 213 --------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.|++||+|.+.++|.+|+..|+| .|+||.|.|.|...
T Consensus 456 ~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 456 GDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 36899999999999999999999 89999999999854
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.3e-17 Score=175.21 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=115.5
Q ss_pred ccccccccccceeeecc---eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcc
Q 048615 83 AAVSQNTSMSVWGRIGS---SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPST 158 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~---V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~ 158 (634)
+..++..++..|..+|+ +++|+++ + +-|||||.|.++++| +||.+||...+.|++|+|-|+....
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~----- 76 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP----- 76 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-----
Confidence 34555566666666555 5555555 3 579999999999999 9999999999999999999875322
Q ss_pred ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC----CeEEEEeCCHHHHHHHHHcCC
Q 048615 159 KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS----ERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 159 ~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai~~ln 234 (634)
+.|||.||+++ ++...|.++|+.||+|++|+|..+. +| ||+|++.++|.+|+..+|
T Consensus 77 ------------------~~~~i~nl~~~-~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 ------------------SLVFIKNLDES-IDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ------------------ceeeecCCCcc-cCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 23999999996 9999999999999999999999875 58 999999999999999999
Q ss_pred C-ccCCeEEEEEeecCC
Q 048615 235 A-VMGNRFIKLWWANRD 250 (634)
Q Consensus 235 g-~l~gR~IkV~wak~~ 250 (634)
| .+.|+.|.|..+.+.
T Consensus 137 g~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERK 153 (369)
T ss_pred CcccCCCeeEEeeccch
Confidence 9 788999999877543
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.9e-17 Score=177.34 Aligned_cols=171 Identities=25% Similarity=0.354 Sum_probs=134.5
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
.+++| ++.......+..+|+.||-|..+.++ .+.++.+.|||||.|....+| .||..|||.+|+||+|-|+||.++.
T Consensus 120 LIIRN-LPf~~k~~dLk~vFs~~G~V~Ei~IP-~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 120 LIIRN-LPFKCKKPDLKNVFSNFGKVVEIVIP-RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEeec-CCcccCcHHHHHHHhhcceEEEEEcc-cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 46777 65566667899999999999999888 555667789999999999999 9999999999999999999999876
Q ss_pred CCCc--------c-----------------c------c------cc--cc------------------ccc--cC-----
Q 048615 154 MDPS--------T-----------------K------A------QN--DH------------------MRN--IR----- 169 (634)
Q Consensus 154 ~~~~--------~-----------------~------~------~~--d~------------------~~~--~~----- 169 (634)
.-.. . . . .. +. +.. ..
T Consensus 198 ~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~ 277 (678)
T KOG0127|consen 198 TYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESD 277 (678)
T ss_pred cccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCccc
Confidence 2100 0 0 0 00 00 000 00
Q ss_pred --------CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcC--
Q 048615 170 --------KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSP-- 233 (634)
Q Consensus 170 --------~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~l-- 233 (634)
+....-..+|||+|||++ ++++.|.++|++||.|.++.|+.++ |+|||.|.+..+|..||...
T Consensus 278 k~~q~k~~~en~~~~~tVFvRNL~fD-~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 278 KKAQNKTTRENITEGKTVFVRNLPFD-TTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred chhccccccccccccceEEEecCCcc-ccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 000112379999999998 9999999999999999999998875 79999999999999999987
Q ss_pred ---CC--ccCCeEEEEEeec
Q 048615 234 ---DA--VMGNRFIKLWWAN 248 (634)
Q Consensus 234 ---ng--~l~gR~IkV~wak 248 (634)
.| .|+||.|+|..|-
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred cCCCceEEEeccEEeeeecc
Confidence 23 5899999999884
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=6.8e-16 Score=174.56 Aligned_cols=71 Identities=24% Similarity=0.454 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
..++|||+|||++ +++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.||| .|+||.|+|.+
T Consensus 106 ~~~rLfVGnLp~~-~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFE-LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3689999999995 999999999999999999999876 47999999999999999999999 89999999974
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=1e-16 Score=178.04 Aligned_cols=166 Identities=21% Similarity=0.296 Sum_probs=133.8
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccC---CCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKID---ATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~---~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.++.| +++.++...+..+|...|.|..+.+.+.+-. -.|.|||||+|.+.++| .|+..|+|+.|+|+.|.|..+.
T Consensus 518 lfvkN-lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKN-LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhc-CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 34444 7778889999888888888777755444322 13569999999999999 9999999999999999999887
Q ss_pred ccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHH
Q 048615 151 QKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKRE 224 (634)
Q Consensus 151 ~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e 224 (634)
.++.... + ...+.....++|+|.|||++ .+..+++.+|..||.|..|+|+.. +|||||+|-+..
T Consensus 597 ~k~~~~~----g-----K~~~~kk~~tKIlVRNipFe-At~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 597 NKPASTV----G-----KKKSKKKKGTKILVRNIPFE-ATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred Ccccccc----c-----cccccccccceeeeeccchH-HHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 3321111 1 11122334689999999996 999999999999999999999874 579999999999
Q ss_pred HHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 225 EAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 225 ~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
+|..|+.+|.. .|-||+|.+.||+.+.
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccch
Confidence 99999999988 7999999999998654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=1e-15 Score=169.48 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=129.7
Q ss_pred CcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 74 DLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 74 ~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
.+.|+| +....+++.+..+|..+|.|..+..+.+..++.++|||||+|.+.++| +|+..|||..|.|++|+|.++...
T Consensus 188 ~l~v~n-l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 188 KLYVGN-LHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EEEEcC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 344544 445567888888999999888888887777778899999999999999 999999999999999999996521
Q ss_pred CCCC-----------------ccc------------ccc----------------------c-ccc--------------
Q 048615 153 NMDP-----------------STK------------AQN----------------------D-HMR-------------- 166 (634)
Q Consensus 153 ~~~~-----------------~~~------------~~~----------------------d-~~~-------------- 166 (634)
.... ... ... + ...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (457)
T TIGR01622 267 TYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAI 346 (457)
T ss_pred CccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccccc
Confidence 1000 000 000 0 000
Q ss_pred ---ccCCC---CCCCCCEEEEeCCCCCCCC----------HHHHHHhhccCCCEEEEEEecC--CCeEEEEeCCHHHHHH
Q 048615 167 ---NIRKP---SQKALRTLFVNNVPLKSNR----------REALLSHFQKFGEVVDIYIPLN--SERAFVQFSKREEAEA 228 (634)
Q Consensus 167 ---~~~~~---s~~~~~tLfVgnLp~d~~t----------e~~L~~~FskfG~I~~v~v~~d--kg~AFV~F~s~e~A~~ 228 (634)
....+ .....+.|+|.||... .+ .++|++.|++||.|+.|.|... .|++||+|.++++|.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~l~l~n~~~~-~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 347 MARNSFVPSTNNNLATTCLVLSNMFDP-ATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred ccCCCCCCcccCCCCCcEEEEecCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 00000 1134578999998542 22 3689999999999999998743 4899999999999999
Q ss_pred HHHcCCC-ccCCeEEEEEeecC
Q 048615 229 ALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 229 Ai~~lng-~l~gR~IkV~wak~ 249 (634)
|++.|+| .|+||.|.|.|...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcH
Confidence 9999999 89999999999853
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.1e-16 Score=165.55 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=119.4
Q ss_pred ccccccccceeeecc-eeeeeccccccC-CCcCceEEEEcCCHHHH-HHHhcc-CC-ceeCCEEEEEccCcccCCCCccc
Q 048615 85 VSQNTSMSVWGRIGS-SKNRSNVKEKID-ATLNSLDYLENETKEDR-EALPSL-QG-SYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~-V~~~~~~k~k~~-~~s~GfgFVeF~~~e~A-~Ai~~m-nG-~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
.+.+++...+.++++ |.++...+.-.+ .+.||||||+|++...| .|-..| +| ..|.|..|.|.||.+...+..
T Consensus 176 k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~de-- 253 (506)
T KOG0117|consen 176 KKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDE-- 253 (506)
T ss_pred ccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCCh--
Confidence 566777788888876 333322222221 24699999999999998 665554 44 347899999999998764322
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMG 238 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~ 238 (634)
+.+.+ -..|||+||+.+ +|++.|+++|++||.|.+|..++| ||||.|.++++|.+||+.+|| .|+
T Consensus 254 ---d~ms~--------VKvLYVRNL~~~-tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 254 ---DTMSK--------VKVLYVRNLMES-TTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred ---hhhhh--------eeeeeeeccchh-hhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceec
Confidence 12111 368999999995 999999999999999999988866 999999999999999999999 899
Q ss_pred CeEEEEEeecCCCC
Q 048615 239 NRFIKLWWANRDSI 252 (634)
Q Consensus 239 gR~IkV~wak~~~~ 252 (634)
|..|.|.+||+...
T Consensus 320 G~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDK 333 (506)
T ss_pred CceEEEEecCChhh
Confidence 99999999987544
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=3.6e-16 Score=158.46 Aligned_cols=141 Identities=22% Similarity=0.332 Sum_probs=119.8
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcccccccc
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDH 164 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~ 164 (634)
+...++++|..+|.|..+-++ +.||||..+++..| +||..|+|..|+|..|+|+.+++|+
T Consensus 15 ~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs----------- 75 (346)
T KOG0109|consen 15 TEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS----------- 75 (346)
T ss_pred chHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC-----------
Confidence 445566777777766666333 67999999999999 9999999999999999999877653
Q ss_pred ccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 165 MRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 165 ~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
+..++|+|+||.+ .++..+|+..|.+||.|++|.|+++ |+||.|+-.++|..|++.|++ ++.|++++
T Consensus 76 ---------k~stkl~vgNis~-tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 76 ---------KASTKLHVGNISP-TCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ---------CCccccccCCCCc-cccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHHHhcccccccccceee
Confidence 2257999999999 5999999999999999999999865 999999999999999999999 89999999
Q ss_pred EEeecCCCCCCCCC
Q 048615 244 LWWANRDSIPDDGI 257 (634)
Q Consensus 244 V~wak~~~~~~~g~ 257 (634)
|......-++.+|.
T Consensus 144 vq~stsrlrtapgm 157 (346)
T KOG0109|consen 144 VQLSTSRLRTAPGM 157 (346)
T ss_pred eeeeccccccCCCC
Confidence 99997655544444
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=4.1e-15 Score=161.72 Aligned_cols=155 Identities=17% Similarity=0.293 Sum_probs=123.4
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCC--Ccccccc
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMD--PSTKAQN 162 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~--~~~~~~~ 162 (634)
....+..+|..+|.|+.+.++.++.++.++|-|||+|.+.+.. .|| .|.|+.+.|-+|.|......... .......
T Consensus 192 ~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~ 270 (549)
T KOG0147|consen 192 PPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQ 270 (549)
T ss_pred CchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhcccccc
Confidence 3455677777778777777888888888999999999999999 888 89999999999999866533210 0000000
Q ss_pred ccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-
Q 048615 163 DHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA- 235 (634)
Q Consensus 163 d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng- 235 (634)
. +....+...|||+||.+ ++++++|+.+|..||.|..|.+..| +||+||+|.+.+.|.+|+..|||
T Consensus 271 ~------k~~~~p~~rl~vgnLHf-Nite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 271 G------KGFTGPMRRLYVGNLHF-NITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred c------cccccchhhhhhccccc-CchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc
Confidence 0 00111233499999999 5999999999999999999999887 47999999999999999999999
Q ss_pred ccCCeEEEEEeec
Q 048615 236 VMGNRFIKLWWAN 248 (634)
Q Consensus 236 ~l~gR~IkV~wak 248 (634)
+|.||.|+|..-.
T Consensus 344 elAGr~ikV~~v~ 356 (549)
T KOG0147|consen 344 ELAGRLIKVSVVT 356 (549)
T ss_pred eecCceEEEEEee
Confidence 8999999998765
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.4e-15 Score=149.24 Aligned_cols=162 Identities=16% Similarity=0.270 Sum_probs=122.9
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCC--EEEEEccCcccCCCC------
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRG--KRIIEGDAIQKNMDP------ 156 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~G--R~I~V~~a~~k~~~~------ 156 (634)
++.++..+|.++|.+...++..+..++.++|.|||.|....+| +||..|||+.-.| .+|.|+++.......
T Consensus 140 tqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls 219 (360)
T KOG0145|consen 140 TQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLS 219 (360)
T ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhH
Confidence 4555555555555555555666677778899999999999999 9999999988765 469999887543210
Q ss_pred -----cccccccc------------------------------cc---cc-CCCCCCCCCEEEEeCCCCCCCCHHHHHHh
Q 048615 157 -----STKAQNDH------------------------------MR---NI-RKPSQKALRTLFVNNVPLKSNRREALLSH 197 (634)
Q Consensus 157 -----~~~~~~d~------------------------------~~---~~-~~~s~~~~~tLfVgnLp~d~~te~~L~~~ 197 (634)
+.+.+... +. .. -++.....-.|||-||.++ .+|..|.++
T Consensus 220 ~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd-~de~~LWQl 298 (360)
T KOG0145|consen 220 QLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPD-ADESILWQL 298 (360)
T ss_pred HhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCC-chHhHHHHH
Confidence 00110000 00 00 0112233568999999997 999999999
Q ss_pred hccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 198 FQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 198 FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
|.+||.|.+|+|++| +||+||.+.+.++|..||.++|| .+++|.|.|.|..
T Consensus 299 FgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 299 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred hCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 999999999999997 37999999999999999999999 7999999999974
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=1.2e-13 Score=130.95 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|+.|++.|++ .|+||.|+|.|++
T Consensus 34 ~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 34 STKLFIGGLSWG-TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 579999999995 999999999999999999999876 47999999999999999999999 8999999999997
Q ss_pred CCCC
Q 048615 249 RDSI 252 (634)
Q Consensus 249 ~~~~ 252 (634)
+...
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6544
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.7e-13 Score=148.09 Aligned_cols=181 Identities=19% Similarity=0.297 Sum_probs=131.6
Q ss_pred CCCchhhhcccCC-CCCccccc---cCCCCCCccccccCCCCCCcccccCCCccccccccccceeeecceeeeecccccc
Q 048615 35 PDTSPGLAALHSS-NDETESLL---NEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKI 110 (634)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~ 110 (634)
-+|..||.+||-. +.+.+.+. ..|++= +|+-.+.+ .+......+.++.||.|-+|++..+...
T Consensus 48 ~da~~A~~~~n~~~~~~~~~rim~s~rd~~~---~~i~nl~~--------~~~~~~~~d~f~~~g~ilS~kv~~~~~g-- 114 (369)
T KOG0123|consen 48 ADAERALDTMNFDVLKGKPIRIMWSQRDPSL---VFIKNLDE--------SIDNKSLYDTFSEFGNILSCKVATDENG-- 114 (369)
T ss_pred HHHHHHHHHcCCcccCCcEEEeehhccCCce---eeecCCCc--------ccCcHHHHHHHHhhcCeeEEEEEEcCCC--
Confidence 4566799999998 66665443 233322 44333321 1123444556677777777776654332
Q ss_pred CCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCC
Q 048615 111 DATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSN 189 (634)
Q Consensus 111 ~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~ 189 (634)
++|| ||+|++++.| +||..|||..+.|++|.|.....+......... .. ...+.+||.+++.+ .
T Consensus 115 ---~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~---------~~~t~v~vk~~~~~-~ 179 (369)
T KOG0123|consen 115 ---SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK---------KRFTNVYVKNLEED-S 179 (369)
T ss_pred ---ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh---------hhhhhhheeccccc-c
Confidence 6999 9999999999 999999999999999999988765532211111 11 22478999999995 9
Q ss_pred CHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 190 RREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 190 te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
++..|..+|..||.|..+.++.+ ++|+||.|.++++|..|++.+++ .+++..+.
T Consensus 180 ~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~ 239 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELY 239 (369)
T ss_pred chHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcccee
Confidence 99999999999999999999884 47999999999999999999999 55533333
No 34
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.5e-13 Score=139.84 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=70.4
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcC---C
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSG---K 536 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g---~ 536 (634)
=|-..++|+| |+|-++++ +.+||+||++||||++|.+...+ .||||+|+||.+||+|+..+ .
T Consensus 224 eD~~I~tLyI-g~l~d~v~-e~dIrdhFyqyGeirsi~~~~~~-------------~CAFv~ftTR~aAE~Aae~~~n~l 288 (377)
T KOG0153|consen 224 EDTSIKTLYI-GGLNDEVL-EQDIRDHFYQYGEIRSIRILPRK-------------GCAFVTFTTREAAEKAAEKSFNKL 288 (377)
T ss_pred cccceeEEEe-cccccchh-HHHHHHHHhhcCCeeeEEeeccc-------------ccceeeehhhHHHHHHHHhhccee
Confidence 4888999999 88888887 99999999999999999999998 89999999999999999864 4
Q ss_pred ccCCceeEEEEeCC
Q 048615 537 SWQGHDLQFTWLMP 550 (634)
Q Consensus 537 ~~~g~~l~l~W~~~ 550 (634)
.|+|++|.|.|+.+
T Consensus 289 vI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 289 VINGFRLKIKWGRP 302 (377)
T ss_pred eecceEEEEEeCCC
Confidence 77999999999999
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.40 E-value=3.3e-13 Score=141.90 Aligned_cols=158 Identities=13% Similarity=0.217 Sum_probs=132.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHHHHHhccCCceeCCEEEEEccCcccCCCCcccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~ 160 (634)
.+...+++.++.-|..+|+|..+..|+++.++.++||+||+|.+.+...++....-..|.||.|.+..+.++........
T Consensus 14 isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~ 93 (311)
T KOG4205|consen 14 LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGR 93 (311)
T ss_pred cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccc
Confidence 45678888899999999999999999999999999999999999999944445567889999999998887663322211
Q ss_pred ccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCC
Q 048615 161 QNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 161 ~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~ln 234 (634)
.. ...+|||++||++ +++.+|+++|.+||.|..+.++.|+ +|+||+|.+++...+++...-
T Consensus 94 ~~------------~tkkiFvGG~~~~-~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f 160 (311)
T KOG4205|consen 94 HL------------RTKKIFVGGLPPD-TTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKF 160 (311)
T ss_pred cc------------ceeEEEecCcCCC-CchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccce
Confidence 11 2469999999996 9999999999999999999988864 699999999999999987766
Q ss_pred CccCCeEEEEEeecCCC
Q 048615 235 AVMGNRFIKLWWANRDS 251 (634)
Q Consensus 235 g~l~gR~IkV~wak~~~ 251 (634)
..|+++.+.|.-|-+..
T Consensus 161 ~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKE 177 (311)
T ss_pred eeecCceeeEeeccchh
Confidence 68999999999996543
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=7.5e-12 Score=139.79 Aligned_cols=168 Identities=23% Similarity=0.214 Sum_probs=121.5
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+-+.++| +.+.....++..+|.++|+|..+..+... --++|+|-+..+| .|...|....+..-++++.|+..
T Consensus 386 ~vil~kN-lpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 386 TVILVKN-LPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred ceeeecc-CccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 3334444 66667777777888888877665444221 1389999999999 99999999999998998887753
Q ss_pred cCCC--Cc---------cc----c-----------ccccc-----cccCCCCC-CCCCEEEEeCCCCCCCCHHHHHHhhc
Q 048615 152 KNMD--PS---------TK----A-----------QNDHM-----RNIRKPSQ-KALRTLFVNNVPLKSNRREALLSHFQ 199 (634)
Q Consensus 152 k~~~--~~---------~~----~-----------~~d~~-----~~~~~~s~-~~~~tLfVgnLp~d~~te~~L~~~Fs 199 (634)
.... +. .. . ..+.. ...+.... ...++|||.||+++ .+.++|..+|.
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~-Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFD-TTLEDLEDLFS 537 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcc-cchhHHHHHHH
Confidence 2211 00 00 0 00000 00000011 12345999999996 99999999999
Q ss_pred cCCCEEEEEEecCC---------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 200 KFGEVVDIYIPLNS---------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 200 kfG~I~~v~v~~dk---------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+.|.|..|.|...+ |||||+|.+.++|..|++.|+| +|+|+.|.|.++.
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999887643 8999999999999999999999 8999999999875
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.8e-12 Score=134.38 Aligned_cols=60 Identities=27% Similarity=0.496 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng 235 (634)
...+|||+.||. +++|.+||.+|++||.|.+|.|++|| +||||.|.++++|.+|+.+++.
T Consensus 33 ~~vKlfVgqIpr-t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn 98 (510)
T KOG0144|consen 33 SAVKLFVGQIPR-TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHN 98 (510)
T ss_pred hhhhheeccCCc-cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhc
Confidence 356999999999 69999999999999999999999986 6999999999999999999976
No 38
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=99.33 E-value=3.1e-13 Score=144.75 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHhhhHHHHHHHhhccccc--c-ccCCCchhhHHhhhhhcccc
Q 048615 343 KQELLDQKRNDFRRQLDKLEKQAGGKSDVVSEKAAKRLKVGIAADVAKATARSSDS--T-AAVASPRAEMMADKNKLVDI 419 (634)
Q Consensus 343 KqelL~kq~eeqk~ll~kLek~~~~k~~~~~~~~~ktlk~~~~~~~~k~~~~~~~~--~-~~~~~pk~~~~~~k~~~l~~ 419 (634)
+|..|...++-+..++.+++++++|+.++.+++ |++|.. .-..++|..+..... | .-....++..++++ +++|+
T Consensus 225 ~r~el~p~~hg~~~vv~~enan~~m~s~da~ei-~~~l~~-~~ynptk~~~~~~~~fag~~~ptt~~s~n~~s~-e~vd~ 301 (526)
T KOG2135|consen 225 ERGELCPTHHGCVPVVSKENANKTMKSEDAAEI-MKTLPP-PGYNPTKPKDEVKAAFAGRCLPTTIKSKNQMSK-ELVDT 301 (526)
T ss_pred eeccccccccccceeEeeccccccccCCcchhh-hhcCCC-CCcCCCCCCCCccccCccccCCCccccccCCCC-CCCCC
Confidence 777888999999999999999999999999999 888765 334566664432211 2 22233345556777 67888
Q ss_pred ccCccccchhh----------hcccccccc--------ccc--------CCCCCC--CCCCCCccccccCCCcceEEEcC
Q 048615 420 VLSPSQKVNTA----------MVLQESTSF--------KQQ--------IRPLAP--AGPPFLMNRYKLDNRPTAFRIMP 471 (634)
Q Consensus 420 ~~~~~~k~~~~----------~~lq~~~~~--------~g~--------~~~~~~--~G~~~~~~~~~lDnr~t~l~V~~ 471 (634)
+++++.+++++ ++++..+.. +.+ ++.+++ +-+++..+++..||++..|.++.
T Consensus 302 ~~dlq~p~qaa~~vtelqrqy~e~~~~Aak~gv~e~g~~Rgel~rgrg~v~grgkg~rrG~gv~g~~~~dhs~l~lek~~ 381 (526)
T KOG2135|consen 302 PLDLQKPMQAAEEVTELQRQYTELPLEAAKGGVLESGRGRGELSRGRGAVHGRGKGRRRGRGVPGHAVVDHSPLALEKSP 381 (526)
T ss_pred HHHhcChHHHHhhhHHHHhhccccCcccccccccccCcccchhhhhhhhhhccccccccCCCCCcchhcccchhhhhccC
Confidence 88887765542 223332211 111 122221 11234567899999999999974
Q ss_pred CCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHH-HHHHHcCCccCCceeEEEEeCC
Q 048615 472 PLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSA-ERAFLSGKSWQGHDLQFTWLMP 550 (634)
Q Consensus 472 ~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~A-E~A~~~g~~~~g~~l~l~W~~~ 550 (634)
. ++.+.++|..||.+||+|+.|.+.... ..|+|||++|++| |.++..|.+|+++-++|-|+.+
T Consensus 382 ~---glnt~a~ln~hfA~fG~i~n~qv~~~~-------------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 382 F---GLNTIADLNPHFAQFGEIENIQVDYSS-------------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred C---CCchHhhhhhhhhhcCccccccccCch-------------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3 776688999999999999999887653 6899999999999 6667789999999999999999
Q ss_pred CC
Q 048615 551 SS 552 (634)
Q Consensus 551 ~~ 552 (634)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 55
No 39
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=6e-12 Score=102.24 Aligned_cols=64 Identities=34% Similarity=0.558 Sum_probs=60.2
Q ss_pred EEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 179 LfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
|||+|||++ +++++|+++|++||.|..+.+..+ ++||||+|.++++|.+|++.++| .++|+.|+
T Consensus 1 l~v~nlp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPD-VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTT-SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCc-CCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999995 999999999999999999999885 36999999999999999999999 89999986
No 40
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=5.6e-12 Score=114.70 Aligned_cols=73 Identities=26% Similarity=0.480 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..+||||+||.+ +++|++|.++|+++|.|..|-|-.|+ |||||+|.+.++|+.|++-++| .|+.|+|+++|.
T Consensus 35 ~S~tvyVgNlSf-yttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSF-YTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeee-eecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 368999999999 69999999999999999999887775 6999999999999999999999 799999999998
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.27 E-value=2.4e-11 Score=120.47 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=115.8
Q ss_pred cccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcc----------
Q 048615 90 SMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPST---------- 158 (634)
Q Consensus 90 ~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~---------- 158 (634)
+..+|.++|.|..+...++ .++||-|||.|.+.+.| .|+..|+|..+.|++|+|.+|..++.--..
T Consensus 30 L~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~ 106 (221)
T KOG4206|consen 30 LYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEK 106 (221)
T ss_pred HHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccC
Confidence 3445666665443322232 35699999999999999 999999999999999999999876521000
Q ss_pred c-----cc---cccc----------cccC----CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCe
Q 048615 159 K-----AQ---NDHM----------RNIR----KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SER 215 (634)
Q Consensus 159 ~-----~~---~d~~----------~~~~----~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~ 215 (634)
+ .. ...+ .+.. .+..+++..||+.|||.+ .+.+.|..+|.+|.....|+++.. ++.
T Consensus 107 k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~e-s~~e~l~~lf~qf~g~keir~i~~~~~i 185 (221)
T KOG4206|consen 107 KINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSE-SESEMLSDLFEQFPGFKEIRLIPPRSGI 185 (221)
T ss_pred ccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcc-hhHHHHHHHHhhCcccceeEeccCCCce
Confidence 0 00 0000 0001 122467889999999997 899999999999999999998885 579
Q ss_pred EEEEeCCHHHHHHHHHcCCC-ccC-CeEEEEEeec
Q 048615 216 AFVQFSKREEAEAALKSPDA-VMG-NRFIKLWWAN 248 (634)
Q Consensus 216 AFV~F~s~e~A~~Ai~~lng-~l~-gR~IkV~wak 248 (634)
|||+|.+...|..|...+++ .|- ...++|.|++
T Consensus 186 Afve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 186 AFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred eEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999998 443 7889988875
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.3e-10 Score=110.07 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=112.8
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
++|+| +.++--+.++.-+|-++|.|+.+ +.|.... .-.||||+|++..+| +||..-+|..++|-.|+|.++....
T Consensus 9 iyvGN-LP~diRekeieDlFyKyg~i~~i-eLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 9 IYVGN-LPGDIREKEIEDLFYKYGRIREI-ELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred EEecC-CCcchhhccHHHHHhhhcceEEE-EeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 34544 44444444555555555554443 2333322 257999999999999 9999999999999999999887543
Q ss_pred CCCcc--------ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHH
Q 048615 154 MDPST--------KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREE 225 (634)
Q Consensus 154 ~~~~~--------~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~ 225 (634)
..... ...+.......+|+.++...|.|.+||+ +-++++|++|..+-|.|....+.+| +++.|+|...++
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eD 162 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKED 162 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCC-CCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhh
Confidence 11110 0011111222345666778999999999 6999999999999999999998877 589999999999
Q ss_pred HHHHHHcCCC
Q 048615 226 AEAALKSPDA 235 (634)
Q Consensus 226 A~~Ai~~lng 235 (634)
.+-|+..++.
T Consensus 163 MkYAvr~ld~ 172 (241)
T KOG0105|consen 163 MKYAVRKLDD 172 (241)
T ss_pred HHHHHHhhcc
Confidence 9999999986
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.2e-11 Score=123.52 Aligned_cols=157 Identities=24% Similarity=0.334 Sum_probs=116.7
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcccc
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~ 160 (634)
.....+..+..+|..+|.+..+ +|+ .||+||+|++..+| +|+..+||..|.|-.+.|.++...........
T Consensus 10 ~~~~~~~d~E~~f~~yg~~~d~-~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~ 81 (216)
T KOG0106|consen 10 PYRARERDVERFFKGYGKIPDA-DMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPR 81 (216)
T ss_pred CCccchhHHHHHHhhccccccc-eee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCC
Confidence 3445555555555555554433 222 79999999999999 99999999999999999999886432211111
Q ss_pred ccc--cccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-cc
Q 048615 161 QND--HMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VM 237 (634)
Q Consensus 161 ~~d--~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l 237 (634)
.++ .......+....++.|+|.+++.. +.+.+|.++|.++|.+....+ ..+++||+|...++|..||..+++ .+
T Consensus 82 ~g~r~~~~~~~~~p~~s~~r~~~~~~~~r-~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 82 GGDRRSDSRRYRPPSRTHFRLIVRNLSLR-VSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred CCCccchhhccCCcccccceeeeccchhh-hhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhh
Confidence 110 001112333466899999999995 999999999999999965544 567999999999999999999999 89
Q ss_pred CCeEEEEEeecC
Q 048615 238 GNRFIKLWWANR 249 (634)
Q Consensus 238 ~gR~IkV~wak~ 249 (634)
.++.|.+...-.
T Consensus 159 ~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 159 NGRRISVEKNSR 170 (216)
T ss_pred cCceeeecccCc
Confidence 999999965543
No 44
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=5e-11 Score=121.91 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC---CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS---ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk---g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.++|||+|||+. +++++|+++|+.||.|.+|+|+.++ +||||+|.+.++|..|+. |+| .|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~-tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLK-ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 479999999995 9999999999999999999998864 799999999999999996 888 89999999999863
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=4.2e-11 Score=114.38 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
+++|||+||+.. +++.+|...|..||.|..|.|..+ ++||||+|++..+|+.|+..|+| .|.|..|+|.+.+....
T Consensus 10 ~~kVYVGnL~~~-a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSR-ATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCC-cchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 689999999995 999999999999999999999886 48999999999999999999999 89999999999975544
No 46
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.2e-11 Score=119.99 Aligned_cols=73 Identities=26% Similarity=0.457 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~ 249 (634)
.++||||+|+++ +..+.|+++|++||+|++..|+.|+ ||+||+|.+.++|.+|++..+-+|+||+-.|+.|.-
T Consensus 12 ~TKifVggL~w~-T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWE-THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccc-cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 579999999996 8999999999999999999999875 799999999999999999999999999999999864
No 47
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.5e-11 Score=123.52 Aligned_cols=72 Identities=31% Similarity=0.437 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
-++|+|.|||+ ...+.||+.+|.+||.|.+|.|+.+ |||+||+|++.++|++|...|+| ++.||+|.|+-|.
T Consensus 96 pkRLhVSNIPF-rFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPF-RFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCc-cccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 46999999999 4999999999999999999999985 57999999999999999999999 8999999999885
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=117.41 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=76.1
Q ss_pred CEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCe
Q 048615 141 GKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SER 215 (634)
Q Consensus 141 GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~ 215 (634)
.|+|.|+.+...+.+. ..++||||-|... -.|++++.+|..||.|.+|.|.+. +||
T Consensus 2 nrpiqvkpadsesrg~------------------~drklfvgml~kq-q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGC 62 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGG------------------DDRKLFVGMLNKQ-QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGC 62 (371)
T ss_pred CCCccccccccccCCc------------------cchhhhhhhhccc-ccHHHHHHHhcccCCcceeEEecCCCCCCCCc
Confidence 4678888776543211 1479999999995 899999999999999999999884 589
Q ss_pred EEEEeCCHHHHHHHHHcCCC--ccCC--eEEEEEeecCCCC
Q 048615 216 AFVQFSKREEAEAALKSPDA--VMGN--RFIKLWWANRDSI 252 (634)
Q Consensus 216 AFV~F~s~e~A~~Ai~~lng--~l~g--R~IkV~wak~~~~ 252 (634)
|||.|.++.+|..||..++| .+-| ..|.|.|+.-++.
T Consensus 63 AFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 63 AFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred eEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 99999999999999999999 4554 5699999865543
No 49
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=7.6e-11 Score=115.14 Aligned_cols=78 Identities=31% Similarity=0.523 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|-|-||.+. ++.++|+.+|++||.|.+|.|+.|+ |||||.|....+|+.|+.+|+| +|+||.|+|.+
T Consensus 11 ~gm~SLkVdNLTyR-Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYR-TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceecc-CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34689999999995 9999999999999999999999985 7999999999999999999999 99999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
|+-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 976554
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.3e-10 Score=116.10 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|.|.||+.+ +++++|+++|.+||.|..|.|.+|+ |||||.|.++++|.+||..|+| -+++-.|+|.|+
T Consensus 188 D~~tvRvtNLsed-~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSED-MREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccc-cChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999997 9999999999999999999999986 6999999999999999999999 589999999999
Q ss_pred cCC
Q 048615 248 NRD 250 (634)
Q Consensus 248 k~~ 250 (634)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=9.6e-11 Score=118.03 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+..|.|||..||.+ +.+.+|..+|-.||.|++.+|..|+ .|+||.|++..+|+.||.+||| .|+-++|||..
T Consensus 283 PeGCNlFIYHLPQE-FgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQE-FGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchh-hccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45799999999997 9999999999999999999988876 4999999999999999999999 79999999998
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
.++..
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 87543
No 52
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=1.8e-10 Score=94.49 Aligned_cols=64 Identities=30% Similarity=0.523 Sum_probs=58.2
Q ss_pred EEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 179 LfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
|||+|||+. +++++|+++|+.||.|..|++..++ ++|||+|.+.++|..|++.+++ .|+||.|+
T Consensus 1 v~i~nlp~~-~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPS-TTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT---HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999995 9999999999999999999999874 7999999999999999999998 89999885
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.5e-10 Score=90.22 Aligned_cols=54 Identities=35% Similarity=0.491 Sum_probs=50.8
Q ss_pred HHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 194 LLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 194 L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
|.++|++||.|.+|.+.+++ ++|||+|.+.++|..|++.++| .++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999999988 9999999999999999999999 899999999996
No 54
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=5e-10 Score=89.55 Aligned_cols=66 Identities=36% Similarity=0.626 Sum_probs=62.1
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
+|||+|||.. +++++|+++|.+||.|..+.+..++ ++|||+|.+.++|..|+..+++ .+.|+.|+|
T Consensus 1 ~v~i~~l~~~-~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPD-VTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCc-CCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999995 9999999999999999999999876 8999999999999999999998 799999887
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.07 E-value=3.4e-10 Score=123.86 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=114.6
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcc---
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPST--- 158 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~--- 158 (634)
.+-+++.++-+|..+|.|.++..+++-.++.++|||||+|.+.++| +|+..|||.+|-||.|+|..-..+-.....
T Consensus 288 fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~ 367 (549)
T KOG0147|consen 288 FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVT 367 (549)
T ss_pred cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccccc
Confidence 3456677777777777777777777776778899999999999999 999999999999999998643322100000
Q ss_pred --------------cc-------------------------------------ccccccccC-CCC------CCCCCEEE
Q 048615 159 --------------KA-------------------------------------QNDHMRNIR-KPS------QKALRTLF 180 (634)
Q Consensus 159 --------------~~-------------------------------------~~d~~~~~~-~~s------~~~~~tLf 180 (634)
.. .....+... -|. ..+...+.
T Consensus 368 ~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~l 447 (549)
T KOG0147|consen 368 QFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLL 447 (549)
T ss_pred ccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHH
Confidence 00 000000000 000 01122233
Q ss_pred EeCC-CCCC-----CC---HHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 181 VNNV-PLKS-----NR---REALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 181 VgnL-p~d~-----~t---e~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+.|+ .+.. ++ .+++.+-+.+||.|..|.|.++. ||.||.|.+.+.|..|+.+|+| .|.||.|...|-.
T Consensus 448 L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 448 LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 3333 1100 11 35566777999999999999887 8999999999999999999999 8999999999874
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=6.8e-10 Score=106.90 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC---CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS---ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk---g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
..++|||+|||.+ +.+.+|.++|.+||.|..|.+...+ .||||+|++..+|+.||..-+| .++|..|+|.|++..
T Consensus 5 ~~~~iyvGNLP~d-iRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGD-IREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcc-hhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3689999999997 9999999999999999999876543 5999999999999999999999 799999999999765
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
+.
T Consensus 84 r~ 85 (241)
T KOG0105|consen 84 RS 85 (241)
T ss_pred Cc
Confidence 43
No 57
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-10 Score=113.38 Aligned_cols=77 Identities=31% Similarity=0.483 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++||||+|..+ +++.-|...|-+||.|.+|.++.| ++||||+|...++|.+||..||+ .|.||.|+|++|+
T Consensus 10 KrtlYVGGlade-VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADE-VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHH-HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 589999999997 999999999999999999999875 57999999999999999999999 8999999999999
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
|.+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87764
No 58
>PLN03213 repressor of silencing 3; Provisional
Probab=99.00 E-value=8.6e-10 Score=118.78 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC--CCeEEEEeCCH--HHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SERAFVQFSKR--EEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d--kg~AFV~F~s~--e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
..+||||||+++ +++++|+.+|+.||.|.+|.|++. ++||||+|... .++.+||..|+| .++||.|+|.-|++
T Consensus 10 gMRIYVGNLSyd-VTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGES-VGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 579999999996 999999999999999999999975 47999999987 789999999999 89999999999964
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3e-09 Score=85.48 Aligned_cols=68 Identities=37% Similarity=0.569 Sum_probs=63.2
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+|+|+|||.. +++++|+++|..||.|..+.+..+ .++|||+|.+.++|..|+..+++ .++|+.|.|.|
T Consensus 1 ~i~i~~l~~~-~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPD-VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCc-cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999995 999999999999999999999886 47999999999999999999999 69999999976
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=113.09 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=72.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC--ccCCeEEEEEee
Q 048615 170 KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA--VMGNRFIKLWWA 247 (634)
Q Consensus 170 ~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng--~l~gR~IkV~wa 247 (634)
+|.+...++|||++|-.. +++.+|++||.+||+|..|++...++||||+|.++++|+.|....-. +|+|++|+|.|+
T Consensus 222 pPeD~~I~tLyIg~l~d~-v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDE-VLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCcccceeEEEecccccc-hhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 345566789999999885 99999999999999999999999999999999999999999987655 799999999999
Q ss_pred cC
Q 048615 248 NR 249 (634)
Q Consensus 248 k~ 249 (634)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 61
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.96 E-value=2.2e-09 Score=108.42 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC---CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS---ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk---g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..+|||+||++. +++++|+++|+.||.|.+|+|+++. +||||+|.+.++|+.|+ .|+| .|.+++|.|.-.
T Consensus 5 g~TV~V~NLS~~-tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPK-ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCC-CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 479999999995 9999999999999999999999975 59999999999999999 5777 899999998754
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.94 E-value=1.3e-09 Score=103.45 Aligned_cols=81 Identities=9% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+.+.|+| +....+++.+..+|.++|.|..+.+++++.++.++|||||+|.+.++| .||..|||..|.||+|+|.++..
T Consensus 35 ~~lfVgn-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 35 TKLFIGG-LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CEEEEeC-CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 3345555 566778999999999999999888888888888899999999999999 99999999999999999999986
Q ss_pred cCC
Q 048615 152 KNM 154 (634)
Q Consensus 152 k~~ 154 (634)
+..
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 653
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=105.11 Aligned_cols=73 Identities=32% Similarity=0.445 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|.+||.|..|.|..++ +||||+|.+.++|..|+..+++ .|.||.|+|.++.
T Consensus 115 ~~~l~v~nL~~~-~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYD-VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCC-CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999996 9999999999999999999998875 7999999999999999999998 8999999999986
Q ss_pred C
Q 048615 249 R 249 (634)
Q Consensus 249 ~ 249 (634)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=5.6e-09 Score=92.17 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC---CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN---SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d---kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
-++-|||.|||++ ++.+++-++|.+||.|..|+|-.. +|-|||.|++..+|.+|+..|.| .+++|.+.|-|-.
T Consensus 17 vnriLyirNLp~~-ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFK-ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCcc-ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4689999999995 999999999999999999999775 47999999999999999999999 7999999998764
No 65
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.90 E-value=1e-08 Score=108.83 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=122.3
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccc
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQ 161 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~ 161 (634)
..-+.+.++.+||-+|+|..+++...|.+ -|.|.+.+...| -|+..|+|.+|.|++|||.+++......+....
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 34567788999999999888888776643 588999999999 999999999999999999988765421111000
Q ss_pred cc------c-----ccccCC------CCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec--CCCeEEEEeCC
Q 048615 162 ND------H-----MRNIRK------PSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSK 222 (634)
Q Consensus 162 ~d------~-----~~~~~~------~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~--dkg~AFV~F~s 222 (634)
.| . .+..++ .--++..+|.+.|||. ++++++|+.+|..-|..++..... ++.+|++++.+
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~-svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~s 461 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPP-SVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLES 461 (492)
T ss_pred ccccccccCCCCchhhccCcccccccccCCchhheeeccCCc-ccchhHHHHhhhcCCceEEeeeecCCCcceeecccCC
Confidence 00 0 000000 0113456999999999 599999999999999887765543 66799999999
Q ss_pred HHHHHHHHHcCCC-ccC-CeEEEEEeecC
Q 048615 223 REEAEAALKSPDA-VMG-NRFIKLWWANR 249 (634)
Q Consensus 223 ~e~A~~Ai~~lng-~l~-gR~IkV~wak~ 249 (634)
.++|..|+..++. .++ +..|||+|.+.
T Consensus 462 veeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 462 VEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999987 555 56899999873
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4.9e-09 Score=107.50 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+-+||||+-|+++ ++|..|+..|++||.|..|+|+.++ |||||+|.+..+...|++..+| .|+||.|-|++-
T Consensus 100 Py~TLFv~RLnyd-T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 100 PYKTLFVARLNYD-TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred ccceeeeeecccc-ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4689999999997 9999999999999999999999974 7999999999999999999999 899999999998
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
+...
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6443
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=2.8e-09 Score=98.03 Aligned_cols=72 Identities=22% Similarity=0.393 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.--|||.++..+ .+++++.+.|..||+|.+|.+..|+ |||+|+|.+.++|++|+..+|| .|.|..|.|+|+-
T Consensus 72 GwIi~VtgvHeE-atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEE-ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcc-hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 458999999997 9999999999999999999998875 6999999999999999999999 8999999999994
No 68
>smart00360 RRM RNA recognition motif.
Probab=98.88 E-value=5.8e-09 Score=82.88 Aligned_cols=64 Identities=31% Similarity=0.480 Sum_probs=58.3
Q ss_pred EeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 181 VNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 181 VgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
|+|||.. +++++|+.+|++||.|..+.+..++ ++|||+|.+.++|..|+..+++ .++|+.|+|.
T Consensus 1 i~~l~~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPD-VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcc-cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789995 9999999999999999999998864 5999999999999999999998 7899998873
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.87 E-value=2.3e-07 Score=99.27 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=108.0
Q ss_pred eecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC---------CC---------
Q 048615 96 RIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM---------DP--------- 156 (634)
Q Consensus 96 ~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~---------~~--------- 156 (634)
++|+|..+...-+. +++.+|+|.|+|+++|.+ +|+..||...+.||+|.|+.-..... ..
T Consensus 68 kvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~ 146 (608)
T KOG4212|consen 68 KVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGV 146 (608)
T ss_pred hcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcce
Confidence 44556555444444 346799999999999999 99999999999999999974433110 00
Q ss_pred ------------------cccccccccccc----------------------------C---CCCCCCCCEEEEeCCCCC
Q 048615 157 ------------------STKAQNDHMRNI----------------------------R---KPSQKALRTLFVNNVPLK 187 (634)
Q Consensus 157 ------------------~~~~~~d~~~~~----------------------------~---~~s~~~~~tLfVgnLp~d 187 (634)
+.....|.++.. + .-.++-..++||.||.+.
T Consensus 147 q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~ 226 (608)
T KOG4212|consen 147 QGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYK 226 (608)
T ss_pred ecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccc
Confidence 000000100000 0 012233568999999995
Q ss_pred CCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 188 SNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 188 ~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+....|.+.|.--|.|..|.+-.|+ +|+.|+|+++-+|-.||..+++ -+..|+..+...
T Consensus 227 -vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 227 -VGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred -cchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9999999999999999998877665 6999999999999999999987 566777777664
No 70
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.87 E-value=8.7e-09 Score=111.76 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=115.6
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....|+.++..+|+-++ |.+. +-.+.+++.+|-|||+|.+.|++ +|++ .+-..+.-|.|.|..+.........+
T Consensus 18 LPwsat~~ei~~Ff~~~~-I~~~--~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNCG-IENL--EIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMR 93 (510)
T ss_pred CCccccHHHHHHHHhcCc-eeEE--EEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcccccccc
Confidence 345678888888886554 3333 34455567799999999999999 9995 48888999999999887655432222
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE-EEEecCC-----CeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVD-IYIPLNS-----ERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~-v~v~~dk-----g~AFV~F~s~e~A~~Ai~~l 233 (634)
..+.. +......|.+++||+ .|++++|.++|+..=-|.+ |.++.++ +-|||+|++.+.|++|+...
T Consensus 94 ~~g~~-------s~~~d~vVRLRGLPf-scte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 94 PGGPN-------SSANDGVVRLRGLPF-SCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred CCCCC-------CCCCCceEEecCCCc-cCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 21111 112357899999999 5999999999998743333 3344443 47999999999999999887
Q ss_pred CCccCCeEEEEEee
Q 048615 234 DAVMGNRFIKLWWA 247 (634)
Q Consensus 234 ng~l~gR~IkV~wa 247 (634)
.-.|+.|.|.|+-+
T Consensus 166 re~iGhRYIEvF~S 179 (510)
T KOG4211|consen 166 RENIGHRYIEVFRS 179 (510)
T ss_pred HHhhccceEEeehh
Confidence 77899999999887
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.7e-09 Score=103.98 Aligned_cols=72 Identities=18% Similarity=0.349 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+.-|||||||++ +||.+|..+|++||+|++|.+++|+ ||||..|++-.+-..|+..+|| .|.||.|+|+-..
T Consensus 35 sA~Iyiggl~~~-LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYE-LTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCccc-ccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 468999999997 9999999999999999999999986 6999999999999999999999 7999999998653
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.75 E-value=2.8e-08 Score=98.88 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=101.8
Q ss_pred CcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc-
Q 048615 74 DLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ- 151 (634)
Q Consensus 74 ~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~- 151 (634)
.+.|+| +....+.+.+..+|..+|.+..+..+.++..+.++|||||+|.+.++| .|+..|+|..|.||+|+|.+...
T Consensus 117 ~l~v~n-L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 117 TLFVGN-LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred eEEEeC-CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 334444 556788899999999999987777777777778899999999999999 99999999999999999999653
Q ss_pred ---cCCCCcc--ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC
Q 048615 152 ---KNMDPST--KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS 213 (634)
Q Consensus 152 ---k~~~~~~--~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk 213 (634)
+...... ....................+++.+++.. +....+..+|..+|.+..+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 196 SQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLK-TAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccccccchhhhccccccccccccccceeeccccccc-cchhHHHHhccccccceeeeccCCC
Confidence 1111100 00000000011112244689999999995 9999999999999999777766554
No 73
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.74 E-value=1.6e-08 Score=111.04 Aligned_cols=75 Identities=25% Similarity=0.467 Sum_probs=70.4
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
+.|||||||++ +++++|..+|+..|.|.+++++.|+ ||||++|.+.++|..|++.||| .++||+|+|.|+..
T Consensus 19 ~~v~vgnip~~-~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYE-GSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCc-ccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999996 9999999999999999999999885 6999999999999999999999 89999999999965
Q ss_pred CCC
Q 048615 250 DSI 252 (634)
Q Consensus 250 ~~~ 252 (634)
+..
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 544
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=1.4e-08 Score=114.67 Aligned_cols=74 Identities=30% Similarity=0.520 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
.+|||||+|+. ++++.+|.++|+.||.|.+|.++..++||||.+..+.+|.+|+++|.. .+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k-~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPK-NVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccc-hhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 58999999999 599999999999999999999999999999999999999999999998 699999999999543
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=5.2e-09 Score=102.45 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
++.-++-+++.-||.++|.|..+.|+.++.+..++|||||-|..+.+| +|+..|+|.+|+||.|+|++|.-.
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 666788999999999999999999999999999999999999999999 999999999999999999988643
No 76
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.70 E-value=1.5e-08 Score=97.74 Aligned_cols=72 Identities=31% Similarity=0.383 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
..||||+||+.. ++++.|.++|-+.|.|++++|++++ |||||+|.++++|+-|++-|+. .|-||+|+|.-+.
T Consensus 9 d~tiyvgnld~k-vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEK-VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHH-HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 469999999995 9999999999999999999999865 7999999999999999999998 6999999999764
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.69 E-value=9.4e-08 Score=101.61 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=118.4
Q ss_pred ccccccccceeeecceeeeeccccccCCCcCce-EEEEcCCHHHH-HHHhccCCceeCCEE--EEEccCcc---------
Q 048615 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSL-DYLENETKEDR-EALPSLQGSYRRGKR--IIEGDAIQ--------- 151 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~Gf-gFVeF~~~e~A-~Ai~~mnG~~l~GR~--I~V~~a~~--------- 151 (634)
-|.|-+..+|.++|-|..+.- -+| ..|| |.|.|.+.+.| .|-..|+|+.|.... +||+++.-
T Consensus 162 VslDVLHqvFS~fG~VlKIiT-F~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynn 236 (492)
T KOG1190|consen 162 VSLDVLHQVFSKFGFVLKIIT-FTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNN 236 (492)
T ss_pred eEHHHHHHHHhhcceeEEEEE-Eec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccc
Confidence 567778888999997665411 122 2565 89999999999 999999999886543 55654432
Q ss_pred -cCCC--Cccccccc---------------------------------cccccCCCCCC-CCCEEEEeCCCCCCCCHHHH
Q 048615 152 -KNMD--PSTKAQND---------------------------------HMRNIRKPSQK-ALRTLFVNNVPLKSNRREAL 194 (634)
Q Consensus 152 -k~~~--~~~~~~~d---------------------------------~~~~~~~~s~~-~~~tLfVgnLp~d~~te~~L 194 (634)
|+.. .+.-..++ .... ++...+ .++.|.|.||..+.+|.+.|
T Consensus 237 dkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~-~~~~~~~~n~vllvsnln~~~VT~d~L 315 (492)
T KOG1190|consen 237 DKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAAD-GKIESPSANVVLLVSNLNEEAVTPDVL 315 (492)
T ss_pred cccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccc-cccccCCCceEEEEecCchhccchhHH
Confidence 2210 00000000 0000 111111 27899999999888999999
Q ss_pred HHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCCC
Q 048615 195 LSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSIP 253 (634)
Q Consensus 195 ~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~~ 253 (634)
..+|+-||.|.+|.|..++ .-|+|+|.+...|+.|+..|+| .+.|+.|+|.+.|....+
T Consensus 316 ftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 316 FTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred HHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 9999999999999999876 4899999999999999999999 799999999999866543
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=4.6e-08 Score=96.87 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=102.9
Q ss_pred ccccccccccceeeecceeeeec-cccccCCCcCceEEEEcCCHHHH-HHHhccCCceeC---CEEEEEccCcccCC---
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSN-VKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRR---GKRIIEGDAIQKNM--- 154 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~-~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~---GR~I~V~~a~~k~~--- 154 (634)
.+.--.++..+|.++-+...+.. +..|.+...+-+|||.|.+..+| .|+..|||..|+ +..+++..+++...
T Consensus 44 ~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 44 NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKR 123 (284)
T ss_pred cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccccc
Confidence 34455667778877755443322 12222223457999999999999 999999999996 56788887764321
Q ss_pred ----C-Ccc-c----------cc---------c--c-----------c----cc-----------------------ccC
Q 048615 155 ----D-PST-K----------AQ---------N--D-----------H----MR-----------------------NIR 169 (634)
Q Consensus 155 ----~-~~~-~----------~~---------~--d-----------~----~~-----------------------~~~ 169 (634)
. +.. . .. + + . .. ...
T Consensus 124 ~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~ 203 (284)
T KOG1457|consen 124 RKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQG 203 (284)
T ss_pred CCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcc
Confidence 0 000 0 00 0 0 0 00 001
Q ss_pred CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCC--eEEEEeCCHHHHHHHHHcCCC
Q 048615 170 KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE--RAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 170 ~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg--~AFV~F~s~e~A~~Ai~~lng 235 (634)
....+...||||.||.++ ++|++|+.+|+.|-....++|....| .|||+|++.+.|..||..++|
T Consensus 204 ~~~~~acstlfianl~~~-~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 204 GSGARACSTLFIANLGPN-CTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cccchhhhhHhhhccCCC-CCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 122244679999999995 99999999999998777666644333 899999999999999999988
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.68 E-value=1.7e-07 Score=96.32 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccCCce
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQGHD 542 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~g~~ 542 (634)
.++|+| ++||...+ +++|++||..||+|.+|++..+.. ..+++||+|.+..+|+.|+. +|..|.|+.
T Consensus 4 ~rtVfV-gNLs~~tT-E~dLrefFS~~G~I~~V~I~~d~~----------~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKV-SNVSLKAT-ERDIKEFFSFSGDIEYVEMQSENE----------RSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeecCC----------CCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 579999 89999987 999999999999999999975431 13799999999999999985 599999999
Q ss_pred eEEEEeCCCC
Q 048615 543 LQFTWLMPSS 552 (634)
Q Consensus 543 l~l~W~~~~~ 552 (634)
|++.|.....
T Consensus 72 V~Vt~a~~~~ 81 (260)
T PLN03120 72 VTITPAEDYQ 81 (260)
T ss_pred EEEEeccCCC
Confidence 9999977543
No 80
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=3.7e-08 Score=100.86 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=66.2
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
.+|||||||.+ .++.+|+.+|++||+|++|.|+++ ||||..++...|+.||+.|+| .|+|..|.|.-++..
T Consensus 3 ~KLFIGNLp~~-~~~~elr~lFe~ygkVlECDIvKN--YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPRE-ATEQELRSLFEQYGKVLECDIVKN--YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcc-cchHHHHHHHHhhCceEeeeeecc--cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999996 999999999999999999999976 999999999999999999999 899999999977644
No 81
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.63 E-value=6.1e-08 Score=78.52 Aligned_cols=68 Identities=22% Similarity=0.434 Sum_probs=57.9
Q ss_pred EEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCceeE
Q 048615 467 FRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGHDLQ 544 (634)
Q Consensus 467 l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~~l~ 544 (634)
|+| ++||.+++ +++|+++|.+||.|.+|.+.... ......+|+|+|.++.+|++|+. +|..|.|+.|+
T Consensus 1 l~v-~nlp~~~t-~~~l~~~f~~~g~i~~~~~~~~~--------~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYV-GNLPPDVT-EEELRDFFSQFGKIESIKVMRNS--------SGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEE-ESETTTSS-HHHHHHHHHTTSTEEEEEEEEET--------TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEE-cCCCCcCC-HHHHHHHHHHhhhcccccccccc--------cccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 678 89999998 99999999999999999988751 11123899999999999999996 59999998875
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.62 E-value=2.7e-07 Score=96.54 Aligned_cols=170 Identities=17% Similarity=0.132 Sum_probs=121.4
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccc---------cCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEE
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEK---------IDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRI 144 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k---------~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I 144 (634)
++| +++..+-|.+.+..+|.+.|- +++++.+. -.|+.+|=|.+.|-..|++ -|+..|++..|.|+.|
T Consensus 137 VYV-sgLP~DiT~dE~~~~~sKcGi--I~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 137 VYV-SGLPLDITVDEFAEVMSKCGI--IMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred EEe-cCCCCcccHHHHHHHHHhcce--EeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 344 336677888888888888774 33343222 1367899999999999999 9999999999999999
Q ss_pred EEccCcccCCC---C-------c----------cccccccccccCCCCCCCCCEEEEeCCC--CCC-CC-------HHHH
Q 048615 145 IEGDAIQKNMD---P-------S----------TKAQNDHMRNIRKPSQKALRTLFVNNVP--LKS-NR-------REAL 194 (634)
Q Consensus 145 ~V~~a~~k~~~---~-------~----------~~~~~d~~~~~~~~s~~~~~tLfVgnLp--~d~-~t-------e~~L 194 (634)
+|..|.-.... . . .+.....+...+....+..++|.+.|+= .+. -+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99887532210 0 0 0011112111222334567899999972 111 12 3556
Q ss_pred HHhhccCCCEEEEEEe--cCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 195 LSHFQKFGEVVDIYIP--LNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 195 ~~~FskfG~I~~v~v~--~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
++-.++||.|.+|.|. ...|.+.|.|.+.++|..||+.|+| .|+||.|..+..
T Consensus 294 ~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 6779999999999886 3448999999999999999999999 899999998765
No 83
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=2.3e-08 Score=104.70 Aligned_cols=69 Identities=25% Similarity=0.479 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
.|+||||.|.++ +.|+.||..|..||.|.+|.|..| ++||||+|+-++.|..|++.||| +++||.|+|.
T Consensus 113 McRvYVGSIsfE-l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFE-LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEE-echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 589999999997 999999999999999999999875 47999999999999999999999 8999999997
No 84
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.58 E-value=9.2e-08 Score=75.54 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=44.7
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF 532 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~ 532 (634)
+|.|.|+|..|. +.+.++.||.+||+|..+.+.+.. ++++|+|.+|.+||+|+
T Consensus 1 ~~wI~V~Gf~~~---~~~~vl~~F~~fGeI~~~~~~~~~-------------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPD---LAEEVLEHFASFGEIVDIYVPEST-------------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECch---HHHHHHHHHHhcCCEEEEEcCCCC-------------cEEEEEECCHHHHHhhC
Confidence 588999866433 256888899999999999998655 79999999999999995
No 85
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=1.3e-07 Score=94.26 Aligned_cols=76 Identities=30% Similarity=0.467 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCCCCCHHHHHH----hhccCCCEEEEEEecC---CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALLS----HFQKFGEVVDIYIPLN---SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~----~FskfG~I~~v~v~~d---kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
++.||||.||+.. +..++|+. +|++||.|.+|.+... +|.|||.|.+.+.|..|+.+|+| .+-|++++|.|
T Consensus 8 pn~TlYInnLnek-I~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEK-IKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhcccc-ccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3559999999995 99999998 9999999999988754 58999999999999999999999 79999999999
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
|+.+.
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98654
No 86
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.54 E-value=2.7e-07 Score=72.80 Aligned_cols=54 Identities=20% Similarity=0.452 Sum_probs=48.1
Q ss_pred HHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCceeEEEEe
Q 048615 483 LKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGHDLQFTWL 548 (634)
Q Consensus 483 L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~~l~l~W~ 548 (634)
|+++|..||+|..|.+.+.. .++++|+|.++.+|++|+. +|..|.|++|++.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 2799999999999999986 799999999999994
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=1.9e-07 Score=94.23 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=129.5
Q ss_pred hhhcccCC-----CCCccccccCCCCCCccccccCCCCCCcccccCCCccccccccccceeeecceeeeeccccccCCCc
Q 048615 40 GLAALHSS-----NDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATL 114 (634)
Q Consensus 40 ~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s 114 (634)
...+-+++ .|+.+.++--+ -+||..|++..... | + .....-+..+|+.+-..+..+.++.... ..
T Consensus 70 ~v~tav~~~s~~a~~~~Pt~l~~~-P~vf~p~~~~~g~~---v-~----pep~lp~~~~f~~~p~L~ktk~v~~~p~-~~ 139 (290)
T KOG0226|consen 70 RVKTAVGRKSAPAVWADPTLLAPA-PAVFRPFQSNAGAT---V-N----PEPPLPLPVVFSEYPSLVKTKLVRDRPQ-PI 139 (290)
T ss_pred hhhhhccccccccccCCCccCCCC-cccccccccccccc---c-C----CCCCCcchhhhccchhhhhhhhhhcCCC-cc
Confidence 34444555 88888877544 46777776655321 1 0 1112334566666655555545555444 45
Q ss_pred CceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHH
Q 048615 115 NSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREA 193 (634)
Q Consensus 115 ~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~ 193 (634)
.+++|+.|.....- ++-..-+++.+.-++|+.........+.-... .....+||+|.|.-+ ++++.
T Consensus 140 ~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew------------~~~DfRIfcgdlgNe-vnd~v 206 (290)
T KOG0226|consen 140 RPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEW------------DEDDFRIFCGDLGNE-VNDDV 206 (290)
T ss_pred CcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccC------------ccccceeeccccccc-ccHHH
Confidence 89999999987666 78877788888887777765544332211110 112469999999997 99999
Q ss_pred HHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 194 LLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 194 L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
|...|.+|-.....++++++ +|+||.|.+.+++..|++.|+| .+++|+|++.
T Consensus 207 l~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 207 LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 99999999988888888875 6999999999999999999999 8999999875
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=1.6e-07 Score=94.01 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=61.4
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCcc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSW 538 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~ 538 (634)
-|-+=|+|+| |+|+=+-. .+.||.||++||||...++.-++. ..-|+ +.+||||+++.+|+||... ...|
T Consensus 8 ~DT~~TKifV-ggL~w~T~-~~~l~~yFeqfGeI~eavvitd~~------t~rsk-GyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 8 GDTTFTKIFV-GGLAWETH-KETLRRYFEQFGEIVEAVVITDKN------TGRSK-GYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred CCceEEEEEE-cCcccccc-hHHHHHHHHHhCceEEEEEEeccC------Ccccc-ceeeEEeecHHHHHHHhcCCCCcc
Confidence 4888899999 99998776 899999999999998776654431 22345 7999999999999999987 5577
Q ss_pred CCceeEE
Q 048615 539 QGHDLQF 545 (634)
Q Consensus 539 ~g~~l~l 545 (634)
.|++.+.
T Consensus 79 dGR~aNc 85 (247)
T KOG0149|consen 79 DGRKANC 85 (247)
T ss_pred ccccccc
Confidence 8855443
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=98.53 E-value=2.2e-07 Score=77.12 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=47.3
Q ss_pred HHHHHHhhc----cCCCEEEEE-EecC--------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 191 REALLSHFQ----KFGEVVDIY-IPLN--------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 191 e~~L~~~Fs----kfG~I~~v~-v~~d--------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
+++|+++|+ +||.|.+|. |..+ +|||||+|.+.++|.+|+..|+| .++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568889998 999999985 4332 46999999999999999999999 899999986
No 90
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.2e-07 Score=99.25 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
++...|||..|.+ -+++++|.-+|+.||.|.+|.|++|+ .||||+|.+.++.++|+-.|++ .|+.|.|.|+|
T Consensus 237 PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4567999999999 48999999999999999999999987 3999999999999999999999 69999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
...
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 854
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.8e-07 Score=103.78 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=109.8
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCc--cc---
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPS--TK--- 159 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~--~~--- 159 (634)
...++-..||.+.....+.+..+ +-++||||-+|.+..-. .|+..|||..++++++.|..+........ ..
T Consensus 305 q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~ 381 (500)
T KOG0120|consen 305 QVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQ 381 (500)
T ss_pred HHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccc
Confidence 34445566766666665555444 45699999999999999 99999999999999999998875442111 01
Q ss_pred -cccccccccCCCCCCCCCEEEEeCC--CCCCCCH-------HHHHHhhccCCCEEEEEEecC-C--------CeEEEEe
Q 048615 160 -AQNDHMRNIRKPSQKALRTLFVNNV--PLKSNRR-------EALLSHFQKFGEVVDIYIPLN-S--------ERAFVQF 220 (634)
Q Consensus 160 -~~~d~~~~~~~~s~~~~~tLfVgnL--p~d~~te-------~~L~~~FskfG~I~~v~v~~d-k--------g~AFV~F 220 (634)
...............+...|.+-|+ |.+..++ ++++.-+++||.|..|.|+++ . |..||+|
T Consensus 382 ~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVef 461 (500)
T KOG0120|consen 382 SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEF 461 (500)
T ss_pred cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEe
Confidence 0000000000111122233433342 2222222 345667889999999999876 2 5899999
Q ss_pred CCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 221 SKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 221 ~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
.+.+++++|+..|.| .++||.+.+.|.-++.
T Consensus 462 as~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 462 ADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred cChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 999999999999999 8999999999985543
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=9.9e-08 Score=95.78 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=70.9
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+.|.|.| ++-+..++.+..+|.+||.+..+...++|.++.++|||||.|.+.++| +||..|||.-++.--|+|.|+.+
T Consensus 190 ~tvRvtN-Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 190 ATVRVTN-LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ceeEEec-CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 4556655 677788888999999999999888899999999999999999999999 99999999999999999999986
Q ss_pred c
Q 048615 152 K 152 (634)
Q Consensus 152 k 152 (634)
+
T Consensus 269 ~ 269 (270)
T KOG0122|consen 269 S 269 (270)
T ss_pred C
Confidence 5
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=98.48 E-value=1.9e-07 Score=77.52 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=41.6
Q ss_pred ceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEc
Q 048615 93 VWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEG 147 (634)
Q Consensus 93 vfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~ 147 (634)
.||.|+.|..+...+....+.++|||||.|.+.++| +|+..|||..+.||.|++.
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 566666664222222222256799999999999999 9999999999999999873
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.4e-08 Score=95.59 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred ecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 97 IGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 97 Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+|+|..+.++.+-.+.++||||||+|...|+| .||..||+.+|.||.|+|+++.+..
T Consensus 34 FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 34 FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 35555555666677788899999999999999 9999999999999999999998755
No 95
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.45 E-value=6.5e-06 Score=86.45 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--------EEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--------IYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGN 239 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--------v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~g 239 (634)
.-++.|||.|||.+ +|.+++.++|++||-|.. |.+.++. |=|++.|...++...|++.|++ .|.|
T Consensus 132 ~~Nt~VYVsgLP~D-iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLD-ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCc-ccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34788999999998 999999999999998873 5555543 5699999999999999999999 8999
Q ss_pred eEEEEEeecCCCC
Q 048615 240 RFIKLWWANRDSI 252 (634)
Q Consensus 240 R~IkV~wak~~~~ 252 (634)
+.|+|.-|+.+..
T Consensus 211 ~~~rVerAkfq~K 223 (382)
T KOG1548|consen 211 KKLRVERAKFQMK 223 (382)
T ss_pred cEEEEehhhhhhc
Confidence 9999999876554
No 96
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.6e-07 Score=97.69 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCcccccCCCcc-ccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 73 NDLPVRNAGTAA-VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 73 ~~~~v~n~~~~~-~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
+-++|.| ++| .-+-+++.||+++|.|..+-++-..++ |||||||.|++.+|| +|-.+|+|+++.||+|.|+.+.
T Consensus 97 kRLhVSN--IPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 97 KRLHVSN--IPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred ceeEeec--CCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4456665 444 333446677666666555555533332 599999999999999 9999999999999999999887
Q ss_pred ccC
Q 048615 151 QKN 153 (634)
Q Consensus 151 ~k~ 153 (634)
.+-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 653
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.37 E-value=3.4e-06 Score=85.67 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccCC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQG 540 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~g 540 (634)
+...+|+| ++|+...+ +++|+++|..||+|++|+|..+.. . .+.+||+|+++.+||.|+. +|..|.|
T Consensus 3 ~~g~TV~V-~NLS~~tT-E~dLrefFS~~G~I~~V~I~~D~e--t--------~gfAfVtF~d~~aaetAllLnGa~l~d 70 (243)
T PLN03121 3 PGGYTAEV-TNLSPKAT-EKDVYDFFSHCGAIEHVEIIRSGE--Y--------ACTAYVTFKDAYALETAVLLSGATIVD 70 (243)
T ss_pred CCceEEEE-ecCCCCCC-HHHHHHHHHhcCCeEEEEEecCCC--c--------ceEEEEEECCHHHHHHHHhcCCCeeCC
Confidence 45678999 89999998 999999999999999999986631 1 2689999999999999984 6999999
Q ss_pred ceeEEE-EeC
Q 048615 541 HDLQFT-WLM 549 (634)
Q Consensus 541 ~~l~l~-W~~ 549 (634)
+.|.|. |..
T Consensus 71 ~~I~It~~~~ 80 (243)
T PLN03121 71 QRVCITRWGQ 80 (243)
T ss_pred ceEEEEeCcc
Confidence 999987 543
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=1.1e-05 Score=89.67 Aligned_cols=136 Identities=12% Similarity=0.175 Sum_probs=102.0
Q ss_pred CceEEEEcCCHHHHHHHhccCCceeCCEEEEEccCcccCCCCcccc----ccccccccCCC-CCCCCCEEEEeCCCCCCC
Q 048615 115 NSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA----QNDHMRNIRKP-SQKALRTLFVNNVPLKSN 189 (634)
Q Consensus 115 ~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~----~~d~~~~~~~~-s~~~~~tLfVgnLp~d~~ 189 (634)
..|+|++|.+.++|.+...+++..+.|+++++.........+..-. .......+..+ ..-...++||++||. ++
T Consensus 223 ~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~-~l 301 (500)
T KOG0120|consen 223 KNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPL-YL 301 (500)
T ss_pred ccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcC-cc
Confidence 6899999999999944447899999999998875554432211100 00001111111 112356899999999 69
Q ss_pred CHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 190 RREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 190 te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
++.+++++...||.+....++.+ ++|||.+|.+..-...|+..+|| .+++.+|.|..|-.+.
T Consensus 302 ~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 302 TEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred CHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999998877764 47999999999999999999999 6899999999886443
No 99
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=2.3e-07 Score=84.96 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=68.6
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.+.+|+| ++...+++.+..+|.+.|+|+.+..--++.+.+.=|||||+|...++| .||.-+||+.|+.|+|+|+|--
T Consensus 37 ~tvyVgN-lSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 37 CTVYVGN-LSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred ceEEEee-eeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4556777 778899999999999999999887777777777789999999999999 9999999999999999999764
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=98.31 E-value=3.7e-07 Score=98.91 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=60.1
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCH--HHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETK--EDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~--e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
+|+| +....+++.+..+|..+|.|..+.+++++ + ||||||+|... .++ +||..|||..|.||.|+|+.|.+.
T Consensus 14 YVGN-LSydVTEDDLravFSeFGsVkdVEIpRET--G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 14 HVGG-LGESVGRDDLLKIFSPMGTVDAVEFVRTK--G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred EEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeccc--C--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4444 45567888999999999999999888443 2 89999999987 456 999999999999999999988754
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=7e-07 Score=102.76 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=116.1
Q ss_pred ccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccc
Q 048615 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQND 163 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d 163 (634)
.++..++-.|+..|-|..+ +|+...-++-+.||||.|.+...+ .|..+|.|..|.-..+++.+...+.
T Consensus 384 l~eseiR~af~e~gkve~V-DiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ks---------- 452 (975)
T KOG0112|consen 384 LTESEIRPAFDESGKVEEV-DIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKS---------- 452 (975)
T ss_pred hhhhhhhhhhhhhcccccc-ccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccccc----------
Confidence 4566677778887765554 566654445578999999999999 9999999987766666655443211
Q ss_pred cccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCC--e
Q 048615 164 HMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGN--R 240 (634)
Q Consensus 164 ~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~g--R 240 (634)
...+.+||++|+. |+....|...|..||.|..|.+....-||||.|.+...|+.|+..|-| -|++ +
T Consensus 453 ----------t~ttr~~sgglg~-w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 453 ----------TPTTRLQSGGLGP-WSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ----------ccceeeccCCCCC-CChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 1257999999999 899999999999999999988766666999999999999999999999 5664 7
Q ss_pred EEEEEeecCCCC
Q 048615 241 FIKLWWANRDSI 252 (634)
Q Consensus 241 ~IkV~wak~~~~ 252 (634)
.|+|.|+.....
T Consensus 522 r~rvdla~~~~~ 533 (975)
T KOG0112|consen 522 RLRVDLASPPGA 533 (975)
T ss_pred ccccccccCCCC
Confidence 899999975544
No 102
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.27 E-value=1.2e-06 Score=94.00 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+..|+|||.|||++ +||..|++-|..||.|..+.|+.+ +..+.|.|.++++|+.|+..|+| .++||.|+|.|.
T Consensus 534 rKa~qIiirNlP~d-fTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFD-FTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCcc-ccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 44689999999996 999999999999999999988442 34679999999999999999999 899999999874
No 103
>smart00360 RRM RNA recognition motif.
Probab=98.25 E-value=1.2e-06 Score=69.40 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=53.3
Q ss_pred cccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEc
Q 048615 84 AVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEG 147 (634)
Q Consensus 84 ~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~ 147 (634)
..+.+.+..+|..+|.+..+.....+.++.++|||||+|.+.++| .|+..|+|..+.|+.|+|.
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 346667778888888777776666665667799999999999999 9999999999999999874
No 104
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.24 E-value=2e-05 Score=86.86 Aligned_cols=74 Identities=26% Similarity=0.342 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..+.|||.+|.. .+...+|+.+|++||.|+-..|+.+- .|+||++.+.++|.+||..|+. .|.||.|.|.-+
T Consensus 404 ~gRNlWVSGLSs-tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSS-TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecccc-chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 357999999999 58899999999999999999988753 4999999999999999999998 899999999988
Q ss_pred cC
Q 048615 248 NR 249 (634)
Q Consensus 248 k~ 249 (634)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=98.22 E-value=5.5e-06 Score=65.86 Aligned_cols=69 Identities=26% Similarity=0.395 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCcee
Q 048615 466 AFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGHDL 543 (634)
Q Consensus 466 ~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~~l 543 (634)
+|+| ++||...+ .++|+++|.+||.|..|.+.... . .....++|+|.+..+|++|+. +|..|.|+.|
T Consensus 1 ~v~i-~~l~~~~~-~~~l~~~~~~~g~v~~~~~~~~~--------~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFV-GNLPPDVT-EEDLKELFSKFGPIESVKIPKDT--------G-KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEE-cCCCCcCC-HHHHHHHHHhcCCEEEEEEecCC--------C-CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 4788 78899987 89999999999999999887553 1 112689999999999999985 4788888888
Q ss_pred EE
Q 048615 544 QF 545 (634)
Q Consensus 544 ~l 545 (634)
++
T Consensus 70 ~v 71 (72)
T smart00362 70 RV 71 (72)
T ss_pred ee
Confidence 75
No 106
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=2.7e-06 Score=95.87 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC---------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS---------ERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk---------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
+..+.|||+||++ .++++.|...|..||.|..|+|+..+ .|+||-|-++.+|++|++.|+| ++.++.++
T Consensus 172 P~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4478999999999 59999999999999999999998743 4999999999999999999999 79999999
Q ss_pred EEeecCCCC
Q 048615 244 LWWANRDSI 252 (634)
Q Consensus 244 V~wak~~~~ 252 (634)
+-|++.-..
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999975443
No 107
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.20 E-value=1.2e-06 Score=71.64 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=50.4
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEE
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRII 145 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~ 145 (634)
+...+.+.+..+|.++|.|..+...+.+. +..+|||||+|.+.++| +|+..++|..++||.|+
T Consensus 7 p~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 7 PPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp TTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 34456677777788777777776666655 56789999999999999 99999999999999985
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=7.4e-07 Score=86.10 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
+...-+++++-.||..+|.+.++-.++++.+++++||||+-|++...- -|+..|||..|.||.|+|....
T Consensus 43 l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 43 LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 445568889999999999999999999999999999999999999999 9999999999999999998554
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.19 E-value=8.3e-06 Score=65.19 Aligned_cols=72 Identities=25% Similarity=0.379 Sum_probs=60.1
Q ss_pred eEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc--CCccCCcee
Q 048615 466 AFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS--GKSWQGHDL 543 (634)
Q Consensus 466 ~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~--g~~~~g~~l 543 (634)
+|+| ++||...+ +++|+++|..||+|..+.+...... .....++|+|.+..+|..|+.. |..|.|..+
T Consensus 1 ~i~i-~~l~~~~~-~~~i~~~~~~~g~i~~~~~~~~~~~--------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFV-GNLPPDVT-EEDLRELFSKFGKVESVRIVRDKDT--------KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEE-eCCCCccC-HHHHHHHHHhcCCEEEEEEeeCCCC--------CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4678 78999987 8999999999999999998865410 2237899999999999999864 777899999
Q ss_pred EEEE
Q 048615 544 QFTW 547 (634)
Q Consensus 544 ~l~W 547 (634)
.+.|
T Consensus 71 ~v~~ 74 (74)
T cd00590 71 RVEF 74 (74)
T ss_pred EEeC
Confidence 9887
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.19 E-value=3.1e-06 Score=88.99 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=105.9
Q ss_pred ccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCC-ceeCCEEEEEccCcccCCCCcccccccccccc
Q 048615 91 MSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQG-SYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNI 168 (634)
Q Consensus 91 ~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG-~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~ 168 (634)
-.++...|.+.........-...++||++|.|..++.+ .++ .|.+ ..+.++.+............. . .. .
T Consensus 106 ~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl~~~~~~~~~-n---~~---~ 177 (285)
T KOG4210|consen 106 DNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDLNTRRGLRPK-N---KL---S 177 (285)
T ss_pred cccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCccccccccccc-c---hh---c
Confidence 34455555444443444444556799999999999999 666 5566 466677666554443321000 0 00 0
Q ss_pred CCCCCCCCCEEE-EeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCe
Q 048615 169 RKPSQKALRTLF-VNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNR 240 (634)
Q Consensus 169 ~~~s~~~~~tLf-VgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR 240 (634)
+... ....++| |+++++. ++.++|..+|..+|.|..++++.++ +||||.|.....+..++.. +. .+.++
T Consensus 178 ~~~~-~~s~~~~~~~~~~f~-~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (285)
T KOG4210|consen 178 RLSS-GPSDTIFFVGELDFS-LTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGR 254 (285)
T ss_pred cccc-Cccccceeecccccc-cchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCc
Confidence 0111 1234555 9999995 9999999999999999999998765 5999999999999999988 66 79999
Q ss_pred EEEEEeecCCCC
Q 048615 241 FIKLWWANRDSI 252 (634)
Q Consensus 241 ~IkV~wak~~~~ 252 (634)
++++.+..+...
T Consensus 255 ~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 255 PLRLEEDEPRPK 266 (285)
T ss_pred ccccccCCCCcc
Confidence 999999875543
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.18 E-value=3e-06 Score=96.36 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=78.4
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc--CCccCCc
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS--GKSWQGH 541 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~--g~~~~g~ 541 (634)
.|||+| |.|+..++ +.+|++.|..||+|+||.+.... .||||+-..|.+||+|+.+ .-.+.+.
T Consensus 421 SrTLwv-G~i~k~v~-e~dL~~~feefGeiqSi~li~~R-------------~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 421 SRTLWV-GGIPKNVT-EQDLANLFEEFGEIQSIILIPPR-------------GCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeee-ccccchhh-HHHHHHHHHhcccceeEeeccCC-------------ceeEEEEeehhHHHHHHHHHhcccccce
Confidence 689999 99999998 99999999999999999999888 8999999999999999865 5567789
Q ss_pred eeEEEEeCCCCCCCCCCCCCCcccccCCCCCC----cccchhhhhhh
Q 048615 542 DLQFTWLMPSSSSNDLGNKEKTSTFLKGSSDT----DVQKEEKLSSV 584 (634)
Q Consensus 542 ~l~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 584 (634)
.+++.|+...-..+ -=||-.|. ..+|.+||..-
T Consensus 486 ~Iki~Wa~g~G~ks----------e~k~~wD~~lGVt~IP~~kLt~d 522 (894)
T KOG0132|consen 486 TIKIAWAVGKGPKS----------EYKDYWDVELGVTYIPWEKLTDD 522 (894)
T ss_pred eeEEeeeccCCcch----------hhhhhhhcccCeeEeehHhcCHH
Confidence 99999987665432 11244444 45788888543
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.17 E-value=5.6e-07 Score=90.92 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=70.9
Q ss_pred CCCccccccCCCCCCccccccCCCCCCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHH
Q 048615 48 NDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKED 127 (634)
Q Consensus 48 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~ 127 (634)
.|+.+++...|+ |.|-+|-+|+.- + -+.+-+.-.|.+|-.....+.++++.+++++|||||.|.+.++
T Consensus 177 swedPsl~ew~~-~DfRIfcgdlgN-e----------vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 177 SWEDPSLAEWDE-DDFRIFCGDLGN-E----------VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred ccCCcccccCcc-ccceeecccccc-c----------ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 788888886666 447888888841 1 1222344667777776666667888889999999999999999
Q ss_pred H-HHHhccCCceeCCEEEEEccCc
Q 048615 128 R-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 128 A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
+ .||.+|||..++.|+|+...+.
T Consensus 245 ~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHHHHHhhcccccccchhHhhhhh
Confidence 9 9999999999999999987544
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.13 E-value=3.6e-05 Score=81.47 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=114.0
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCE--EEEEccCcccCCC-------
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGK--RIIEGDAIQKNMD------- 155 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR--~I~V~~a~~k~~~------- 155 (634)
+.+-+..+.-..|.|--+.++++ + ---|.|+|++.+.| +|-..|||..|... +++|++|++....
T Consensus 135 tvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D 209 (494)
T KOG1456|consen 135 TVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD 209 (494)
T ss_pred chhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc
Confidence 44445666666677655555543 3 22699999999999 99999999988644 4788888764310
Q ss_pred --------------C------ccc-----------cc----------------------cccccccC----CCCCCCCCE
Q 048615 156 --------------P------STK-----------AQ----------------------NDHMRNIR----KPSQKALRT 178 (634)
Q Consensus 156 --------------~------~~~-----------~~----------------------~d~~~~~~----~~s~~~~~t 178 (634)
+ +.+ .. .+..+..+ .....+.+.
T Consensus 210 twDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~V 289 (494)
T KOG1456|consen 210 TWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCV 289 (494)
T ss_pred cccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcE
Confidence 0 000 00 00000000 011234688
Q ss_pred EEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 179 LFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 179 LfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+.|.+|....++-+.|..+|-.||.|.+|.+++.+ +-|.|++.+..+.++|+..||+ .+-|.+|.|.+.+
T Consensus 290 mMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 290 MMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred EEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 99999999889999999999999999999988865 7999999999999999999999 5677788888876
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.09 E-value=2.3e-06 Score=94.31 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=66.3
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
...+++.+.++|..+|.|...+.+-++.++.++||||++|.+.+++ .|+..|||.++.||+|+|.|+....
T Consensus 28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 4578999999999999999999999999999999999999999999 9999999999999999999987543
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=79.19 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccC-CCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKF-GEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~Fskf-G~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...-+||..+|.. +.+..+..+|.+| |.|..+++.+++ |||||+|++.+.|.-|-+.||+ .|+++.|.|.+
T Consensus 48 ~~g~~~~~~~p~g-~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHG-FFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeecccccc-hhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3468999999994 9999999999998 777788887764 6999999999999999999999 78999999998
Q ss_pred ecCC
Q 048615 247 ANRD 250 (634)
Q Consensus 247 ak~~ 250 (634)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7644
No 116
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=3.6e-06 Score=86.85 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=65.5
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+..++++.+...|.++|+|+.+..++++.+++++|||||+|+++-+. .|....+|..|+||.|.|..-....
T Consensus 110 nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 110 NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 45688889999999999999999999999999999999999999999 9999999999999999998766544
No 117
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.99 E-value=3.2e-05 Score=77.06 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec-CC------CeEEEEeCCHHHHHHHHHcCCC-ccC---CeEEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL-NS------ERAFVQFSKREEAEAALKSPDA-VMG---NRFIKL 244 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~-dk------g~AFV~F~s~e~A~~Ai~~lng-~l~---gR~IkV 244 (634)
-+||||.+||.| +...+|..+|..|-.-..+.+.. ++ -+|||+|.++.+|..|+..||| .|+ +..|++
T Consensus 34 VRTLFVSGLP~D-vKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPND-VKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCcc-cCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 589999999998 99999999999987666665543 22 2899999999999999999999 455 788999
Q ss_pred EeecCCCC
Q 048615 245 WWANRDSI 252 (634)
Q Consensus 245 ~wak~~~~ 252 (634)
.+|+...+
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99986554
No 118
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.95 E-value=7.9e-06 Score=86.61 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~ 249 (634)
.++|||++|+++ ++++.|+.+|.+||+|.+|.|++++ +|+||+|++.+....++......|+||.|.+.-+.+
T Consensus 6 ~~KlfiGgisw~-ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWE-TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCcc-ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 589999999997 9999999999999999999999875 699999999999999988887889999999887764
Q ss_pred CC
Q 048615 250 DS 251 (634)
Q Consensus 250 ~~ 251 (634)
..
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 43
No 119
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.95 E-value=2.3e-05 Score=86.08 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----C--CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----S--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----k--g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~ 249 (634)
..+|||.|||++ ++..+|+++|.+||.|....|..- + .||||+|.+.+++..||++---.|++|.+.|.--+.
T Consensus 288 ~~~i~V~nlP~d-a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPD-ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCC-CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 356999999997 999999999999999999887652 2 599999999999999999885589999999987655
Q ss_pred CC
Q 048615 250 DS 251 (634)
Q Consensus 250 ~~ 251 (634)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 33
No 120
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.89 E-value=1.1e-05 Score=71.64 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=63.1
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
.++| ++..-+-+....+||++|.|+-+++..++.+ +|.|||.|++..+| +|+..|+|..+.+|.+.|-+..+
T Consensus 22 yirN-Lp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 22 YIRN-LPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred EEec-CCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3555 6666778888999999999999988877766 99999999999999 99999999999999999987654
No 121
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=3.4e-05 Score=79.09 Aligned_cols=75 Identities=25% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.++|+|.|||+. +.+.+|+++|..||.+..+.|.+++ +.|-|.|...++|..|++.+++ .++|++|++.....
T Consensus 83 ~~~v~v~NL~~~-V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYG-VIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcC-cchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 378999999995 9999999999999999999988876 6999999999999999999999 69999999998754
Q ss_pred CC
Q 048615 250 DS 251 (634)
Q Consensus 250 ~~ 251 (634)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 122
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=4.5e-05 Score=73.63 Aligned_cols=76 Identities=28% Similarity=0.257 Sum_probs=65.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
+..|.|+| |.|++..+ +.+|-.-|..||.|.+|-+.-..+ ..|||.|.++.+||.|.. .|+.|.
T Consensus 8 ~~~~kVYV-GnL~~~a~-k~eLE~~F~~yG~lrsvWvArnPP------------GfAFVEFed~RDA~DAvr~LDG~~~c 73 (195)
T KOG0107|consen 8 NGNTKVYV-GNLGSRAT-KRELERAFSKYGPLRSVWVARNPP------------GFAFVEFEDPRDAEDAVRYLDGKDIC 73 (195)
T ss_pred CCCceEEe-ccCCCCcc-hHHHHHHHHhcCcceeEEEeecCC------------CceEEeccCcccHHHHHhhcCCcccc
Confidence 56899999 99999998 899999999999999999887664 899999999999999974 599999
Q ss_pred C--ceeEEEEeCCC
Q 048615 540 G--HDLQFTWLMPS 551 (634)
Q Consensus 540 g--~~l~l~W~~~~ 551 (634)
| -+|+|+=+.+.
T Consensus 74 G~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 74 GSRIRVELSTGRPR 87 (195)
T ss_pred CceEEEEeecCCcc
Confidence 9 45555555444
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=1.8e-05 Score=79.48 Aligned_cols=71 Identities=17% Similarity=0.371 Sum_probs=63.8
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
..+||++||+. ..+.+|..+|..||.|.+|.|. .+|+||+|.+..+|.-|+..+++ +|+|-.+.|.|++..
T Consensus 2 ~rv~vg~~~~~-~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYR-ARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCc-cchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 47999999995 9999999999999999998764 47889999999999999999999 788777999999743
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=1e-05 Score=89.45 Aligned_cols=68 Identities=34% Similarity=0.438 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
+.++|+|-|||. .+++++|+.+|+.||+|..|+.-+.+ +..||+|.+..+|+.|++++++ .|.|+.|+
T Consensus 74 ~~~~L~v~nl~~-~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPR-SVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCC-cCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 357999999999 59999999999999999999887754 7999999999999999999999 89999998
No 125
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.80 E-value=0.00018 Score=81.64 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=73.6
Q ss_pred ccccc-CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-
Q 048615 456 NRYKL-DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL- 533 (634)
Q Consensus 456 ~~~~l-Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~- 533 (634)
+.+.. |+-+|.|+| |+|++.+. +..|..-|..||-|.+|++-=-.-++. .-..-.|+||.|-+|++||+|+.
T Consensus 165 gsfDdgDP~TTNlyv-~Nlnpsv~-E~~ll~tfGrfgPlasvKimwpRtEeE----k~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYV-GNLNPSVD-ENFLLRTFGRFGPLASVKIMWPRTEEE----KRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CcCCCCCCcccceee-ecCCcccc-HHHHHHHhcccCcccceeeecccchhh----hccccccceeeehhhhhHHHHHHH
Confidence 45655 999999999 89999996 999999999999999999742221000 01122799999999999999995
Q ss_pred -cCCccCCceeEEEEeCCCCC
Q 048615 534 -SGKSWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 534 -~g~~~~g~~l~l~W~~~~~~ 553 (634)
+|..+-+..++|.|+++..-
T Consensus 239 lqg~iv~~~e~K~gWgk~V~i 259 (877)
T KOG0151|consen 239 LQGIIVMEYEMKLGWGKAVPI 259 (877)
T ss_pred hcceeeeeeeeeecccccccc
Confidence 59999999999999976643
No 126
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.79 E-value=9e-06 Score=88.33 Aligned_cols=77 Identities=38% Similarity=0.571 Sum_probs=68.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~~ 250 (634)
..++.|-+..+|+...+..+|..||.+||.|.+|.|......|.|+|.++.+|..|......+|+||+|||.|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34677888888887778999999999999999999988878999999999999999877766999999999999843
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.78 E-value=3.8e-06 Score=89.83 Aligned_cols=140 Identities=20% Similarity=0.280 Sum_probs=109.3
Q ss_pred CCccccccccccceeeecc-eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCc-eeCCEEEEEccCcccCCCCc
Q 048615 81 GTAAVSQNTSMSVWGRIGS-SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGS-YRRGKRIIEGDAIQKNMDPS 157 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~-V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~-~l~GR~I~V~~a~~k~~~~~ 157 (634)
+.+..+-+++.+|||.-.. ...-+.++ .||+||.+.+...| +|+..++|+ .+.|+++.|....++...
T Consensus 9 L~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr-- 79 (584)
T KOG2193|consen 9 LSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR-- 79 (584)
T ss_pred cCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH--
Confidence 3344555667888875421 11111222 79999999999999 999999995 589999999987765421
Q ss_pred cccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEe-cCCCe--EEEEeCCHHHHHHHHHcCC
Q 048615 158 TKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIP-LNSER--AFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 158 ~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~-~dkg~--AFV~F~s~e~A~~Ai~~ln 234 (634)
.+++-|.|||+. ..++.|..+..+||.+.+|... .+... .-|+|...+.+..||..++
T Consensus 80 ------------------srk~Qirnippq-l~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 80 ------------------SRKIQIRNIPPQ-LQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred ------------------hhhhhHhcCCHH-HHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 246889999995 9999999999999999998653 45553 4489999999999999999
Q ss_pred C-ccCCeEEEEEeec
Q 048615 235 A-VMGNRFIKLWWAN 248 (634)
Q Consensus 235 g-~l~gR~IkV~wak 248 (634)
| .|.+..++|.|.-
T Consensus 141 g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 141 GPQLENQHLKVGYIP 155 (584)
T ss_pred chHhhhhhhhcccCc
Confidence 9 7999999999973
No 128
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.73 E-value=1.1e-05 Score=74.84 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=64.0
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
.-++++.+...|..+|+|+++..--++.++-.+||+.|+|++.+.| .||..|||..|.|.+|.|.|+-.+.
T Consensus 82 eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 82 EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 3467788888999999999998888888888899999999999999 9999999999999999999998655
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=2.4e-05 Score=90.22 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+.+.-+...+...|...+.+.++.+...+-.+..+|+|||+|...+.+ +|| .|+-..+.|
T Consensus 675 l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV-~f~d~~~~g------------------ 735 (881)
T KOG0128|consen 675 LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV-AFRDSCFFG------------------ 735 (881)
T ss_pred cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh-hhhhhhhhh------------------
Confidence 334444445555555555544444443444556799999999999999 777 444444444
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~ln 234 (634)
+..|||.|.|+. .|.+.|+.+|.++|.+.+++++.. +|.|||.|.+..+|.+++..++
T Consensus 736 ----------------K~~v~i~g~pf~-gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQ-GTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ----------------hhhhheeCCCCC-CchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccch
Confidence 147999999995 999999999999999999987664 3799999999999999999998
Q ss_pred C-ccCCeEEEEEeecCCC
Q 048615 235 A-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 235 g-~l~gR~IkV~wak~~~ 251 (634)
. .++-+.+.|...++.+
T Consensus 799 ~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhhhhcCccccccCCcc
Confidence 8 6777778888766533
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.67 E-value=2.5e-05 Score=82.91 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=108.7
Q ss_pred Ccccccccccccee-----eecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC-
Q 048615 82 TAAVSQNTSMSVWG-----RIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM- 154 (634)
Q Consensus 82 ~~~~s~~~~~svfg-----~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~- 154 (634)
..+.+...+..+|+ .-+.+.+.+. .+.+++--|-|||.|..+++| .|+.. |...++-|.|.+..+.....
T Consensus 170 Pfdat~~dVv~FF~~~cpv~~g~egvLFV--~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvq 246 (508)
T KOG1365|consen 170 PFDATALDVVEFFGPPCPVTGGTEGVLFV--TRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQ 246 (508)
T ss_pred CCCcchHHHHHhcCCCCcccCCccceEEE--ECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHH
Confidence 34566677788886 2233333332 344555579999999999999 89866 66677777777654432210
Q ss_pred ------------CCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEE--EEEecCC-----C
Q 048615 155 ------------DPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGE-VVD--IYIPLNS-----E 214 (634)
Q Consensus 155 ------------~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~--v~v~~dk-----g 214 (634)
+.............-.+..+....|.+++||++ .+.++|..+|..|-. |.. |.|+.+. |
T Consensus 247 qvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~-AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 247 QVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE-ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh-hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 000000000001111223344568999999995 999999999999864 333 6666653 5
Q ss_pred eEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 215 RAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 215 ~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
-|||+|.+.+.|..|....+. .+..|.|.|+-+.
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 899999999999999998887 5569999999774
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.64 E-value=0.0006 Score=72.50 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=105.0
Q ss_pred cccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCC-----------Cc
Q 048615 90 SMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMD-----------PS 157 (634)
Q Consensus 90 ~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~-----------~~ 157 (634)
++.+|=.+|.|..++.||+| -|-|.|+.-+.... +|+..||+..+.|.+|.|..+.+.-.. +.
T Consensus 305 lFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpS 379 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPS 379 (494)
T ss_pred hhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcc
Confidence 56677778888888888887 47899999999999 999999999999999998876654311 11
Q ss_pred cccccccccc--------cCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEEEEEecCC----CeEEEEeCCHH
Q 048615 158 TKAQNDHMRN--------IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGE-VVDIYIPLNS----ERAFVQFSKRE 224 (634)
Q Consensus 158 ~~~~~d~~~~--------~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~v~v~~dk----g~AFV~F~s~e 224 (634)
.+.+.....+ ....-.++.+.|...|.|.. +||+.|..+|..-+. -++|+|..-+ .-+.++|++.+
T Consensus 380 fKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~-vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s 458 (494)
T KOG1456|consen 380 FKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLG-VTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKS 458 (494)
T ss_pred hhhcccccccccCChhHhhcccccCCcceeEEecCCCc-cCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHH
Confidence 1111111000 00011245679999999995 999999999986543 4566666544 37999999999
Q ss_pred HHHHHHHcCCC-ccCC
Q 048615 225 EAEAALKSPDA-VMGN 239 (634)
Q Consensus 225 ~A~~Ai~~lng-~l~g 239 (634)
+|..||..+|. .|.+
T Consensus 459 ~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 459 DAVEALMKLNHYPIEG 474 (494)
T ss_pred HHHHHHHHhccccccC
Confidence 99999999998 4543
No 132
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00027 Score=78.04 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=91.7
Q ss_pred CccccccccccceeeecceeeeeccccccC--CCcCc---eEEEEcCCHHHHHHHhccCCceeCCEEEE--EccCcccCC
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKID--ATLNS---LDYLENETKEDREALPSLQGSYRRGKRII--EGDAIQKNM 154 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~--~~s~G---fgFVeF~~~e~A~Ai~~mnG~~l~GR~I~--V~~a~~k~~ 154 (634)
....++..+...|+++|++.+-=-.|.... .-.+| |.|+.|+++..+.++. +.......... |.-..-+..
T Consensus 268 p~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll--~aC~~~~~~~yf~vss~~~k~k 345 (520)
T KOG0129|consen 268 PWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL--SACSEGEGNYYFKVSSPTIKDK 345 (520)
T ss_pred CccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHH--HHHhhcccceEEEEecCccccc
Confidence 455677778888999998765322111111 12356 9999999998884332 12223333333 332222221
Q ss_pred CCcc----ccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhc-cCCCEEEEEEecCC------CeEEEEeCCH
Q 048615 155 DPST----KAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQ-KFGEVVDIYIPLNS------ERAFVQFSKR 223 (634)
Q Consensus 155 ~~~~----~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~Fs-kfG~I~~v~v~~dk------g~AFV~F~s~ 223 (634)
.-.. -...+..... ...-.+.+|||||+||.- ++-.+|-.+|. -||.|..+-|..|+ |-|=|+|.+.
T Consensus 346 ~VQIrPW~laDs~fv~d~-sq~lDprrTVFVGgvprp-l~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 346 EVQIRPWVLADSDFVLDH-NQPIDPRRTVFVGGLPRP-LTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred ceeEEeeEeccchhhhcc-CcccCccceEEecCCCCc-chHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 0000 0000000000 011134689999999995 99999999999 69999999998884 5688999999
Q ss_pred HHHHHHHHc
Q 048615 224 EEAEAALKS 232 (634)
Q Consensus 224 e~A~~Ai~~ 232 (634)
.+-.+||.+
T Consensus 424 qsYi~AIsa 432 (520)
T KOG0129|consen 424 QAYIKAISA 432 (520)
T ss_pred HHHHHHHhh
Confidence 999999875
No 133
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00012 Score=57.76 Aligned_cols=52 Identities=37% Similarity=0.705 Sum_probs=46.4
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHH
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAAL 230 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai 230 (634)
+.|-|.+.+++ ..+.+..+|..||+|+++.+.....+.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 57899999996 56778889999999999998877789999999999999985
No 134
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=4.2e-05 Score=80.52 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=63.6
Q ss_pred ccCCCCCCc-------ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCce
Q 048615 67 ASDSADNDL-------PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSY 138 (634)
Q Consensus 67 ~~~~~~~~~-------~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~ 138 (634)
|||+++.++ .|-+ +.+.++.+.+.-+|.++|.+..+..++++.++.+=-||||+|+++++. +|.-.|++..
T Consensus 227 vGDlpdAd~~PPeNVLFVCK-LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 227 VGDLPDADVKPPENVLFVCK-LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred hcCCcccccCCCcceEEEEe-cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 677765332 2222 456666666666666666666666677777777778999999999999 9999999999
Q ss_pred eCCEEEEEccCcc
Q 048615 139 RRGKRIIEGDAIQ 151 (634)
Q Consensus 139 l~GR~I~V~~a~~ 151 (634)
|+.|.|.|.++.+
T Consensus 306 IDDrRIHVDFSQS 318 (479)
T KOG0415|consen 306 IDDRRIHVDFSQS 318 (479)
T ss_pred eccceEEeehhhh
Confidence 9999999997753
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.56 E-value=0.00023 Score=72.81 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.+.+||+|+.+ .++.+++..+|+-||.|..|.|..++ +|+||+|.+.+.+..|+. |++ .|.|+.|.|.|.+
T Consensus 101 ~~sv~v~nvd~-~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 101 APSVWVGNVDF-LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CceEEEecccc-ccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 47999999999 58988899999999999988887754 599999999999999999 888 8999999999987
Q ss_pred CC
Q 048615 249 RD 250 (634)
Q Consensus 249 ~~ 250 (634)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 55
No 136
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.49 E-value=7.8e-05 Score=73.72 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=49.5
Q ss_pred cccceeee-cceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccC
Q 048615 90 SMSVWGRI-GSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 90 ~~svfg~I-g~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a 149 (634)
....|... |.|..++..+.+.+|.|+|||||+|++++.| -|...||+.-|.|+-+.|..-
T Consensus 66 ~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 66 ILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred HhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34445555 6677776778899999999999999999999 899999999999998887744
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=6.2e-05 Score=74.91 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
.+..+||||+|+-.. ++++-|.++|-+-|.|.+|.|+.++ .||||.|.+.-...-|++.+|| .+.++.|+|.+-
T Consensus 6 ae~drtl~v~n~~~~-v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSG-VSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhh-hhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 344689999999996 9999999999999999999988754 4999999999999999999999 699999998875
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.32 E-value=3.6e-05 Score=76.58 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 72 DNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 72 ~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
|.++.|.| +..-.+++.++.+|=..|+|..+.+.+.+-. .-+ ||||.|.++-.. -|+.-|||..+.++.|.|.+-.
T Consensus 9 drtl~v~n-~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQN-MYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHh-hhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34556666 5556788889999999999998877776654 335 999999999999 9999999999999998877432
Q ss_pred ccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHH
Q 048615 151 QKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREE 225 (634)
Q Consensus 151 ~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~ 225 (634)
... ..- |.. .++++.+...|+.-|.|..+++..+. .++||.+....+
T Consensus 86 G~s----------------------hap-----ld~-r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 86 GNS----------------------HAP-----LDE-RVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred CCC----------------------cch-----hhh-hcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 111 001 344 47888899999999999999987653 478887765555
Q ss_pred HHHHHHcCCC
Q 048615 226 AEAALKSPDA 235 (634)
Q Consensus 226 A~~Ai~~lng 235 (634)
.-.++....+
T Consensus 138 ~P~~~~~y~~ 147 (267)
T KOG4454|consen 138 VPFALDLYQG 147 (267)
T ss_pred CcHHhhhhcc
Confidence 5555544433
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.25 E-value=0.0012 Score=67.75 Aligned_cols=87 Identities=30% Similarity=0.408 Sum_probs=73.0
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
..|.|+++|.| .+||.++. .++|++.|..||++..|-+.-++.- .+. +++-|.|..|.+|++|+. +|.
T Consensus 78 ~~~~~~~~v~v-~NL~~~V~-~~Dl~eLF~~~~~~~r~~vhy~~~G-------~s~-Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 78 INETRSTKVNV-SNLPYGVI-DADLKELFAEFGELKRVAVHYDRAG-------RSL-GTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred ccCCCcceeee-ecCCcCcc-hHHHHHHHHHhccceEEeeccCCCC-------CCC-ccceeeecchHhHHHHHHHhcCc
Confidence 58999999999 79999998 8999999999999999888766521 233 799999999999999995 487
Q ss_pred ccCCceeEEEEeCCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~~ 555 (634)
.+.|..++|.=+.++..++
T Consensus 148 ~ldG~~mk~~~i~~~~~~~ 166 (243)
T KOG0533|consen 148 ALDGRPMKIEIISSPSQSK 166 (243)
T ss_pred ccCCceeeeEEecCccccc
Confidence 7889888888877665543
No 140
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.20 E-value=0.00068 Score=71.21 Aligned_cols=71 Identities=20% Similarity=0.455 Sum_probs=58.2
Q ss_pred CEEEEeCCCCCCCCHH---HH--HHhhccCCCEEEEEEecCC-------C--eEEEEeCCHHHHHHHHHcCCC-ccCCeE
Q 048615 177 RTLFVNNVPLKSNRRE---AL--LSHFQKFGEVVDIYIPLNS-------E--RAFVQFSKREEAEAALKSPDA-VMGNRF 241 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~---~L--~~~FskfG~I~~v~v~~dk-------g--~AFV~F~s~e~A~~Ai~~lng-~l~gR~ 241 (634)
.-+||-+||+...+|+ .| .++|.+||.|..|.|.+.- + -.||+|.+.++|..||...+| .++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4689999998644444 23 3799999999999886532 2 349999999999999999999 899999
Q ss_pred EEEEee
Q 048615 242 IKLWWA 247 (634)
Q Consensus 242 IkV~wa 247 (634)
|+..|.
T Consensus 195 lkatYG 200 (480)
T COG5175 195 LKATYG 200 (480)
T ss_pred EeeecC
Confidence 999987
No 141
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.14 E-value=0.00073 Score=60.40 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEE-ecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVE-LEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~-~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~g 540 (634)
+.+.|.|=|. |... ...+.+||.+||+|.... +..... --...+-+...++..|+|.++.+|+||+.. |..|.|
T Consensus 5 ~~~wVtVFGf-p~~~--~~~Vl~~F~~~G~Ile~~~~~~~~~-~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 5 SETWVTVFGF-PPSA--SNQVLRHFSSFGTILEHFEVLRSSS-GINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp GCCEEEEE----GGG--HHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred CCeEEEEEcc-CHHH--HHHHHHHHHhcceEEEeeccccccc-ccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 4566777654 4433 579999999999997764 000000 000000112238999999999999999964 999987
Q ss_pred -ceeEEEEeC
Q 048615 541 -HDLQFTWLM 549 (634)
Q Consensus 541 -~~l~l~W~~ 549 (634)
-.+=+.|..
T Consensus 81 ~~mvGV~~~~ 90 (100)
T PF05172_consen 81 SLMVGVKPCD 90 (100)
T ss_dssp CEEEEEEE-H
T ss_pred cEEEEEEEcH
Confidence 456677753
No 142
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.0058 Score=62.51 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=75.6
Q ss_pred HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEE
Q 048615 129 EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIY 208 (634)
Q Consensus 129 ~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~ 208 (634)
.|-.+|+|+...||.++|.++.. ..|||.||.. .+.-+.|..-|+.||.|....
T Consensus 9 ~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~-~~sndll~~~f~~fg~~e~av 62 (275)
T KOG0115|consen 9 IAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQ-GASNDLLEQAFRRFGPIERAV 62 (275)
T ss_pred HHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecch-hhhhHHHHHhhhhcCccchhe
Confidence 66678899999999999998752 4899999999 599999999999999998766
Q ss_pred EecC-C----CeEEEEeCCHHHHHHHHHcCC--C---ccCCeEEEEEee
Q 048615 209 IPLN-S----ERAFVQFSKREEAEAALKSPD--A---VMGNRFIKLWWA 247 (634)
Q Consensus 209 v~~d-k----g~AFV~F~s~e~A~~Ai~~ln--g---~l~gR~IkV~wa 247 (634)
+..| . +-++|.|...-.|.+|+..+. + ...+++.-|.-.
T Consensus 63 ~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 63 AKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 5554 2 379999999999999998884 3 355676666543
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.99 E-value=0.0016 Score=56.10 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=47.9
Q ss_pred CEEEEeCCCCCCCCHHH----HHHhhccCC-CEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 177 RTLFVNNVPLKSNRREA----LLSHFQKFG-EVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~----L~~~FskfG-~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
+.|||.|||.+ .+... |+.++.-+| .|..|. .+.|+|.|.+.+.|.+|.+.|+| .+-|+.|.|.|....
T Consensus 3 s~L~V~NLP~~-~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTN-KDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TT-S-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCC-CCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 57999999995 77655 567777776 676663 57999999999999999999999 677888999998543
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.97 E-value=0.0013 Score=59.21 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=39.1
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln 234 (634)
+.|+|.+++.+ ++.++|+.+|+.||.|..|.+.....-|||.|.+.+.|+.|+..+.
T Consensus 2 ~il~~~g~~~~-~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEP-TSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS---HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCC-cCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 57889999996 8999999999999999999988877799999999999999998763
No 145
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.74 E-value=0.0033 Score=69.26 Aligned_cols=71 Identities=28% Similarity=0.508 Sum_probs=61.5
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANR 249 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~ 249 (634)
.-|.+.+||+ ++|+++|+++|+.+ .|.++.+.+. .+=|||+|.+.+++++|++.-.-.|+.|.|.|+-+..
T Consensus 11 ~~vr~rGLPw-sat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 11 FEVRLRGLPW-SATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred eEEEecCCCc-cccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 5678899999 59999999999999 5888877775 3689999999999999999866689999999987743
No 146
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.73 E-value=0.0067 Score=54.28 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=53.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEE-------------EecCCCeEEEEeCCHHHHHHHHHcCCC-ccCC-e
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIY-------------IPLNSERAFVQFSKREEAEAALKSPDA-VMGN-R 240 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~-------------v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~g-R 240 (634)
.+.|.|-+.|+. ....+..+|++||.|++.. +.....+-.|+|.++.+|.+||+. || +|+| -
T Consensus 6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS--ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG--GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH--HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 468999999994 7788999999999999885 445567999999999999999986 55 7876 4
Q ss_pred EEEEEeec
Q 048615 241 FIKLWWAN 248 (634)
Q Consensus 241 ~IkV~wak 248 (634)
.+-|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 56688874
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.69 E-value=0.007 Score=53.85 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=59.2
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhcc--CCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-cc----CCeEEE
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQK--FGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VM----GNRFIK 243 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~Fsk--fG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l----~gR~Ik 243 (634)
+||-|.|||.. .+.++|.+++.. .|..--+.++.| .|||||.|.+++.|.+-.+.++| .. ..+.+.
T Consensus 2 TTvMirNIPn~-~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNK-YTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCC-CCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 69999999995 999999988865 356666666655 37999999999999999999998 32 357789
Q ss_pred EEeecCC
Q 048615 244 LWWANRD 250 (634)
Q Consensus 244 V~wak~~ 250 (634)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 9999743
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.64 E-value=0.0036 Score=71.19 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=108.3
Q ss_pred CCcccccCCC-cccccccccccee-ee-cceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEcc
Q 048615 73 NDLPVRNAGT-AAVSQNTSMSVWG-RI-GSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGD 148 (634)
Q Consensus 73 ~~~~v~n~~~-~~~s~~~~~svfg-~I-g~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~ 148 (634)
.+|+++-.+- ...+.+.++.+|- +. -.+.... ........|-++|+|....++ +|+.. |.+.+-.|.|.|..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~---~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSE---NRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGP 385 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhh---hhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecC
Confidence 4455433222 2345555666664 22 2233322 233333368899999999999 99854 88888899999876
Q ss_pred CcccCC--CC----------cccccc---ccccc---cC---CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE-
Q 048615 149 AIQKNM--DP----------STKAQN---DHMRN---IR---KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVD- 206 (634)
Q Consensus 149 a~~k~~--~~----------~~~~~~---d~~~~---~~---~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~- 206 (634)
+..... .. .....+ ...+. .+ +......-.|||.+||.. +++.++.++|..--.|++
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~-t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVM-TPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCcc-ccccchhhhhhhhhhhhhe
Confidence 654321 00 000000 00000 00 011234578999999995 899999999998777777
Q ss_pred EEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 207 IYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 207 v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
|.|.+-+ .-|||.|...+++.+|...-.. .++.|.|+|.-.
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 6665422 4899999999999999877666 788999999743
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.45 E-value=0.0013 Score=70.51 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=112.6
Q ss_pred CCCCCCcccccCCCccccccccccceeeecceeeeeccccccC---CCcCceEEEEcCCHHHHHHHhccCCceeCCEEEE
Q 048615 69 DSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKID---ATLNSLDYLENETKEDREALPSLQGSYRRGKRII 145 (634)
Q Consensus 69 ~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~---~~s~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~ 145 (634)
.+...-++|.| ..+..+-+.+..+||-||.|.....+..--+ .+.+-.|||.|.+...+-+.+.|-+++|-++.|.
T Consensus 4 g~~~~vIqvan-ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdrali 82 (479)
T KOG4676|consen 4 GSSLGVIQVAN-ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALI 82 (479)
T ss_pred CCCCceeeecc-cCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEE
Confidence 33344556666 6778888889999998888776655442211 2346689999999999966668899999999998
Q ss_pred EccCcccCCCCc--------------ccc-----cccccc--------cc-CCCCC----------CCCCEEEEeCCCCC
Q 048615 146 EGDAIQKNMDPS--------------TKA-----QNDHMR--------NI-RKPSQ----------KALRTLFVNNVPLK 187 (634)
Q Consensus 146 V~~a~~k~~~~~--------------~~~-----~~d~~~--------~~-~~~s~----------~~~~tLfVgnLp~d 187 (634)
|-+......+.. ... .++..- .. ..|.- .-.++|+|++|+.+
T Consensus 83 v~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 83 VRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred EEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 876544332111 000 000000 00 00110 12468999999996
Q ss_pred CCCHHHHHHhhccCCCEEEEEEec--CCCeEEEEeCCHHHHHHHHHcCCCcc
Q 048615 188 SNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDAVM 237 (634)
Q Consensus 188 ~~te~~L~~~FskfG~I~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng~l 237 (634)
+...++-++|..+|.|...++.- +.-+|-|.|........|+..++-++
T Consensus 163 -~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 163 -AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred -hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 88999999999999998877654 23478899999999888888764443
No 150
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.16 E-value=0.0023 Score=65.32 Aligned_cols=63 Identities=17% Similarity=0.388 Sum_probs=56.3
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCC------------------eEEEEeCCHHHHHHHHHcCCC-cc
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE------------------RAFVQFSKREEAEAALKSPDA-VM 237 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg------------------~AFV~F~s~e~A~~Ai~~lng-~l 237 (634)
-.||+++||+ +++..-|+++|+.||.|-.|.+.+... -|+|+|.+...|..+...||+ .|
T Consensus 75 GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 5899999999 599999999999999999999987431 388999999999999999999 78
Q ss_pred CCe
Q 048615 238 GNR 240 (634)
Q Consensus 238 ~gR 240 (634)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 875
No 151
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.07 E-value=0.012 Score=63.00 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=87.4
Q ss_pred CceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccc-cCCCCCCCCCEEEEeCCCCCCCCHH
Q 048615 115 NSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRN-IRKPSQKALRTLFVNNVPLKSNRRE 192 (634)
Q Consensus 115 ~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~-~~~~s~~~~~tLfVgnLp~d~~te~ 192 (634)
.|.+.|.|.+.|.- -|++. +...+++|.|.|-.+.....- ...+..... ....+....--|.+++||++ +++.
T Consensus 102 nge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f~---~iagg~s~e~~~flsk~~qvivRmRGLPfd-at~~ 176 (508)
T KOG1365|consen 102 NGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEFL---KIAGGTSNEAAPFLSKENQVIVRMRGLPFD-ATAL 176 (508)
T ss_pred ccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhhe---EecCCccccCCCCCCcccceEEEecCCCCC-cchH
Confidence 68999999998887 77754 777889999999876654310 000000000 00111122356778999997 9999
Q ss_pred HHHHhhccC----CCEEEEEEecC---C--CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 193 ALLSHFQKF----GEVVDIYIPLN---S--ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 193 ~L~~~Fskf----G~I~~v~v~~d---k--g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
++..+|..- |.+..|-++.. + |=|||.|...++|..|+......|+-|.|.++-+
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999732 23344433332 1 5899999999999999998777888888888655
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.06 E-value=0.0052 Score=66.73 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-------------------CCeEEEEeCCHHHHHHHHHcCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-------------------SERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-------------------kg~AFV~F~s~e~A~~Ai~~lng 235 (634)
..++|.+.|||.+ -.-+.|.++|+.||.|..|+|... +.||||+|...+.|.+|.+.++.
T Consensus 230 ~srtivaenLP~D-h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLD-HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcc-hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4689999999998 566889999999999999998754 13899999999999999999865
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.02 E-value=0.019 Score=51.86 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=35.5
Q ss_pred eEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 466 AFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 466 ~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
.|.|.| ++...+ .++|+++|.+||+|.+|.+.... ..++|-|++-.+|++|+..
T Consensus 3 il~~~g-~~~~~~-re~iK~~f~~~g~V~yVD~~~G~-------------~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSG-LGEPTS-REDIKEAFSQFGEVAYVDFSRGD-------------TEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE---SS---HHHHHHHT-SS--EEEEE--TT--------------SEEEEEESS---HHHHHHH
T ss_pred EEEEec-CCCCcC-HHHHHHHHHhcCCcceEEecCCC-------------CEEEEEECCcchHHHHHHH
Confidence 467754 666776 99999999999999999999876 7899999999999999864
No 154
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.65 E-value=0.00075 Score=78.21 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=106.8
Q ss_pred cccceeeecceeeeeccccccCCCcCceEEEEcCCHHHHHHHhccCCceeCCEEEEEccCcccCCCCccccccccccccC
Q 048615 90 SMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIR 169 (634)
Q Consensus 90 ~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~ 169 (634)
.+.-|+-.+.|+.+...+.+......-++|+++....++++...+.|.-+.++.+.|..+.++......+...+..
T Consensus 589 ~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~---- 664 (881)
T KOG0128|consen 589 QRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEI---- 664 (881)
T ss_pred hHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHH----
Confidence 3566777777777766664444333338999999999995555889999999999988877655222211111111
Q ss_pred CCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec------CCCeEEEEeCCHHHHHHHHHcCCCccCCeEEE
Q 048615 170 KPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL------NSERAFVQFSKREEAEAALKSPDAVMGNRFIK 243 (634)
Q Consensus 170 ~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~------dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~Ik 243 (634)
+..+++||.||++ .+.+.+|...|..||.|..+++.. -+|+|||.|...+++.+|+.-..+.+-| .++
T Consensus 665 ----R~~~~~fvsnl~~-~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K~~ 738 (881)
T KOG0128|consen 665 ----RDLIKIFVSNLSP-KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-KIS 738 (881)
T ss_pred ----HHHHHHHHhhcch-hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-hhh
Confidence 2257999999999 599999999999999988887652 2479999999999999999988885444 344
Q ss_pred EEe
Q 048615 244 LWW 246 (634)
Q Consensus 244 V~w 246 (634)
|..
T Consensus 739 v~i 741 (881)
T KOG0128|consen 739 VAI 741 (881)
T ss_pred hhe
Confidence 443
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.51 E-value=0.017 Score=59.24 Aligned_cols=61 Identities=21% Similarity=0.129 Sum_probs=49.5
Q ss_pred cccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 90 SMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 90 ~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+...|.-.|.+..+.++.++..+.++||+||+|.+.+.+ .|+. |||..|.|+.|.|.+-.-
T Consensus 118 ~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 118 IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 555566666665555567788777899999999999999 9997 999999999999886543
No 156
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.48 E-value=0.028 Score=58.54 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=51.3
Q ss_pred HHHHHHhhccCCCEEEEEEecCCC-------eEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 191 REALLSHFQKFGEVVDIYIPLNSE-------RAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 191 e~~L~~~FskfG~I~~v~v~~dkg-------~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
++++..-+.+||.|.+|-|...++ .-||+|...++|.+|+-.||| .|+||.++..|.+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 456778899999999998876553 689999999999999999999 89999999888753
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.34 E-value=0.014 Score=62.42 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--------EEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--------IYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGN 239 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--------v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~g 239 (634)
.+-+|||.+||. ++++++|..+|.++|.|.. |.|.+++ +-|.|.|.+...|+.|+.-+++ .+.|
T Consensus 65 ~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 357999999999 6999999999999998863 4444443 5799999999999999999999 7888
Q ss_pred eEEEEEeecCCC
Q 048615 240 RFIKLWWANRDS 251 (634)
Q Consensus 240 R~IkV~wak~~~ 251 (634)
..|+|..|....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999996443
No 158
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=0.016 Score=64.77 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=61.0
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-|....+|.| =.||..++ .++|+.-|..||||.-|..++... .-++|.|.+-+.||+|+. ++.
T Consensus 70 ~~~~~~~~L~v-~nl~~~Vs-n~~L~~~f~~yGeir~ir~t~~~~------------~~~~v~FyDvR~A~~Alk~l~~~ 135 (549)
T KOG4660|consen 70 EKDMNQGTLVV-FNLPRSVS-NDTLLRIFGAYGEIREIRETPNKR------------GIVFVEFYDVRDAERALKALNRR 135 (549)
T ss_pred cccCccceEEE-EecCCcCC-HHHHHHHHHhhcchhhhhcccccC------------ceEEEEEeehHhHHHHHHHHHHH
Confidence 44777889999 59999998 899999999999999988776653 789999999999999985 477
Q ss_pred ccCCceeE
Q 048615 537 SWQGHDLQ 544 (634)
Q Consensus 537 ~~~g~~l~ 544 (634)
.|.|++++
T Consensus 136 ~~~~~~~k 143 (549)
T KOG4660|consen 136 EIAGKRIK 143 (549)
T ss_pred Hhhhhhhc
Confidence 77776666
No 159
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.13 E-value=0.075 Score=50.26 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=59.2
Q ss_pred CCCCCEEEEeCCCCC---CCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeec
Q 048615 173 QKALRTLFVNNVPLK---SNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWAN 248 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d---~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak 248 (634)
.++..||.|.=|... .-+-..+....+.||+|.+|.+ ..+.-|.|.|.+..+|-+|+.++.....|..+.|+|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 456789999766552 1223334456678999999874 67789999999999999999999988889999999975
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.066 Score=60.16 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=56.5
Q ss_pred CCEEEEeCCCCCCCCH-------HHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC--ccCCeE
Q 048615 176 LRTLFVNNVPLKSNRR-------EALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA--VMGNRF 241 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te-------~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng--~l~gR~ 241 (634)
...|+|.|+|- +-. .-|..+|+++|+|+++.++.+ +||.|++|.+..+|..|++.++| ...++.
T Consensus 58 D~vVvv~g~Pv--V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPV--VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcc--cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 35888999986 232 345689999999999999875 36999999999999999999999 345777
Q ss_pred EEEEee
Q 048615 242 IKLWWA 247 (634)
Q Consensus 242 IkV~wa 247 (634)
+.|.--
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777543
No 161
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.85 E-value=0.021 Score=63.76 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=50.2
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
.+..+|+-||++-..+++...+..- .+.||||.+.+.++| +.|..|+-++|+||-|-|..+....
T Consensus 421 DLKnlFSKyGKVvGAKVVTNaRsPG---aRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 421 DLKNLFSKYGKVVGAKVVTNARSPG---ARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred HHHHHHHHhcceeceeeeecCCCCC---cceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 3445667777766666664433332 288999999999999 9999999999999999999876544
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.60 E-value=0.06 Score=60.80 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhcc-CCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCc----cCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQK-FGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAV----MGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~Fsk-fG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~----l~gR~IkV~wak 248 (634)
+....|||.||-.- +|.-+|+.+..+ .|.|....|.+-+..|||.|.+.++|...+.+|+|+ -+.++|-+.|+.
T Consensus 442 ~~SnvlhI~nLvRP-FTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRP-FTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeeccccc-chHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 44678999999885 899999999995 566667666555678999999999999999999992 567999999985
Q ss_pred C
Q 048615 249 R 249 (634)
Q Consensus 249 ~ 249 (634)
.
T Consensus 521 ~ 521 (718)
T KOG2416|consen 521 A 521 (718)
T ss_pred h
Confidence 4
No 163
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.39 E-value=0.099 Score=51.88 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=48.4
Q ss_pred CHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC--C-ccCCeEEEEEeecCCC
Q 048615 190 RREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD--A-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 190 te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln--g-~l~gR~IkV~wak~~~ 251 (634)
....|+.+|..|+.+......+.-+...|.|.+.+.|..|...++ + .++|..|+|+|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 567899999999999999888888899999999999999999999 7 7999999999995443
No 164
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=94.39 E-value=0.021 Score=63.13 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=54.4
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
++|+| +....+...+.++|..+|.|+...+.....+++...||||+|.+.+++ .||.. +-..+++|++.|..-.
T Consensus 291 i~V~n-lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 291 IFVKN-LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred eEeec-CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34444 444566666777777777777666665555556569999999999999 88866 6888999999997443
No 165
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=0.12 Score=54.28 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=51.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCcc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSW 538 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~ 538 (634)
.|---+=|.|-|+-|. - ..-|..||..||+|.+++...+. +...|.|..|.+|.||+.+ |+.|
T Consensus 193 ~d~~D~WVTVfGFppg-~--~s~vL~~F~~cG~Vvkhv~~~ng-------------NwMhirYssr~~A~KALskng~ii 256 (350)
T KOG4285|consen 193 ADAADTWVTVFGFPPG-Q--VSIVLNLFSRCGEVVKHVTPSNG-------------NWMHIRYSSRTHAQKALSKNGTII 256 (350)
T ss_pred cccccceEEEeccCcc-c--hhHHHHHHHhhCeeeeeecCCCC-------------ceEEEEecchhHHHHhhhhcCeee
Confidence 4555677777555333 2 45899999999999999887554 8999999999999999976 7777
Q ss_pred CC
Q 048615 539 QG 540 (634)
Q Consensus 539 ~g 540 (634)
.|
T Consensus 257 ~g 258 (350)
T KOG4285|consen 257 DG 258 (350)
T ss_pred cc
Confidence 65
No 166
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.47 E-value=0.19 Score=57.88 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=57.6
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEE-EEEec-CC----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVD-IYIPL-NS----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~-v~v~~-dk----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+.|-|.|+|++ ++.++|.++|..|-.+-+ |.+.+ |. |-|.|-|++.++|..|...+++ .|.+|.|+|.+
T Consensus 868 ~V~~~~n~Pf~-v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFD-VTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCcc-ccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47889999996 999999999999965543 33333 22 4799999999999999999999 89999999865
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.29 E-value=0.2 Score=47.53 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=55.2
Q ss_pred cceEEEcCCCCCCCC---CHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccC
Q 048615 464 PTAFRIMPPLPVGFA---DVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQ 539 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~---~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~ 539 (634)
--||.| -=|.-++. |...+.+.++.||.|.+|.+-.. .+|+|.|++-.+|=+|+.. ....+
T Consensus 86 MsTIVV-RWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--------------qsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 86 MSTIVV-RWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--------------QSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred ceeEEe-ehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--------------ceEEEEehhhHHHHHHHHhhcCCCC
Confidence 345555 34444433 24567788999999999987654 5899999999999999864 77899
Q ss_pred CceeEEEEeCC
Q 048615 540 GHDLQFTWLMP 550 (634)
Q Consensus 540 g~~l~l~W~~~ 550 (634)
|..++.+|...
T Consensus 151 gtm~qCsWqqr 161 (166)
T PF15023_consen 151 GTMFQCSWQQR 161 (166)
T ss_pred CceEEeecccc
Confidence 99999999754
No 168
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=0.17 Score=56.56 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhh-cccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFS-SYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~-~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
.||+| +||+| |+||--++ .++|-..|. -||-|..|-|.-+ ...+-++ +++.|+|.+-++==+|+..
T Consensus 366 ~lDpr-rTVFV-Ggvprpl~-A~eLA~imd~lyGgV~yaGIDtD------~k~KYPk-GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPR-RTVFV-GGLPRPLT-AEELAMIMEDLFGGVLYVGIDTD------PKLKYPK-GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcc-ceEEe-cCCCCcch-HHHHHHHHHHhcCceEEEEeccC------cccCCCC-CcceeeecccHHHHHHHhh
Confidence 48887 56788 99999997 899999998 8999999988654 2456566 7999999988777777543
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.04 E-value=0.04 Score=56.60 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=47.1
Q ss_pred HHHHhhc-cCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 193 ALLSHFQ-KFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 193 ~L~~~Fs-kfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+|...|+ +||+|.++.|-.+. |-+||.|...++|++|++.||+ .++|++|.+.+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999999776654 5799999999999999999999 8999999999863
No 170
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=0.26 Score=51.86 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCccCCe-EEEEEee
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNR-FIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~l~gR-~IkV~wa 247 (634)
..-|-|.+.|+. .-..|..+|++||.|++.....+-.+-+|.|.++-+|.+||....-+|+|. .|-|.-+
T Consensus 197 D~WVTVfGFppg--~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPG--QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCcc--chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 467888899995 778899999999999998777555699999999999999997654477764 4556554
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.86 E-value=0.12 Score=54.87 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=45.6
Q ss_pred ccceeeecceeeeeccccc-cCCCcCceE--EEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 91 MSVWGRIGSSKNRSNVKEK-IDATLNSLD--YLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 91 ~svfg~Ig~V~~~~~~k~k-~~~~s~Gfg--FVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
...||++|.+..+..-+.. ......+.+ ||.|.++|+| ++|.+.+|..++||-|+..+...+
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCchH
Confidence 4568888876554332322 222334433 9999999999 999999999999999999877654
No 172
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.51 E-value=0.048 Score=57.97 Aligned_cols=72 Identities=18% Similarity=0.370 Sum_probs=59.8
Q ss_pred CEEEEeCCCCCCCCHHHHH--HhhccCCCEEEEEEecCC----C-----eEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 177 RTLFVNNVPLKSNRREALL--SHFQKFGEVVDIYIPLNS----E-----RAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~--~~FskfG~I~~v~v~~dk----g-----~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
.-+||-+|+.+..++..|. ++|.+||.|..|.+..+. + -++|+|...++|..||...+| +++||.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4678888988645555565 689999999999988765 1 489999999999999999999 789999888
Q ss_pred Eeec
Q 048615 245 WWAN 248 (634)
Q Consensus 245 ~wak 248 (634)
.++.
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 8764
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.97 E-value=0.18 Score=54.48 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=59.2
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC---------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS---------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk---------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
..|.|.||.+ +++.+++..+|.-.|.|..+.++++. ..|||.|.+...+..|-...|.++=++.|-|-.+
T Consensus 8 ~vIqvanisp-sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISP-SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCc-hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 4899999999 59999999999999999999998743 3799999999999988777777766666666544
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.47 E-value=0.76 Score=37.65 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=43.8
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccC---CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKF---GEVVDIYIPLNSERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~Fskf---G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~l 233 (634)
.+|+|.|+.. ++.++++.+|..| .....|..+-| .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~--lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE--LSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC--CCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4899999976 8999999999998 12446666655 45889999999999999875
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.06 E-value=0.64 Score=44.40 Aligned_cols=57 Identities=26% Similarity=0.460 Sum_probs=45.5
Q ss_pred HHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccCCceeEEE-----EeCCC
Q 048615 480 VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQGHDLQFT-----WLMPS 551 (634)
Q Consensus 480 ~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~g~~l~l~-----W~~~~ 551 (634)
...|.+-|.+||++.-|++.++ +..|||.+-++|=+|+. .|..+.|+.|+|+ |...-
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~~---------------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~~~l 112 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVGD---------------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWLKGL 112 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEETT---------------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---------
T ss_pred HHHHHHHHHhCCceEEEEEeCC---------------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHHHHH
Confidence 4689999999999999988864 59999999999999986 4999999999987 76543
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.64 E-value=0.16 Score=57.27 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=47.3
Q ss_pred cccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCE-EEEEc
Q 048615 90 SMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGK-RIIEG 147 (634)
Q Consensus 90 ~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR-~I~V~ 147 (634)
+..+|.++|.+.++..+-+..++ .+||.|++|.+..+| .|++.+||..|+-. +..|.
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 56789999998888888776665 499999999999999 99999999988654 34554
No 177
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.36 E-value=0.41 Score=49.74 Aligned_cols=72 Identities=24% Similarity=0.424 Sum_probs=50.7
Q ss_pred CEEEEeCCCCCC-----------CCHHHHHHhhccCCCEEEEEEec-CC---------------Ce---------EEEEe
Q 048615 177 RTLFVNNVPLKS-----------NRREALLSHFQKFGEVVDIYIPL-NS---------------ER---------AFVQF 220 (634)
Q Consensus 177 ~tLfVgnLp~d~-----------~te~~L~~~FskfG~I~~v~v~~-dk---------------g~---------AFV~F 220 (634)
.|||+.+||..| -+++-|+..|..||.|.+|.|+. |+ +| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 489999988532 45788999999999999998864 32 12 56777
Q ss_pred CCHHHHHHHHHcCCC-----ccCCeE----EEEEeec
Q 048615 221 SKREEAEAALKSPDA-----VMGNRF----IKLWWAN 248 (634)
Q Consensus 221 ~s~e~A~~Ai~~lng-----~l~gR~----IkV~wak 248 (634)
-..-....|+.++.| .+++++ ++|+|.+
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDR 266 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccch
Confidence 766666677777766 244543 6777764
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.20 E-value=0.9 Score=43.38 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=50.4
Q ss_pred CCEEEEeCCC----CC-CCC---HHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 176 LRTLFVNNVP----LK-SNR---REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp----~d-~~t---e~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
..||.|.=+. .+ .++ -.+|.+.|..||+|+-||+.-+ .-+|+|.+-..|.+|+..-...++|+.|+|..-
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHccCCcEECCEEEEEEeC
Confidence 4577776444 11 123 2367889999999998887764 789999999999999975444899999999877
Q ss_pred cCC
Q 048615 248 NRD 250 (634)
Q Consensus 248 k~~ 250 (634)
.++
T Consensus 105 tpd 107 (146)
T PF08952_consen 105 TPD 107 (146)
T ss_dssp ---
T ss_pred Ccc
Confidence 654
No 179
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=89.97 E-value=0.31 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 115 NSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 115 ~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.+.|+|.|.+.+.| +|.+.|+|..+.|++|.|.+..
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 67899999999999 9999999999999999999774
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.57 E-value=0.45 Score=49.90 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=36.7
Q ss_pred ceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEcc
Q 048615 93 VWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGD 148 (634)
Q Consensus 93 vfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~ 148 (634)
-||+++.|.+-.++-...+.. ---||+|...+.| +|+..|||++|+||.++..+
T Consensus 309 Kyg~V~~viifeip~~p~dea--vRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 309 KYGKVGNVIIFEIPSQPEDEA--VRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred hhcceeeEEEEecCCCccchh--heeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 345555544443322222211 1369999999999 99999999999999877543
No 181
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.68 E-value=0.12 Score=60.88 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=61.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||++||+.. +++.+|+..|..||.|.+|.|...+ -|+||.|.+...+-.|...+.+ .|..-.+++-+.
T Consensus 370 ~atrTLf~Gnl~~k-l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSK-LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccc-hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34789999999995 9999999999999999999986642 3999999999999999999988 454435555555
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.60 E-value=0.43 Score=52.21 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=57.9
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC--ccCCeEEEEEeecC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA--VMGNRFIKLWWANR 249 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng--~l~gR~IkV~wak~ 249 (634)
.++|++||.+. .+..+|..+|...---.+-.++...+|+||.+.+..-|.+|++.++| .+.|.++.|...-+
T Consensus 2 nklyignL~p~-~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQ-VTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCC-CChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 37999999995 99999999998642111222344568999999999999999999999 58899999988743
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.24 E-value=2.3 Score=34.93 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcc---cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSY---GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~f---Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
-||.+|.|.|. ++++ -++++.||..| .....|+--++ .++-|-|.+-..|-+|+..
T Consensus 3 ~rpeavhirGv--d~ls-T~dI~~y~~~y~~~~~~~~IEWIdD--------------tScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 3 IRPEAVHIRGV--DELS-TDDIKAYFSEYFDEEGPFRIEWIDD--------------TSCNVVFKDEETAARALVA 61 (62)
T ss_pred ceeceEEEEcC--CCCC-HHHHHHHHHHhcccCCCceEEEecC--------------CcEEEEECCHHHHHHHHHc
Confidence 48899999753 4454 78999999988 23557765554 4788999999999999863
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=86.95 E-value=0.2 Score=51.52 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=39.7
Q ss_pred eecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccC
Q 048615 96 RIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 96 ~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a 149 (634)
++|+|..+ .+-+....-..|-.||.|...++| .|+..|||.++.|++|.....
T Consensus 92 kygEiee~-~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEEL-NVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred Hhhhhhhh-hhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44444443 122333334578899999999999 999999999999999998754
No 185
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=86.86 E-value=1.1 Score=40.05 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=34.5
Q ss_pred eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeC----CEEEEEccCc
Q 048615 100 SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRR----GKRIIEGDAI 150 (634)
Q Consensus 100 V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~----GR~I~V~~a~ 150 (634)
+-...|.+.+.+ .|||||.|.+.+.| +-...++|+.|. .+...|.+|.
T Consensus 33 ~YLPiDf~~~~N---~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 33 FYLPIDFKNKCN---LGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred EEeeeeccCCCc---eEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 333444444444 89999999999999 999999998874 3444566554
No 186
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.79 E-value=0.37 Score=56.65 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecC
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANR 249 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~ 249 (634)
+.++.|.+- ..+...|..+|++||.|.+++..++-..|.|+|.+.+.|..|+.+++| .+.|-+.+|.||+.
T Consensus 300 ~~~~~nn~v-~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAV-NLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccc-cchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455556666 478899999999999999999999999999999999999999999999 26688999999974
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.05 E-value=2.1 Score=48.46 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=69.9
Q ss_pred CHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhcc--
Q 048615 124 TKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQK-- 200 (634)
Q Consensus 124 ~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~Fsk-- 200 (634)
|.+-. +++.+.-+..++.+-.+|.... ..|-|.++-||. +.-+++++.+|..
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~------------------------kRcIvilREIpe-ttp~e~Vk~lf~~en 200 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH------------------------KRCIVILREIPE-TTPIEVVKALFKGEN 200 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc------------------------ceeEEEEeecCC-CChHHHHHHHhccCC
Confidence 33444 7777777777766666655221 136788899999 5899999999985
Q ss_pred CCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEE
Q 048615 201 FGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIK 243 (634)
Q Consensus 201 fG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~Ik 243 (634)
+-.+++|....+.+ =||+|.+..+|+.|++.+.. .|-|++|.
T Consensus 201 cPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 201 CPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 77888888766655 49999999999999998865 46676544
No 188
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.48 E-value=2.4 Score=44.77 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=60.3
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc--------
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-------- 534 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-------- 534 (634)
|++.|.. -.+...+. --.+..+|..||-|++|-+-+..+..+++--+-..++|..++|-+|...=.+..+
T Consensus 14 rTRSLLf-eNv~~sid-Lh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 14 RTRSLLF-ENVNNSID-LHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred eeHHHHH-hhcccccc-HHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 5777777 35555553 6789999999999999999887632222222223348999999999988776432
Q ss_pred CCccCCceeEEEEeC
Q 048615 535 GKSWQGHDLQFTWLM 549 (634)
Q Consensus 535 g~~~~g~~l~l~W~~ 549 (634)
.+..+...|.|+++.
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 445677888888877
No 189
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=83.36 E-value=0.69 Score=49.04 Aligned_cols=72 Identities=8% Similarity=0.073 Sum_probs=60.5
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+.+++...|+..+.+..++.+....++...|||||.|.....+ .++.. +...+.++++++....+.+
T Consensus 193 ~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 193 LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 555677788778888888888888888888888999999999999998 88876 8899999999999776543
No 190
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.10 E-value=1.8 Score=45.49 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=14.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 048615 325 PLQKKLDNLEQLKEELRKKQELLDQKR 351 (634)
Q Consensus 325 ~~~KkqE~le~~~e~~kkKqelL~kq~ 351 (634)
.+++||++|+++++++++|.+-|+++.
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~ELdRRE 87 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQELDRRE 87 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 355566666666666555544444443
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=79.12 E-value=6.1 Score=34.44 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=39.5
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln 234 (634)
...+|. .|.+ ....+|.++|+.||.|.---| +-.-|||....++.|..|+..+.
T Consensus 10 HVFhlt-FPke-WK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKE-WKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT---HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchH-hhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 345555 8996 899999999999999754333 34579999999999999988764
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=78.77 E-value=3.3 Score=40.84 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhcc-CCCE---EEEEEec-CC-------CeEEEEeCCHHHHHHHHHcCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQK-FGEV---VDIYIPL-NS-------ERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fsk-fG~I---~~v~v~~-dk-------g~AFV~F~s~e~A~~Ai~~lng 235 (634)
..+|.|++||+ +++++++.+.++. ++.. ..+.-.. +. ..|||.|.+.++...-+..++|
T Consensus 7 ~~KvVIR~LPP-~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 7 GTKVVIRRLPP-NLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp --EEEEEEE-T-TS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred CceEEEeCCCC-CCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 57999999999 5999999998887 7766 3333111 11 2799999999999999999998
No 193
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.90 E-value=3.1 Score=34.91 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=25.8
Q ss_pred eeecceeeeeccccccCCCcCceEEEEcCCHHHHHHHhccCCceeCCEEEEEccC
Q 048615 95 GRIGSSKNRSNVKEKIDATLNSLDYLENETKEDREALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 95 g~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a 149 (634)
..||.+++. .-|.||+-......+++..|++..+.||+++|..|
T Consensus 31 ~~IG~I~I~-----------~~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 31 RDIGRIDIF-----------DNFSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGEEEEEE------------SS-EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred HhEEEEEEe-----------eeEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 346776664 56899997776444999999999999999998754
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=71.35 E-value=11 Score=37.58 Aligned_cols=60 Identities=30% Similarity=0.405 Sum_probs=44.2
Q ss_pred HHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc----CCccCCceeEEEEeCCCC
Q 048615 480 VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS----GKSWQGHDLQFTWLMPSS 552 (634)
Q Consensus 480 ~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~----g~~~~g~~l~l~W~~~~~ 552 (634)
...|+.+|.+|+.+..+.+-..- .-++|.|.+..+|++|... +..|.|..|++-.+.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF-------------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF-------------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT-------------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCCC-------------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 68999999999999888766654 6899999999999999865 778999888888775443
No 195
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=71.26 E-value=2.9 Score=44.90 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCC--CEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFG--EVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRF 241 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG--~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~ 241 (634)
...+|||||-| |+|+++|.+.....| .|.+++++.+ +|||+|...+.++.++-++-|-. .|.|..
T Consensus 80 k~~~YvGNL~W-~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLW-YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeE-EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 35899999999 899999998888766 4555555544 47999999999999999988876 676643
No 196
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=65.33 E-value=8.7 Score=41.60 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEec--CCccccCCCCCCCCCCceEEEEecChHHHHHHHHc--CC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELE--DGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS--GK 536 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~--~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~--g~ 536 (634)
++..-+|+| =.||..++ +.+|-+||.+.|.|..=+-. +....+.+..-..++ ..+.|+|.+-.+|-.|... ++
T Consensus 63 ~s~~~ti~v-~g~~d~~~-~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~K-GeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFV-WGCPDSVC-ENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPK-GEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccee-eccCccch-HHHHHHHHhhcceeccCCCCCCcchhccccccccCcC-CceeeeecChhhhhhhhhhhccc
Confidence 556778999 47899887 89999999999998654433 222222222122234 7899999999999999764 99
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.+..+++.-..-.+.
T Consensus 140 df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCCCchhhhhhhccC
Confidence 99998887765554443
No 197
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.11 E-value=20 Score=41.23 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccC----CCEEEEEEecC--------------C-----------------------
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKF----GEVVDIYIPLN--------------S----------------------- 213 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~Fskf----G~I~~v~v~~d--------------k----------------------- 213 (634)
..++|-|.|+.|+.+...+|.-+|+.| |.|.+|.|.+. +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 357899999999999999999999876 68999888641 1
Q ss_pred ----------------CeEEEEeCCHHHHHHHHHcCCC-ccC--CeEEEEEee
Q 048615 214 ----------------ERAFVQFSKREEAEAALKSPDA-VMG--NRFIKLWWA 247 (634)
Q Consensus 214 ----------------g~AFV~F~s~e~A~~Ai~~lng-~l~--gR~IkV~wa 247 (634)
-||.|+|.+.+.|.+.+..++| .+. +..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1799999999999999999999 555 455555554
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.14 E-value=2.2 Score=39.96 Aligned_cols=106 Identities=19% Similarity=0.122 Sum_probs=72.0
Q ss_pred ccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccc
Q 048615 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQND 163 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d 163 (634)
.-...+..+|+..+.+..... ..++..+.|.+.+++ +++ ......+.|..|.+..-.+........
T Consensus 33 ~l~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~~~---- 99 (153)
T PF14111_consen 33 ALEQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSEVK---- 99 (153)
T ss_pred HHHHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcccccccccc----
Confidence 344456778888777666533 268899999999999 555 445666777777777554322111100
Q ss_pred cccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec
Q 048615 164 HMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL 211 (634)
Q Consensus 164 ~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~ 211 (634)
......-|.|.|||....+++-|+.+-+.+|.+..+....
T Consensus 100 --------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 100 --------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred --------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0001245677899997788999999999999999987654
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.52 E-value=32 Score=28.55 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 188 SNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 188 ~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
.++-++++..+.+|+- . +|..++--=||.|.+..+|+++....+| .+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4688899999999964 3 3445665568999999999999999998 555555543
No 200
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.01 E-value=38 Score=37.88 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 048615 331 DNLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQAG 366 (634)
Q Consensus 331 E~le~~~e~~kkKqelL~kq~eeqk~ll~kLek~~~ 366 (634)
++|+.+..++..+++-|.+.++|+++++.+|+.+..
T Consensus 185 ~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~ 220 (420)
T COG4942 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666667777777777777776543
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=60.68 E-value=26 Score=29.22 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCC-----EEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGE-----VVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~-----I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
++||.-=-.+.++..+|..++...+. |-.|+|.. .|+||+-.. +.|..++..+++ .+.|+.|+|..|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553222234788889888887654 55666644 588888764 478889999998 799999999754
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=59.80 E-value=86 Score=28.62 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=48.1
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEecCCC----eEEEEeCCHHHHHHHHHcCCC-ccC---CeEEEEEee
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPLNSE----RAFVQFSKREEAEAALKSPDA-VMG---NRFIKLWWA 247 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~dkg----~AFV~F~s~e~A~~Ai~~lng-~l~---gR~IkV~wa 247 (634)
++|.|--+|+..++.++|..+.+.+- .|..++|+++.. .+++.|.+.+.|..-...+|| .++ .....|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 45555455553455566665555553 577888888643 799999999999999999999 443 444444443
No 203
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=11 Score=39.97 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 332 NLEQLKEELRKKQELLDQKRNDFRRQLDKLEK 363 (634)
Q Consensus 332 ~le~~~e~~kkKqelL~kq~eeqk~ll~kLek 363 (634)
++.+++.++.+|||-|+++-+|++|.-+.|..
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 34545555555555556666666665554443
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.78 E-value=22 Score=39.79 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=57.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccC-CCEEEEEEecCC----CeEEEEeCCHHHHHHHHHcCCC-ccC---CeEEEEEe
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKF-GEVVDIYIPLNS----ERAFVQFSKREEAEAALKSPDA-VMG---NRFIKLWW 246 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fskf-G~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai~~lng-~l~---gR~IkV~w 246 (634)
.+.|+|-.+|- +++-.+|..|...| -.|.+|+|++|. -..+|.|.+.++|..-...+|| .|+ --...|-|
T Consensus 74 ~~mLcilaVP~-~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPA-YMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccc-cccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 57999999999 69999999998875 468899999864 2689999999999999999999 444 33444444
Q ss_pred e
Q 048615 247 A 247 (634)
Q Consensus 247 a 247 (634)
.
T Consensus 153 V 153 (493)
T KOG0804|consen 153 V 153 (493)
T ss_pred E
Confidence 4
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=58.01 E-value=68 Score=29.30 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=56.2
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcc-cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSY-GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~f-Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.+.|.+.+.|.. .|+.....+.|..+...+ ..|+.+.+-.+.. ++. .-+.|+|.+-.+|..+.. +|+
T Consensus 8 ~~~~~~~~~~l~-vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--------pnr-ymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 8 PDERRSTLCCLA-VPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--------PNR-YMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred CCCCCceEEEEE-eCcccccHHHHHHhhhcccccEEEEEEeeCCC--------Cce-EEEEEEECCHHHHHHHHHHhCCC
Confidence 466677777764 455555466666555444 4677787765542 111 578889999999999875 599
Q ss_pred ccCC---ceeEEEEeCCCC
Q 048615 537 SWQG---HDLQFTWLMPSS 552 (634)
Q Consensus 537 ~~~g---~~l~l~W~~~~~ 552 (634)
.|.. ...++.|+....
T Consensus 78 ~FnslEpE~ChvvfV~~Ve 96 (110)
T PF07576_consen 78 PFNSLEPETCHVVFVKSVE 96 (110)
T ss_pred ccCCCCCceeEEEEEEEEE
Confidence 8864 668888887654
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.55 E-value=6 Score=45.91 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+..++||+||-. .+..+-++.+...+|.|..+.... |||..|..+.....|+..+.- .++|..+-+.-
T Consensus 39 ~~~~vfv~~~~~-~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISY-LVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhh-hhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 356999999999 599999999999999998775443 999999999999999998877 67777665543
No 207
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=55.15 E-value=15 Score=36.35 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=55.3
Q ss_pred CEEEEeCCCCCCCCH----HHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCe-EEEEEeecCC
Q 048615 177 RTLFVNNVPLKSNRR----EALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNR-FIKLWWANRD 250 (634)
Q Consensus 177 ~tLfVgnLp~d~~te----~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR-~IkV~wak~~ 250 (634)
+++++.+|+.+-.+. .....+|.+|-+..-.++++..++.-|-|.+.+.|..|...+.. .|.|. .++++|+.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 457777777642222 23446677776666666666677888999999999999999987 78877 9999999754
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 208
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=54.63 E-value=4.6 Score=46.29 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=42.8
Q ss_pred CCcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCcee
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYR 139 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l 139 (634)
|-.++.| |.--.++..+..+.|+-|.+..-+ -.+++ +..|||.|.+.++| .-+..|+|..|
T Consensus 445 nvlhI~n-LvRPFTlgQLkelL~rtgg~Vee~-WmDkI----KShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 445 NVLHIDN-LVRPFTLGQLKELLGRTGGNVEEF-WMDKI----KSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred ceEeeec-ccccchHHHHHHHHhhccCchHHH-HHHHh----hcceeEecccHHHHHHHHHHHhcccc
Confidence 4556666 443347888888888887754433 22332 56799999999999 88888888643
No 209
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.42 E-value=6.5 Score=42.25 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=41.0
Q ss_pred ccceeeecceeeeecccccc-CCCcC--ceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 91 MSVWGRIGSSKNRSNVKEKI-DATLN--SLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 91 ~svfg~Ig~V~~~~~~k~k~-~~~s~--GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
.+-||++|.+..+..-++.. ..... --+||.|...++| .||...+|..++||.++..+...
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 34466666655443333331 10111 1489999999999 99999999999999987775543
No 210
>PHA01750 hypothetical protein
Probab=51.22 E-value=23 Score=29.33 Aligned_cols=36 Identities=39% Similarity=0.579 Sum_probs=24.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 325 PLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDK 360 (634)
Q Consensus 325 ~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~k 360 (634)
..++.+.+|..+-+..++||.-|++|+++.|+.++|
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 344555566666666677777778888887776655
No 211
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=45.67 E-value=18 Score=40.12 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=47.5
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCc-cccCCCCCCC-----CCCceEEEEecChHHHHHHHH
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGE-VLEGDNGSDA-----SKNCQVRVSFTTRRSAERAFL 533 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~-~~~~~~~~~~-----~~~~~~~V~F~tR~~AE~A~~ 533 (634)
.++|.+ -.||..-. -+.|+..|..||.|.+|.|-.-. ..++..+-.. ..--||+|.|.+-.+|++|..
T Consensus 231 srtiva-enLP~Dh~-~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 231 SRTIVA-ENLPLDHS-YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cceEEE-ecCCcchH-HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 456666 68888665 68999999999999999975431 1111111111 013699999999999999964
No 212
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=41.62 E-value=21 Score=37.21 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=49.0
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCcccc-----CCCCCCCCCCceEEEEecChHHHHHHH--HcCC
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLE-----GDNGSDASKNCQVRVSFTTRRSAERAF--LSGK 536 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~-----~~~~~~~~~~~~~~V~F~tR~~AE~A~--~~g~ 536 (634)
+=.|++ +.+|+-+. ..-||+.|.+||+|-.|=+-+...-- -..+.....=.-+-|.|..-..|-+-+ +++.
T Consensus 74 ~GVvyl-S~IPp~m~-~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 74 TGVVYL-SNIPPYMD-PVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ceEEEe-ccCCCccC-HHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 335676 79999995 99999999999999998887653100 000111111123556677777777654 4677
Q ss_pred ccCCc
Q 048615 537 SWQGH 541 (634)
Q Consensus 537 ~~~g~ 541 (634)
.|.|+
T Consensus 152 ~Iggk 156 (278)
T KOG3152|consen 152 PIGGK 156 (278)
T ss_pred ccCCC
Confidence 77764
No 213
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.75 E-value=1.2e+02 Score=34.93 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.8
Q ss_pred ccccCCCcceEEEcCC
Q 048615 457 RYKLDNRPTAFRIMPP 472 (634)
Q Consensus 457 ~~~lDnr~t~l~V~~~ 472 (634)
-+-+|..|-+|.||++
T Consensus 237 d~iiddtp~~v~ls~f 252 (514)
T TIGR03319 237 DLIIDDTPEAVILSGF 252 (514)
T ss_pred eEEEcCCCCeEEecCC
Confidence 3678999999999844
No 214
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=40.30 E-value=62 Score=29.15 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 048615 349 QKRNDFRRQLDKLEK 363 (634)
Q Consensus 349 kq~eeqk~ll~kLek 363 (634)
++++.++..|++|++
T Consensus 83 ~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 83 EEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333336666666654
No 215
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=39.34 E-value=79 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=30.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 325 PLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLE 362 (634)
Q Consensus 325 ~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLe 362 (634)
+++.+-++|..-++..++.++.+..+.++.|.+|.+|.
T Consensus 28 ~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~ 65 (68)
T PF11577_consen 28 AMKERFEELLAWQEKQKEEREFLERKFQEARELVERLK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777777778888888888888888888888875
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=39.09 E-value=75 Score=27.97 Aligned_cols=70 Identities=14% Similarity=-0.034 Sum_probs=40.4
Q ss_pred EEEEcCCHHHHHHHhccCCce--eCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHH
Q 048615 118 DYLENETKEDREALPSLQGSY--RRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALL 195 (634)
Q Consensus 118 gFVeF~~~e~A~Ai~~mnG~~--l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~ 195 (634)
|.|.|.+..-|+-|..|.-.. +++..++|....-... ...+-.- ....+.++|-|.|||.. ++++.|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-~~~k~qv--------~~~vs~rtVlvsgip~~-l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-HLQKFQV--------FSGVSKRTVLVSGIPDV-LDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-CceEEEE--------EEcccCCEEEEeCCCCC-CChhhhe
Confidence 579999999995555554433 4566655542211100 0000000 01123579999999994 9999998
Q ss_pred Hh
Q 048615 196 SH 197 (634)
Q Consensus 196 ~~ 197 (634)
+.
T Consensus 71 D~ 72 (88)
T PF07292_consen 71 DK 72 (88)
T ss_pred ee
Confidence 64
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.54 E-value=36 Score=35.88 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=33.9
Q ss_pred ccccCCCcceEEEcCCCC--------CCCC---CHHHHHHHhhcccceeEEEecCCccccC
Q 048615 457 RYKLDNRPTAFRIMPPLP--------VGFA---DVAVLKEHFSSYGDLASVELEDGEVLEG 506 (634)
Q Consensus 457 ~~~lDnr~t~l~V~~~l~--------~~~~---~~~~L~~hF~~fGei~sv~~~~~~~~~~ 506 (634)
-++-..||-||.+ .++| +|.. .++.|+.-|..||+|..|.++-+.+.-.
T Consensus 142 emkpgerpdti~l-a~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~ 201 (445)
T KOG2891|consen 142 EMKPGERPDTIHL-AGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLRE 201 (445)
T ss_pred ccCCCCCCCceee-cCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHH
Confidence 3444566666666 4554 2222 2789999999999999999987765433
No 218
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=36.88 E-value=89 Score=23.51 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHH
Q 048615 329 KLDNLEQLKEELRK-KQELLDQK 350 (634)
Q Consensus 329 kqE~le~~~e~~kk-KqelL~kq 350 (634)
|||-|+-.+.++.| |+|+++--
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA~ 31 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEAI 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333 44444433
No 219
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.66 E-value=2.5e+02 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHhCCCchhhhHHHHHHHHhhh
Q 048615 360 KLEKQAGGKSDVVSEKAAKRLKVGI 384 (634)
Q Consensus 360 kLek~~~~k~~~~~~~~~ktlk~~~ 384 (634)
+|++-.+|..++-...-++.+..++
T Consensus 139 ~Le~iAglT~eEAk~~Ll~~le~e~ 163 (201)
T PF12072_consen 139 ELEEIAGLTAEEAKEILLEKLEEEA 163 (201)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3444444433333333244444433
No 220
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.20 E-value=79 Score=32.02 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=19.1
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 048615 330 LDNLEQLK---EELRKKQELLDQKRNDFRRQ 357 (634)
Q Consensus 330 qE~le~~~---e~~kkKqelL~kq~eeqk~l 357 (634)
+|++++++ +++.||||.|+++|+++...
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~ 50 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVEN 50 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 56788999999998887443
No 221
>PF14282 FlxA: FlxA-like protein
Probab=33.14 E-value=66 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048615 347 LDQKRNDFRRQLDKLEK 363 (634)
Q Consensus 347 L~kq~eeqk~ll~kLek 363 (634)
|++||..+...|..|..
T Consensus 24 L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 24 LQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34444444444444443
No 222
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.63 E-value=1.2e+02 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=13.3
Q ss_pred ceEEEEecChHHHHHHHHcCC
Q 048615 516 CQVRVSFTTRRSAERAFLSGK 536 (634)
Q Consensus 516 ~~~~V~F~tR~~AE~A~~~g~ 536 (634)
+-|..-|..|..-|.-|.-|-
T Consensus 696 yrAly~FeaRs~dEisf~pGD 716 (1118)
T KOG1029|consen 696 YRALYPFEARSHDEISFEPGD 716 (1118)
T ss_pred EeeecccccCCcccccccCCC
Confidence 445566777777777665544
No 223
>PRK00106 hypothetical protein; Provisional
Probab=31.40 E-value=2.2e+02 Score=33.17 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.8
Q ss_pred ccccCCCcceEEEcCC
Q 048615 457 RYKLDNRPTAFRIMPP 472 (634)
Q Consensus 457 ~~~lDnr~t~l~V~~~ 472 (634)
-+-+|-.|-+|.||++
T Consensus 258 dliiddtp~~v~lS~f 273 (535)
T PRK00106 258 DVIIDDTPEVVVLSGF 273 (535)
T ss_pred eEEEcCCCCeEEEeCC
Confidence 3678999999999843
No 224
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.00 E-value=71 Score=26.32 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.7
Q ss_pred HHHHHHHhhcccceeEEEecCCc
Q 048615 480 VAVLKEHFSSYGDLASVELEDGE 502 (634)
Q Consensus 480 ~~~L~~hF~~fGei~sv~~~~~~ 502 (634)
..+||++|+..|+|.-+=+.+..
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccc
Confidence 46899999999999888877765
No 225
>PRK12704 phosphodiesterase; Provisional
Probab=30.46 E-value=2.3e+02 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=13.4
Q ss_pred ccccCCCcceEEEcCCC
Q 048615 457 RYKLDNRPTAFRIMPPL 473 (634)
Q Consensus 457 ~~~lDnr~t~l~V~~~l 473 (634)
-.-+|-.|-.|.|+++-
T Consensus 243 d~iiddtp~~v~ls~~~ 259 (520)
T PRK12704 243 DLIIDDTPEAVILSGFD 259 (520)
T ss_pred eEEEcCCCCeEEEecCC
Confidence 36789999999998643
No 226
>PRK11637 AmiB activator; Provisional
Probab=29.52 E-value=1.6e+02 Score=32.90 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 333 LEQLKEELRKKQELLDQKRNDFRRQLDKLEKQ 364 (634)
Q Consensus 333 le~~~e~~kkKqelL~kq~eeqk~ll~kLek~ 364 (634)
|+.+...+++++.-|+.++.+++.+|.+|+++
T Consensus 196 l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~ 227 (428)
T PRK11637 196 QKTLLYEQQAQQQKLEQARNERKKTLTGLESS 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444444445555555556666543
No 227
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.43 E-value=1.1e+02 Score=21.87 Aligned_cols=19 Identities=42% Similarity=0.725 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048615 337 KEELRKKQELLDQKRNDFR 355 (634)
Q Consensus 337 ~e~~kkKqelL~kq~eeqk 355 (634)
.|.+++++|.|+.++++++
T Consensus 10 keqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555544444443
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.34 E-value=67 Score=34.26 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=56.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-------------CeEEEEeCCHHHHHHHH----HcCCC---
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-------------ERAFVQFSKREEAEAAL----KSPDA--- 235 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-------------g~AFV~F~s~e~A~~Ai----~~lng--- 235 (634)
.|.|...|+..+ ++-..+...|-+||.|..|.++.+. ....+.|-+++.+..-. +.+.-
T Consensus 15 TRSLLfeNv~~s-idLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNS-IDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhcccc-ccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467888999985 9999999999999999999999865 47889999988865433 33322
Q ss_pred ccCCeEEEEEeec
Q 048615 236 VMGNRFIKLWWAN 248 (634)
Q Consensus 236 ~l~gR~IkV~wak 248 (634)
.+....|+|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4667778888774
No 229
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=29.31 E-value=24 Score=38.27 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=47.0
Q ss_pred CCcccccCCCccccccccccceeeec--ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEc
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIG--SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEG 147 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig--~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~ 147 (634)
--|+|+|-.+.-+..+.+..+ ...| .+-.++.-..+.++.++|||.|...+.... +-|.-|--+.|+|..-.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 457888854444444433333 2222 122233345677889999999999887777 7888888888888764443
No 230
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=28.78 E-value=2.3e+02 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=37.9
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
|.--+.|+ .|.+-. -.+|.+.|..||.|.=-=|.| .+|+|....|..|..|+.-
T Consensus 8 RdHVFhlt--FPkeWK-~~DI~qlFspfG~I~VsWi~d---------------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT--FPKEWK-TSDIYQLFSPFGQIYVSWIND---------------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE----TT---HHHHHHHCCCCCCEEEEEECT---------------TEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe--CchHhh-hhhHHHHhccCCcEEEEEEcC---------------CcEEEEeecHHHHHHHHHH
Confidence 44567773 455543 789999999999984333333 4799999999999988753
No 231
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=27.17 E-value=52 Score=34.42 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=45.8
Q ss_pred ceEEEcCCCCCCCCCHHHHHHHhhcccceeEEE-ecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 465 TAFRIMPPLPVGFADVAVLKEHFSSYGDLASVE-LEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 465 t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~-~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
..|+| -.|...+. -|.|.+-|..||+|+.-+ +.|+.. ..+.-.+|-|..+-.|++|+..
T Consensus 32 a~l~V-~nl~~~~s-ndll~~~f~~fg~~e~av~~vD~r~---------k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYV-VNLMQGAS-NDLLEQAFRRFGPIERAVAKVDDRG---------KPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEE-Eecchhhh-hHHHHHhhhhcCccchheeeecccc---------cccccchhhhhcchhHHHHHHH
Confidence 78888 57777776 789999999999998643 333331 2236799999999999999875
No 232
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.29 E-value=2.3e+02 Score=32.12 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=64.3
Q ss_pred cccccCCCcceEEEcCCCCCCCCCHHHHHHHhhcc-cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-
Q 048615 456 NRYKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSY-GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL- 533 (634)
Q Consensus 456 ~~~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~f-Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~- 533 (634)
...+.|.+.+.|+|. .+|.-++ .-+|..+...| -.|..|.+..+...+- -.+.|+|++-.+|-.+..
T Consensus 66 ~s~~~~~~~~mLcil-aVP~~mt-~~Dll~F~~~~~~~I~~irivRd~~pnr---------ymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 66 SSLKNASSSTMLCIL-AVPAYMT-SHDLLRFCASFIKQISDIRIVRDGMPNR---------YMVLIKFRDQADADTFYEE 134 (493)
T ss_pred cccccCCCCcEEEEE-ecccccc-HHHHHHHHHHHhhhhheeEEeecCCCce---------EEEEEEeccchhHHHHHHH
Confidence 345677778999996 6799897 78888888777 4888888776543222 579999999999999885
Q ss_pred -cCCccCC---ceeEEEEeCC
Q 048615 534 -SGKSWQG---HDLQFTWLMP 550 (634)
Q Consensus 534 -~g~~~~g---~~l~l~W~~~ 550 (634)
+|+.|.. -..+|-|+..
T Consensus 135 fNGk~Fn~le~e~Chll~V~~ 155 (493)
T KOG0804|consen 135 FNGKQFNSLEPEVCHLLYVDR 155 (493)
T ss_pred cCCCcCCCCCccceeEEEEEE
Confidence 5998864 5677788773
No 233
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=24.14 E-value=1.3e+02 Score=34.83 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=45.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhc--ccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSS--YGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL 533 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~--fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~ 533 (634)
-|+.+.|.|+--+|..-- +|+++-.|.. .=-+.+|+.-.+ +.=+|||.+-.+|.+|+.
T Consensus 171 p~~kRcIvilREIpettp-~e~Vk~lf~~encPk~iscefa~N--------------~nWyITfesd~DAQqAyk 230 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTP-IEVVKALFKGENCPKVISCEFAHN--------------DNWYITFESDTDAQQAYK 230 (684)
T ss_pred cCcceeEEEEeecCCCCh-HHHHHHHhccCCCCCceeeeeeec--------------CceEEEeecchhHHHHHH
Confidence 466778888777776654 8999999985 346778877654 468999999999999985
No 234
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.11 E-value=2.7e+02 Score=21.65 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=44.0
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCH----HHHHHHHHc
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKR----EEAEAALKS 232 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~----e~A~~Ai~~ 232 (634)
|+.|.|+.-. .....++..+.+.-.|.++.+....+.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~-~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCE-GCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSH-HHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccH-HHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888885 67888999999999999999999989999999854 555666654
No 235
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.98 E-value=68 Score=36.70 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048615 340 LRKKQELLDQKRNDFRRQLDKLEKQAGG 367 (634)
Q Consensus 340 ~kkKqelL~kq~eeqk~ll~kLek~~~~ 367 (634)
++|+.+-|++|++++.++++|.|+....
T Consensus 36 L~kql~~Lk~q~~~l~~~v~k~e~~s~~ 63 (489)
T PF11853_consen 36 LKKQLEELKAQQDDLNDRVDKVEKHSAG 63 (489)
T ss_pred HHHHHHHHHHhhcccccccchhhHhhhc
Confidence 3333334444444555556666655433
No 236
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.66 E-value=1.2e+02 Score=34.47 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=21.6
Q ss_pred ccCCCcceEEEcC--CCCCCCCCHHHHHHHhh---cccceeE
Q 048615 459 KLDNRPTAFRIMP--PLPVGFADVAVLKEHFS---SYGDLAS 495 (634)
Q Consensus 459 ~lDnr~t~l~V~~--~l~~~~~~~~~L~~hF~---~fGei~s 495 (634)
.-|+-|-.|+|.+ .||.++ .-+|+.-|. .||+|+|
T Consensus 237 q~nP~Pv~lRi~~~aiLPN~~--~~dl~gC~v~gsa~GDLSS 276 (475)
T PRK13729 237 NESTVPMQLRITGLVEMPNSK--TYDATGCFVGLEAWGDVSS 276 (475)
T ss_pred cCCCccEEEEEcccccCCCCc--ccccCCcEEEEEEEeeccc
Confidence 3466666666654 355555 356666664 6788865
No 237
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.17 E-value=2.6e+02 Score=23.74 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=28.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 325 PLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLEK 363 (634)
Q Consensus 325 ~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLek 363 (634)
.+.++.++||-....+++--+-|...+.||.+.++|+..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ 43 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQA 43 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777777777777654
No 238
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.81 E-value=1.2e+02 Score=34.68 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=9.8
Q ss_pred CccccccCCCcceEEEc
Q 048615 454 LMNRYKLDNRPTAFRIM 470 (634)
Q Consensus 454 ~~~~~~lDnr~t~l~V~ 470 (634)
.+|.++.|-+.+.|..+
T Consensus 253 LPN~~~~dl~gC~v~gs 269 (475)
T PRK13729 253 MPNSKTYDATGCFVGLE 269 (475)
T ss_pred CCCCcccccCCcEEEEE
Confidence 34566666666655543
No 239
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.69 E-value=2e+02 Score=25.97 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048615 353 DFRRQLDKL 361 (634)
Q Consensus 353 eqk~ll~kL 361 (634)
+++.|-++|
T Consensus 73 qL~~Lk~kl 81 (100)
T PF04568_consen 73 QLKKLKEKL 81 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 240
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=21.77 E-value=3e+02 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Q 048615 334 EQLKEELRKKQELLDQKRNDFRRQLDKLEKQAGGKSDV 371 (634)
Q Consensus 334 e~~~e~~kkKqelL~kq~eeqk~ll~kLek~~~~k~~~ 371 (634)
.++++-.+.+|+||.+-++|+.-...+|......|.+.
T Consensus 35 rLlees~kAQq~mL~~FkeelE~iasrW~~dak~KAEk 72 (144)
T PRK13895 35 RLMQDSAKAQQEMLDQFKEELESIASRWGDDAKEKAER 72 (144)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555699999999999999999986554334433
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=1.1e+02 Score=33.97 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=41.9
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCE-EEEEEecCCCeEEEEeCCHHHHHHHHHc
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEV-VDIYIPLNSERAFVQFSKREEAEAALKS 232 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I-~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ 232 (634)
..|-|.++|.. ...++|...|..|+.- .+|..+ +.-.||-.|.+...|..|+-.
T Consensus 392 HVlEIydfp~e-fkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDE-FKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchh-hccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 57899999996 7778899999999752 233333 445799999999999999854
No 242
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.59 E-value=59 Score=37.15 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.5
Q ss_pred ceeEEEEeCCCC
Q 048615 541 HDLQFTWLMPSS 552 (634)
Q Consensus 541 ~~l~l~W~~~~~ 552 (634)
..|.+.|..--.
T Consensus 282 ~~l~~q~~~~~n 293 (489)
T PF11853_consen 282 YSLWFQYNRAFN 293 (489)
T ss_pred eEEEeeeecccc
Confidence 567777765544
No 243
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=2.2e+02 Score=26.50 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 338 EELRKKQELLDQKRNDFRRQLDKLE 362 (634)
Q Consensus 338 e~~kkKqelL~kq~eeqk~ll~kLe 362 (634)
+.++++.|.|+.++..+.++.++|.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~ 97 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444443
Done!