Query 048615
Match_columns 634
No_of_seqs 450 out of 2359
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-27 5.6E-32 245.2 20.2 144 75-248 44-195 (292)
2 3smz_A Protein raver-1, ribonu 100.0 2.9E-27 9.9E-32 242.5 21.6 135 82-248 31-173 (284)
3 4f02_A Polyadenylate-binding p 99.9 2.9E-25 1E-29 219.6 10.9 157 76-250 19-181 (213)
4 1b7f_A Protein (SXL-lethal pro 99.9 9.5E-25 3.2E-29 205.0 13.4 148 81-247 11-168 (168)
5 3md3_A Nuclear and cytoplasmic 99.9 1.3E-24 4.3E-29 203.1 13.0 151 81-249 8-166 (166)
6 1l3k_A Heterogeneous nuclear r 99.9 2.6E-24 8.8E-29 207.3 13.6 157 82-253 22-186 (196)
7 2qfj_A FBP-interacting repress 99.9 8.7E-25 3E-29 213.8 10.2 163 81-251 36-206 (216)
8 1fxl_A Paraneoplastic encephal 99.9 3E-24 1E-28 200.7 12.2 148 81-247 10-167 (167)
9 3pgw_A U1-A; protein-RNA compl 99.9 1.8E-23 6.1E-28 214.1 16.0 165 81-249 17-282 (282)
10 2yh0_A Splicing factor U2AF 65 99.9 9.3E-24 3.2E-28 203.7 11.1 167 81-252 12-196 (198)
11 2adc_A Polypyrimidine tract-bi 99.9 4E-23 1.4E-27 206.5 14.5 168 75-249 37-227 (229)
12 1fje_B Nucleolin RBD12, protei 99.9 2E-23 6.9E-28 198.1 11.0 150 81-250 21-174 (175)
13 2cjk_A Nuclear polyadenylated 99.9 8.9E-24 3E-28 198.5 7.6 147 81-249 11-165 (167)
14 3smz_A Protein raver-1, ribonu 99.9 2.6E-23 8.8E-28 213.1 11.6 187 37-251 70-265 (284)
15 3nmr_A Cugbp ELAV-like family 99.9 4.5E-23 1.5E-27 194.5 11.0 148 82-247 12-174 (175)
16 2g4b_A Splicing factor U2AF 65 99.9 6.2E-23 2.1E-27 193.6 11.6 142 81-248 12-172 (172)
17 1qm9_A Polypyrimidine tract-bi 99.9 7.5E-23 2.6E-27 198.5 11.1 163 81-249 11-196 (198)
18 3tyt_A Heterogeneous nuclear r 99.9 9.3E-23 3.2E-27 201.7 11.0 165 76-247 8-204 (205)
19 3sde_A Paraspeckle component 1 99.9 5.3E-22 1.8E-26 202.2 13.2 137 83-250 32-179 (261)
20 2ghp_A U4/U6 snRNA-associated 99.9 5.8E-22 2E-26 203.8 12.7 154 82-249 126-290 (292)
21 3pgw_A U1-A; protein-RNA compl 99.8 1.2E-19 4.2E-24 185.5 21.4 76 174-250 7-90 (282)
22 2i2y_A Fusion protein consists 99.8 1E-20 3.4E-25 177.1 10.1 135 113-251 11-149 (150)
23 2adc_A Polypyrimidine tract-bi 99.8 4.4E-19 1.5E-23 177.1 21.7 76 174-250 32-110 (229)
24 4f02_A Polyadenylate-binding p 99.8 1.5E-19 5.1E-24 178.6 16.3 73 175-248 14-93 (213)
25 1qm9_A Polypyrimidine tract-bi 99.8 4.9E-19 1.7E-23 171.5 19.1 74 176-250 3-79 (198)
26 2g4b_A Splicing factor U2AF 65 99.8 3.4E-19 1.2E-23 167.9 17.1 71 176-248 4-86 (172)
27 1b7f_A Protein (SXL-lethal pro 99.8 5.7E-19 2E-23 165.5 18.1 72 176-248 3-81 (168)
28 2yh0_A Splicing factor U2AF 65 99.8 1.5E-18 5.3E-23 167.1 20.5 71 176-248 4-86 (198)
29 2qfj_A FBP-interacting repress 99.8 1.2E-18 4.3E-23 170.0 20.1 72 176-248 28-106 (216)
30 3md3_A Nuclear and cytoplasmic 99.8 7.2E-19 2.5E-23 163.9 17.2 71 177-248 1-77 (166)
31 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-19 8.7E-24 168.5 13.2 134 113-252 11-152 (158)
32 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 5.7E-23 166.6 19.0 73 174-248 11-90 (196)
33 1fxl_A Paraneoplastic encephal 99.8 2E-18 6.7E-23 161.1 17.8 72 176-248 2-80 (167)
34 3tyt_A Heterogeneous nuclear r 99.8 1.9E-17 6.5E-22 163.6 18.8 74 176-250 4-80 (205)
35 2cjk_A Nuclear polyadenylated 99.8 1.2E-17 4.1E-22 156.5 16.5 70 176-247 3-78 (167)
36 3sde_A Paraspeckle component 1 99.7 1.4E-17 4.8E-22 169.6 16.4 72 175-247 21-93 (261)
37 3nmr_A Cugbp ELAV-like family 99.7 3.3E-17 1.1E-21 154.2 16.3 59 176-235 3-69 (175)
38 1fje_B Nucleolin RBD12, protei 99.7 3.7E-17 1.3E-21 154.8 16.5 73 174-248 11-89 (175)
39 1x4d_A Matrin 3; structural ge 99.7 3.2E-16 1.1E-20 138.7 10.0 77 175-252 14-94 (102)
40 4fxv_A ELAV-like protein 1; RN 99.6 3.3E-16 1.1E-20 137.1 9.4 73 176-249 19-98 (99)
41 2lea_A Serine/arginine-rich sp 99.6 1.8E-16 6.1E-21 146.5 7.8 119 115-253 4-130 (135)
42 1sjq_A Polypyrimidine tract-bi 99.6 2.5E-16 8.7E-21 140.1 8.3 78 174-252 14-94 (105)
43 2dnq_A RNA-binding protein 4B; 99.6 8.2E-16 2.8E-20 131.2 11.0 78 174-254 6-84 (90)
44 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.5E-16 1.2E-20 148.9 9.0 131 120-252 11-154 (165)
45 2cq1_A PTB-like protein L; RRM 99.6 1.5E-15 5E-20 134.0 12.0 78 174-252 13-93 (101)
46 2dnz_A Probable RNA-binding pr 99.6 1.6E-15 5.5E-20 130.2 11.4 79 175-254 4-89 (95)
47 1x4a_A Splicing factor, argini 99.6 1.9E-15 6.6E-20 133.4 11.7 84 173-257 19-106 (109)
48 2cq3_A RNA-binding protein 9; 99.6 3.5E-15 1.2E-19 130.3 12.9 79 174-253 13-96 (103)
49 1whw_A Hypothetical protein ri 99.6 2.9E-15 1E-19 129.7 12.4 79 174-253 6-91 (99)
50 2cph_A RNA binding motif prote 99.6 2E-15 6.7E-20 132.5 11.4 79 174-253 13-100 (107)
51 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.1E-20 131.9 10.3 78 174-252 13-91 (99)
52 2dgt_A RNA-binding protein 30; 99.6 2E-15 6.7E-20 129.4 10.9 78 174-254 8-86 (92)
53 1wex_A Hypothetical protein (r 99.6 1.9E-15 6.4E-20 134.0 11.1 78 174-252 13-93 (104)
54 2ytc_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.3E-20 127.7 10.0 75 173-248 9-85 (85)
55 1x5t_A Splicing factor 3B subu 99.6 1.4E-15 4.6E-20 130.9 9.8 79 175-254 4-90 (96)
56 1x5u_A Splicing factor 3B subu 99.6 3.2E-15 1.1E-19 130.9 12.1 80 174-254 13-99 (105)
57 1x4g_A Nucleolysin TIAR; struc 99.6 1.7E-15 5.8E-20 134.0 10.4 78 174-252 23-101 (109)
58 3r27_A HnRNP L, heterogeneous 99.6 1.5E-15 5.1E-20 133.9 9.8 77 174-251 19-98 (100)
59 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.1E-15 1.4E-19 129.9 12.4 79 174-253 13-96 (103)
60 2dgx_A KIAA0430 protein; RRM d 99.6 2.1E-15 7.1E-20 130.7 10.3 77 175-252 8-92 (96)
61 1why_A Hypothetical protein ri 99.6 2.1E-15 7.2E-20 130.5 10.1 77 174-251 15-94 (97)
62 2d9p_A Polyadenylate-binding p 99.6 2.8E-15 9.5E-20 130.9 11.0 79 174-253 13-96 (103)
63 2dgs_A DAZ-associated protein 99.6 5.5E-15 1.9E-19 128.1 12.0 77 174-252 8-91 (99)
64 1x4c_A Splicing factor, argini 99.6 1E-14 3.6E-19 128.9 13.7 78 173-252 12-95 (108)
65 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 6.7E-20 137.3 8.8 78 174-252 29-109 (119)
66 1x5s_A Cold-inducible RNA-bind 99.6 3.1E-15 1.1E-19 130.2 9.7 79 174-253 10-95 (102)
67 2dnm_A SRP46 splicing factor; 99.6 3.2E-15 1.1E-19 130.5 9.7 79 174-253 11-96 (103)
68 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 130.2 9.6 79 174-253 10-95 (102)
69 4f25_A Polyadenylate-binding p 99.6 2.2E-15 7.6E-20 135.0 8.7 75 176-251 5-84 (115)
70 2lxi_A RNA-binding protein 10; 99.6 1.6E-15 5.4E-20 130.6 7.3 77 177-254 2-87 (91)
71 2wbr_A GW182, gawky, LD47780P; 99.6 3.3E-15 1.1E-19 128.4 9.2 73 175-248 6-79 (89)
72 2dnp_A RNA-binding protein 14; 99.6 4.9E-15 1.7E-19 126.4 10.1 76 174-252 7-83 (90)
73 2fy1_A RNA-binding motif prote 99.6 7.5E-15 2.6E-19 132.0 11.8 78 176-254 7-90 (116)
74 2cpf_A RNA binding motif prote 99.6 5.7E-15 1.9E-19 127.7 10.5 78 175-253 4-91 (98)
75 1x4f_A Matrin 3; structural ge 99.6 2.2E-15 7.5E-20 135.5 8.1 78 174-252 23-104 (112)
76 2dgv_A HnRNP M, heterogeneous 99.6 3E-15 1E-19 127.8 8.5 79 174-253 6-89 (92)
77 1x4h_A RNA-binding protein 28; 99.6 9.5E-15 3.3E-19 128.9 12.0 78 174-252 13-103 (111)
78 2do4_A Squamous cell carcinoma 99.6 9.8E-15 3.4E-19 126.8 11.7 77 174-251 15-97 (100)
79 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.6E-15 1.6E-19 124.6 9.0 74 174-248 5-85 (85)
80 1wi8_A EIF-4B, eukaryotic tran 99.6 1.2E-14 4.1E-19 127.3 11.8 77 174-253 13-97 (104)
81 2cpz_A CUG triplet repeat RNA- 99.6 5.1E-15 1.7E-19 132.0 9.6 78 174-252 23-107 (115)
82 2la4_A Nuclear and cytoplasmic 99.6 2.6E-15 9E-20 130.6 7.3 75 174-249 25-100 (101)
83 3md1_A Nuclear and cytoplasmic 99.6 5.8E-15 2E-19 123.4 9.1 73 177-250 2-81 (83)
84 2cpd_A Apobec-1 stimulating pr 99.6 2E-14 6.7E-19 124.8 12.8 76 174-252 13-91 (99)
85 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-14 3.5E-19 127.7 11.0 77 175-252 14-99 (105)
86 2e5h_A Zinc finger CCHC-type a 99.6 1.4E-14 4.6E-19 124.2 11.5 74 174-248 14-94 (94)
87 1whx_A Hypothetical protein ri 99.6 4.2E-15 1.4E-19 132.6 8.6 75 176-251 10-85 (111)
88 2cq0_A Eukaryotic translation 99.6 1.8E-14 6.1E-19 125.8 12.4 78 174-252 13-97 (103)
89 1x5p_A Negative elongation fac 99.6 2.9E-14 9.8E-19 123.4 13.5 76 174-252 13-89 (97)
90 3s8s_A Histone-lysine N-methyl 99.6 7.6E-15 2.6E-19 131.1 9.9 75 175-250 5-86 (110)
91 1wf1_A RNA-binding protein RAL 99.6 4.3E-15 1.5E-19 131.6 8.2 76 175-253 26-103 (110)
92 2x1f_A MRNA 3'-END-processing 99.6 7.9E-15 2.7E-19 126.6 9.6 75 176-251 2-83 (96)
93 2dgo_A Cytotoxic granule-assoc 99.6 2.5E-14 8.5E-19 127.4 13.1 79 174-253 13-98 (115)
94 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-14 3.5E-19 134.1 10.8 80 174-254 40-126 (139)
95 3ex7_B RNA-binding protein 8A; 99.6 6.6E-15 2.3E-19 133.2 9.3 80 174-254 20-106 (126)
96 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.4E-15 2.2E-19 124.2 8.6 74 175-249 5-85 (87)
97 2kvi_A Nuclear polyadenylated 99.6 4.3E-15 1.5E-19 128.5 7.6 78 174-254 8-87 (96)
98 2cpe_A RNA-binding protein EWS 99.6 1E-14 3.5E-19 129.4 10.2 79 174-253 13-106 (113)
99 2cqd_A RNA-binding region cont 99.6 3.3E-14 1.1E-18 126.8 13.4 79 174-253 15-99 (116)
100 2dgu_A Heterogeneous nuclear r 99.6 2.2E-14 7.4E-19 125.5 11.9 76 175-253 10-86 (103)
101 2cpi_A CCR4-NOT transcription 99.6 8.5E-15 2.9E-19 130.3 9.3 75 176-251 15-102 (111)
102 2dng_A Eukaryotic translation 99.5 3.4E-14 1.2E-18 124.1 12.3 77 174-253 13-96 (103)
103 2fc9_A NCL protein; structure 99.5 3.5E-14 1.2E-18 123.5 12.3 76 174-253 13-94 (101)
104 2div_A TRNA selenocysteine ass 99.5 1E-14 3.5E-19 126.3 8.8 77 175-252 8-96 (99)
105 4a8x_A RNA-binding protein wit 99.5 1.7E-14 5.7E-19 121.7 9.7 75 176-251 4-86 (88)
106 2dgp_A Bruno-like 4, RNA bindi 99.5 1E-14 3.6E-19 127.8 8.8 79 174-253 11-99 (106)
107 2cqc_A Arginine/serine-rich sp 99.5 1.9E-14 6.4E-19 123.4 10.1 75 174-249 13-94 (95)
108 2do0_A HnRNP M, heterogeneous 99.5 4E-14 1.4E-18 125.7 12.5 78 174-252 13-96 (114)
109 1p27_B RNA-binding protein 8A; 99.5 1.2E-14 3.9E-19 127.5 8.7 77 174-251 21-104 (106)
110 2xnq_A Nuclear polyadenylated 99.5 1.9E-14 6.7E-19 125.1 10.0 74 174-250 20-95 (97)
111 2dhg_A TRNA selenocysteine ass 99.5 1.4E-14 4.8E-19 126.5 9.1 78 174-252 7-92 (104)
112 1x4b_A Heterogeneous nuclear r 99.5 2.6E-14 8.9E-19 127.6 10.9 76 176-253 27-109 (116)
113 1oo0_B CG8781-PA, drosophila Y 99.5 1.7E-14 5.9E-19 127.4 9.5 77 174-251 24-107 (110)
114 2ywk_A Putative RNA-binding pr 99.5 1.2E-14 4E-19 124.8 8.0 74 174-248 14-93 (95)
115 2hvz_A Splicing factor, argini 99.5 9E-15 3.1E-19 127.2 7.1 75 177-252 1-77 (101)
116 1nu4_A U1A RNA binding domain; 99.5 1.6E-14 5.6E-19 124.4 8.7 78 173-251 5-90 (97)
117 2cqh_A IGF-II mRNA-binding pro 99.5 9.6E-15 3.3E-19 125.2 7.1 77 174-252 6-85 (93)
118 2lkz_A RNA-binding protein 5; 99.5 8.5E-15 2.9E-19 127.6 6.7 74 174-248 7-93 (95)
119 2dh8_A DAZ-associated protein 99.5 1.7E-14 5.9E-19 126.3 8.6 78 174-253 14-98 (105)
120 3ucg_A Polyadenylate-binding p 99.5 2.4E-14 8.1E-19 121.2 9.1 73 176-250 6-85 (89)
121 2khc_A Testis-specific RNP-typ 99.5 1.9E-14 6.4E-19 128.7 8.7 74 174-248 38-118 (118)
122 2jvo_A Nucleolar protein 3; nu 99.5 2E-14 6.8E-19 127.7 8.8 76 174-252 29-105 (108)
123 2err_A Ataxin-2-binding protei 99.5 1.6E-14 5.4E-19 128.2 8.0 76 174-250 27-107 (109)
124 2la6_A RNA-binding protein FUS 99.5 1.8E-14 6.3E-19 125.0 8.3 75 173-248 10-99 (99)
125 2dis_A Unnamed protein product 99.5 3.1E-14 1.1E-18 125.3 9.7 78 174-252 6-94 (109)
126 3s7r_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 119.3 9.8 73 174-247 9-87 (87)
127 3ulh_A THO complex subunit 4; 99.5 3.5E-14 1.2E-18 124.6 9.2 74 174-248 27-106 (107)
128 2jrs_A RNA-binding protein 39; 99.5 2.6E-14 9E-19 126.8 8.2 76 174-250 24-106 (108)
129 3pgw_S U1-70K; protein-RNA com 99.5 1.4E-14 4.8E-19 158.7 7.6 76 175-251 101-183 (437)
130 1x4e_A RNA binding motif, sing 99.5 1.3E-14 4.5E-19 122.1 5.4 73 175-248 4-83 (85)
131 2a3j_A U1 small nuclear ribonu 99.5 4.7E-14 1.6E-18 129.4 9.5 76 174-250 27-110 (127)
132 2dgw_A Probable RNA-binding pr 99.5 9.5E-14 3.2E-18 118.5 10.6 74 174-250 8-87 (91)
133 1p1t_A Cleavage stimulation fa 99.5 1.1E-14 3.9E-19 126.9 5.0 75 176-251 8-89 (104)
134 2jvr_A Nucleolar protein 3; RN 99.5 3.2E-14 1.1E-18 127.6 8.0 74 175-249 27-104 (111)
135 2kxn_B Transformer-2 protein h 99.5 3.4E-14 1.2E-18 130.3 8.1 77 174-251 44-127 (129)
136 2fc8_A NCL protein; structure 99.5 1E-13 3.5E-18 120.6 10.7 77 174-254 13-96 (102)
137 1wg1_A KIAA1579 protein, homol 99.5 5.8E-14 2E-18 119.4 8.9 75 175-251 4-79 (88)
138 2rs2_A Musashi-1, RNA-binding 99.5 1E-13 3.5E-18 123.1 10.8 76 175-251 24-105 (109)
139 2cqg_A TDP-43, TAR DNA-binding 99.5 2.5E-13 8.6E-18 118.4 13.1 76 174-252 13-95 (103)
140 3ns6_A Eukaryotic translation 99.5 1.6E-14 5.3E-19 126.3 5.1 73 176-249 6-92 (100)
141 2jwn_A Embryonic polyadenylate 99.5 6.3E-14 2.1E-18 126.4 9.1 75 176-252 36-117 (124)
142 3lqv_A PRE-mRNA branch site pr 99.5 7.2E-14 2.5E-18 124.3 9.3 75 174-249 6-84 (115)
143 2kt5_A RNA and export factor-b 99.5 1.2E-13 4.1E-18 124.8 10.8 77 174-251 33-115 (124)
144 1wez_A HnRNP H', FTP-3, hetero 99.5 1E-13 3.5E-18 121.9 10.0 76 174-252 13-94 (102)
145 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.5E-13 5.1E-18 129.1 11.6 77 175-252 38-121 (156)
146 2nlw_A Eukaryotic translation 99.5 1E-13 3.5E-18 122.0 9.8 73 176-249 15-99 (105)
147 1wg5_A Heterogeneous nuclear r 99.5 2.2E-13 7.5E-18 119.7 11.9 76 174-251 13-95 (104)
148 2cq2_A Hypothetical protein LO 99.5 8.2E-14 2.8E-18 125.6 9.3 75 174-249 23-105 (114)
149 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.5E-13 5E-18 125.9 11.2 74 173-247 60-140 (140)
150 1wf0_A TDP-43, TAR DNA-binding 99.5 7.3E-14 2.5E-18 118.6 8.5 75 176-252 5-80 (88)
151 2cqp_A RNA-binding protein 12; 99.5 4E-14 1.4E-18 122.3 6.9 75 174-249 13-94 (98)
152 1s79_A Lupus LA protein; RRM, 99.5 6.2E-14 2.1E-18 123.8 8.3 71 176-248 11-87 (103)
153 3p5t_L Cleavage and polyadenyl 99.5 1.7E-14 5.7E-19 123.3 4.4 74 177-251 2-84 (90)
154 2lcw_A RNA-binding protein FUS 99.2 3.5E-15 1.2E-19 133.4 0.0 79 175-254 6-99 (116)
155 2cpx_A Hypothetical protein FL 99.5 1.1E-13 3.6E-18 123.1 9.1 78 175-253 24-108 (115)
156 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.3E-14 1.8E-18 122.6 6.8 74 174-250 17-98 (100)
157 2e5g_A U6 snRNA-specific termi 99.5 2.5E-13 8.5E-18 116.8 10.8 75 175-251 7-83 (94)
158 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 4E-18 119.6 8.8 76 174-251 17-95 (97)
159 3beg_B Splicing factor, argini 99.5 7.9E-14 2.7E-18 125.0 7.9 76 174-251 14-95 (115)
160 2cq4_A RNA binding motif prote 99.5 4.1E-14 1.4E-18 125.9 5.3 73 176-250 25-104 (114)
161 1uaw_A Mouse-musashi-1; RNP-ty 99.4 6.2E-14 2.1E-18 115.4 5.8 70 177-247 1-76 (77)
162 1x5o_A RNA binding motif, sing 99.4 1.8E-13 6.2E-18 121.5 9.2 75 174-249 23-111 (114)
163 2e44_A Insulin-like growth fac 99.4 1.7E-13 5.8E-18 117.9 8.7 75 175-250 14-92 (96)
164 2m2b_A RNA-binding protein 10; 99.4 9E-14 3.1E-18 127.2 7.2 77 174-252 21-110 (131)
165 2mss_A Protein (musashi1); RNA 99.4 7.1E-14 2.4E-18 114.8 5.9 68 178-247 1-75 (75)
166 2ki2_A SS-DNA binding protein 99.4 2.9E-14 1E-18 121.2 3.6 73 177-251 2-81 (90)
167 3n9u_C Cleavage and polyadenyl 99.4 1.8E-13 6.1E-18 129.7 9.0 73 176-249 55-136 (156)
168 2krb_A Eukaryotic translation 99.4 1.2E-13 4.2E-18 115.5 6.6 68 177-245 2-81 (81)
169 2hgn_A Heterogeneous nuclear r 99.4 5E-14 1.7E-18 131.3 4.5 117 116-252 2-125 (139)
170 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.6E-18 114.4 8.0 69 176-246 6-86 (87)
171 2e5i_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 122.9 9.7 74 177-251 26-103 (124)
172 2bz2_A Negative elongation fac 99.4 2.3E-13 8E-18 123.4 8.2 75 174-251 37-112 (121)
173 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-13 4.5E-18 139.6 7.1 78 174-252 132-231 (240)
174 2ek1_A RNA-binding protein 12; 99.4 8E-14 2.7E-18 119.6 4.7 73 175-248 14-93 (95)
175 3d2w_A TAR DNA-binding protein 99.4 4.5E-13 1.5E-17 114.8 9.2 75 174-250 9-84 (89)
176 2cpy_A RNA-binding protein 12; 99.4 4.6E-13 1.6E-17 119.6 9.4 74 175-250 14-94 (114)
177 1sjr_A Polypyrimidine tract-bi 99.4 4.3E-13 1.5E-17 128.2 9.3 75 176-251 46-125 (164)
178 1fjc_A Nucleolin RBD2, protein 99.4 2.5E-13 8.6E-18 116.8 6.8 76 175-252 15-93 (96)
179 2db1_A Heterogeneous nuclear r 99.4 4E-13 1.4E-17 121.0 8.2 74 174-249 15-97 (118)
180 1fj7_A Nucleolin RBD1, protein 99.4 1E-13 3.4E-18 120.6 3.6 75 175-252 16-97 (101)
181 3zzy_A Polypyrimidine tract-bi 99.4 7.7E-13 2.6E-17 121.9 9.6 76 176-252 28-108 (130)
182 2diu_A KIAA0430 protein; struc 99.4 5E-13 1.7E-17 116.1 7.4 71 176-251 9-85 (96)
183 4f25_A Polyadenylate-binding p 99.4 1.4E-13 4.8E-18 123.2 3.8 100 81-193 13-113 (115)
184 2hgl_A HNRPF protein, heteroge 99.4 5.9E-13 2E-17 123.6 8.0 73 174-248 42-123 (136)
185 1wel_A RNA-binding protein 12; 99.4 4.2E-13 1.4E-17 121.5 6.6 74 174-249 23-103 (124)
186 1iqt_A AUF1, heterogeneous nuc 99.4 2.6E-13 8.7E-18 111.3 4.0 69 178-247 1-75 (75)
187 3q2s_C Cleavage and polyadenyl 99.4 9E-13 3.1E-17 132.4 8.4 73 176-249 68-149 (229)
188 2f3j_A RNA and export factor b 99.3 1.6E-12 5.5E-17 125.6 9.1 76 173-249 85-166 (177)
189 2lmi_A GRSF-1, G-rich sequence 99.3 6E-13 2E-17 117.5 5.3 73 175-249 10-91 (107)
190 2voo_A Lupus LA protein; RNA-b 99.3 3.4E-12 1.2E-16 124.9 11.3 116 124-249 63-186 (193)
191 3egn_A RNA-binding protein 40; 99.3 6.3E-13 2.1E-17 123.0 5.5 77 174-251 43-131 (143)
192 2dnn_A RNA-binding protein 12; 99.3 1.5E-12 5.2E-17 116.2 7.8 71 176-249 16-92 (109)
193 2xs2_A Deleted in azoospermia- 99.3 1.1E-12 3.6E-17 114.3 5.7 72 176-250 9-86 (102)
194 2hgm_A HNRPF protein, heteroge 99.3 5E-12 1.7E-16 115.8 7.9 73 175-249 41-120 (126)
195 2dnl_A Cytoplasmic polyadenyla 99.3 6.7E-12 2.3E-16 112.0 7.6 71 175-248 7-86 (114)
196 2dha_A FLJ20171 protein; RRM d 99.3 4.6E-12 1.6E-16 115.6 6.4 72 175-248 22-103 (123)
197 2dit_A HIV TAT specific factor 99.2 5.2E-11 1.8E-15 105.9 11.6 77 174-251 13-103 (112)
198 2pe8_A Splicing factor 45; RRM 99.2 2.2E-11 7.6E-16 107.9 8.9 75 175-249 7-93 (105)
199 2cq3_A RNA-binding protein 9; 99.2 1.3E-10 4.6E-15 101.0 12.4 86 459-555 10-97 (103)
200 2ytc_A PRE-mRNA-splicing facto 99.2 5.6E-11 1.9E-15 99.5 9.2 75 460-549 8-85 (85)
201 4fxv_A ELAV-like protein 1; RN 99.2 4.9E-11 1.7E-15 104.1 9.1 80 463-551 18-99 (99)
202 2cq1_A PTB-like protein L; RRM 99.2 1.6E-10 5.4E-15 101.7 11.7 80 461-555 12-95 (101)
203 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.5E-10 5.2E-15 101.8 11.5 63 188-251 28-91 (100)
204 2cqi_A Nucleolysin TIAR; RNA r 99.2 2.3E-10 8E-15 99.5 11.9 87 457-554 8-96 (103)
205 2lxi_A RNA-binding protein 10; 99.2 1.6E-11 5.4E-16 105.5 4.2 73 81-153 9-84 (91)
206 1sjq_A Polypyrimidine tract-bi 99.1 7.9E-11 2.7E-15 104.6 8.7 80 460-554 12-95 (105)
207 2j8a_A Histone-lysine N-methyl 99.1 4.8E-11 1.6E-15 109.4 7.3 71 177-248 3-94 (136)
208 2d9p_A Polyadenylate-binding p 99.1 2.2E-10 7.6E-15 99.6 11.3 85 459-554 10-96 (103)
209 2cph_A RNA binding motif prote 99.1 3.3E-10 1.1E-14 99.0 12.3 86 460-554 11-100 (107)
210 2cpj_A Non-POU domain-containi 99.1 2.5E-10 8.5E-15 98.7 11.3 79 461-554 12-92 (99)
211 1why_A Hypothetical protein ri 99.1 3.4E-10 1.2E-14 97.5 12.0 77 462-553 15-95 (97)
212 1wex_A Hypothetical protein (r 99.1 4.6E-10 1.6E-14 99.2 12.9 76 464-554 15-94 (104)
213 2dgo_A Cytotoxic granule-assoc 99.1 4.1E-10 1.4E-14 99.9 12.7 87 460-555 11-99 (115)
214 1x4g_A Nucleolysin TIAR; struc 99.1 1.6E-10 5.6E-15 101.7 9.9 80 460-554 21-102 (109)
215 1x5u_A Splicing factor 3B subu 99.1 5.2E-10 1.8E-14 97.5 12.7 87 459-554 10-98 (105)
216 2lkz_A RNA-binding protein 5; 99.1 1.7E-11 5.7E-16 106.7 3.0 78 73-151 10-94 (95)
217 2dgs_A DAZ-associated protein 99.1 5.4E-10 1.8E-14 96.5 12.4 86 461-555 7-93 (99)
218 2dnq_A RNA-binding protein 4B; 99.1 3.4E-10 1.2E-14 96.1 10.8 77 461-554 5-83 (90)
219 3s8s_A Histone-lysine N-methyl 99.1 3.1E-11 1.1E-15 107.6 4.3 78 74-152 8-86 (110)
220 3v4m_A Splicing factor U2AF 65 99.1 1.4E-10 4.7E-15 102.7 8.4 74 176-249 5-96 (105)
221 4a8x_A RNA-binding protein wit 99.1 2.5E-10 8.4E-15 96.0 9.5 83 463-553 3-87 (88)
222 1whx_A Hypothetical protein ri 99.1 1.7E-10 5.8E-15 102.6 8.6 78 460-552 6-85 (111)
223 2cqg_A TDP-43, TAR DNA-binding 99.1 4.2E-10 1.4E-14 97.8 10.9 87 459-554 10-96 (103)
224 2la4_A Nuclear and cytoplasmic 99.1 1.2E-10 4.1E-15 101.0 7.1 74 462-550 25-100 (101)
225 2dnz_A Probable RNA-binding pr 99.1 6.2E-10 2.1E-14 95.1 11.1 84 463-555 4-89 (95)
226 3md1_A Nuclear and cytoplasmic 99.1 3.2E-10 1.1E-14 94.4 8.9 80 464-552 1-82 (83)
227 2fy1_A RNA-binding motif prote 99.1 9.1E-10 3.1E-14 98.6 12.5 84 461-554 4-89 (116)
228 2do0_A HnRNP M, heterogeneous 99.1 1E-09 3.4E-14 97.1 12.5 87 459-555 10-98 (114)
229 2cqb_A Peptidyl-prolyl CIS-tra 99.1 3.9E-10 1.3E-14 97.7 9.6 86 460-554 8-95 (102)
230 2e5h_A Zinc finger CCHC-type a 99.1 5.8E-10 2E-14 95.1 10.5 81 460-549 12-94 (94)
231 1x5s_A Cold-inducible RNA-bind 99.1 7.3E-10 2.5E-14 96.0 11.3 86 460-554 8-95 (102)
232 3bs9_A Nucleolysin TIA-1 isofo 99.1 3.3E-10 1.1E-14 95.1 8.7 80 463-551 5-86 (87)
233 1x4h_A RNA-binding protein 28; 99.1 8.5E-10 2.9E-14 97.0 11.4 86 461-555 12-105 (111)
234 2cq0_A Eukaryotic translation 99.1 6.5E-10 2.2E-14 96.7 10.5 85 461-554 12-98 (103)
235 2dgv_A HnRNP M, heterogeneous 99.1 4.7E-10 1.6E-14 95.3 9.3 83 461-554 5-89 (92)
236 3tht_A Alkylated DNA repair pr 99.1 2.6E-10 9E-15 121.1 9.4 74 174-248 16-97 (345)
237 2dnp_A RNA-binding protein 14; 99.1 6.2E-10 2.1E-14 94.5 9.9 77 461-554 6-84 (90)
238 2dgt_A RNA-binding protein 30; 99.1 7.2E-10 2.5E-14 94.5 10.2 77 461-554 7-85 (92)
239 1whw_A Hypothetical protein ri 99.1 1.2E-09 4.1E-14 94.1 11.7 84 462-554 6-91 (99)
240 3mdf_A Peptidyl-prolyl CIS-tra 99.0 5.7E-10 1.9E-14 93.2 9.2 80 461-549 4-85 (85)
241 3p5t_L Cleavage and polyadenyl 99.0 2.7E-11 9.4E-16 103.2 1.0 73 81-153 9-84 (90)
242 2dnh_A Bruno-like 5, RNA bindi 99.0 8.5E-10 2.9E-14 96.1 10.5 83 462-554 13-100 (105)
243 1x4c_A Splicing factor, argini 99.0 1.4E-09 4.6E-14 95.9 11.9 79 461-555 12-97 (108)
244 2dgu_A Heterogeneous nuclear r 99.0 1.3E-09 4.5E-14 94.9 11.6 78 461-555 8-87 (103)
245 2dnm_A SRP46 splicing factor; 99.0 1.1E-09 3.8E-14 95.2 11.0 86 461-555 10-97 (103)
246 2hvz_A Splicing factor, argini 99.0 6.8E-10 2.3E-14 96.2 9.6 76 465-554 1-78 (101)
247 1x4a_A Splicing factor, argini 99.0 1.8E-09 6.3E-14 94.9 12.4 83 460-554 18-102 (109)
248 1s79_A Lupus LA protein; RRM, 99.0 7E-10 2.4E-14 97.7 9.7 83 458-550 5-88 (103)
249 3ue2_A Poly(U)-binding-splicin 99.0 3.3E-10 1.1E-14 102.5 7.5 74 176-249 20-108 (118)
250 1x5t_A Splicing factor 3B subu 99.0 1.9E-10 6.5E-15 98.5 5.7 72 82-153 14-87 (96)
251 2x1f_A MRNA 3'-END-processing 99.0 1.6E-10 5.5E-15 99.4 5.1 73 81-153 10-83 (96)
252 2cpf_A RNA binding motif prote 99.0 6.6E-10 2.3E-14 95.6 9.0 86 463-554 4-91 (98)
253 2wbr_A GW182, gawky, LD47780P; 99.0 1.3E-10 4.5E-15 99.8 4.3 68 76-150 11-79 (89)
254 2err_A Ataxin-2-binding protei 99.0 6.3E-10 2.2E-14 98.4 8.7 81 460-551 25-107 (109)
255 2cpd_A Apobec-1 stimulating pr 99.0 1.9E-09 6.4E-14 93.2 11.5 78 459-553 10-91 (99)
256 2dh8_A DAZ-associated protein 99.0 6E-10 2.1E-14 97.2 8.4 88 458-554 10-98 (105)
257 2cpz_A CUG triplet repeat RNA- 99.0 2.2E-10 7.6E-15 101.7 5.6 72 83-154 35-107 (115)
258 2do4_A Squamous cell carcinoma 99.0 8.8E-10 3E-14 95.3 9.3 85 459-553 12-98 (100)
259 3ns6_A Eukaryotic translation 99.0 4.7E-11 1.6E-15 104.1 1.1 69 84-152 23-93 (100)
260 2jvo_A Nucleolar protein 3; nu 99.0 8.3E-10 2.8E-14 97.7 9.1 78 459-553 26-105 (108)
261 2ywk_A Putative RNA-binding pr 99.0 7.8E-10 2.7E-14 94.5 8.7 81 460-550 12-94 (95)
262 2cqc_A Arginine/serine-rich sp 99.0 1E-09 3.5E-14 93.6 9.4 81 461-550 12-94 (95)
263 2e44_A Insulin-like growth fac 99.0 1.3E-09 4.4E-14 93.4 10.0 79 461-552 12-93 (96)
264 3u1l_A PRE-mRNA-splicing facto 99.0 4.5E-10 1.5E-14 113.6 7.9 81 460-554 130-232 (240)
265 2cpi_A CCR4-NOT transcription 99.0 4.9E-10 1.7E-14 99.3 7.2 80 73-153 16-102 (111)
266 2ad9_A Polypyrimidine tract-bi 99.0 1.2E-09 4E-14 99.2 9.7 76 464-554 31-110 (119)
267 2dgx_A KIAA0430 protein; RRM d 99.0 1.2E-09 4E-14 94.2 9.2 78 464-553 9-92 (96)
268 1p27_B RNA-binding protein 8A; 99.0 1.1E-09 3.7E-14 95.6 8.9 84 461-553 20-105 (106)
269 1x5p_A Negative elongation fac 99.0 2.8E-09 9.6E-14 91.8 11.4 76 462-554 13-90 (97)
270 3ucg_A Polyadenylate-binding p 99.0 6.2E-10 2.1E-14 93.8 6.9 83 461-552 3-86 (89)
271 2dgp_A Bruno-like 4, RNA bindi 99.0 2.3E-09 7.9E-14 93.5 10.8 86 460-554 9-99 (106)
272 1p1t_A Cleavage stimulation fa 99.0 3.6E-10 1.2E-14 98.2 5.6 85 460-553 4-90 (104)
273 2xnq_A Nuclear polyadenylated 99.0 1.7E-09 5.8E-14 93.7 9.8 75 460-551 18-95 (97)
274 1jmt_A Splicing factor U2AF 35 99.0 8.6E-11 2.9E-15 103.8 1.6 66 181-247 20-103 (104)
275 1oo0_B CG8781-PA, drosophila Y 99.0 1.3E-09 4.3E-14 95.9 9.1 84 461-553 23-108 (110)
276 2kvi_A Nuclear polyadenylated 99.0 1.1E-09 3.9E-14 94.2 8.5 77 461-554 7-86 (96)
277 2cpe_A RNA-binding protein EWS 99.0 2.1E-09 7.2E-14 95.0 10.3 85 461-554 12-106 (113)
278 2div_A TRNA selenocysteine ass 99.0 1.4E-09 4.9E-14 93.7 8.9 84 462-554 7-97 (99)
279 2jrs_A RNA-binding protein 39; 99.0 1.5E-09 5.1E-14 96.0 9.2 85 459-552 21-107 (108)
280 2cqd_A RNA-binding region cont 99.0 7.2E-09 2.5E-13 92.0 13.2 85 459-553 12-98 (116)
281 3s7r_A Heterogeneous nuclear r 99.0 1.7E-09 5.9E-14 90.9 8.6 80 460-548 7-87 (87)
282 1wf0_A TDP-43, TAR DNA-binding 99.0 9.1E-10 3.1E-14 93.1 6.8 79 462-554 3-81 (88)
283 2cqh_A IGF-II mRNA-binding pro 99.0 1.1E-09 3.8E-14 93.4 7.4 78 461-554 5-86 (93)
284 1wf1_A RNA-binding protein RAL 99.0 2.2E-09 7.5E-14 94.6 9.5 74 463-553 26-102 (110)
285 2la6_A RNA-binding protein FUS 99.0 2.5E-10 8.6E-15 98.7 3.4 75 75-150 16-99 (99)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.0 2.2E-09 7.4E-14 98.0 9.8 81 459-548 58-140 (140)
287 2jwn_A Embryonic polyadenylate 99.0 1.3E-09 4.4E-14 97.9 8.1 86 460-554 32-118 (124)
288 3ex7_B RNA-binding protein 8A; 98.9 1.9E-09 6.5E-14 97.1 9.2 84 462-554 20-105 (126)
289 2jvr_A Nucleolar protein 3; RN 98.9 1.3E-09 4.3E-14 97.6 7.7 80 461-553 25-107 (111)
290 2dng_A Eukaryotic translation 98.9 4.7E-09 1.6E-13 91.3 11.1 86 459-554 10-96 (103)
291 2i2y_A Fusion protein consists 98.9 2.3E-09 7.8E-14 99.7 9.7 77 461-551 70-148 (150)
292 3n9u_C Cleavage and polyadenyl 98.9 2.7E-10 9.1E-15 107.8 3.3 78 75-153 58-138 (156)
293 2j76_E EIF-4B, EIF4B, eukaryot 98.9 3.9E-10 1.3E-14 98.0 4.1 70 81-152 27-98 (100)
294 1nu4_A U1A RNA binding domain; 98.9 2.3E-09 7.9E-14 91.9 8.9 80 462-553 6-91 (97)
295 2fc9_A NCL protein; structure 98.9 3.4E-09 1.2E-13 91.7 10.0 82 460-554 11-94 (101)
296 2cqp_A RNA-binding protein 12; 98.9 1.1E-09 3.9E-14 94.1 6.8 85 459-552 10-96 (98)
297 2rs2_A Musashi-1, RNA-binding 98.9 3.7E-09 1.3E-13 93.5 10.2 87 458-553 19-106 (109)
298 1wi8_A EIF-4B, eukaryotic tran 98.9 6.3E-09 2.1E-13 90.6 11.5 85 461-554 12-97 (104)
299 2dis_A Unnamed protein product 98.9 2.9E-09 1E-13 93.3 9.4 83 463-554 7-95 (109)
300 1x4f_A Matrin 3; structural ge 98.9 2E-09 7E-14 96.5 8.1 75 464-553 25-104 (112)
301 1u6f_A Tcubp1, RNA-binding pro 98.9 3.2E-09 1.1E-13 97.3 9.6 85 461-554 39-125 (139)
302 2kxn_B Transformer-2 protein h 98.9 6.3E-10 2.1E-14 101.8 4.8 78 75-153 49-127 (129)
303 2kn4_A Immunoglobulin G-bindin 98.9 5.4E-09 1.8E-13 97.7 11.2 85 461-554 67-153 (158)
304 3ulh_A THO complex subunit 4; 98.9 3.4E-09 1.2E-13 92.6 9.2 78 462-549 27-106 (107)
305 1x4d_A Matrin 3; structural ge 98.9 2.8E-09 9.5E-14 94.0 8.5 74 464-552 15-93 (102)
306 2khc_A Testis-specific RNP-typ 98.9 2.5E-09 8.5E-14 95.2 8.1 81 460-549 36-118 (118)
307 2kt5_A RNA and export factor-b 98.9 7.1E-09 2.4E-13 93.3 11.1 84 461-554 32-117 (124)
308 2ek1_A RNA-binding protein 12; 98.9 3.4E-10 1.1E-14 96.8 2.2 76 75-151 18-94 (95)
309 2mss_A Protein (musashi1); RNA 98.9 4.7E-10 1.6E-14 91.8 2.9 68 81-149 7-75 (75)
310 3d2w_A TAR DNA-binding protein 98.9 2.8E-09 9.7E-14 91.0 7.8 78 460-553 7-86 (89)
311 1x4e_A RNA binding motif, sing 98.9 3.1E-10 1.1E-14 95.1 1.7 70 81-150 13-83 (85)
312 2lea_A Serine/arginine-rich sp 98.9 3.7E-09 1.2E-13 97.3 8.9 85 461-554 44-130 (135)
313 3lqv_A PRE-mRNA branch site pr 98.9 4.7E-09 1.6E-13 93.0 9.3 78 463-552 7-86 (115)
314 1h2v_Z 20 kDa nuclear CAP bind 98.9 5.4E-09 1.9E-13 97.8 10.2 86 460-554 35-122 (156)
315 2cpy_A RNA-binding protein 12; 98.9 3E-09 1E-13 94.6 8.0 84 459-552 10-95 (114)
316 3s6e_A RNA-binding protein 39; 98.9 1.4E-09 4.8E-14 97.8 5.9 73 176-248 7-91 (114)
317 2e5j_A Methenyltetrahydrofolat 98.9 6.4E-09 2.2E-13 89.5 9.7 79 461-553 16-96 (97)
318 2dhg_A TRNA selenocysteine ass 98.9 4.6E-09 1.6E-13 91.3 8.8 83 462-554 7-93 (104)
319 2cq2_A Hypothetical protein LO 98.9 5.4E-09 1.8E-13 94.1 9.2 77 464-554 25-109 (114)
320 2ki2_A SS-DNA binding protein 98.9 2.8E-10 9.5E-15 96.5 0.7 72 81-153 9-81 (90)
321 1uaw_A Mouse-musashi-1; RNP-ty 98.9 3.4E-09 1.2E-13 86.8 7.2 75 465-548 1-76 (77)
322 1wg5_A Heterogeneous nuclear r 98.9 2E-08 6.7E-13 87.9 12.6 82 461-552 12-95 (104)
323 1x5o_A RNA binding motif, sing 98.9 6.3E-09 2.1E-13 92.0 9.2 82 460-551 21-112 (114)
324 1x4b_A Heterogeneous nuclear r 98.9 1.9E-09 6.6E-14 95.8 5.9 72 82-154 36-108 (116)
325 2cq4_A RNA binding motif prote 98.9 5.7E-10 2E-14 98.9 2.2 72 81-153 33-105 (114)
326 2e5g_A U6 snRNA-specific termi 98.9 6.4E-09 2.2E-13 89.0 8.5 77 463-553 7-84 (94)
327 1iqt_A AUF1, heterogeneous nuc 98.9 4.7E-09 1.6E-13 85.6 7.3 74 466-548 1-75 (75)
328 2m2b_A RNA-binding protein 10; 98.8 6.1E-09 2.1E-13 94.9 8.9 86 460-555 19-112 (131)
329 2dgw_A Probable RNA-binding pr 98.8 1.6E-09 5.4E-14 92.0 4.2 70 81-153 18-88 (91)
330 2fc8_A NCL protein; structure 98.8 3.1E-09 1.1E-13 92.0 6.0 70 81-153 23-93 (102)
331 3r27_A HnRNP L, heterogeneous 98.8 9.8E-09 3.3E-13 90.3 9.1 74 463-551 20-97 (100)
332 2dnr_A Synaptojanin-1; RRM dom 98.8 1E-08 3.4E-13 88.3 8.9 73 175-250 6-86 (91)
333 1rk8_A CG8781-PA, CG8781-PA pr 98.8 5.3E-09 1.8E-13 99.1 8.0 83 463-554 71-155 (165)
334 2krb_A Eukaryotic translation 98.8 8E-10 2.7E-14 92.1 1.9 60 86-147 20-81 (81)
335 2cpx_A Hypothetical protein FL 98.8 1.5E-08 5.3E-13 89.5 10.4 81 461-554 22-108 (115)
336 2nlw_A Eukaryotic translation 98.8 8.1E-09 2.8E-13 90.5 8.5 81 461-551 12-100 (105)
337 2xs2_A Deleted in azoospermia- 98.8 3.2E-09 1.1E-13 92.1 5.5 83 461-553 6-88 (102)
338 1fjc_A Nucleolin RBD2, protein 98.8 9.1E-09 3.1E-13 88.0 8.1 81 459-553 11-93 (96)
339 1wg1_A KIAA1579 protein, homol 98.8 6.2E-09 2.1E-13 88.1 6.9 74 463-552 4-79 (88)
340 2a3j_A U1 small nuclear ribonu 98.8 1.3E-08 4.6E-13 93.0 9.3 77 464-552 29-111 (127)
341 2bz2_A Negative elongation fac 98.8 1E-08 3.6E-13 92.7 8.5 76 462-554 37-114 (121)
342 1fj7_A Nucleolin RBD1, protein 98.8 7E-10 2.4E-14 96.1 0.5 69 83-153 27-96 (101)
343 2lcw_A RNA-binding protein FUS 98.3 5.9E-10 2E-14 99.3 0.0 73 81-153 15-96 (116)
344 1wel_A RNA-binding protein 12; 98.8 7.4E-10 2.5E-14 100.0 0.5 72 81-153 33-105 (124)
345 2pe8_A Splicing factor 45; RRM 98.8 4.6E-09 1.6E-13 92.9 5.0 67 85-151 25-93 (105)
346 2d9o_A DNAJ (HSP40) homolog, s 98.8 2.5E-08 8.7E-13 87.5 9.8 66 476-554 28-93 (100)
347 2db1_A Heterogeneous nuclear r 98.8 2.3E-09 8E-14 96.2 3.0 71 81-153 25-99 (118)
348 2dnn_A RNA-binding protein 12; 98.8 4E-09 1.4E-13 94.0 4.3 73 76-152 20-93 (109)
349 1wez_A HnRNP H', FTP-3, hetero 98.8 3.2E-08 1.1E-12 86.6 9.8 83 461-554 12-95 (102)
350 1sjr_A Polypyrimidine tract-bi 98.7 2.2E-08 7.4E-13 95.7 9.3 79 461-552 43-125 (164)
351 2hzc_A Splicing factor U2AF 65 98.7 2E-08 6.9E-13 84.0 7.7 72 461-547 3-86 (87)
352 2hgl_A HNRPF protein, heteroge 98.7 2.3E-09 8E-14 99.2 1.9 70 81-152 52-125 (136)
353 3beg_B Splicing factor, argini 98.7 2.6E-08 8.9E-13 88.8 8.6 76 462-553 14-96 (115)
354 2lmi_A GRSF-1, G-rich sequence 98.7 1.9E-09 6.5E-14 94.9 1.0 71 81-153 19-93 (107)
355 1owx_A Lupus LA protein, SS-B, 98.7 3.6E-08 1.2E-12 89.6 9.5 74 174-247 16-93 (121)
356 2f3j_A RNA and export factor b 98.7 3.5E-08 1.2E-12 95.1 9.9 80 463-552 87-168 (177)
357 3q2s_C Cleavage and polyadenyl 98.7 2.2E-08 7.5E-13 100.3 7.6 85 458-551 62-150 (229)
358 1jmt_A Splicing factor U2AF 35 98.7 6.2E-09 2.1E-13 91.8 2.9 61 88-149 41-103 (104)
359 3v4m_A Splicing factor U2AF 65 98.7 1.5E-08 5.1E-13 89.5 5.1 66 86-151 28-96 (105)
360 3pgw_S U1-70K; protein-RNA com 98.6 2E-08 6.9E-13 109.9 6.5 79 74-153 104-183 (437)
361 3egn_A RNA-binding protein 40; 98.6 2.9E-08 9.9E-13 91.5 6.4 82 461-554 42-133 (143)
362 2hgn_A Heterogeneous nuclear r 98.6 7.4E-09 2.5E-13 96.2 1.8 75 75-153 49-124 (139)
363 2e5i_A Heterogeneous nuclear r 98.6 1.1E-07 3.9E-12 86.6 9.4 76 462-552 23-103 (124)
364 2j8a_A Histone-lysine N-methyl 98.6 9.1E-09 3.1E-13 94.4 1.8 69 82-150 15-94 (136)
365 2voo_A Lupus LA protein; RNA-b 98.6 7.2E-08 2.5E-12 94.1 8.2 79 462-550 107-186 (193)
366 3zzy_A Polypyrimidine tract-bi 98.6 9.9E-08 3.4E-12 87.7 8.5 79 461-552 25-107 (130)
367 2dit_A HIV TAT specific factor 98.6 2.4E-08 8.2E-13 88.6 3.6 63 87-153 40-103 (112)
368 2hgm_A HNRPF protein, heteroge 98.6 1.6E-07 5.6E-12 85.7 9.0 77 462-549 40-119 (126)
369 3ue2_A Poly(U)-binding-splicin 98.5 2E-08 6.8E-13 90.8 2.1 65 86-150 38-107 (118)
370 1ufw_A Synaptojanin 2; RNP dom 98.5 8.5E-08 2.9E-12 83.0 5.2 72 174-248 13-93 (95)
371 2dha_A FLJ20171 protein; RRM d 98.5 1.7E-08 5.8E-13 91.9 0.1 70 81-152 31-105 (123)
372 3s6e_A RNA-binding protein 39; 98.5 4.6E-08 1.6E-12 87.9 2.9 63 85-151 29-92 (114)
373 2dnl_A Cytoplasmic polyadenyla 98.4 3.3E-07 1.1E-11 81.4 6.8 65 463-534 7-71 (114)
374 2diu_A KIAA0430 protein; struc 98.3 4.2E-06 1.4E-10 72.7 9.9 76 461-555 6-88 (96)
375 3dxb_A Thioredoxin N-terminall 98.2 9.6E-07 3.3E-11 87.1 5.6 59 190-248 142-211 (222)
376 2l9w_A U4/U6 snRNA-associated- 98.1 6E-06 2E-10 73.1 7.8 69 176-245 21-95 (117)
377 3tht_A Alkylated DNA repair pr 98.1 1.4E-06 4.9E-11 92.4 4.4 79 65-149 11-96 (345)
378 3dxb_A Thioredoxin N-terminall 97.9 2.4E-06 8.3E-11 84.2 1.5 64 87-150 143-211 (222)
379 1owx_A Lupus LA protein, SS-B, 97.8 3.8E-05 1.3E-09 69.6 8.1 68 464-546 18-91 (121)
380 1wwh_A Nucleoporin 35, nucleop 97.8 3E-05 1E-09 69.9 6.4 70 463-548 23-94 (119)
381 2dnr_A Synaptojanin-1; RRM dom 97.7 4.9E-05 1.7E-09 65.4 6.9 57 480-551 29-86 (91)
382 1ufw_A Synaptojanin 2; RNP dom 97.7 5.5E-05 1.9E-09 65.5 5.8 55 481-550 39-94 (95)
383 1wey_A Calcipressin 1; structu 97.4 0.00018 6E-09 63.3 5.4 72 177-248 6-82 (104)
384 2l9w_A U4/U6 snRNA-associated- 97.2 0.00096 3.3E-08 59.1 7.5 71 461-546 18-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.1 0.0033 1.1E-07 55.1 10.2 70 176-248 8-82 (104)
386 3p3d_A Nucleoporin 53; structu 96.9 0.00093 3.2E-08 61.1 5.4 90 459-551 2-99 (132)
387 1wwh_A Nucleoporin 35, nucleop 96.5 0.0083 2.8E-07 54.0 8.7 69 176-247 24-94 (119)
388 2dhx_A Poly (ADP-ribose) polym 95.6 0.067 2.3E-06 46.9 9.5 73 464-553 8-86 (104)
389 3p3d_A Nucleoporin 53; structu 95.3 0.012 4E-07 53.8 3.9 71 176-248 7-97 (132)
390 3pq1_A Poly(A) RNA polymerase; 95.2 0.008 2.7E-07 66.0 2.8 55 176-232 53-108 (464)
391 1uw4_A UPF3X; nonsense mediate 93.6 0.26 8.8E-06 42.2 8.2 58 177-235 2-67 (91)
392 1whv_A Poly(A)-specific ribonu 92.5 0.18 6E-06 43.8 5.5 53 177-233 17-69 (100)
393 3ctr_A Poly(A)-specific ribonu 89.4 0.33 1.1E-05 42.2 4.3 53 178-233 7-59 (101)
394 1wey_A Calcipressin 1; structu 88.9 1.4 4.6E-05 38.6 7.9 74 464-551 5-84 (104)
395 2l08_A Regulator of nonsense t 85.9 0.97 3.3E-05 39.1 5.1 59 176-235 9-75 (97)
396 1whv_A Poly(A)-specific ribonu 82.9 2.4 8.1E-05 36.8 6.2 52 464-533 16-67 (100)
397 3lcn_C MRNA transport factor G 82.1 1.2 4.2E-05 29.3 3.1 19 343-361 7-25 (29)
398 3pq1_A Poly(A) RNA polymerase; 81.3 0.77 2.6E-05 50.3 3.2 56 464-534 53-108 (464)
399 1uw4_A UPF3X; nonsense mediate 74.4 7.3 0.00025 33.1 6.7 69 465-540 2-72 (91)
400 3ctr_A Poly(A)-specific ribonu 71.0 5.3 0.00018 34.7 5.0 53 463-533 5-57 (101)
401 3d45_A Poly(A)-specific ribonu 57.0 13 0.00045 40.9 6.2 54 177-234 441-494 (507)
402 3ghg_A Fibrinogen alpha chain; 43.3 16 0.00055 40.1 3.9 49 324-372 113-161 (562)
403 2yy0_A C-MYC-binding protein; 42.1 20 0.00067 27.4 3.2 31 330-360 21-51 (53)
404 3brv_B NF-kappa-B essential mo 41.3 47 0.0016 26.7 5.3 38 325-362 30-67 (70)
405 3d45_A Poly(A)-specific ribonu 39.0 49 0.0017 36.4 7.1 54 462-533 438-491 (507)
406 3ghg_A Fibrinogen alpha chain; 37.1 80 0.0027 34.8 8.1 26 339-364 114-139 (562)
407 3he5_B Synzip2; heterodimeric 36.4 1E+02 0.0035 22.4 6.0 39 326-364 8-46 (52)
408 2g0c_A ATP-dependent RNA helic 33.6 17 0.00058 29.0 1.7 35 115-149 40-74 (76)
409 1use_A VAsp, vasodilator-stimu 32.9 68 0.0023 23.7 4.6 20 329-348 13-33 (45)
410 3nmd_A CGMP dependent protein 24.8 1.6E+02 0.0054 23.9 5.9 11 326-336 28-38 (72)
411 2l08_A Regulator of nonsense t 24.7 89 0.003 26.8 4.8 71 463-540 8-80 (97)
412 3mq9_A Bone marrow stromal ant 24.2 1E+02 0.0035 32.9 6.4 27 340-366 395-421 (471)
413 1gmj_A ATPase inhibitor; coile 22.3 1.8E+02 0.0063 24.2 6.0 8 355-362 57-64 (84)
414 1gmj_A ATPase inhibitor; coile 20.8 1.9E+02 0.0066 24.0 5.9 24 339-362 45-68 (84)
415 2l5g_B Putative uncharacterize 20.8 2E+02 0.007 20.8 5.2 32 333-364 7-38 (42)
416 3ra3_A P1C; coiled coil domain 20.4 1.7E+02 0.0058 18.8 4.1 24 332-355 4-27 (28)
417 1f5n_A Interferon-induced guan 20.1 1.5E+02 0.005 33.3 6.7 27 329-355 495-521 (592)
418 2xus_A Breast cancer metastasi 20.0 2.3E+02 0.0078 21.3 5.5 36 326-361 5-44 (49)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.6e-27 Score=245.25 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=123.6
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+.|+| +....+++.+..+|..+|.|..+..++++.+ ++|||||+|.+.++| +|+ .|||..|.|++|+|.++.
T Consensus 44 l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~--- 116 (292)
T 2ghp_A 44 VLVKN-LPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT--- 116 (292)
T ss_dssp EEEEE-ECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC---
T ss_pred EEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC---
Confidence 34444 4456678888888888888887777765533 489999999999999 999 699999999999998652
Q ss_pred CCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEecC-----CCeEEEEeCCHHHHH
Q 048615 154 MDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPLN-----SERAFVQFSKREEAE 227 (634)
Q Consensus 154 ~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~d-----kg~AFV~F~s~e~A~ 227 (634)
.++|||+|||++ +++++|+++|++|| .|..|+|+.+ ++||||+|.+.++|.
T Consensus 117 ----------------------~~~l~v~nlp~~-~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 117 ----------------------ECTLWMTNFPPS-YTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp ----------------------SCEEEEECCCTT-CCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred ----------------------CCEEEEECCCCC-CCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 479999999995 99999999999999 9999999874 479999999999999
Q ss_pred HHHHcCCC-ccCCeEEEEEeec
Q 048615 228 AALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 228 ~Ai~~lng-~l~gR~IkV~wak 248 (634)
+|+..++| .|+|+.|+|.|+.
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhCCCEeCCcEEEEEECC
Confidence 99999999 8999999999985
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.9e-27 Score=242.45 Aligned_cols=135 Identities=14% Similarity=0.196 Sum_probs=118.3
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcccc
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~ 160 (634)
....+++.+..+|..+| |..+.. +.++|||||+|.+.++| +|+..|||..+.|++|+|.++.
T Consensus 31 p~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------- 93 (284)
T 3smz_A 31 PGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------- 93 (284)
T ss_dssp CTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------
T ss_pred CCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------
Confidence 34557778888888888 666644 23489999999999999 9999999999999999998642
Q ss_pred ccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCC
Q 048615 161 QNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 161 ~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~ln 234 (634)
..++|||+|||++ +++++|+++|++||.|..|+++.++ +||||+|.+.++|.+|+..++
T Consensus 94 --------------~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 94 --------------TDALLCVANLPPS-LTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp --------------CSCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --------------CCCEEEEcCCCCc-CCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 1469999999995 9999999999999999999998764 599999999999999999999
Q ss_pred C-ccCCeEEEEEeec
Q 048615 235 A-VMGNRFIKLWWAN 248 (634)
Q Consensus 235 g-~l~gR~IkV~wak 248 (634)
| .++|+.|+|.|+.
T Consensus 159 ~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 159 GKPLGPRTLYVHWTD 173 (284)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEeCCcEEEEEECC
Confidence 9 8999999999974
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=2.9e-25 Score=219.56 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=135.3
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM 154 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~ 154 (634)
.|+| +....+++.+..+|.++|.|..+++++++.++.++|||||+|.+.++| +||..|||..+.||.|++.++.....
T Consensus 19 fVgn-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~ 97 (213)
T 4f02_A 19 YVGD-LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS 97 (213)
T ss_dssp EEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred EEeC-CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc
Confidence 3433 445667888999999999999888888888888899999999999999 99999999999999999998764321
Q ss_pred CCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC----CeEEEEeCCHHHHHHHH
Q 048615 155 DPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS----ERAFVQFSKREEAEAAL 230 (634)
Q Consensus 155 ~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai 230 (634)
.. ....++|||+|||++ +++++|+++|++||.|..|+|++++ +||||+|.+.++|.+|+
T Consensus 98 ~~----------------~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 98 LR----------------KSGVGNIFIKNLDKS-IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp HH----------------HHCTTEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred cc----------------ccccccceECCcccc-cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 00 011469999999995 9999999999999999999998764 69999999999999999
Q ss_pred HcCCC-ccCCeEEEEEeecCC
Q 048615 231 KSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 231 ~~lng-~l~gR~IkV~wak~~ 250 (634)
+.|+| .|+||.|+|.|+++.
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHTTCEETTEECEEEECCCH
T ss_pred HHhCCCEECCEEEEEEEcCCC
Confidence 99999 899999999999753
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=9.5e-25 Score=205.00 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=130.9
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|..+|.|..+..++++.++.++|||||+|.+.++| +|+..|||..+.|++|+|.++.+....
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~---- 86 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES---- 86 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST----
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc----
Confidence 334567788899999999988888888877778899999999999999 999999999999999999988754311
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~l 233 (634)
...++|||+|||++ +++++|+++|++||.|..|.+++++ +||||+|.+.++|.+|+..+
T Consensus 87 --------------~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 87 --------------IKDTNLYVTNLPRT-ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTCEEEEESCCTT-CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------CCCCCEEEeCCCCC-CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 22579999999995 9999999999999999999999875 69999999999999999999
Q ss_pred CC-ccCC--eEEEEEee
Q 048615 234 DA-VMGN--RFIKLWWA 247 (634)
Q Consensus 234 ng-~l~g--R~IkV~wa 247 (634)
+| .++| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 99 7877 99999996
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-24 Score=203.09 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=129.4
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|.++|.|..+..+.++. +.++|||||+|.+.++| +|+..|||..+.|++|+|.++.+....
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~---- 82 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS---- 82 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC----
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC----
Confidence 344567778888888888888777776664 45789999999999999 999999999999999999988654321
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~l 233 (634)
.....++|||+|||++ +++++|+++|++||.|..+.++.++ +||||+|.+.++|.+|+..|
T Consensus 83 ------------~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 83 ------------SSDDTFNLFVGDLNVN-VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp ------------CCTTCEEEEEESCCTT-CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred ------------CCCCCceEEECCCCCC-CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 1123579999999995 9999999999999999999998773 59999999999999999999
Q ss_pred CC-ccCCeEEEEEeecC
Q 048615 234 DA-VMGNRFIKLWWANR 249 (634)
Q Consensus 234 ng-~l~gR~IkV~wak~ 249 (634)
+| .|+||.|+|.|+++
T Consensus 150 ~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 150 QGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TTCEETTEECEEEESCC
T ss_pred CCCccCCcEEEEEecCC
Confidence 99 89999999999963
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.91 E-value=2.6e-24 Score=207.34 Aligned_cols=157 Identities=12% Similarity=0.189 Sum_probs=126.4
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcccc
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKA 160 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~ 160 (634)
....+++.+..+|.++|.|..+..++++.++.++|||||+|.+.++| +||.. +|..+.|+.|.|.++........
T Consensus 22 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~--- 97 (196)
T 1l3k_A 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQR--- 97 (196)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---------
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccc---
Confidence 34557788888999999888888888877778899999999999999 89865 99999999999998875442111
Q ss_pred ccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCC
Q 048615 161 QNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 161 ~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~ln 234 (634)
.......++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+|+.. +
T Consensus 98 ---------~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 98 ---------PGAHLTVKKIFVGGIKED-TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp --------------CCSEEEEECCTTT-CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred ---------cccCCCcceEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 011123589999999995 9999999999999999999999873 5999999999999999998 5
Q ss_pred C-ccCCeEEEEEeecCCCCC
Q 048615 235 A-VMGNRFIKLWWANRDSIP 253 (634)
Q Consensus 235 g-~l~gR~IkV~wak~~~~~ 253 (634)
+ .|+|+.|+|.|+.+....
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 6 899999999999765543
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.91 E-value=8.7e-25 Score=213.80 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=132.2
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|.++|.|..+..++++.++.++|||||+|.+.++| +|+..|||..|.|++|+|.++..........
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 115 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPII 115 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhh
Confidence 334567788889999999988888888877778899999999999999 9999999999999999998876543211100
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~l 233 (634)
.... ......++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|
T Consensus 116 ~~~~-------~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 116 DQLA-------EEARAFNRIYVASVHQD-LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp HHHH-------HHHTTSCEEEEECCCTT-CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhh-------cccCCCcEEEEeCCCCc-CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 0000 00123579999999995 999999999999999999999987 469999999999999999999
Q ss_pred CC-ccCCeEEEEEeecCCC
Q 048615 234 DA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 234 ng-~l~gR~IkV~wak~~~ 251 (634)
+| .|+||.|+|.|+++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 99 8999999999997543
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=3e-24 Score=200.70 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=129.1
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|.++|.|..+..++++.++.++|||||+|.+.++| +|+..|||..+.|++|+|.++.+...
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----- 84 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----- 84 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----
Confidence 334567788888999999888888888887778899999999999999 99999999999999999998864331
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~l 233 (634)
....++|||+|||+. +++++|+++|++||.|..|+++.++ +||||+|.+.++|.+|++.|
T Consensus 85 -------------~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 85 -------------SIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp -------------GGTTCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -------------cCCCCcEEECCCCCc-CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 112479999999995 9999999999999999999998864 69999999999999999999
Q ss_pred CC-ccCCeE--EEEEee
Q 048615 234 DA-VMGNRF--IKLWWA 247 (634)
Q Consensus 234 ng-~l~gR~--IkV~wa 247 (634)
+| .++||. |+|.||
T Consensus 151 ~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 151 NGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCccCCCccceEEEeC
Confidence 99 799865 999986
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=1.8e-23 Score=214.07 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=127.5
Q ss_pred CCccccccccc----cceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCC
Q 048615 81 GTAAVSQNTSM----SVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMD 155 (634)
Q Consensus 81 ~~~~~s~~~~~----svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~ 155 (634)
+....+++.++ .+|.++|.|..+++++ ++.++|||||+|.+.++| +||..|||..|.||+|+|.++......
T Consensus 17 lp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 93 (282)
T 3pgw_A 17 LNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 93 (282)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcch
Confidence 33445566643 7888888887776665 345699999999999999 999999999999999999988654410
Q ss_pred Ccc--ccc-------------------------------------cc---------------------------------
Q 048615 156 PST--KAQ-------------------------------------ND--------------------------------- 163 (634)
Q Consensus 156 ~~~--~~~-------------------------------------~d--------------------------------- 163 (634)
... ... +.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~ 173 (282)
T 3pgw_A 94 IAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP 173 (282)
T ss_pred hhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCC
Confidence 000 000 00
Q ss_pred --ccc---------------c----cCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeC
Q 048615 164 --HMR---------------N----IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFS 221 (634)
Q Consensus 164 --~~~---------------~----~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~ 221 (634)
... . .........++|||+|||++ +++++|+++|++||.|.+|+|+.++ +||||+|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~ 252 (282)
T 3pgw_A 174 GLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE-TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252 (282)
T ss_pred CCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCc-CCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeC
Confidence 000 0 00011234689999999995 9999999999999999999999887 89999999
Q ss_pred CHHHHHHHHHcCCC-ccC-CeEEEEEeecC
Q 048615 222 KREEAEAALKSPDA-VMG-NRFIKLWWANR 249 (634)
Q Consensus 222 s~e~A~~Ai~~lng-~l~-gR~IkV~wak~ 249 (634)
+.++|.+|+..|+| .|+ |+.|+|.|+++
T Consensus 253 ~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999 788 99999999973
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=9.3e-24 Score=203.75 Aligned_cols=167 Identities=11% Similarity=0.153 Sum_probs=125.6
Q ss_pred CCccccccccccceeeeccee--------eeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSK--------NRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~--------~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+....+++.+..+|..+|.+. .+.+++. +.++|||||+|.+.++| +|| .|||..|.|++|+|.++..
T Consensus 12 Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 344567777888888774321 1112222 23489999999999999 999 8999999999999999876
Q ss_pred cCCCCccccc--cccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCH
Q 048615 152 KNMDPSTKAQ--NDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKR 223 (634)
Q Consensus 152 k~~~~~~~~~--~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~ 223 (634)
.......... ...............++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 88 YQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNY-LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp CCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTT-CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCC-CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH
Confidence 5422111000 00000001112245689999999995 999999999999999999999987 36999999999
Q ss_pred HHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 224 EEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 224 e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
++|.+|++.|+| .|+||.|+|.|+++...
T Consensus 167 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 167 NVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999 89999999999986543
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=4e-23 Score=206.46 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=132.7
Q ss_pred cccccCCCc-cccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 75 LPVRNAGTA-AVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 75 ~~v~n~~~~-~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
+.|+| +.. ..+++.+..+|.++|.|..+..++++ +|||||+|.+.++| +|+..|||..|.|++|+|.++...
T Consensus 37 l~V~n-Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 37 LLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp EEEES-CCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred EEEeC-CCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 34444 445 66788899999999998888777665 79999999999999 999999999999999999998765
Q ss_pred CCCCcc---------cccccc--ccc------cCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEec-CC
Q 048615 153 NMDPST---------KAQNDH--MRN------IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPL-NS 213 (634)
Q Consensus 153 ~~~~~~---------~~~~d~--~~~------~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~-dk 213 (634)
...... ..+... .+. ......++.++|||+|||++ +++++|+++|++|| .|..|+|++ ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS-VSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT-CCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc-CCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 311100 000000 000 00011234689999999995 99999999999999 999999955 78
Q ss_pred CeEEEEeCCHHHHHHHHHcCCC-ccC-CeEEEEEeecC
Q 048615 214 ERAFVQFSKREEAEAALKSPDA-VMG-NRFIKLWWANR 249 (634)
Q Consensus 214 g~AFV~F~s~e~A~~Ai~~lng-~l~-gR~IkV~wak~ 249 (634)
+||||+|.+.++|.+|+..|+| .++ ||.|+|.|+++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9999999999999999999999 788 99999999975
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.89 E-value=2e-23 Score=198.06 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=122.2
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|.++|.+.. ..+.+..++.++|||||+|.+.++| +|+ +|||..+.|++|+|.++..+....
T Consensus 21 Lp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~--- 95 (175)
T 1fje_B 21 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKK--- 95 (175)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCST---
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccc---
Confidence 3445677778888888777554 2344445556799999999999999 999 699999999999999987654211
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEe--cCCCeEEEEeCCHHHHHHHHHcCCC-c
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIP--LNSERAFVQFSKREEAEAALKSPDA-V 236 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~--~dkg~AFV~F~s~e~A~~Ai~~lng-~ 236 (634)
....++|||+|||++ +++++|+++|++||.|..+ .. ..++||||+|.+.++|.+|+..|+| .
T Consensus 96 -------------~~~~~~l~v~nlp~~-~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 96 -------------VRAARTLLAKNLSFN-ITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp -------------TGGGGEEEEESCCSS-CCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred -------------cccCCEEEEeCCCCC-CCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 122579999999995 9999999999999999877 11 1357999999999999999999999 8
Q ss_pred cCCeEEEEEeecCC
Q 048615 237 MGNRFIKLWWANRD 250 (634)
Q Consensus 237 l~gR~IkV~wak~~ 250 (634)
|+||.|+|.|+++.
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999999753
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=8.9e-24 Score=198.46 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=127.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|..+|.|..+..++++.++.++|||||+|.+.++| +|+.. +..+.|+.|.|.++.++...
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~---- 84 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQ---- 84 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHH----
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhc----
Confidence 344567888999999999999888888887788899999999999999 99975 67999999999877643210
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcC
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~l 233 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ |||||+|.+.++|.+|++ +
T Consensus 85 --------------~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 85 --------------DKTGKIFVGGIGPD-VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp --------------HHCEEEEEEEECTT-CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred --------------cCCCeEEECCCCCC-CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 11469999999995 9999999999999999999998864 599999999999999998 7
Q ss_pred CC-ccCCeEEEEEeecC
Q 048615 234 DA-VMGNRFIKLWWANR 249 (634)
Q Consensus 234 ng-~l~gR~IkV~wak~ 249 (634)
++ .|+||.|+|.|+.+
T Consensus 149 ~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp SEECSSSSCEEEEECCC
T ss_pred CCEEeCCeEEEEeecCC
Confidence 88 89999999999975
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=2.6e-23 Score=213.06 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=148.4
Q ss_pred CchhhhcccCC-CCCccccccCCCCCCccccccCCCCCCcccccCCCccccccccccceeeecceeeeeccccccCCCcC
Q 048615 37 TSPGLAALHSS-NDETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLN 115 (634)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~ 115 (634)
|..|+..+|+. +........... ....+||+.+ ....+++.+..+|..+|.|..+..+.++.++.++
T Consensus 70 A~~A~~~l~~~~~~g~~i~v~~~~-~~~~l~v~nl-----------p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~ 137 (284)
T 3smz_A 70 AEAAINAFHQSRLRERELSVQLQP-TDALLCVANL-----------PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSK 137 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC-CSCEEEEESC-----------CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE
T ss_pred HHHHHHHcCCCeeCCeEEEEEecC-CCCEEEEcCC-----------CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccc
Confidence 44588888887 333332221111 1223444444 3455777888888888888888777777777889
Q ss_pred ceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCC-CHHH
Q 048615 116 SLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSN-RREA 193 (634)
Q Consensus 116 GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~-te~~ 193 (634)
|||||+|.+.++| +|+..|||..+.|++|+|.++.++.... .....++|||+|||++ + ++++
T Consensus 138 g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~---------------~~~~~~~l~v~nlp~~-~~~~~~ 201 (284)
T 3smz_A 138 GYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP---------------ALLHSRCLCVDRLPPG-FNDVDA 201 (284)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT---------------TTTSCSEEEEECCCTT-CCCHHH
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc---------------ccCCccEEEEecCCcc-cCCHHH
Confidence 9999999999999 9999999999999999999987654221 1123579999999995 6 9999
Q ss_pred HHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 194 LLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 194 L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|+| .|+||.|+|.|+++..
T Consensus 202 l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999999887 57999999999999999999999 8999999999997543
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.88 E-value=4.5e-23 Score=194.53 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=124.6
Q ss_pred CccccccccccceeeecceeeeeccccccCC--CcCceEEEEcCCHHHH-HHHhccCCceeC---CEEEEEccCcccCCC
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDA--TLNSLDYLENETKEDR-EALPSLQGSYRR---GKRIIEGDAIQKNMD 155 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~--~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~---GR~I~V~~a~~k~~~ 155 (634)
....+++.+..+|.++|.|..+..++++.++ .++|||||+|.+.++| +|+..|||..+. +++|.+.++......
T Consensus 12 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (175)
T 3nmr_A 12 PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 91 (175)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc
Confidence 3456777888888888888888777777665 6799999999999999 999999998876 677888876544321
Q ss_pred CccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHH
Q 048615 156 PSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAAL 230 (634)
Q Consensus 156 ~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai 230 (634)
....++|||+|||++ +++++|+++|++||.|..|+++++ ++||||+|.+.++|.+|+
T Consensus 92 -----------------~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 92 -----------------AVEDRKLFIGMISKK-CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp -----------------CGGGSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred -----------------cCCCCeEEEcCCCCc-CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 112579999999995 999999999999999999999987 469999999999999999
Q ss_pred HcCCC-ccC---CeEEEEEee
Q 048615 231 KSPDA-VMG---NRFIKLWWA 247 (634)
Q Consensus 231 ~~lng-~l~---gR~IkV~wa 247 (634)
+.|+| .+. +|+|+|.||
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEEC
T ss_pred HHhcCCcccCCCCCCeEEEec
Confidence 99998 444 499999997
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=6.2e-23 Score=193.59 Aligned_cols=142 Identities=12% Similarity=0.197 Sum_probs=118.8
Q ss_pred CCccccccccccceeeec-----------ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEcc
Q 048615 81 GTAAVSQNTSMSVWGRIG-----------SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGD 148 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig-----------~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~ 148 (634)
+....+++.+..+|.++| .|..+.. . .++|||||+|.+.++| +|+ .|||..+.|++|+|.+
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---N---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---E---TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---c---CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecC
Confidence 444567788888888873 3333322 2 3389999999999999 999 9999999999999998
Q ss_pred CcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCC
Q 048615 149 AIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSK 222 (634)
Q Consensus 149 a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s 222 (634)
+...... ...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+
T Consensus 85 ~~~~~~~------------------~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 85 PHDYQPL------------------PGAHKLFIGGLPNY-LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp CSSCCCC------------------TTTTCEEEECCCTT-CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CcccCCC------------------CCCCEEEEEcCCCc-CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7543211 12579999999995 9999999999999999999999873 699999999
Q ss_pred HHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 223 REEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 223 ~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|.+|+..|+| .|+||.|+|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999 8999999999983
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=7.5e-23 Score=198.47 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=128.9
Q ss_pred CCc-cccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCcc
Q 048615 81 GTA-AVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPST 158 (634)
Q Consensus 81 ~~~-~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~ 158 (634)
+.. ..+++.+..+|.++|.|..+..+.++ +|||||+|.+.++| +|+..|||..+.|++|+|.++.........
T Consensus 11 lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 85 (198)
T 1qm9_A 11 LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR 85 (198)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSS
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCC
Confidence 344 55778888888888888877776654 79999999999999 999999999999999999988755311100
Q ss_pred ---------cccccc--cc------ccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEec-CCCeEEEE
Q 048615 159 ---------KAQNDH--MR------NIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPL-NSERAFVQ 219 (634)
Q Consensus 159 ---------~~~~d~--~~------~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~-dkg~AFV~ 219 (634)
..+... .+ .......++.++|||+|||++ +++++|+++|++|| .|..|+|.+ +++||||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~ 164 (198)
T 1qm9_A 86 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS-VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQ 164 (198)
T ss_dssp SSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTT-CCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEE
T ss_pred cCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCC-CCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEE
Confidence 000000 00 000011234789999999995 99999999999999 999999966 67999999
Q ss_pred eCCHHHHHHHHHcCCC-ccC-CeEEEEEeecC
Q 048615 220 FSKREEAEAALKSPDA-VMG-NRFIKLWWANR 249 (634)
Q Consensus 220 F~s~e~A~~Ai~~lng-~l~-gR~IkV~wak~ 249 (634)
|.+.++|.+|+..++| .++ |+.|+|.|+++
T Consensus 165 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 165 MGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred eCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999999999 788 99999999974
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=9.3e-23 Score=201.72 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=125.4
Q ss_pred ccccCCC-ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 76 PVRNAGT-AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 76 ~v~n~~~-~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
.|+| +. ...+++.++.+|..+|.|..++.++++ +|||||+|.+.++| .||..|||..|.||+|+|.++..+.
T Consensus 8 ~V~n-L~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 8 MVYG-LDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp EEEC-CCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred EEeC-CCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 4444 44 356777888888888888888777643 79999999999999 9999999999999999999987543
Q ss_pred CCCcc-----------cccccc--ccc------cCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCE--EEEEEecC
Q 048615 154 MDPST-----------KAQNDH--MRN------IRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEV--VDIYIPLN 212 (634)
Q Consensus 154 ~~~~~-----------~~~~d~--~~~------~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I--~~v~v~~d 212 (634)
..+.. +.+... .+. ......++.++|||+|||++ +++++|+++|++||.| ..|+|+.+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~-~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLE-VTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTT-CCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 21110 000000 000 00001234679999999995 9999999999999999 89999876
Q ss_pred C----CeEEEEeCCHHHHHHHHHcCCC-ccCCe----EEEEEee
Q 048615 213 S----ERAFVQFSKREEAEAALKSPDA-VMGNR----FIKLWWA 247 (634)
Q Consensus 213 k----g~AFV~F~s~e~A~~Ai~~lng-~l~gR----~IkV~wa 247 (634)
+ +||||+|.+.++|.+||..||| .|+|+ ++.|.|+
T Consensus 161 ~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3 6999999999999999999999 78776 5666664
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.87 E-value=5.3e-22 Score=202.24 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=119.0
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccc
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQ 161 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~ 161 (634)
...+++.+..+|..+|.|..+..++ .+|||||+|.+.++| +|+..|||..|.|++|+|.++.+
T Consensus 32 ~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~---------- 95 (261)
T 3sde_A 32 TDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH---------- 95 (261)
T ss_dssp TTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----------
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----------
Confidence 3557777888888888877776543 279999999999999 99999999999999999998752
Q ss_pred cccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCC-C
Q 048615 162 NDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPD-A 235 (634)
Q Consensus 162 ~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~ln-g 235 (634)
.++|||+|||+. +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..++ +
T Consensus 96 --------------~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 96 --------------GAALTVKNLSPV-VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp --------------SSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred --------------CCcccccCCCCC-CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 369999999995 999999999999999999999887 4799999999999999999995 4
Q ss_pred -ccC---CeEEEEEeecCC
Q 048615 236 -VMG---NRFIKLWWANRD 250 (634)
Q Consensus 236 -~l~---gR~IkV~wak~~ 250 (634)
.+. +|+|.|.|+...
T Consensus 161 ~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEESSSSCCBCEEEECCCE
T ss_pred eEEecCCCceEEEeecccc
Confidence 444 999999999754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=5.8e-22 Score=203.78 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=123.8
Q ss_pred Cccccccccccceeeec-ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 82 TAAVSQNTSMSVWGRIG-SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig-~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
....+.+.+..+|..+| .|..+..+.++. +.++|||||+|.+.++| +|+..|||..|.|++|+|.++.+.......
T Consensus 126 p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~- 203 (292)
T 2ghp_A 126 PPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT- 203 (292)
T ss_dssp CTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-
Confidence 34457777888888888 888777776665 46699999999999999 999999999999999999998765422111
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCC-CCHHHHHHhhccCCCEEEEEEecC-------CCeEEEEeCCHHHHHHHHH
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKS-NRREALLSHFQKFGEVVDIYIPLN-------SERAFVQFSKREEAEAALK 231 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~-~te~~L~~~FskfG~I~~v~v~~d-------kg~AFV~F~s~e~A~~Ai~ 231 (634)
.......++|||+|||+ . +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+
T Consensus 204 ----------~~~~~~~~~l~v~nlp~-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 204 ----------DSATLEGREIMIRNLST-ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp -------------CCTTTEEEEEEECT-TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ----------cccCCCCceEEEECCCc-ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 01123468999999999 7 999999999999999999999875 369999999999999999
Q ss_pred cCCC-ccCCeEEEEEeecC
Q 048615 232 SPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 232 ~lng-~l~gR~IkV~wak~ 249 (634)
.++| .|+||.|+|.|+++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp GGTTEEETTEEEEEEECCC
T ss_pred HhcCCEECCcEEEEEEecC
Confidence 9999 89999999999975
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=1.2e-19 Score=185.54 Aligned_cols=76 Identities=26% Similarity=0.484 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHH----HhhccCCCEEEEEEec---CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALL----SHFQKFGEVVDIYIPL---NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~----~~FskfG~I~~v~v~~---dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
+++++|||+|||++ +++++|+ ++|++||.|.+|+|++ .++||||+|.+.++|.+|++.++| .|.||.|+|.
T Consensus 7 ~~~~~l~V~nlp~~-~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEK-IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 45789999999995 9999977 8999999999999886 357999999999999999999999 7999999999
Q ss_pred eecCC
Q 048615 246 WANRD 250 (634)
Q Consensus 246 wak~~ 250 (634)
|++..
T Consensus 86 ~a~~~ 90 (282)
T 3pgw_A 86 YAKTD 90 (282)
T ss_pred EeccC
Confidence 99643
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1e-20 Score=177.13 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=110.4
Q ss_pred CcCceEEEEcCCHHHH-HHHhcc-CCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCC
Q 048615 113 TLNSLDYLENETKEDR-EALPSL-QGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNR 190 (634)
Q Consensus 113 ~s~GfgFVeF~~~e~A-~Ai~~m-nG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~t 190 (634)
.++|+++|+|.+.++| +|+..| ||..++| +|++.++..+........ ..............++|||+|||++ ++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~-~t 86 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNN-GN 86 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSC-CS
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCC-CC
Confidence 4689999999999999 999999 9999999 999998875431100000 0000011122345789999999995 99
Q ss_pred HHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 191 REALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 191 e~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
+++|+.+|++||.|.+|+|+.+ ++||||+|.+.++|.+|+..|+| .|+||.|+|.|+++.+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999998 89999999999999999999999 8999999999998653
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.82 E-value=4.4e-19 Score=177.12 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCC-CCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPL-KSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~-d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
+++++|||+|||+ + +++++|+++|++||.|.+|+|++++ +||||+|.+.++|.+|++.+++ .|+|+.|+|.|++..
T Consensus 32 ~~~~~l~V~nLp~~~-~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTT-CCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 4478999999999 7 9999999999999999999999885 8999999999999999999999 899999999999743
No 24
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=1.5e-19 Score=178.56 Aligned_cols=73 Identities=21% Similarity=0.436 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.|.+|+|++++ +||||+|.+.++|.+|++.+++ .+.||.|++.|+
T Consensus 14 p~~tlfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPD-VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4689999999995 9999999999999999999999864 5999999999999999999999 799999998875
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
.
T Consensus 93 ~ 93 (213)
T 4f02_A 93 Q 93 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=171.53 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=69.6
Q ss_pred CCEEEEeCCCC-CCCCHHHHHHhhccCCCEEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 176 LRTLFVNNVPL-KSNRREALLSHFQKFGEVVDIYIPLNS-ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp~-d~~te~~L~~~FskfG~I~~v~v~~dk-g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
+++|||+|||+ + +++++|+++|++||.|.+|+|+.++ +||||+|.+.++|.+|+..++| .++|+.|+|.|++..
T Consensus 3 ~~~l~v~nlp~~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSS-CCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCccc-CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 57999999999 7 9999999999999999999999885 8999999999999999999999 899999999999744
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.81 E-value=3.4e-19 Score=167.91 Aligned_cols=71 Identities=25% Similarity=0.478 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccC----C-------CEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKF----G-------EVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fskf----G-------~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
.++|||+|||++ +++++|+++|++| | .|.++.+..+++||||+|.+.++|.+|+ .+++ .++|+.|+
T Consensus 4 ~~~l~V~nLp~~-~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 4 ARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGEEEEESCCTT-CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred ccEEEEcCCCcc-cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 589999999995 9999999999999 7 8999999999999999999999999999 8999 89999999
Q ss_pred EEeec
Q 048615 244 LWWAN 248 (634)
Q Consensus 244 V~wak 248 (634)
|.|++
T Consensus 82 v~~~~ 86 (172)
T 2g4b_A 82 IRRPH 86 (172)
T ss_dssp EECCS
T ss_pred ecCCc
Confidence 98753
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=5.7e-19 Score=165.47 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
+++|||+|||++ +++++|+++|++||.|.+|++++++ +||||+|.+.++|.+|++.+++ .++|+.|+|.|++
T Consensus 3 ~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQD-MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 589999999995 9999999999999999999998764 6999999999999999999999 7999999999874
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=1.5e-18 Score=167.08 Aligned_cols=71 Identities=25% Similarity=0.478 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccC----C-------CEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKF----G-------EVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fskf----G-------~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
.++|||+|||++ +++++|+++|++| | .|.++.+...++||||+|.+.++|.+|+ .++| .|+|+.|+
T Consensus 4 ~~~l~V~nLp~~-~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 4 ARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred eeEEEEcCCCCC-CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 589999999995 9999999999999 6 8999999999999999999999999999 8999 89999999
Q ss_pred EEeec
Q 048615 244 LWWAN 248 (634)
Q Consensus 244 V~wak 248 (634)
|.|++
T Consensus 82 v~~~~ 86 (198)
T 2yh0_A 82 IRRPH 86 (198)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99876
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=1.2e-18 Score=170.01 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.+++ .|+|+.|+|.|+.
T Consensus 28 ~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYE-LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 579999999995 999999999999999999999875 47999999999999999999999 8999999997653
No 30
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.2e-19 Score=163.91 Aligned_cols=71 Identities=28% Similarity=0.478 Sum_probs=66.4
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
++|||+|||++ +++++|+++|++||.|.+|+++.++ +||||+|.+.++|.+|+..+++ .+.|+.|+|.|+.
T Consensus 1 R~l~V~nlp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKA-ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETT-CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCc-CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 58999999995 9999999999999999999998765 6999999999999999999999 7999999999874
No 31
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.5e-19 Score=168.47 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=100.5
Q ss_pred CcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCH
Q 048615 113 TLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRR 191 (634)
Q Consensus 113 ~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te 191 (634)
+++|||||+|.+.++| +|+..+++.......+.+........... ..............++|||+|||++ +++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~nl~~~-~~~ 84 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVDNLTYR-TSP 84 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEESCCTT-CCH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEeCCCCC-CCH
Confidence 4689999999999999 99988887544433434332221110000 0000000111233689999999995 999
Q ss_pred HHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 192 EALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 192 ~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+..|+| .|+||.|+|.|+++.+.
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999998863 6999999999999999999999 89999999999986554
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=1.7e-18 Score=166.60 Aligned_cols=73 Identities=26% Similarity=0.474 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|.+|.|+.++ +||||+|.+.++|.+|+.. ++ .|+|+.|+|.|
T Consensus 11 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGLSFE-TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34689999999995 9999999999999999999999864 5999999999999999988 55 89999999998
Q ss_pred ec
Q 048615 247 AN 248 (634)
Q Consensus 247 ak 248 (634)
+.
T Consensus 89 ~~ 90 (196)
T 1l3k_A 89 AV 90 (196)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 33
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=2e-18 Score=161.11 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|++++++ +||||+|.+.++|.+|++.+++ .++|+.|+|.|++
T Consensus 2 ~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQN-MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999995 9999999999999999999999876 7999999999999999999999 8999999999874
No 34
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=1.9e-17 Score=163.59 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCEEEEeCCC-CCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 176 LRTLFVNNVP-LKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp-~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
+++|||+||| +. +++++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.||| .|.||.|+|.|++..
T Consensus 4 ~~~l~V~nL~~~~-~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSK-MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTT-CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCccc-CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 6899999999 74 999999999999999999999986 58999999999999999999999 899999999999743
No 35
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1.2e-17 Score=156.51 Aligned_cols=70 Identities=20% Similarity=0.369 Sum_probs=62.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|++++ +||||+|.+.++|.+|+..+ ..++|+.|.|.|+
T Consensus 3 ~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 3 SCKMFIGGLNWD-TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRA 78 (167)
T ss_dssp GGEEEECSCCTT-CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEEC
T ss_pred CcEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccc
Confidence 589999999995 9999999999999999999998864 69999999999999999962 3788888876654
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.75 E-value=1.4e-17 Score=169.56 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+.+|++||.|..|.|.++++||||+|.+.++|.+|+..++| .|+|+.|+|.|+
T Consensus 21 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 21 QRCRLFVGNLPTD-ITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp GGGEEEEESCCTT-CCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3689999999995 99999999999999999999999999999999999999999999999 799999999885
No 37
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=3.3e-17 Score=154.19 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=54.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC--------CCeEEEEeCCHHHHHHHHHcCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--------SERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d--------kg~AFV~F~s~e~A~~Ai~~lng 235 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.+++
T Consensus 3 ~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 3 AIKMFVGQVPRT-WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp CEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 579999999995 999999999999999999999864 36999999999999999999987
No 38
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=3.7e-17 Score=154.78 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEE-----EEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVV-----DIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~-----~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|..||.|. +...-..++||||+|.+.++|.+|++ +++ .|+|+.|+|.|+
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPN-KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTT-SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 44789999999995 99999999999998644 33444467899999999999999995 998 899999999987
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
.
T Consensus 89 ~ 89 (175)
T 1fje_B 89 K 89 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=138.67 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCC-CCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecCC
Q 048615 175 ALRTLFVNNVPL-KSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANRD 250 (634)
Q Consensus 175 ~~~tLfVgnLp~-d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~~ 250 (634)
+.++|||+|||+ + +++++|+++|++||.|.+|.|+++++||||+|.+.++|..|++.|++ .|+||+|+|.|++..
T Consensus 14 p~~~l~V~nLp~~~-~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGK-NLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSS-SHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCc-CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 468999999999 8 99999999999999999999999999999999999999999999885 499999999999854
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=137.12 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|++.|+| .|+||.|+|.||+
T Consensus 19 gt~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQN-MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 579999999995 9999999999999999999999865 5999999999999999999999 8999999999997
Q ss_pred C
Q 048615 249 R 249 (634)
Q Consensus 249 ~ 249 (634)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 41
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=1.8e-16 Score=146.54 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=73.1
Q ss_pred CceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHH
Q 048615 115 NSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREA 193 (634)
Q Consensus 115 ~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~ 193 (634)
.-|.|.+|.+...+ .||..|+|....|+.- ..+..+ .+.....++|||+|||++ +++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------~~~~~~~~~l~V~nLp~~-~te~~ 63 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------PPDVEGMTSLKVDNLTYR-TSPDT 63 (135)
T ss_dssp --------------------------------CCSCCS------------------CSSGGGCCCEEEECCCSS-CHHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC------------------CCCCCCCCEEEEeCCCCC-CCHHH
Confidence 34677888888888 9999999877666541 111110 011223689999999995 99999
Q ss_pred HHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCCC
Q 048615 194 LLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSIP 253 (634)
Q Consensus 194 L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~~ 253 (634)
|+++|++||.|..|.|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++...+
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999999999998763 6999999999999999999999 899999999999866544
No 42
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=140.06 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC--C-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD--A-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln--g-~l~gR~IkV~wak~~ 250 (634)
.+.++|||+|||++ +++++|+++|++||.|.+|+|+++++||||+|.+.++|.+|++.++ + .|+||+|+|.|+++.
T Consensus 14 ~~~~~LfV~nLp~~-vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTT-SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 44689999999996 9999999999999999999999999999999999999999999775 3 699999999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 93 ~~ 94 (105)
T 1sjq_A 93 EL 94 (105)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 43
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=131.22 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+..+++ .|+|+.|+|.|+++...
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPRE-ATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSS-CCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 44689999999995 9999999999999999999998 78999999999999999999999 89999999999987655
Q ss_pred CC
Q 048615 253 PD 254 (634)
Q Consensus 253 ~~ 254 (634)
..
T Consensus 83 ~~ 84 (90)
T 2dnq_A 83 AS 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 44
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=3.5e-16 Score=148.87 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=71.8
Q ss_pred EEcCCHHHH-HHHhccCCceeC--CEEEEEccCcccCCCCcccccc--ccc-cccCCCCCCCCCEEEEeCCCCCCCCHHH
Q 048615 120 LENETKEDR-EALPSLQGSYRR--GKRIIEGDAIQKNMDPSTKAQN--DHM-RNIRKPSQKALRTLFVNNVPLKSNRREA 193 (634)
Q Consensus 120 VeF~~~e~A-~Ai~~mnG~~l~--GR~I~V~~a~~k~~~~~~~~~~--d~~-~~~~~~s~~~~~tLfVgnLp~d~~te~~ 193 (634)
++|++.++| .|+..|++.... ||.+++.+......... .... ... ....+......++|||+|||+. +++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSY-ERVRNEDDDELEPGPQRSVEGWILFVTSIHEE-AQEDE 88 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTT-CCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCc-cccccCCCCCCCCCCCCCCCCCEEEEeCCCCC-CCHHH
Confidence 789999999 999999997765 66666665332111000 0000 000 1111222345789999999995 99999
Q ss_pred HHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 194 LLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 194 L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
|+.+|++||.|..|.|+.+ ++||||+|.+.++|.+||..|+| .|+|+.|+|.|+++...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999987 37999999999999999999999 79999999999976543
No 45
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=134.02 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC--C-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD--A-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln--g-~l~gR~IkV~wak~~ 250 (634)
++.++|||+|||++ +++++|+.+|++||.|.+|.|+++++||||+|.+.++|.+|++.++ + .|+||+|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~-~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGE-VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTT-CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 44689999999996 9999999999999999999999999999999999999999999774 4 699999999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 92 ~~ 93 (101)
T 2cq1_A 92 EL 93 (101)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=130.23 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+|++.|++ .|+|+.|+|.|+
T Consensus 4 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFN-ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3689999999995 9999999999999999999998874 6999999999999999999999 899999999999
Q ss_pred cCCCCCC
Q 048615 248 NRDSIPD 254 (634)
Q Consensus 248 k~~~~~~ 254 (634)
++...++
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8665543
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=133.44 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=74.6
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC---CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN---SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d---kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
....++|||+|||++ +++++|+++|++||.|..|.|..+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|++
T Consensus 19 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPD-IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 345789999999995 999999999999999999999876 46999999999999999999999 8999999999998
Q ss_pred CCCCCCCCC
Q 048615 249 RDSIPDDGI 257 (634)
Q Consensus 249 ~~~~~~~g~ 257 (634)
+.+.+..+.
T Consensus 98 ~~~~~~~~~ 106 (109)
T 1x4a_A 98 SGRGTGSGP 106 (109)
T ss_dssp CCCCCCCCS
T ss_pred cCCCCCCCC
Confidence 776554333
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=130.34 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFR-FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 44689999999995 999999999999999999999987 57999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 65543
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=129.72 Aligned_cols=79 Identities=25% Similarity=0.362 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYT-SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34689999999995 9999999999999999999998875 7999999999999999999999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=132.51 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-------CCeEEEEeCCHHHHHHHHHcC-CC-ccCCeEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-------SERAFVQFSKREEAEAALKSP-DA-VMGNRFIKL 244 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-------kg~AFV~F~s~e~A~~Ai~~l-ng-~l~gR~IkV 244 (634)
...++|||+|||+. +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..| ++ .|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQ-ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 45789999999995 999999999999999999999887 579999999999999999999 88 899999999
Q ss_pred EeecCCCCC
Q 048615 245 WWANRDSIP 253 (634)
Q Consensus 245 ~wak~~~~~ 253 (634)
.|+++....
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876544
No 51
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=131.87 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+.+|++||.|..|+|.++++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+++...
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD-ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 34689999999995 99999999999999999999999999999999999999999999999 89999999999986554
No 52
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=129.38 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++...
T Consensus 8 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 8 KASTKLHVGNISPT-CTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCCSS-CCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 44689999999995 999999999999999999998854 999999999999999999999 89999999999986655
Q ss_pred CC
Q 048615 253 PD 254 (634)
Q Consensus 253 ~~ 254 (634)
..
T Consensus 85 ~~ 86 (92)
T 2dgt_A 85 TA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=133.97 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~~ 250 (634)
++.++|||+|||++ +++++|+++|++||.|.+|.|+++++||||+|.+.++|.+|++.+++ .|+||.|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~-~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCES-VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSS-CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 45689999999996 99999999999999999999999999999999999999999998865 499999999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 54
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=127.67 Aligned_cols=75 Identities=28% Similarity=0.519 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcC-CC-ccCCeEEEEEeec
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP-DA-VMGNRFIKLWWAN 248 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~l-ng-~l~gR~IkV~wak 248 (634)
....++|||+|||++ +++++|+++|++||.|..|+++++++||||+|.+.++|.+|+..| ++ .++|+.|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDT-ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTT-SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345789999999995 999999999999999999999999999999999999999999999 88 8999999999985
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=130.94 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEE-EEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDI-YIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v-~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+.++|||+|||++ +++++|+.+|++||.|..| +|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPE-IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3689999999995 9999999999999999999 99886 47999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 048615 247 ANRDSIPD 254 (634)
Q Consensus 247 ak~~~~~~ 254 (634)
+++....+
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98665543
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=130.85 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEK-VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999995 9999999999999999999998865 5999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 048615 247 ANRDSIPD 254 (634)
Q Consensus 247 ak~~~~~~ 254 (634)
+++.....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98766543
No 57
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=133.97 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+.+|++||.|..|+|+.+++||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++...
T Consensus 23 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASG-LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSC-CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34689999999995 99999999999999999999999999999999999999999999999 89999999999986544
No 58
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=133.92 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~~ 250 (634)
+++++|||+|||++ +++++|+++|++||.|.+|.|++.++||||+|.+.++|.+|++.+++ .|+||+|+|.|++.+
T Consensus 19 ~ps~~l~V~NLp~~-~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDG-VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 45689999999996 99999999999999999999999999999999999999999999987 389999999999854
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.1e-15 Score=129.87 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRD-VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCcc-CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 44689999999995 999999999999999999999985 47999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 65543
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=130.65 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHH----HhhccCCCEEEEEEecC---CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVPLKSNRREALL----SHFQKFGEVVDIYIPLN---SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~----~~FskfG~I~~v~v~~d---kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
..++|||+|||++ +++++|+ ++|++||.|.+|+|+.+ ++||||+|.+.++|.+|++.|+| .|+||.|+|.|
T Consensus 8 ~~~~l~V~nL~~~-~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYR-LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTT-SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3689999999995 9999999 99999999999999987 68999999999999999999999 79999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 986544
No 61
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=130.47 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccC--CeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMG--NRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~--gR~IkV~wak~~ 250 (634)
.+.++|||+|||++ +++++|+++|++||.|.+|.+..+++||||+|.+.++|.+|++.|++ .|+ |+.|+|.|+++.
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPN-TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSS-CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34689999999995 99999999999999999999999999999999999999999999999 788 999999999865
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
.
T Consensus 94 ~ 94 (97)
T 1why_A 94 P 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=130.95 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDG-IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTT-CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34689999999995 999999999999999999999976 57999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
+...+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=128.12 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|++ +++ .|+|+.|+|.|
T Consensus 8 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHN-CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSS-CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 44689999999995 999999999999999999999876 4799999999999999999 888 89999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986554
No 64
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=128.91 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCC-----eEEEEEe
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGN-----RFIKLWW 246 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~g-----R~IkV~w 246 (634)
....++|||+|||++ +++++|+++|++||.|..|.|+.+ +||||+|.+.++|.+||+.|++ .|+| +.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPS-GSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSS-CCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 345789999999995 999999999999999999999998 9999999999999999999999 7999 9999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 986543
No 65
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=137.27 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=71.9
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~~ 250 (634)
++.++|||+|||++ +++++|+++|++||.|.+|+|+++++||||+|.+.++|.+|++.+++ .|+||+|+|.|+++.
T Consensus 29 ~ps~~LfVgNLp~~-vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTT-CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 44689999999996 99999999999999999999999999999999999999999998874 699999999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 108 ~~ 109 (119)
T 2ad9_A 108 EL 109 (119)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=130.23 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 10 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFD-TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34689999999995 999999999999999999999886 36999999999999999999999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=130.54 Aligned_cols=79 Identities=29% Similarity=0.446 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYR-TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44689999999995 999999999999999999999876 36999999999999999999999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9866543
No 68
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=130.19 Aligned_cols=79 Identities=30% Similarity=0.441 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 10 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSS-CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34689999999995 999999999999999999999876 47999999999999999999999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9866543
No 69
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=2.2e-15 Score=135.02 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|++++ +||||+|.+.++|.+|++.|++ .|+||.|+|.|+++.
T Consensus 5 ~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKS-IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCC-CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 579999999995 9999999999999999999999874 6999999999999999999999 899999999999754
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 70
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=130.60 Aligned_cols=77 Identities=13% Similarity=0.268 Sum_probs=68.9
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC--ccCCeEEEEEee
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA--VMGNRFIKLWWA 247 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng--~l~gR~IkV~wa 247 (634)
.+|||+|||++ +++++|+++|++|| .|.+|+|++++ |||||+|.+.++|.+|++.+++ .|+||.|+|.|+
T Consensus 2 ~~i~v~nLp~~-~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQA-ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSS-CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999995 99999999999999 89999998763 6999999999999999998854 699999999999
Q ss_pred cCCCCCC
Q 048615 248 NRDSIPD 254 (634)
Q Consensus 248 k~~~~~~ 254 (634)
++.....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8765543
No 71
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=3.3e-15 Score=128.42 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
....|||+||++. +++++|+++|.+||+|.++++...+|||||+|.+.++|.+|++.||+ .++||.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~-~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQ-IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTT-CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCcc-CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3579999999996 99999999999999999999999999999999999999999999999 8999999999995
No 72
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=126.39 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=69.8
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++...
T Consensus 7 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA-CTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTT-CCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 34689999999995 99999999999999999999985 4999999999999999999999 89999999999986644
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=131.96 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+|++.|+| .|+|+.|+|.|+++
T Consensus 7 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRE-TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTT-CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 579999999995 9999999999999999999999875 8999999999999999999999 89999999999986
Q ss_pred CCCCC
Q 048615 250 DSIPD 254 (634)
Q Consensus 250 ~~~~~ 254 (634)
.....
T Consensus 86 ~~~~~ 90 (116)
T 2fy1_A 86 PSFQS 90 (116)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 65443
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=127.66 Aligned_cols=78 Identities=24% Similarity=0.390 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC---------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN---------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d---------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
+.++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFS-TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3689999999995 999999999999999999999863 35999999999999999999999 899999999
Q ss_pred EeecCCCCC
Q 048615 245 WWANRDSIP 253 (634)
Q Consensus 245 ~wak~~~~~ 253 (634)
.|+++...+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999866544
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=135.53 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCCCC-CCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC---ccCCeEEEEEeecC
Q 048615 174 KALRTLFVNNVPLKS-NRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA---VMGNRFIKLWWANR 249 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~-~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng---~l~gR~IkV~wak~ 249 (634)
.+.++|||+|||+ . +++++|+++|++||.|.+|+|++.++||||+|.+.++|.+|++.|++ .|+||.|+|.|++.
T Consensus 23 ~p~~~l~V~NLp~-~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPH-SGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCC-SSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCC-ccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 4578999999999 5 89999999999999999999999999999999999999999998864 59999999999976
Q ss_pred CCC
Q 048615 250 DSI 252 (634)
Q Consensus 250 ~~~ 252 (634)
...
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 554
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=3e-15 Score=127.78 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFD-FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTT-CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999995 999999999999999999999875 36999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
+...+
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76554
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9.5e-15 Score=128.94 Aligned_cols=78 Identities=26% Similarity=0.378 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCC------C-ccCCe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPD------A-VMGNR 240 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~ln------g-~l~gR 240 (634)
...++|||+|||++ +++++|+.+|++||.|..|+|+.+ ++||||+|.+.++|.+|+..++ + .|+|+
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFD-SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 44689999999995 999999999999999999999876 4799999999999999999998 8 79999
Q ss_pred EEEEEeecCCCC
Q 048615 241 FIKLWWANRDSI 252 (634)
Q Consensus 241 ~IkV~wak~~~~ 252 (634)
.|+|.|+++...
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999986544
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.8e-15 Score=126.77 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|++.|++ .|+|+.|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFS-CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 44689999999995 9999999999999999999999875 7999999999999999999999 899999999999
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
++..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 79
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=4.6e-15 Score=124.58 Aligned_cols=74 Identities=31% Similarity=0.474 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
.+.++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.++| .++|+.|+|.|
T Consensus 5 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTT-CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34689999999995 999999999999999999999775 47999999999999999999999 89999999999
Q ss_pred ec
Q 048615 247 AN 248 (634)
Q Consensus 247 ak 248 (634)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=127.26 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
.+.++|||+|||++ +++++|+++|++|| |..|+|+.+ ++||||+|.+.++|.+|+ .+++ .|+|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD-VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34689999999995 99999999999999 999999876 469999999999999999 9999 8999999999
Q ss_pred eecCCCCC
Q 048615 246 WANRDSIP 253 (634)
Q Consensus 246 wak~~~~~ 253 (634)
|+++....
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99866543
No 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=5.1e-15 Score=131.99 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+..++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQE-FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSS-CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44689999999995 9999999999999999999999875 5999999999999999999999 89999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 986554
No 82
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-15 Score=130.64 Aligned_cols=75 Identities=19% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
...++|||+|||++ +++++|+.+|++||.|.+|+|.+.++||||+|.+.++|.+|+..++| .|+|+.|+|.|+++
T Consensus 25 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHF-ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTT-CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcc-cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 34689999999995 99999999999999999999999999999999999999999999999 89999999999974
No 83
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=5.8e-15 Score=123.41 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=68.6
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
++|||+|||++ +++++|+++|++||.|..|.|+++ ++||||+|.+.++|.+|+..++| .++|+.|+|.|+++
T Consensus 2 ~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVN-VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTT-CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999995 999999999999999999999987 46999999999999999999999 89999999999975
Q ss_pred C
Q 048615 250 D 250 (634)
Q Consensus 250 ~ 250 (634)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=124.77 Aligned_cols=76 Identities=28% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccC--CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKF--GEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~Fskf--G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
...++|||+|||++ +++++|+.+|++| |.|..|.+. ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++.
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLS-TSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 34689999999995 9999999999999 999998875 67999999999999999999999 899999999999866
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 85
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=1e-14 Score=127.66 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCC---eEEEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGN---RFIKLW 245 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~g---R~IkV~ 245 (634)
..++|||+|||++ +++++|+.+|++||.|..|+|+.+ ++||||+|.+.++|.+|++.|++ .+.| +.|+|.
T Consensus 14 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQ-QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999995 999999999999999999999987 57999999999999999999999 6777 999999
Q ss_pred eecCCCC
Q 048615 246 WANRDSI 252 (634)
Q Consensus 246 wak~~~~ 252 (634)
|+++...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986554
No 86
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=124.17 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+..++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFS-LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTT-SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45689999999995 999999999999999999999876 36999999999999999999999 89999999999
Q ss_pred ec
Q 048615 247 AN 248 (634)
Q Consensus 247 ak 248 (634)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=132.59 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
.++|||+|||++ +++++|+.+|++||.|..|.|++.++||||+|.+.++|.+|++.|+| .|+||.|+|.|++...
T Consensus 10 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAG-TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 579999999996 99999999999999999999999999999999999999999999999 8999999999998543
No 88
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=125.82 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSED-TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34689999999995 9999999999999999999999874 5999999999999999999999 89999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986654
No 89
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-14 Score=123.43 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|+ + +++++|+++|++||.|..|.|...++||||+|.+.++|.+|+..|++ .|+|+.|+|.|+++...
T Consensus 13 ~~~~~l~V~n~--~-~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--D-MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--S-CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--C-CCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 34689999995 4 89999999999999999999998899999999999999999999999 89999999999986544
No 90
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=131.07 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.|.+|+|+.++ |||||+|.+.++|.+|++.||| .|+||.|+|.|+
T Consensus 5 p~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDN-VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999995 9999999999999999999998864 5999999999999999999999 899999999999
Q ss_pred cCC
Q 048615 248 NRD 250 (634)
Q Consensus 248 k~~ 250 (634)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 91
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=4.3e-15 Score=131.56 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCC-CCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 175 ALRTLFVNNVPLKS-NRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 175 ~~~tLfVgnLp~d~-~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
..++|||+|||+ . +++++|+++|++||.|..|.| .++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+++.+.
T Consensus 26 ~~~~l~V~nl~~-~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNLNT-ALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSCCC-SSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCCCc-ccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 358999999999 7 899999999999999999998 578999999999999999999999 89999999999986544
Q ss_pred C
Q 048615 253 P 253 (634)
Q Consensus 253 ~ 253 (634)
.
T Consensus 103 ~ 103 (110)
T 1wf1_A 103 D 103 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 92
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.56 E-value=7.9e-15 Score=126.57 Aligned_cols=75 Identities=20% Similarity=0.503 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|.+|++.++| .|+|+.|+|.|++
T Consensus 2 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYD-QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999995 999999999999999999999887 47999999999999999999999 8999999999998
Q ss_pred CCC
Q 048615 249 RDS 251 (634)
Q Consensus 249 ~~~ 251 (634)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 93
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=2.5e-14 Score=127.35 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=72.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44689999999995 9999999999999999999999874 6999999999999999999999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9865543
No 94
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=134.13 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|.+|+|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 40 ~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTT-VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTT-CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999995 9999999999999999999998763 5999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 048615 247 ANRDSIPD 254 (634)
Q Consensus 247 ak~~~~~~ 254 (634)
+++.....
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98765543
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=6.6e-15 Score=133.21 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 20 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEE-ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34689999999995 999999999999999999999887 57999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 048615 247 ANRDSIPD 254 (634)
Q Consensus 247 ak~~~~~~ 254 (634)
+++...+.
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98665543
No 96
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=124.23 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.|.+|+|+.++ +||||+|.+.++|.+|++.+++ .++|+.|+|.|+
T Consensus 5 ~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPE-ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3589999999995 9999999999999999999999874 6999999999999999999999 899999999999
Q ss_pred cC
Q 048615 248 NR 249 (634)
Q Consensus 248 k~ 249 (634)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 97
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.3e-15 Score=128.51 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCC-CCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 174 KALRTLFVNNVPL-KSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 174 ~~~~tLfVgnLp~-d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
++.++|||+|||+ + +++++|+.+|++||.|..|.|. ++||||+|.+.++|.+|+..|++ .++|+.|+|.|+++..
T Consensus 8 ~~~~~l~V~nlp~~~-~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKN-VSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSC-CCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCccc-CCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4468999999998 7 9999999999999999999986 78999999999999999999999 7999999999998765
Q ss_pred CCC
Q 048615 252 IPD 254 (634)
Q Consensus 252 ~~~ 254 (634)
.+.
T Consensus 85 ~~~ 87 (96)
T 2kvi_A 85 RPQ 87 (96)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=129.45 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEE--------EEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVV--------DIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMG 238 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~--------~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~ 238 (634)
...++|||+|||++ +++++|+++|++||.|. .|+|+.+ ++||||+|.+.++|.+|+..|++ .|+
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDS-VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34689999999995 99999999999999999 6999887 36999999999999999999999 899
Q ss_pred CeEEEEEeecCCCCC
Q 048615 239 NRFIKLWWANRDSIP 253 (634)
Q Consensus 239 gR~IkV~wak~~~~~ 253 (634)
|+.|+|.|+++....
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999866543
No 99
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-14 Score=126.85 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+..+++.|+|+.|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYH-TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSS-CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 45789999999995 9999999999999999999998864 5999999999999999999999999999999999
Q ss_pred cCCCCC
Q 048615 248 NRDSIP 253 (634)
Q Consensus 248 k~~~~~ 253 (634)
+....+
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 765544
No 100
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=2.2e-14 Score=125.53 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSIP 253 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~~ 253 (634)
..++|||+|||++ +++++|+++|++||.|..|.|+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+++....
T Consensus 10 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANT-VTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTT-CCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 4689999999995 9999999999999999999987 56999999999999999999999 899999999999765543
No 101
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.5e-15 Score=130.27 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCCCHHHHH---HhhccCCCEEEEEEecCC---------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEE
Q 048615 176 LRTLFVNNVPLKSNRREALL---SHFQKFGEVVDIYIPLNS---------ERAFVQFSKREEAEAALKSPDA-VMGNRFI 242 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~---~~FskfG~I~~v~v~~dk---------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~I 242 (634)
.++|||+|||++ +++++|+ ++|++||.|.+|.|+.++ +||||+|.+.++|.+|++.|++ .|+||.|
T Consensus 15 ~~~l~V~nLp~~-~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 15 KNLVFVVGLSQR-LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp SSCEEEEEECTT-TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 579999999995 9999999 999999999999998765 5999999999999999999999 8999999
Q ss_pred EEEeecCCC
Q 048615 243 KLWWANRDS 251 (634)
Q Consensus 243 kV~wak~~~ 251 (634)
+|.|+++..
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998654
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.4e-14 Score=124.12 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++|| |..|+|+.++ +||||+|.+.++|.+|+ .|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFN-TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSCEEEEEESCCTT-CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34689999999995 99999999999997 9999999875 59999999999999999 8999 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9865543
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=123.48 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.| +++.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYS-ATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 44689999999995 9999999999999988 44443 57999999999999999999999 899999999999
Q ss_pred cCCCCC
Q 048615 248 NRDSIP 253 (634)
Q Consensus 248 k~~~~~ 253 (634)
++...+
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 104
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=126.28 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEE-EEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeE----E
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVV-DIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRF----I 242 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~-~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~----I 242 (634)
..++|||+|||++ +++++|+++|++||.|. .|+|++++ +||||+|.+.++|.+|++.|++ .|+|+. |
T Consensus 8 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPY-MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTT-CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999995 99999999999999999 99999875 6999999999999999999999 799999 9
Q ss_pred EEEeecCCCC
Q 048615 243 KLWWANRDSI 252 (634)
Q Consensus 243 kV~wak~~~~ 252 (634)
+|.|+++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999986654
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=121.75 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
.++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|+| .|+|+.|+|.|+
T Consensus 4 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRN-VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 579999999995 999999999999999999998763 47999999999999999999999 899999999999
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
++..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 106
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=1e-14 Score=127.79 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-cc---CCeEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VM---GNRFIK 243 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l---~gR~Ik 243 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .+ +|+.|+
T Consensus 11 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRN-LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34689999999995 999999999999999999999885 36999999999999999999999 66 889999
Q ss_pred EEeecCCCCC
Q 048615 244 LWWANRDSIP 253 (634)
Q Consensus 244 V~wak~~~~~ 253 (634)
|.|+++....
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999866543
No 107
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=123.37 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
.+.++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLY-TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSS-CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44689999999995 9999999999999999999998764 5999999999999999999999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 973
No 108
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4e-14 Score=125.66 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+..++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYK-VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 44689999999995 999999999999999999999987 46999999999999999999999 899999999999
Q ss_pred cCCCC
Q 048615 248 NRDSI 252 (634)
Q Consensus 248 k~~~~ 252 (634)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75543
No 109
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=127.51 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=70.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|+.++ +||||+|.+.++|.+|+..++| .|+|+.|+|.|
T Consensus 21 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEE-ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34689999999995 9999999999999999999998763 6999999999999999999999 89999999999
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
+++..
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97543
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=1.9e-14 Score=125.09 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=68.9
Q ss_pred CCCCEEEEeCCCC-CCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPL-KSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~-d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
+..++|||+|||+ + +++++|+.+|++||.|..|+|. ++||||+|.+.++|.+|+..++| .++|+.|+|.|++..
T Consensus 20 ~~~~~l~V~nLp~~~-~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKN-VSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CTTCEEEEESCCSSC-CCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCccc-CCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4578999999998 7 9999999999999999999985 79999999999999999999999 799999999999754
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=126.54 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhcc-CCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-c-cCCeEEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQK-FGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-V-MGNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~Fsk-fG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~-l~gR~IkV~ 245 (634)
.+.++|||+|||++ +++++|+++|++ ||.|..|+|+.+ ++||||+|.+.++|.+|++.|++ . |+|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPD-VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 44689999999995 999999999999 999999999987 47999999999999999999999 7 999999999
Q ss_pred eecCCCC
Q 048615 246 WANRDSI 252 (634)
Q Consensus 246 wak~~~~ 252 (634)
|+++...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9975543
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=127.58 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+.+|++||.|..|+|+.++ +||||+|.+.++|.+|+.. ++ .|+|+.|+|.|++
T Consensus 27 ~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFE-TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTC-CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 589999999995 9999999999999999999999863 6999999999999999999 88 8999999999998
Q ss_pred CCCCC
Q 048615 249 RDSIP 253 (634)
Q Consensus 249 ~~~~~ 253 (634)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 66543
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=1.7e-14 Score=127.36 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|+.++ +||||+|.+.++|.+|+..|+| .|+|+.|+|.|
T Consensus 24 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEE-AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34689999999995 9999999999999999999998763 7999999999999999999999 89999999999
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
+++..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97554
No 114
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=124.82 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|++.|++ .|+||.|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEAR-VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34689999999995 9999999999999999999999873 6999999999999999999999 899999999998
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 6
No 115
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=127.25 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=70.5
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++ .++|+.|+|.|+++...
T Consensus 1 ~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSS-CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999995 999999999999999999999997 89999999999999999999998 89999999999986653
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.6e-14 Score=124.36 Aligned_cols=78 Identities=27% Similarity=0.486 Sum_probs=70.6
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHH----HhhccCCCEEEEEEec---CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 173 QKALRTLFVNNVPLKSNRREALL----SHFQKFGEVVDIYIPL---NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~----~~FskfG~I~~v~v~~---dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
.++.++|||+|||++ +++++|+ .+|++||.|..|.|.. .++||||+|.+.++|.+|+..|+| .|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~-~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEK-IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTT-SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345789999999995 9999999 9999999999999873 468999999999999999999999 799999999
Q ss_pred EeecCCC
Q 048615 245 WWANRDS 251 (634)
Q Consensus 245 ~wak~~~ 251 (634)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998654
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.6e-15 Score=125.17 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC--ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGE-VVDIYIPLNSERAFVQFSKREEAEAALKSPDA--VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng--~l~gR~IkV~wak~~ 250 (634)
...++|||+|||++ +++++|+++|++||. |..+.+ ..++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+++.
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPA-VTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34689999999995 999999999999999 554544 5689999999999999999999998 599999999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 118
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=8.5e-15 Score=127.65 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCC--EEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-----ccCCe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGE--VVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-----VMGNR 240 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~--I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-----~l~gR 240 (634)
....||||+|||++ +|+++|+++|++||. |.+|+|++|+ |||||+|.+.++|.+|++.+++ .|+||
T Consensus 7 ~~m~tlfV~nL~~~-~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPH-TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCc-CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 44679999999995 999999999999995 6789998864 6999999999999999999988 38999
Q ss_pred EEEEEeec
Q 048615 241 FIKLWWAN 248 (634)
Q Consensus 241 ~IkV~wak 248 (634)
+|+|.||+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999997
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=126.33 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+.. ++ .|+|+.|+|.|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWS-TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSEECCBSCCTT-CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44689999999995 9999999999999999999999874 5999999999999999999 88 89999999999
Q ss_pred ecCCCCC
Q 048615 247 ANRDSIP 253 (634)
Q Consensus 247 ak~~~~~ 253 (634)
+++....
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9865543
No 120
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=2.4e-14 Score=121.23 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+ .+++ .|+|+.|+|.|++
T Consensus 6 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYG-ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTT-CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999995 999999999999999999999886 469999999999999999 9999 8999999999998
Q ss_pred CC
Q 048615 249 RD 250 (634)
Q Consensus 249 ~~ 250 (634)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 121
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.9e-14 Score=128.73 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=68.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|.+|++.|+| .|+||.|+|.|
T Consensus 38 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQE-FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTT-CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45789999999995 999999999999999999999876 46999999999999999999999 89999999999
Q ss_pred ec
Q 048615 247 AN 248 (634)
Q Consensus 247 ak 248 (634)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=2e-14 Score=127.67 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|. ++||||+|.+.++|.+|+..|+| .|+|+.|+|.|+++...
T Consensus 29 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 29 LSNTRLFVRPFPLD-VQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp CSCSEEEECSSCTT-CCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 44689999999995 9999999999999999999998 89999999999999999999999 89999999999986543
No 123
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=128.24 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..++| .|+|+.|+|.|++
T Consensus 27 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 27 SQPKRLHVSNIPFR-FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TCCCEEEEESCCTT-CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCc-CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 44689999999995 999999999999999999999887 57999999999999999999999 8999999999997
Q ss_pred CC
Q 048615 249 RD 250 (634)
Q Consensus 249 ~~ 250 (634)
+.
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 124
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=124.97 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--------EEEecCC------CeEEEEeCCHHHHHHHHHcCCC-cc
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--------IYIPLNS------ERAFVQFSKREEAEAALKSPDA-VM 237 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--------v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l 237 (634)
....++|||+|||++ +++++|+++|++||.|.. |+|+.++ |||||+|.+.++|.+|++.|+| .|
T Consensus 10 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGEN-VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSS-CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 355789999999995 999999999999999999 9998874 5999999999999999999999 89
Q ss_pred CCeEEEEEeec
Q 048615 238 GNRFIKLWWAN 248 (634)
Q Consensus 238 ~gR~IkV~wak 248 (634)
+||.|+|.||+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999984
No 125
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=125.35 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCC-EEEEEEe-------cCCCeEEEEeCCHHHHHHHHHcCC--C-ccCCeEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGE-VVDIYIP-------LNSERAFVQFSKREEAEAALKSPD--A-VMGNRFI 242 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~-I~~v~v~-------~dkg~AFV~F~s~e~A~~Ai~~ln--g-~l~gR~I 242 (634)
...++|||+|||++ +++++|+++|++||. |.+|.|+ ..++||||+|.+.++|.+|+..|+ + .|+||.|
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKM-KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTT-SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCc-CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 34689999999995 999999999999998 9999998 345799999999999999999996 4 7999999
Q ss_pred EEEeecCCCC
Q 048615 243 KLWWANRDSI 252 (634)
Q Consensus 243 kV~wak~~~~ 252 (634)
+|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986554
No 126
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=4.5e-14 Score=119.31 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|++.++..|+||.|+|.||
T Consensus 9 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWD-TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34689999999995 9999999999999999999998874 5999999999999999987544899999999986
No 127
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3.5e-14 Score=124.62 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
.+.++|||+|||+. +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|++ .|+|+.|+|.|+
T Consensus 27 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45789999999995 999999999999999999999976 46999999999999999999999 899999999998
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=126.79 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+.+|++||.|..|+|+.++ +||||+|.+.++|.+|++.++| .|+||.|+|.|
T Consensus 24 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFN-ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSS-CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34689999999995 9999999999999999999998763 6999999999999999999999 89999999999
Q ss_pred ecCC
Q 048615 247 ANRD 250 (634)
Q Consensus 247 ak~~ 250 (634)
+++.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9754
No 129
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=1.4e-14 Score=158.75 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||+. +++++|..+|++||.|..|.|+.+ ++||||+|.+.++|.+||..|+| .|+|+.|+|.|+
T Consensus 101 ~~~~lfV~nL~~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYD-TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3589999999995 999999999999999999999876 47999999999999999999999 899999999999
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
++..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=122.08 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|+| .|+||.|+|.|.
T Consensus 4 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPG-TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTT-CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3689999999995 999999999999999999999887 46999999999999999999999 899999999886
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.7e-14 Score=129.43 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHH----HhhccCCCEEEEEEec---CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALL----SHFQKFGEVVDIYIPL---NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~----~~FskfG~I~~v~v~~---dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
.++++|||+|||+. +++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|..|+..|+| .|.||.|+|.
T Consensus 27 ~p~~~LfV~nL~~~-~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPE-VPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTT-SCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 34689999999995 9999876 6999999999999865 368999999999999999999999 8999999999
Q ss_pred eecCC
Q 048615 246 WANRD 250 (634)
Q Consensus 246 wak~~ 250 (634)
|++..
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99754
No 132
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=118.45 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=68.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++| .|..|+|+.+ ++||||+|.+.++|.+|+. +++ .|+||.|+|.|+
T Consensus 8 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN-VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSS-CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCC-CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 34689999999995 9999999999999 9999999886 3699999999999999999 999 899999999999
Q ss_pred cCC
Q 048615 248 NRD 250 (634)
Q Consensus 248 k~~ 250 (634)
++.
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 755
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-14 Score=126.94 Aligned_cols=75 Identities=24% Similarity=0.445 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+.+|++||.|..|.|+.+ ++||||+|.+.++|.+|++.++| .|+|+.|+|.|++
T Consensus 8 ~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYE-ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTT-SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCc-CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 589999999995 999999999999999999999876 36999999999999999999999 8999999999997
Q ss_pred CCC
Q 048615 249 RDS 251 (634)
Q Consensus 249 ~~~ 251 (634)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 554
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=3.2e-14 Score=127.63 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCC-CEEEEEEec--CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFG-EVVDIYIPL--NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG-~I~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
..++|||+|||++ +++++|+++|++|| .|..|.|.. .+|||||+|.+.++|++|++.|+| .|+||.|+|.|++.
T Consensus 27 ~~~~l~VgnLp~~-~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEG-CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCC-CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3579999999996 99999999999999 999999863 468999999999999999999999 89999999999863
No 135
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=3.4e-14 Score=130.30 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
.+.++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|++ .|+|+.|+|.|
T Consensus 44 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLY-TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTS-CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44689999999995 999999999999999999999875 36999999999999999999999 89999999999
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
+++.+
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98654
No 136
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=120.60 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=66.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|+.|+. |.++.++ +||||+|.+.++|.+|++.|++ .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSED-TTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTT-CCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCc-cCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999995 999999999999864 5555543 6999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 048615 247 ANRDSIPD 254 (634)
Q Consensus 247 ak~~~~~~ 254 (634)
+++....+
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 98766543
No 137
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=5.8e-14 Score=119.44 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
..++|||+|||++ +++++|+++|++| .|.+|+|...++||||+|.+.++|.+|++.++| .++||.|+|.|+..+.
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQD-SNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSS-CCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 3689999999995 9999999999999 999999988889999999999999999999999 8999999999996543
No 138
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=1e-13 Score=123.06 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeec
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWAN 248 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak 248 (634)
..++|||+|||++ +++++|+.+|++||.|..|+|+.++ +||||+|.+.++|.+|+..++..|+||.|+|.|+.
T Consensus 24 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQ-TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 4689999999995 9999999999999999999998863 69999999999999999998658999999999997
Q ss_pred CCC
Q 048615 249 RDS 251 (634)
Q Consensus 249 ~~~ 251 (634)
+..
T Consensus 103 ~~~ 105 (109)
T 2rs2_A 103 PRR 105 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-13 Score=118.45 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+.. + .|+|+.|+|.|
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLPWK-TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEESCCSS-CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEEC
T ss_pred CCCCEEEEEcCCCc-CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEe
Confidence 34689999999995 9999999999999999999999874 5999999999999999995 5 79999999999
Q ss_pred ecCCCC
Q 048615 247 ANRDSI 252 (634)
Q Consensus 247 ak~~~~ 252 (634)
+++...
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 986544
No 140
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=1.6e-14 Score=126.28 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=68.2
Q ss_pred CCEEEEeCCCC------CCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCC-eE
Q 048615 176 LRTLFVNNVPL------KSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGN-RF 241 (634)
Q Consensus 176 ~~tLfVgnLp~------d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~g-R~ 241 (634)
+++|||+|||+ + +++++|+++|++||.|.+|+|+.++ |||||+|.+.++|.+|++.|+| .|+| |.
T Consensus 6 ~~~vfV~nLp~v~~~~~~-~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVP-VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHH-HHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHH-HHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 57999999999 8 8999999999999999999998754 7999999999999999999999 8998 99
Q ss_pred EEEEeecC
Q 048615 242 IKLWWANR 249 (634)
Q Consensus 242 IkV~wak~ 249 (634)
|+|.|+++
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999964
No 141
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=6.3e-14 Score=126.39 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|.+|+ .++| .|+|+.|+|.|++
T Consensus 36 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYG-STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTT-CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 479999999995 999999999999999999999876 469999999999999999 8999 8999999999998
Q ss_pred CCCC
Q 048615 249 RDSI 252 (634)
Q Consensus 249 ~~~~ 252 (634)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5543
No 142
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=7.2e-14 Score=124.34 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC---CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN---SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d---kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
...++|||+|||++ +++++|+.+|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|+| .++|+.|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYK-ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 34689999999995 999999999999999999999875 47999999999999999999999 89999999999963
No 143
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=124.82 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|+..+++ .|+|+.|+|.|+
T Consensus 33 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45689999999995 999999999999999999999885 47999999999999999999999 899999999999
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7544
No 144
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=121.90 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||. ++|+|+.++ +||||+|.+.++|.+||+ +++ .|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYR-ATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTT-CCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 34689999999995 999999999999995 499998764 599999999999999995 688 899999999999
Q ss_pred cCCCC
Q 048615 248 NRDSI 252 (634)
Q Consensus 248 k~~~~ 252 (634)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 145
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.48 E-value=1.5e-13 Score=129.09 Aligned_cols=77 Identities=25% Similarity=0.420 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+||..|++ .|+|+.|+|.|+
T Consensus 38 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFY-TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999995 9999999999999999999998874 5999999999999999999999 899999999999
Q ss_pred cCCCC
Q 048615 248 NRDSI 252 (634)
Q Consensus 248 k~~~~ 252 (634)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86544
No 146
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.00 Aligned_cols=73 Identities=19% Similarity=0.368 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCCCC------CHHHHHHhhccCCCEEEEEEec----CCCeEEEEeCCHHHHHHHHHcCCC-ccCCe-EEE
Q 048615 176 LRTLFVNNVPLKSN------RREALLSHFQKFGEVVDIYIPL----NSERAFVQFSKREEAEAALKSPDA-VMGNR-FIK 243 (634)
Q Consensus 176 ~~tLfVgnLp~d~~------te~~L~~~FskfG~I~~v~v~~----dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR-~Ik 243 (634)
.++|||+|||+. + ++++|+.+|++||.|..|.|++ .+|||||+|.+.++|.+|+..|+| .|+|| .|+
T Consensus 15 ~~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 15 DSVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CSEEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCEEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 589999999995 8 7899999999999999999984 257999999999999999999999 89998 999
Q ss_pred EEeecC
Q 048615 244 LWWANR 249 (634)
Q Consensus 244 V~wak~ 249 (634)
|.|+..
T Consensus 94 V~~a~~ 99 (105)
T 2nlw_A 94 VNLFTD 99 (105)
T ss_dssp EECSCC
T ss_pred EEEcch
Confidence 999964
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-13 Score=119.70 Aligned_cols=76 Identities=26% Similarity=0.489 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE-EEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVD-IYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~-v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|.+ |+|+.+ +|||||+|.+.++|.+|+.. ++ .|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFG-CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34689999999995 999999999999999998 888765 47999999999999999998 77 89999999999
Q ss_pred ecCCC
Q 048615 247 ANRDS 251 (634)
Q Consensus 247 ak~~~ 251 (634)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 97543
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.2e-14 Score=125.61 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=69.2
Q ss_pred CCCCEEEE--eCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-cc-----CCeEEEEE
Q 048615 174 KALRTLFV--NNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VM-----GNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfV--gnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l-----~gR~IkV~ 245 (634)
.+.++||| +||+++ +++++|+++|++||.|.+|.|+.+++||||+|.+.++|.+|++.||| .| .|++|.|.
T Consensus 23 ~pt~~L~V~Ng~L~~~-~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNG-VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGT-CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCC-CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 34679999 779995 99999999999999999999999999999999999999999999999 66 68999999
Q ss_pred eecC
Q 048615 246 WANR 249 (634)
Q Consensus 246 wak~ 249 (634)
|++.
T Consensus 102 ~a~~ 105 (114)
T 2cq2_A 102 FVEK 105 (114)
T ss_dssp EESC
T ss_pred eccc
Confidence 9973
No 149
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=125.95 Aligned_cols=74 Identities=31% Similarity=0.469 Sum_probs=68.1
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
....++|||+|||++ +++++|+++|++||.|..|+|+.+ ++||||+|.+.++|.+|++.+++ .|+||.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTT-CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999995 999999999999999999999876 47999999999999999999999 8999999999
Q ss_pred ee
Q 048615 246 WA 247 (634)
Q Consensus 246 wa 247 (634)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 150
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.3e-14 Score=118.55 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecCCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDSI 252 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~~~~ 252 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|+.. .-.++|+.|+|.|+++...
T Consensus 5 ~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 5 SSGVFVGRCTGD-MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCEEEEESCCSS-SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCC
T ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCCC
Confidence 589999999995 999999999999999999999876 78999999999999865322 1157999999999986554
No 151
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4e-14 Score=122.29 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..+.++.+ ++||||+|.+.++|.+|++.|++ .|+||.|+|.|
T Consensus 13 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFT-VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTT-CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34689999999995 999999999999999987776654 36999999999999999999999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
++.
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 873
No 152
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=123.76 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|+. +++ .|+||.|+|.|++
T Consensus 11 ~~~lfV~~Lp~~-~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTT-CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCEEEEECCCCC-CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 579999999996 999999999999999999999985 4799999999999999999 788 8999999999985
No 153
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.47 E-value=1.7e-14 Score=123.33 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=64.0
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCC--CEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFG--EVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG--~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
.+|||+|||++ +++++|+++|++|| .|.+|+|+.++ |||||+|.+.++|.+|++.|+| .|+||.|+|.|+
T Consensus 2 ~~l~V~nL~~~-~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWW-TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTT-CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCC-CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 48999999995 99999999999999 99999998874 5999999999999999999999 899999999999
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7543
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-15 Score=133.41 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--------EEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--------IYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGN 239 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--------v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~g 239 (634)
+.++|||+|||++ +++++|+++|++||.|.. |+|+.+ ++||||+|.+.++|.+|+..|++ .|+|
T Consensus 6 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGEN-VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 3689999999995 999999999999999998 888876 36999999999999999999999 8999
Q ss_pred eEEEEEeecCCCCCC
Q 048615 240 RFIKLWWANRDSIPD 254 (634)
Q Consensus 240 R~IkV~wak~~~~~~ 254 (634)
+.|+|.|+++.....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999998765543
No 155
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=123.11 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCE----EEEEEec--CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEV----VDIYIPL--NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I----~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+.++|||+|||++ +++++|+++|++||.| ..+++.. .++||||+|.+.++|.+|+..|++ .|+|+.|+|.|+
T Consensus 24 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTT-CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4689999999995 9999999999999998 5666653 358999999999999999999999 899999999999
Q ss_pred cCCCCC
Q 048615 248 NRDSIP 253 (634)
Q Consensus 248 k~~~~~ 253 (634)
++....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 866543
No 156
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=5.3e-14 Score=122.64 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
...++|||+|||++ +++++|+++|++|| |.+|+|+.++ |||||+|.+.++|.+|+ .++| .|+||.|+|.
T Consensus 17 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYD-VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSC-CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34689999999995 99999999999999 9999998764 69999999999999999 8999 8999999999
Q ss_pred eecCC
Q 048615 246 WANRD 250 (634)
Q Consensus 246 wak~~ 250 (634)
|+++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99754
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=116.78 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCC-eEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE-RAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg-~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
..++|||+|||++ +++++|+.+|++||.|.+|.+....+ ||||+|.+.++|.+|+. +++ .|+||.|+|.|+.+..
T Consensus 7 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRG-VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTT-CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 3579999999995 99999999999999999983333222 99999999999999999 999 8999999999986443
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=119.57 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec--CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
...++|||+|||++ +++++|+.+|++||.|. +.++. .++||||+|.+.++|.+|++.|+| .|+|+.|+|.|+++.
T Consensus 17 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRD-ARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCc-CcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34689999999995 99999999999999996 55554 468999999999999999999999 899999999999865
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
+
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=7.9e-14 Score=124.96 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeE-----EEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRF-----IKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~-----IkV~wa 247 (634)
...++|||+|||++ +++++|+++|++||.|..|.|+.+ +||||+|.+.++|.+||+.|++ .|+|+. |+|.++
T Consensus 14 r~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPS-GSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSS-CCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 34689999999995 999999999999999999999888 9999999999999999999999 899988 777777
Q ss_pred cCCC
Q 048615 248 NRDS 251 (634)
Q Consensus 248 k~~~ 251 (634)
.+..
T Consensus 92 ~~~~ 95 (115)
T 3beg_B 92 GPRS 95 (115)
T ss_dssp C---
T ss_pred CCCC
Confidence 6543
No 160
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.1e-14 Score=125.91 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.++|||+|||++ +++++|+++|++||.|..|+|+.++ +||||+|.+.++|.+|+ .+++ .|+|+.|+|.|++
T Consensus 25 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAAR-IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 579999999995 9999999999999999999998653 69999999999999999 9999 8999999999997
Q ss_pred CC
Q 048615 249 RD 250 (634)
Q Consensus 249 ~~ 250 (634)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 161
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=6.2e-14 Score=115.44 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=65.7
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
++|||+|||++ +++++|+++|++||.|..|.++.++ +||||+|.+.++|.+|+..++..++||.|+|.||
T Consensus 1 ~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQ-TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSS-CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 58999999995 9999999999999999999998864 6999999999999999999997799999999997
No 162
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=121.53 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-cc--------CC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VM--------GN 239 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l--------~g 239 (634)
...++|||+|||++ +++++|+.+|++||.|..|+|+.+ ++||||+|.+.++|.+|+..|+| .| .+
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLS-MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 44689999999995 999999999999999999999987 36999999999999999999999 67 58
Q ss_pred eEEEEEeecC
Q 048615 240 RFIKLWWANR 249 (634)
Q Consensus 240 R~IkV~wak~ 249 (634)
++|+|.|+++
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999974
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=117.86 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEE-EecCCC--eEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIY-IPLNSE--RAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRD 250 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~-v~~dkg--~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~ 250 (634)
..++|||+|||++ +++++|+.+|++||.|..|+ |+.++. .|||+|.+.++|.+|+..|+| .|+||.|+|.|+++.
T Consensus 14 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPH-LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSS-SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCC-CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3689999999995 99999999999999999994 777754 599999999999999999999 899999999999855
No 164
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=9e-14 Score=127.21 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--EEEecCC------CeEEEEeCCHHHHHHHHHcCCC-----ccCCe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--IYIPLNS------ERAFVQFSKREEAEAALKSPDA-----VMGNR 240 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-----~l~gR 240 (634)
...++|||+|||++ +++++|+++|++||.|.. |+|++++ |||||+|.+. +|.+|+..|++ .|+||
T Consensus 21 ~~~~~lfV~nL~~~-~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPH-STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTT-CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 34689999999995 999999999999999976 9998875 7999999999 99999999998 69999
Q ss_pred EEEEEeecCCCC
Q 048615 241 FIKLWWANRDSI 252 (634)
Q Consensus 241 ~IkV~wak~~~~ 252 (634)
.|+|.|+++...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999986544
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.44 E-value=7.1e-14 Score=114.80 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=63.4
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
+|||+|||++ +++++|+++|++||.|..|.++.++ +||||+|.+.++|.+|++ +++ .|+|+.|+|.||
T Consensus 1 ~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVN-TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSS-CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999995 9999999999999999999998764 699999999999999998 888 899999999986
No 166
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=2.9e-14 Score=121.23 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=65.4
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
++|||+|||++ +++++|+++|++||.|.+|+|+.+ ++||||+|.+.+ |.+|+..++| .++|+.|+|.||.+
T Consensus 2 ~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYS-ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTT-SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999995 999999999999999999999876 469999999999 9999999999 89999999999975
Q ss_pred CC
Q 048615 250 DS 251 (634)
Q Consensus 250 ~~ 251 (634)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 167
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=129.71 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCC--CEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFG--EVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG--~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
.++|||+|||++ +++++|+++|++|| .|..|+|+.++ |||||+|.+.++|.+||..|+| .|+||.|+|.|
T Consensus 55 ~~~lfVgnLp~~-~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWW-TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTT-CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 579999999995 99999999999999 99999999874 5999999999999999999999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
+++
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 168
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=115.45 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=61.9
Q ss_pred CEEEEeCCCCCCC------CHHHHHHhhccCCCEEEEEEecC----CCeEEEEeCCHHHHHHHHHcCCC-ccCCe-EEEE
Q 048615 177 RTLFVNNVPLKSN------RREALLSHFQKFGEVVDIYIPLN----SERAFVQFSKREEAEAALKSPDA-VMGNR-FIKL 244 (634)
Q Consensus 177 ~tLfVgnLp~d~~------te~~L~~~FskfG~I~~v~v~~d----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR-~IkV 244 (634)
++|||+|||+. + ++++|+.+|++||.|.+|.|++. ++||||+|.+.++|.+|+..|+| .|+|| .|+|
T Consensus 2 ~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 69999999995 8 67999999999999999998843 58999999999999999999999 89999 8876
Q ss_pred E
Q 048615 245 W 245 (634)
Q Consensus 245 ~ 245 (634)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=5e-14 Score=131.30 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=67.1
Q ss_pred ceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHH
Q 048615 116 SLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREAL 194 (634)
Q Consensus 116 GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L 194 (634)
|+||.+|.-++.+ .++..|... ..|...--.. ++.. ........++|||+|||++ +++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~-------------g~~~---~~~~~~~~~~lfV~nLp~~-~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS-------------GDSE---FTVQSTTGHCVHMRGLPYK-ATENDI 63 (139)
T ss_dssp ------------------------------------------------------------CCCCEECCSCCTT-CCHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC-------------CCcc---cCCCCCCCCEEEEeCCCCC-CCHHHH
Confidence 7899999998887 676665543 2232221000 0000 0011223579999999996 999999
Q ss_pred HHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCCC
Q 048615 195 LSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDSI 252 (634)
Q Consensus 195 ~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~~ 252 (634)
+++|++|| |++|+|+.+ ++||||+|.+.++|.+|| .+++ .|+||.|+|.++.+...
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99999999 779999876 469999999999999999 7788 89999999999976543
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=2.5e-13 Score=114.40 Aligned_cols=69 Identities=26% Similarity=0.484 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccC----C-------CEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKF----G-------EVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fskf----G-------~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
.++|||+|||++ +++++|+++|++| | .|.+|++..+++||||+|.+.++|.+|+ .+++ .|+||.|+
T Consensus 6 ~~~l~V~nLp~~-~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 6 ARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGEEEEESCCTT-CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 589999999995 9999999999999 8 9999999999999999999999999999 9999 89999999
Q ss_pred EEe
Q 048615 244 LWW 246 (634)
Q Consensus 244 V~w 246 (634)
|..
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 973
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=3.9e-13 Score=122.93 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=66.8
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCe-EEEEeCCHHHHHHHHHcCCC-ccCC--eEEEEEeecCCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSER-AFVQFSKREEAEAALKSPDA-VMGN--RFIKLWWANRDS 251 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~-AFV~F~s~e~A~~Ai~~lng-~l~g--R~IkV~wak~~~ 251 (634)
..|||+||++. +++++|+.+|++||.|.+|+|+...|| |||+|.+.++|..|++.|+| .|.| +.|+|.|+++..
T Consensus 26 l~l~V~NL~~~-vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYP-ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSC-CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 35789999995 999999999999999999999776686 99999999999999999999 6776 799999998654
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=2.3e-13 Score=123.40 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
...++|||+|+ + +++++|+.+|++||.|.+|.|...++||||+|.+.++|.+|+..|+| .|+|+.|+|.|+++..
T Consensus 37 ~~~~~lfVgnl--~-~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--D-MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--S-CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--C-CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 34789999995 4 89999999999999999999998899999999999999999999999 8999999999998654
No 173
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=1.3e-13 Score=139.55 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCCCC---------CHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-cc------
Q 048615 174 KALRTLFVNNVPLKSN---------RREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VM------ 237 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~---------te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l------ 237 (634)
+.+++|||+||+.+ + ++++|+.+|++||.|.+|+|+.+++||||+|.+.++|+.|++.|+| .|
T Consensus 132 ~~~rtLfVgnL~~~-~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 132 KKNKTLYVGGIDGA-LNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCEEEEECTTGG-GTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred cCCceeecCCCChh-hhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 45789999999995 7 6999999999999999999999999999999999999999999999 67
Q ss_pred ------CCeEEEEEeecCCCC
Q 048615 238 ------GNRFIKLWWANRDSI 252 (634)
Q Consensus 238 ------~gR~IkV~wak~~~~ 252 (634)
.|+.|.|.||+.+..
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 174
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=8e-14 Score=119.55 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+++|++||.|..+.++.+ ++||||+|.+.++|.+|++.|++ .|+||.|+|.|+
T Consensus 14 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFT-VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTT-CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3589999999995 999999999999999988777763 36999999999999999999999 899999999998
Q ss_pred c
Q 048615 248 N 248 (634)
Q Consensus 248 k 248 (634)
+
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 6
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=4.5e-13 Score=114.81 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecCC
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRD 250 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~~ 250 (634)
.+.++|||+|||++ +++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.++.. ..-.+.|+.|+|.|+++.
T Consensus 9 ~~~~~l~V~~Lp~~-~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTED-MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCCC
Confidence 34689999999996 999999999999999999999886 7899999999999984321 111467999999999754
No 176
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.6e-13 Score=119.56 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCE-EEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEV-VDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I-~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+++|++||.| ..|+|+.+ ++||||+|.+.++|.+||.. ++ .|+||.|+|.|+
T Consensus 14 ~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFS-ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTT-SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCc-CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 4689999999995 9999999999999999 88988875 47999999999999999998 88 899999999999
Q ss_pred cCC
Q 048615 248 NRD 250 (634)
Q Consensus 248 k~~ 250 (634)
.+.
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=4.3e-13 Score=128.19 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC--CCeEEEEeCCHHHHHHHHHcCCC-ccCC--eEEEEEeecCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN--SERAFVQFSKREEAEAALKSPDA-VMGN--RFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d--kg~AFV~F~s~e~A~~Ai~~lng-~l~g--R~IkV~wak~~ 250 (634)
..+|||+||++. +++++|+++|++||.|.+|.|... ++||||+|.+.++|.+|++.|+| .|.| +.|+|.|+++.
T Consensus 46 vl~l~VgNL~~~-vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSC-CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 468999999995 999999999999999999999754 46999999999999999999999 6754 99999999875
Q ss_pred C
Q 048615 251 S 251 (634)
Q Consensus 251 ~ 251 (634)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 178
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=2.5e-13 Score=116.80 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec--CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecCCC
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANRDS 251 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~~~ 251 (634)
..++|||+|||++ +++++|+.+|++||.|..+ ... .++||||+|.+.++|.+|+..++| .|+|+.|+|.|+++..
T Consensus 15 ~~~~l~V~nL~~~-~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 15 AARTLLAKNLSFN-ITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GGGEEEEESCCSS-CCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4689999999995 9999999999999998777 221 247999999999999999999999 8999999999997654
Q ss_pred C
Q 048615 252 I 252 (634)
Q Consensus 252 ~ 252 (634)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 179
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=4e-13 Score=121.02 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCC---EEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGE---VVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~---I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
...++|||+|||++ +++++|+++|++||. |..|+|+.++ +||||+|.+.++|.+|++ +++ .|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWS-CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34689999999995 999999999999999 8999998763 699999999999999999 898 899999999
Q ss_pred EeecC
Q 048615 245 WWANR 249 (634)
Q Consensus 245 ~wak~ 249 (634)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99954
No 180
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1e-13 Score=120.60 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEec------CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPL------NSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~------dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+.+|++||.|.. .++. .++||||+|.+.++|.+|++ |++ .|+||.|+|.|+
T Consensus 16 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPN-KSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTT-SCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 4689999999995 999999999999998766 3333 36899999999999999999 999 899999999999
Q ss_pred cCCCC
Q 048615 248 NRDSI 252 (634)
Q Consensus 248 k~~~~ 252 (634)
++...
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 85543
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=7.7e-13 Score=121.89 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-CCe-EEEEeCCHHHHHHHHHcCCC-ccCC--eEEEEEeecCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-SER-AFVQFSKREEAEAALKSPDA-VMGN--RFIKLWWANRD 250 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-kg~-AFV~F~s~e~A~~Ai~~lng-~l~g--R~IkV~wak~~ 250 (634)
-..|||+||++. +++++|+++|++||.|.+|.|+.. ++| |||+|.+.++|.+|++.|+| .|.| +.|+|.|+++.
T Consensus 28 VL~I~V~NL~~~-vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESCCSC-CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCCCCC-CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 357889999995 999999999999999999998764 467 99999999999999999999 6777 99999999865
Q ss_pred CC
Q 048615 251 SI 252 (634)
Q Consensus 251 ~~ 252 (634)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=116.15 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCCCCCHHH----HHHhhccC-CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREA----LLSHFQKF-GEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~----L~~~Fskf-G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.+.|||+|||+. +++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++.|+| .|.||+|+|.||+.
T Consensus 9 ~T~lYV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTT-SCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 344999999995 99888 55899999 5999983 39999999999999999999999 89999999999985
Q ss_pred CC
Q 048615 250 DS 251 (634)
Q Consensus 250 ~~ 251 (634)
.+
T Consensus 84 ~s 85 (96)
T 2diu_A 84 NR 85 (96)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 183
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.38 E-value=1.4e-13 Score=123.21 Aligned_cols=100 Identities=12% Similarity=0.223 Sum_probs=59.6
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCCCCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNMDPSTK 159 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~~~~~~ 159 (634)
+....+++.+..+|.++|.|..++++.++ ++++|||||+|.+.++| +||..|||..|+||+|+|.++.++.......
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~ 90 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 90 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-----
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccccc
Confidence 34456778888888888888777777664 24689999999999999 9999999999999999999987654211100
Q ss_pred cccccccccCCCCCCCCCEEEEeCCCCCCCCHHH
Q 048615 160 AQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREA 193 (634)
Q Consensus 160 ~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~ 193 (634)
. ......++|||+|||++ +|++.
T Consensus 91 --~--------~~~~~~~~lyv~Nl~~~-~T~~a 113 (115)
T 4f25_A 91 --G--------ARAKEFTNVYIKNFGPG-STRAA 113 (115)
T ss_dssp ----------------------------------
T ss_pred --c--------cccCCCCceEeCCCCCC-ccccc
Confidence 0 01123468999999995 77653
No 184
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=5.9e-13 Score=123.57 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCC---EEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGE---VVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~---I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
...++|||+|||++ +++++|+++|++||. |..|+|+.++ |||||+|.+.++|.+|++ +++ .|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~-~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS-CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTT-CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34689999999995 999999999999999 8899998764 699999999999999999 999 899999999
Q ss_pred Eeec
Q 048615 245 WWAN 248 (634)
Q Consensus 245 ~wak 248 (634)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9985
No 185
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.2e-13 Score=121.46 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=65.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
...++|||+|||++ +++++|+++|++||.|..+.++.+ ++||||+|.+.++|.+||. +++ .|+||.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFE-AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44689999999995 999999999999999987444432 3699999999999999999 999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 964
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.36 E-value=2.6e-13 Score=111.30 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=62.7
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC------CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN------SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d------kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
+|||+|||++ +++++|+++|++||.|.+|.++.+ ++||||+|.+.++|.+|++..+..++|+.|+|.||
T Consensus 1 ~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPD-TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSS-CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5999999995 999999999999999999999875 46999999999999999997333899999999986
No 187
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.35 E-value=9e-13 Score=132.38 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCC--CEEEEEEecCC------CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFG--EVVDIYIPLNS------ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG--~I~~v~v~~dk------g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
.++|||+|||++ +++++|+++|++|| .|.+|+|+.++ +||||+|.+.++|.+||+.|++ .|+||.|+|.|
T Consensus 68 ~~~lfVgnL~~~-~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 68 RIALYIGNLTWW-TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp -CEEEEESCCTT-CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred ccEEEEeCCCCC-CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 579999999995 99999999999999 99999999874 5999999999999999999999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 188
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.6e-12 Score=125.57 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 173 QKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 173 ~~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
....++|||+|||++ +++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.+++ .|+|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSC-CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999995 999999999999999999999875 47999999999999999999999 89999999999
Q ss_pred ecC
Q 048615 247 ANR 249 (634)
Q Consensus 247 ak~ 249 (634)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 974
No 189
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=6e-13 Score=117.48 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCC---EEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGE---VVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~---I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
..++|||+|||++ +++++|+++|+.||. |..|+|+.++ |||||+|.+.++|.+|+. +++ .|+||.|+|.
T Consensus 10 ~~~~l~V~nLp~~-~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWS-CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSS-CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4689999999995 999999999999998 8999998763 699999999999999999 888 8999999999
Q ss_pred eecC
Q 048615 246 WANR 249 (634)
Q Consensus 246 wak~ 249 (634)
|+.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9864
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=3.4e-12 Score=124.87 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=85.1
Q ss_pred CHHHH-HHHhcc--CCceeCCEEEEEccCcccCCCCccccccccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHhhcc
Q 048615 124 TKEDR-EALPSL--QGSYRRGKRIIEGDAIQKNMDPSTKAQNDHMRNIRKPSQKALRTLFVNNVPLKSNRREALLSHFQK 200 (634)
Q Consensus 124 ~~e~A-~Ai~~m--nG~~l~GR~I~V~~a~~k~~~~~~~~~~d~~~~~~~~s~~~~~tLfVgnLp~d~~te~~L~~~Fsk 200 (634)
+.+.+ .|+... ....+.+...+|......+.+.. .+..+ .....++|||+|||++ +++++|+.+|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~----~~~~~-----~~~~~~~l~V~nLp~~-~t~~~L~~~F~~ 132 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEV----TDEYK-----NDVKNRSVYIKGFPTD-ATLDDIKEWLED 132 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCC----CHHHH-----HHHHHTEEEEECCCTT-CCHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCccc----chhhh-----hccccCEEEecCCCCc-CCHHHHHHHHhc
Confidence 45666 888887 55566555444443311111000 00000 0012479999999996 999999999999
Q ss_pred CCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecC
Q 048615 201 FGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANR 249 (634)
Q Consensus 201 fG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~ 249 (634)
||.|..|+|+++ +|||||+|.+.++|.+|+..++..++||.|+|.|++.
T Consensus 133 ~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 133 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp SCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred CCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 999999999875 3799999999999999999887799999999999864
No 191
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=6.3e-13 Score=123.02 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEE--------EEEec---CCCeEEEEeCCHHHHHHHHHcCCC-ccCCeE
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVD--------IYIPL---NSERAFVQFSKREEAEAALKSPDA-VMGNRF 241 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~--------v~v~~---dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~ 241 (634)
.+.++|||+|||++ +++++|+.+|++||.|.. |++.. .++||||+|.+.++|.+|+..|+| .|+||.
T Consensus 43 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKH-VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTT-CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34689999999995 999999999999998865 33332 357999999999999999999999 899999
Q ss_pred EEEEeecCCC
Q 048615 242 IKLWWANRDS 251 (634)
Q Consensus 242 IkV~wak~~~ 251 (634)
|+|.|++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997544
No 192
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=116.21 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.++|||+|||++ +++++|+++|++| .|..|+|+.+ +|||||+|.+.++|.+|| .+++ .|+||.|.|.++.+
T Consensus 16 ~~~v~V~nLp~~-~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFS-AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSS-CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCC-CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 479999999995 9999999999999 8999999875 479999999999999999 6888 89999999998853
No 193
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=1.1e-12 Score=114.28 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC-----CeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeecC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS-----ERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWANR 249 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk-----g~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak~ 249 (634)
.++|||+|||++ +++++|+.+|++||.|..|+|+.++ +||||+|.+.++|.+|+. ++ .|+|+.|.|.|+.+
T Consensus 9 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVR-MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 589999999995 9999999999999999999999863 799999999999999999 77 89999999999974
Q ss_pred C
Q 048615 250 D 250 (634)
Q Consensus 250 ~ 250 (634)
.
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.28 E-value=5e-12 Score=115.84 Aligned_cols=73 Identities=27% Similarity=0.521 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEE--EEEEecC-----CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEee
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVV--DIYIPLN-----SERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWA 247 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~--~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wa 247 (634)
..++|||+|||++ +++++|+++|++| .|+ .|+|+.+ +|||||+|.+.++|.+|++..+..|+||.|+|.++
T Consensus 41 ~~~~lfVgnLp~~-~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFG-CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTT-CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 3579999999995 9999999999999 677 8999876 47999999999999999996444899999999988
Q ss_pred cC
Q 048615 248 NR 249 (634)
Q Consensus 248 k~ 249 (634)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 195
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.7e-12 Score=111.95 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecC---------CCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLN---------SERAFVQFSKREEAEAALKSPDAVMGNRFIKLW 245 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~d---------kg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~ 245 (634)
..++|||+|||++ +++++|+++|++||.|. +.++.+ ++||||+|.+.++|.+|++.+++ ++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~-~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPD-IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE-EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTT-CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE-ETTEEEEEE
T ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh-cCCcEEEec
Confidence 4689999999995 99999999999999999 777653 57999999999999999999854 788888887
Q ss_pred eec
Q 048615 246 WAN 248 (634)
Q Consensus 246 wak 248 (634)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=4.6e-12 Score=115.58 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=64.6
Q ss_pred CCCEEEEeCCCCCCCCHHHHHHhhccCCCE----EEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 175 ALRTLFVNNVPLKSNRREALLSHFQKFGEV----VDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 175 ~~~tLfVgnLp~d~~te~~L~~~FskfG~I----~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
..++|||+|||++ +++++|+++|++||.| ..|+|+.+ +|||||+|.+.++|.+||+. ++ .|+||.|+|
T Consensus 22 ~~~~v~V~nLp~~-~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFT-ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTT-CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 3589999999995 9999999999999986 58888875 36999999999999999997 77 899999999
Q ss_pred Eeec
Q 048615 245 WWAN 248 (634)
Q Consensus 245 ~wak 248 (634)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9885
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.2e-11 Score=105.90 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCCCCC-----------HHHHHHhhccCCCEEEEEEec--CCCeEEEEeCCHHHHHHHHHcCCC-ccCC
Q 048615 174 KALRTLFVNNVPLKSNR-----------REALLSHFQKFGEVVDIYIPL--NSERAFVQFSKREEAEAALKSPDA-VMGN 239 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~t-----------e~~L~~~FskfG~I~~v~v~~--dkg~AFV~F~s~e~A~~Ai~~lng-~l~g 239 (634)
.+.++|+|.||... .. +++|+++|++||.|.+|.|.. .+|||||+|.+.++|.+|+..|+| .|+|
T Consensus 13 ~~s~~l~l~Nl~~~-~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHP-MDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCT-THHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCH-HHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34689999999442 22 579999999999999997642 258999999999999999999999 8999
Q ss_pred eEEEEEeecCCC
Q 048615 240 RFIKLWWANRDS 251 (634)
Q Consensus 240 R~IkV~wak~~~ 251 (634)
|.|+|.|+.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999997543
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=2.2e-11 Score=107.87 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCC--C--CCCHHHHHHhhccCCCEEEEEEecC-------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEE
Q 048615 175 ALRTLFVNNVPL--K--SNRREALLSHFQKFGEVVDIYIPLN-------SERAFVQFSKREEAEAALKSPDA-VMGNRFI 242 (634)
Q Consensus 175 ~~~tLfVgnLp~--d--~~te~~L~~~FskfG~I~~v~v~~d-------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~I 242 (634)
+.++|+|.||.. + .-.+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|+| .++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 368999999962 1 1268999999999999999999875 46999999999999999999999 8999999
Q ss_pred EEEeecC
Q 048615 243 KLWWANR 249 (634)
Q Consensus 243 kV~wak~ 249 (634)
+|.|+.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999964
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-10 Score=101.02 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=74.2
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .+ .++|||+|.++.+|++|+. +|.
T Consensus 10 ~~~~~~~~l~V-~nlp~~~t-~~~l~~~f~~~G~v~~v~i~~~~~--------~~-~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 10 ESKSTPKRLHV-SNIPFRFR-DPDLRQMFGQFGKILDVEIIFNER--------GS-KGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CCSCCCCEEEE-ESCCTTCC-HHHHHHHGGGTSCEEEEEEECCTT--------TT-CCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC--------CC-cEEEEEEECCHHHHHHHHHHhCCC
Confidence 45677899999 89999997 999999999999999999876531 12 2799999999999999995 799
Q ss_pred ccCCceeEEEEeCCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~~ 555 (634)
.|.|+.|++.|..+.....
T Consensus 79 ~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 79 VVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp EETTEECEEEECCSSCCCC
T ss_pred EECCEEEEEEEcccCCCCC
Confidence 9999999999998877654
No 200
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=5.6e-11 Score=99.55 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=68.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH---cCC
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL---SGK 536 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~---~g~ 536 (634)
-|...++|+| ++||..++ +++|+++|.+||+|.+|.+.... ++|||+|.++.+|++|+. +|.
T Consensus 8 ~~~~~~~l~V-~~l~~~~t-~~~l~~~f~~~G~i~~~~~~~~k-------------g~afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 8 EDKTITTLYV-GGLGDTIT-ETDLRNHFYQFGEIRTITVVQRQ-------------QCAFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp SCSSCCCEEE-ECCTTTSC-HHHHHHHHHTTSCEEEEEEEGGG-------------TEEEEEESSHHHHHHHHHTTTTTC
T ss_pred CCCCccEEEE-cCCCCCCC-HHHHHHHHHhCCCEeEEEEECCC-------------CEEEEEECCHHHHHHHHHHhcCCe
Confidence 4677899999 89999997 99999999999999999998765 799999999999999996 789
Q ss_pred ccCCceeEEEEeC
Q 048615 537 SWQGHDLQFTWLM 549 (634)
Q Consensus 537 ~~~g~~l~l~W~~ 549 (634)
.|.|+.|++.|.+
T Consensus 73 ~~~g~~l~v~~ak 85 (85)
T 2ytc_A 73 IVNGRRLNVKWGR 85 (85)
T ss_dssp EETTEECCEEECC
T ss_pred eECCCEEEEEecC
Confidence 9999999999964
No 201
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.19 E-value=4.9e-11 Score=104.12 Aligned_cols=80 Identities=28% Similarity=0.359 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..|+|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ...+ .++|||+|.++.+|++|+. +|..|.|
T Consensus 18 ~gt~lfV-~nLp~~~t-e~~L~~~F~~~G~I~~v~i~~d~~------tg~~-kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 18 QGTNLIV-NYLPQNMT-QDELRSLFSSIGEVESAKLIRDKV------AGHS-LGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCSEEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEEEEECSS------SCCE-EEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEeEeeecCC------CCcc-cccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3678999 89999998 999999999999999999875431 0011 2689999999999999984 6999999
Q ss_pred ceeEEEEeCCC
Q 048615 541 HDLQFTWLMPS 551 (634)
Q Consensus 541 ~~l~l~W~~~~ 551 (634)
+.|++.|.+|+
T Consensus 89 r~l~V~~AkPS 99 (99)
T 4fxv_A 89 KTIKVSYARPS 99 (99)
T ss_dssp EECEEEECCBC
T ss_pred EEEEEEEeeCC
Confidence 99999998763
No 202
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.6e-10 Score=101.68 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH----cCC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL----SGK 536 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~----~g~ 536 (634)
..-.++|+| ++||..++ +++|+++|.+||+|.+|.+...+ ++|||+|.++.+|++|+. ++.
T Consensus 12 ~~p~~~l~V-~nLp~~~t-e~~L~~~F~~fG~v~~v~i~~~k-------------g~aFVef~~~~~A~~Ai~~l~~~~~ 76 (101)
T 2cq1_A 12 GAPSRVLHI-RKLPGEVT-ETEVIALGLPFGKVTNILMLKGK-------------NQAFLELATEEAAITMVNYYSAVTP 76 (101)
T ss_dssp SSCCSEEEE-ESCCTTCC-HHHHHHTTTTTSCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEECCC-------------CEEEEEECCHHHHHHHHHHhccCCc
Confidence 344678999 89999997 99999999999999999987765 799999999999999986 367
Q ss_pred ccCCceeEEEEeCCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~~ 555 (634)
.|.|+.|.+.|..+.....
T Consensus 77 ~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 77 HLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp EETTEECEEEECSCSSCCC
T ss_pred eECCcEEEEEEcCcccCcC
Confidence 8999999999988776553
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-10 Score=101.75 Aligned_cols=63 Identities=24% Similarity=0.452 Sum_probs=56.1
Q ss_pred CCCHHHHHHhhccCCCEEEEEEec-CCCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeecCCC
Q 048615 188 SNRREALLSHFQKFGEVVDIYIPL-NSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWANRDS 251 (634)
Q Consensus 188 ~~te~~L~~~FskfG~I~~v~v~~-dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak~~~ 251 (634)
.+++++|+++|++||.|.+|+|+. .+|||||+|.+.++|..|++.+++ +.|++|+|.|+++..
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKISWLEGQP 91 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEEECSSCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEEEEccCCC
Confidence 389999999999999999999984 568999999999999999999655 578999999997554
No 204
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.3e-10 Score=99.48 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=74.2
Q ss_pred ccccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c
Q 048615 457 RYKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S 534 (634)
Q Consensus 457 ~~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~ 534 (634)
...-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .++ +++||+|.+..+|++|+. +
T Consensus 8 ~~~~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------~~~-g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 8 MMEDDGQPRTLYV-GNLSRDVT-EVLILQLFSQIGPCKSCKMITEHT--------SND-PYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CCCCSCCCCEEEE-ESCCTTCC-HHHHHHHHHHHSCEEEEEEECCCC--------SSC-CEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEE-eCCCccCC-HHHHHHHHHhcCCEeEEEEEecCC--------CCC-CEEEEEECCHHHHHHHHHHhC
Confidence 3456777899999 89999997 999999999999999999876531 122 799999999999999995 6
Q ss_pred CCccCCceeEEEEeCCCCCC
Q 048615 535 GKSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 535 g~~~~g~~l~l~W~~~~~~~ 554 (634)
|..|.|+.|++.|..+....
T Consensus 77 g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 77 GRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp TEEETTEEEEEEECCCTTCC
T ss_pred CCCcCCCeEEEEECCCCccc
Confidence 99999999999998886543
No 205
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=105.46 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=64.2
Q ss_pred CCccccccccccceeeec-ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhcc-CCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIG-SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSL-QGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig-~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~m-nG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.++.+|.++| .|..++.++++.++.++|||||+|.+.++| +||..| |+..++||+|+|.++.++.
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 555678899999999999 788888888888888999999999999999 999887 4678999999999998664
No 206
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=7.9e-11 Score=104.58 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=71.1
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c--C
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S--G 535 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~--g 535 (634)
.+...++|+| ++||..++ +++|+++|.+||+|.+|.+..++ ++|||+|.++.+|++|+. + |
T Consensus 12 ~~~~~~~LfV-~nLp~~vt-e~dL~~lF~~fG~V~~v~i~~~k-------------GfaFVeF~~~~~A~~Ai~~l~~~~ 76 (105)
T 1sjq_A 12 SGVPSRVIHI-RKLPIDVT-EGEVISLGLPFGKVTNLLMLKGK-------------NQAFIEMNTEEAANTMVNYYTSVT 76 (105)
T ss_dssp CCCCCCEEEE-CSCCTTSC-HHHHHHHHHHHCCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHHTTSC
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEcCC-------------CEEEEEECCHHHHHHHHHHhccCC
Confidence 4667899999 89999997 99999999999999999998765 799999999999999986 3 5
Q ss_pred CccCCceeEEEEeCCCCCC
Q 048615 536 KSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 536 ~~~~g~~l~l~W~~~~~~~ 554 (634)
..|.|+.|++.|.++....
T Consensus 77 ~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 77 PVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp CEETTEECCBCCCSSSSCC
T ss_pred ceECCEEEEEEEcCCCCCC
Confidence 7899999999998876554
No 207
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.8e-11 Score=109.44 Aligned_cols=71 Identities=10% Similarity=0.161 Sum_probs=63.0
Q ss_pred CEEEEeCC----CCCCCCHHHHHHhhccCCCEEEEEEecCC------CeEEEEeCC----HHH----HHHHHH--cCCC-
Q 048615 177 RTLFVNNV----PLKSNRREALLSHFQKFGEVVDIYIPLNS------ERAFVQFSK----REE----AEAALK--SPDA- 235 (634)
Q Consensus 177 ~tLfVgnL----p~d~~te~~L~~~FskfG~I~~v~v~~dk------g~AFV~F~s----~e~----A~~Ai~--~lng- 235 (634)
+.|||+|| |+. +++.+|+++|+.||+|.+|.++.|+ |||||+|.+ .++ |.+|+. .++|
T Consensus 3 ~kI~VgnL~~~~~~~-tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTN-IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCC-CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 994 9999999999999999999999986 699999996 333 899998 7899
Q ss_pred ccCCeEEEEEeec
Q 048615 236 VMGNRFIKLWWAN 248 (634)
Q Consensus 236 ~l~gR~IkV~wak 248 (634)
.|+||.|+|.+.+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 8999999999875
No 208
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=2.2e-10 Score=99.61 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=72.2
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+. ....++|||+|.+..+|++|+. +|.
T Consensus 10 ~~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~---------g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 10 ITRYQVVNLYV-KNLDDGID-DERLRKAFSPFGTITSAKVMMEG---------GRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CCCSSCCCEEE-ECCCTTCC-HHHHHHTTTTTSCEEEEEEEECS---------SSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEcCC---------CCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 34567899999 89999997 99999999999999999987531 0112699999999999999995 799
Q ss_pred ccCCceeEEEEeCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~ 554 (634)
.|.|+.|++.|..+....
T Consensus 79 ~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 79 IVATKPLYVALAQRKEER 96 (103)
T ss_dssp BSSSSBCEEEECSSCCCC
T ss_pred EeCCcEEEEEEecccccC
Confidence 999999999999887654
No 209
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=3.3e-10 Score=98.97 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=72.6
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCC-ccccCCCCCCCCCCceEEEEecChHHHHHHHH---cC
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDG-EVLEGDNGSDASKNCQVRVSFTTRRSAERAFL---SG 535 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~-~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~---~g 535 (634)
-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+ .. .....++|||+|.+..+|++|+. +|
T Consensus 11 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 11 KKQTTSKILV-RNIPFQAN-QREIRELFSTFGELKTVRLPKKMTG-------TGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp CSSCCCCEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEECCCCCSS-------SCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred cCCCCCEEEE-eCCCCcCC-HHHHHHHHHccCCeEEEEEecCCCC-------CCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 4667899999 89999997 9999999999999999998755 21 11112799999999999999985 79
Q ss_pred CccCCceeEEEEeCCCCCC
Q 048615 536 KSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 536 ~~~~g~~l~l~W~~~~~~~ 554 (634)
..|.|+.|++.|..+....
T Consensus 82 ~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 82 THLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CBSSSCBCEEEECCCCCCC
T ss_pred CeECCCEEEEEeCCCCCCC
Confidence 9999999999999887654
No 210
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=2.5e-10 Score=98.73 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
...+++|+| ++||..++ +++|+++|.+||+|..|.+.... ++|||+|.++.+|++|+. +|..|
T Consensus 12 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~~~~~k-------------g~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 12 FTQRSRLFV-GNLPPDIT-EEEMRKLFEKYGKAGEVFIHKDK-------------GFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCCTTEEEE-ESCCTTCC-HHHHHHHTSTTCCCSEEEEETTT-------------TEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHhhcCCeEEEEEecCC-------------CEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345689999 89999997 99999999999999999998665 799999999999999984 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 77 ~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 77 RGKQLRVRFACHSASL 92 (99)
T ss_dssp TTBCCEEEESSCCSCC
T ss_pred CCceEEEEEcCCCCCC
Confidence 9999999998876543
No 211
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=3.4e-10 Score=97.51 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
..+++|+| ++||..++ +++|+++|.+||+|.+|.+.... .+|||+|.+..+|++|+. +|..|.
T Consensus 15 ~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~v~~~~~~-------------g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 15 NPTTRLWV-GGLGPNTS-LAALAREFDRFGSIRTIDHVKGD-------------SFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCSCEEE-ECCCSSCC-HHHHHHHHHTTSCEEEEEECSSS-------------CCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeeEEEEeCCC-------------CEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34689999 89999997 99999999999999999998654 699999999999999986 699999
Q ss_pred --CceeEEEEeCCCCC
Q 048615 540 --GHDLQFTWLMPSSS 553 (634)
Q Consensus 540 --g~~l~l~W~~~~~~ 553 (634)
|+.|++.|..+..+
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 80 GPDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSSCBCEEEECCCCCC
T ss_pred CCCcEEEEEECCCCCC
Confidence 99999999988765
No 212
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=4.6e-10 Score=99.19 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c--CCccC
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S--GKSWQ 539 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~--g~~~~ 539 (634)
.++|+| ++||..++ +++|+++|.+||+|.+|.+...+ ++|||+|.+..+|++|+. + +..|.
T Consensus 15 ~~~l~V-~nLp~~~t-e~~L~~~F~~fG~V~~v~i~~~k-------------g~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 15 SPVVHV-RGLCESVV-EADLVEALEKFGTICYVMMMPFK-------------RQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CSEEEE-ESCCSSCC-HHHHHHHHTTTSCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCEEEE-eCCCCCCC-HHHHHHHHHhCCCEEEEEEECCC-------------CEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 578999 89999997 99999999999999999987655 799999999999999986 3 44689
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 80 GQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSBCEEEECSSSSCC
T ss_pred CEEEEEEEccCcccc
Confidence 999999998876543
No 213
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.13 E-value=4.1e-10 Score=99.92 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=72.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..
T Consensus 11 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 11 DTSNHFHVFV-GDLSPEIT-TEDIKAAFAPFGRISDARVVKDMA-------TGKSKGYGFVSFFNKWDAENAIQQMGGQW 81 (115)
T ss_dssp CSTTCEEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT-------TCCEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCcEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEEcCC-------CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4556889999 89999997 999999999999999999875431 01112699999999999999995 6999
Q ss_pred cCCceeEEEEeCCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~~ 555 (634)
|.|+.|++.|..+.....
T Consensus 82 ~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 82 LGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp ETTEECEEEESSCCCCCS
T ss_pred ECCEEEEEEEccCCCCCC
Confidence 999999999998877653
No 214
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.6e-10 Score=101.73 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=71.9
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+...++|+| ++||..++ +++|+++|.+||+|.+|.+.... ++|||+|.++.+|++|+. +|..
T Consensus 21 ~~~~~~~l~V-~nl~~~~t-~~~l~~~F~~~G~i~~v~i~~~~-------------g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 21 SSPKNCTVYC-GGIASGLT-DQLMRQTFSPFGQIMEIRVFPEK-------------GYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp SCSSCCEEEE-ECCSSCCC-HHHHHHHHHHHSCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCcEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeCCC-------------CEEEEEECCHHHHHHHHHHcCCCE
Confidence 3556789999 89999997 99999999999999999998765 799999999999999984 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|.++....
T Consensus 86 ~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 86 IEGHVVKCYWGKESPDM 102 (109)
T ss_dssp ETTEECEEECCCCCCSS
T ss_pred ECCcEEEEEecCCCCCC
Confidence 99999999999887654
No 215
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=5.2e-10 Score=97.51 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=72.8
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.+..+|++|+. +|.
T Consensus 10 ~~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 10 SERNQDATVYV-GGLDEKVS-EPLLWELFLQAGPVVNTHMPKDRV-------TGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCCCTTTEEEE-ECCCTTCC-HHHHHHHHHTTSCEEEEECCBCSS-------SCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred ccCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34566899999 89999997 999999999999999999876531 11112699999999999999996 699
Q ss_pred ccCCceeEEEEeCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~ 554 (634)
.|.|+.|++.|..+....
T Consensus 81 ~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 81 KLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp BCSSCBCEEEETTTTSCC
T ss_pred eECCeEEEEEECCCCCcC
Confidence 999999999998877654
No 216
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=106.73 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=66.0
Q ss_pred CCcccccCCCccccccccccceeeecc--eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCc----eeCCEEEE
Q 048615 73 NDLPVRNAGTAAVSQNTSMSVWGRIGS--SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGS----YRRGKRII 145 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~svfg~Ig~--V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~----~l~GR~I~ 145 (634)
+++.|+| +.+..+++.+..+|.++|. +..++.++++.++.++|||||+|.+.++| +||..|||. .++||+|+
T Consensus 10 ~tlfV~n-L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 10 DTIILRN-IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CEEEEES-CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred CEEEEeC-CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 4456666 6677888999999998884 55667788888888999999999999999 999999997 59999999
Q ss_pred EccCcc
Q 048615 146 EGDAIQ 151 (634)
Q Consensus 146 V~~a~~ 151 (634)
|.+|.+
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 217
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=5.4e-10 Score=96.47 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQ 539 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~ 539 (634)
+..+++|+| ++||..++ +++|+++|.+||+|..|.+..+.. ...+ .++|||+|.+..+|++|+. +|..|.
T Consensus 7 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~------~~~~-~g~afV~f~~~~~a~~A~~~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFV-GGIPHNCG-ETELREYFKKFGVVTEVVMIYDAE------KQRP-RGFGFITFEDEQSVDQAVNMHFHDIM 77 (99)
T ss_dssp CSSCCEEEE-ESCCSSCC-HHHHHHHHSSSSCEEEEEECCCTT------TCSC-CSEEEEEESSHHHHHHHHHHCCCBSS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEeCCC------CCCC-CceEEEEECCHHHHHHHHHhCCCEEC
Confidence 556789999 89999997 999999999999999999975431 0112 2799999999999999996 799999
Q ss_pred CceeEEEEeCCCCCCC
Q 048615 540 GHDLQFTWLMPSSSSN 555 (634)
Q Consensus 540 g~~l~l~W~~~~~~~~ 555 (634)
|+.|++.|..+.....
T Consensus 78 g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 78 GKKVEVKRAEPRDSKS 93 (99)
T ss_dssp SCBCEEEECCCCCCCC
T ss_pred CeEEEEEECCCCcccC
Confidence 9999999998877654
No 218
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.4e-10 Score=96.12 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH--HcCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF--LSGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~--~~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+. . +++||+|.+..+|++|+ ++|..|
T Consensus 5 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~~~--~-------------g~afV~f~~~~~A~~A~~~l~g~~~ 67 (90)
T 2dnq_A 5 SSGMVKLFI-GNLPREAT-EQEIRSLFEQYGKVLECDII--K-------------NYGFVHIEDKTAAEDAIRNLHHYKL 67 (90)
T ss_dssp SSCCEEEEE-ESCCSSCC-HHHHHHHHHTSSCEEEEEEE--T-------------TEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCeEEEE-eCCCCCCC-HHHHHHHHHhCCCEEEEEEE--C-------------CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 456789999 89999997 99999999999999999987 3 68999999999999998 469999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 68 ~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 68 HGVNINVEASKNKSKA 83 (90)
T ss_dssp SSCBCEEECSSCCCCC
T ss_pred CCcEEEEEECCCCCCC
Confidence 9999999999887664
No 219
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=107.58 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=65.6
Q ss_pred CcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 74 DLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 74 ~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
.+.|+| +....+++.+..+|.++|.|..+.++.++.++.++|||||+|.+.++| +||..|||+.|.||+|+|.++..+
T Consensus 8 ~lfV~n-L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 8 EVTFAR-LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEEEC-CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 334444 445567788888888888888888888888788899999999999999 999999999999999999988643
No 220
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.11 E-value=1.4e-10 Score=102.68 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=63.8
Q ss_pred CCEEEEeCC--CCCCCC-------HHHHHHhhccCCCEEEEEEecC--------CCeEEEEeCCHHHHHHHHHcCCC-cc
Q 048615 176 LRTLFVNNV--PLKSNR-------REALLSHFQKFGEVVDIYIPLN--------SERAFVQFSKREEAEAALKSPDA-VM 237 (634)
Q Consensus 176 ~~tLfVgnL--p~d~~t-------e~~L~~~FskfG~I~~v~v~~d--------kg~AFV~F~s~e~A~~Ai~~lng-~l 237 (634)
.+.|.|.|+ |.+..+ +++|++.|++||.|.+|.|+++ +|||||+|.+.++|.+|++.||| .+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 578999998 443222 3689999999999999999865 47999999999999999999999 89
Q ss_pred CCeEEEEEeecC
Q 048615 238 GNRFIKLWWANR 249 (634)
Q Consensus 238 ~gR~IkV~wak~ 249 (634)
+||.|+|.|+..
T Consensus 85 ~GR~i~v~~~~~ 96 (105)
T 3v4m_A 85 ANRVVVTKYCDP 96 (105)
T ss_dssp TTEECEEEEECH
T ss_pred CCCEEEEEEeCH
Confidence 999999999853
No 221
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=95.97 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=69.3
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
++++|+| ++||..++ +++|+++|.+||+|.+|.+..+... .....++|||+|.+..+|++|+. +|..|.|
T Consensus 3 ~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~~~i~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHI-GRLTRNVT-KDHIMEIFSTYGKIKMIDMPVERMH------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEE-ECCCTTCC-HHHHHHHHHTTSCEEEEECCEETTE------EEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHHhCCCEEEEEEEeCCCC------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 5789999 89999997 9999999999999999998654310 00012799999999999999986 7999999
Q ss_pred ceeEEEEeCCCCC
Q 048615 541 HDLQFTWLMPSSS 553 (634)
Q Consensus 541 ~~l~l~W~~~~~~ 553 (634)
+.|++.|..++.+
T Consensus 75 ~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 75 QEITATAVLAPWP 87 (88)
T ss_dssp EECEEEEECCCCC
T ss_pred eEEEEEECCCCCC
Confidence 9999999987654
No 222
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1.7e-10 Score=102.62 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=69.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.+...++|+| ++||..++ +++|+++|.+||.|.+|.+.... ++|||+|.++.+|++|+. +|..
T Consensus 6 ~~~~~~~l~V-~nLp~~~t-e~~L~~~F~~~G~i~~v~i~~~~-------------g~afV~f~~~~~A~~Ai~~l~g~~ 70 (111)
T 1whx_A 6 SGRSKTVILA-KNLPAGTL-AAEIQETFSRFGSLGRVLLPEGG-------------ITAIVEFLEPLEARKAFRHLAYSK 70 (111)
T ss_dssp TSEEEEEEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEECCSSS-------------SCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEeCCC-------------CEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3555789999 89999997 99999999999999999998655 799999999999999984 6999
Q ss_pred cCCceeEEEEeCCCC
Q 048615 538 WQGHDLQFTWLMPSS 552 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~ 552 (634)
|.|+.|.+.|.....
T Consensus 71 ~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 71 FHHVPLYLEWAPIGV 85 (111)
T ss_dssp SSSSBCEEEEEETTT
T ss_pred ECCeEEEEEECCCCc
Confidence 999999999987644
No 223
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.2e-10 Score=97.84 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=73.2
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcCCcc
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSW 538 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g~~~ 538 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+.++..|
T Consensus 10 ~~~~~~~~l~v-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~~~~~~~ 80 (103)
T 2cqg_A 10 RAVQKTSDLIV-LGLPWKTT-EQDLKEYFSTFGEVLMVQVKKDLK-------TGHSKGFGFVRFTEYETQVKVMSQRHMI 80 (103)
T ss_dssp CCCCCCCCEEE-ESCCSSCC-HHHHHHHHGGGSCEEEEEEEECSS-------SCSEEEEEEEEESSHHHHHHHHHSCEEE
T ss_pred CccCCCCEEEE-EcCCCcCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCCccceEEEEECCHHHHHHHHHcCCee
Confidence 45677899999 89999997 999999999999999999865431 0011268999999999999999999899
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|.+.|..+....
T Consensus 81 ~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 81 DGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp TTEEEEEECCCTTCCC
T ss_pred CCeEEEEEecCCCCcC
Confidence 9999999999887654
No 224
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.2e-10 Score=101.00 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
...++|+| ++||..++ +++|+++|.+||+|.+|.+.... ++|||+|.++.+|++|+. +|..|.
T Consensus 25 ~~~~~l~V-~nlp~~~~-~~~l~~~f~~~G~i~~~~~~~~~-------------g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 25 PRVTTAYI-GNIPHFAT-EADLIPLFQNFGFILDFKHYPEK-------------GCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SSCCEEEE-ESCCTTCC-HHHHHHHHHTTSCCSEEEEETTT-------------TEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEE-cCCCcccC-HHHHHHHHHhCCCEEEEEEecCC-------------CEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34689999 89999997 99999999999999999998554 799999999999999984 699999
Q ss_pred CceeEEEEeCC
Q 048615 540 GHDLQFTWLMP 550 (634)
Q Consensus 540 g~~l~l~W~~~ 550 (634)
|+.|++.|.++
T Consensus 90 g~~l~V~~a~~ 100 (101)
T 2la4_A 90 GRNLRTGWGKE 100 (101)
T ss_dssp TEECCCCBCCC
T ss_pred CeEEEEEeccC
Confidence 99999999876
No 225
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.2e-10 Score=95.12 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
.+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.++.+|++|+. +|..|.|
T Consensus 4 ~~~~l~v-~nlp~~~t-~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 4 GSSGLYV-GSLHFNIT-EDMLRGIFEPFGKIDNIVLMKDSD-------TGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp CCCEEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEEEECCSS-------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCcEEEE-eCCCCCCC-HHHHHHHHHhcCCEeEEEEeecCC-------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4689999 89999997 999999999999999999976531 01112699999999999999995 7999999
Q ss_pred ceeEEEEeCCCCCCC
Q 048615 541 HDLQFTWLMPSSSSN 555 (634)
Q Consensus 541 ~~l~l~W~~~~~~~~ 555 (634)
+.|++.|..+.....
T Consensus 75 ~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 75 RPMRVGHVTERLDGG 89 (95)
T ss_dssp SCCEEEESSCCCCCC
T ss_pred cEEEEEEcccccCCC
Confidence 999999998877653
No 226
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.08 E-value=3.2e-10 Score=94.36 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=67.3
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCc
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGH 541 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~ 541 (634)
+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.++.+|++|+. +|..|.|+
T Consensus 1 t~~l~V-~nlp~~~t-~~~l~~~f~~~G~i~~~~i~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 1 TFNLFV-GDLNVNVD-DETLRNAFKDFPSYLSGHVMWDMQ-------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp CEEEEE-ECCCTTCC-HHHHHHHHTTSTTEEEEEEEECTT-------TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CeEEEE-eCCCCCCC-HHHHHHHHHhcCCeeEEEEEEcCC-------CCCccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 478999 89999997 999999999999999999864421 01112789999999999999985 69999999
Q ss_pred eeEEEEeCCCC
Q 048615 542 DLQFTWLMPSS 552 (634)
Q Consensus 542 ~l~l~W~~~~~ 552 (634)
.|++.|..+..
T Consensus 72 ~l~v~~a~~~~ 82 (83)
T 3md1_A 72 PLRINWAAKLE 82 (83)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEecCcCC
Confidence 99999988753
No 227
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.08 E-value=9.1e-10 Score=98.60 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
++.+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....++|||+|.+..+|++|+. +|..|
T Consensus 4 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 73 (116)
T 2fy1_A 4 ADHPGKLFI-GGLNRETN-EKMLKAVFGKHGPISEVLLIKDRT--------SKSRGFAFITFENPADAKNAAKDMNGKSL 73 (116)
T ss_dssp TCSCCEEEE-ECCTTTCC-HHHHHHHHHTSSCCSEEEEECSTT--------TTCCCEEEEECSSHHHHHHHHHHCSSCBC
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEECCC--------CCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 567899999 89999997 999999999999999999876531 1122799999999999999995 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 74 ~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 74 HGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp SSSBCEEEECCCSSCS
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999877654
No 228
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1e-09 Score=97.10 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=71.8
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....+++||+|.++.+|++|+. +|.
T Consensus 10 ~~~~~~~~l~V-~nlp~~~~-~~~l~~~f~~~G~i~~~~i~~~~~--------g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 10 QAGRLGSTVFV-ANLDYKVG-WKKLKEVFSMAGVVVRADILEDKD--------GKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCCCCSCEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEEEEECTT--------CSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEECCC--------CCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34555789999 89999997 999999999999999999875431 1112699999999999999985 799
Q ss_pred ccCCceeEEEEeCCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~~ 555 (634)
.|.|+.|++.|.....+..
T Consensus 80 ~~~g~~l~v~~a~~~~~~~ 98 (114)
T 2do0_A 80 LLFDRPMHVKMDERALPKG 98 (114)
T ss_dssp EETTEECEEEECSCCCCCS
T ss_pred EeCCCEEEEEEcccCCCCC
Confidence 9999999999987665443
No 229
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.9e-10 Score=97.74 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=72.2
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..
T Consensus 8 ~~~~~~~l~V-~nLp~~~t-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 8 MATTKRVLYV-GGLAEEVD-DKVLHAAFIPFGDITDIQIPLDYE-------TEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp SCCCCSCEEE-ESCCSSCC-HHHHHHHHTTTSCCCCEECCCCSS-------SCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred cCCCCCEEEE-eCCCCCCC-HHHHHHHhhccCCEEEEEEEecCC-------CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4556789999 89999997 999999999999999999865431 01122799999999999999984 7999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 79 ~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 79 LFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp ETTEEEEEEECCCCCCC
T ss_pred ECCcEEEEEeCCCCCCC
Confidence 99999999999887654
No 230
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.8e-10 Score=95.07 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=68.4
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.++.+|++|+. +|..
T Consensus 12 ~~~~~~~l~V-~nlp~~~t-~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 12 LAPSKSTVYV-SNLPFSLT-NNDLYRIFSKYGKVVKVTIMKDKD-------TRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp CCCCTTSEEE-ESCCTTSC-HHHHHHHTTTTSCEEEEEECCCSS-------SCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CCCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCeEEEEEEeCCC-------CCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 4567889999 89999997 999999999999999999976541 01112689999999999999995 6999
Q ss_pred cCCceeEEEEeC
Q 048615 538 WQGHDLQFTWLM 549 (634)
Q Consensus 538 ~~g~~l~l~W~~ 549 (634)
|.|+.|++.|.+
T Consensus 83 ~~g~~l~v~~ak 94 (94)
T 2e5h_A 83 LFGRVIKASIAI 94 (94)
T ss_dssp ETTEEEEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999964
No 231
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=7.3e-10 Score=96.02 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=72.0
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
....+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..
T Consensus 8 ~~~~~~~l~v-~nLp~~~t-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 8 MASDEGKLFV-GGLSFDTN-EQSLEQVFSKYGQISEVVVVKDRE-------TQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp CCCCCSEEEE-ESCCTTCC-HHHHHHHHHHHSCCCEEEECCCSS-------SCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CCCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCeEEEEEEeCCC-------CCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999 89999997 999999999999999999976531 11112699999999999999984 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 79 ~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 79 VDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp TTSCCCEEEEEECCCCC
T ss_pred ECCeEEEEEECCCCCCC
Confidence 99999999999887654
No 232
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=95.12 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=66.0
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|.|
T Consensus 5 ~~~~l~v-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 5 SHFHVFV-GDLSPEIT-TAAIAAAFAPFGRISDARVVKDMA-------TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp -CEEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT-------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CceEEEE-eCCCCCCC-HHHHHHHHHhcCCEeEEEEEecCC-------CCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578999 89999997 999999999999999999865421 01112699999999999999995 6999999
Q ss_pred ceeEEEEeCCC
Q 048615 541 HDLQFTWLMPS 551 (634)
Q Consensus 541 ~~l~l~W~~~~ 551 (634)
+.|++.|..+.
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999998875
No 233
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=8.5e-10 Score=96.96 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c----
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S---- 534 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~---- 534 (634)
....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +
T Consensus 12 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 82 (111)
T 1x4h_A 12 VTEGKTVFI-RNLSFDSE-EEALGEVLQQFGDLKYVRVVLHPD-------TEHSKGCAFAQFMTQEAAQKCLAAASLEAE 82 (111)
T ss_dssp CCCCCCEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEECCBCSS-------SCCBCSEEEEEESSHHHHHHHHHHHCTTTT
T ss_pred CCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCCCccEEEEEECCHHHHHHHHHHhccccc
Confidence 345789999 89999997 999999999999999999875431 01112799999999999999995 4
Q ss_pred --CCccCCceeEEEEeCCCCCCC
Q 048615 535 --GKSWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 535 --g~~~~g~~l~l~W~~~~~~~~ 555 (634)
|..|.|+.|++.|..+.....
T Consensus 83 ~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 83 GGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp TCCEESSSCEEEEECCCCCCCCC
T ss_pred cCCcEEcCEEEEEEECCCCccCC
Confidence 889999999999998876543
No 234
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=6.5e-10 Score=96.66 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|
T Consensus 12 ~~~~~~l~V-~nlp~~~t-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 12 ADDNATIRV-TNLSEDTR-ETDLQELFRPFGSISRIYLAKDKT-------TGQSKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp CSSSEEEEE-ESCCTTCC-HHHHHTTSTTTCCEEEEEEEECSS-------SCSEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCCeEEEEEeecCC-------CCceeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 455789999 89999997 999999999999999999875431 00112689999999999999996 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 83 ~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 83 DHLILNVEWAKPSTNS 98 (103)
T ss_dssp TTEECEEEESSCCCCS
T ss_pred CCcEEEEEECCCCCCC
Confidence 9999999998887654
No 235
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.06 E-value=4.7e-10 Score=95.30 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+.... ....+++||+|.++.+|++|+. +|..|
T Consensus 5 ~~~~~~l~V-~nlp~~~t-~~~l~~~f~~~G~v~~~~i~~~~---------g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 5 SSGACQIFV-RNLPFDFT-WKMLKDKFNECGHVLYADIKMEN---------GKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp SSSCCEEEE-CSCCTTCC-HHHHHHHHHTTSCEEEEEEEESS---------SCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred CCCCcEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEccC---------CCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456789999 89999997 99999999999999999987421 0112689999999999999985 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 74 ~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 74 SGREIDVRIDRNASGP 89 (92)
T ss_dssp TTBCCCCEECSCCSSC
T ss_pred CCcEEEEEEcCCCCCC
Confidence 9999999998877654
No 236
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=2.6e-10 Score=121.09 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=65.1
Q ss_pred CCCCEEEEeC--CCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-cc---CCe--EEEEE
Q 048615 174 KALRTLFVNN--VPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VM---GNR--FIKLW 245 (634)
Q Consensus 174 ~~~~tLfVgn--Lp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l---~gR--~IkV~ 245 (634)
.+..+|||+| |+++ +++++|+++|++||.|.+|.|+..++||||+|.+.++|++|++.||| .+ .|+ +|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~-~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNG-VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGT-CCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCC-CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 4567999999 5785 99999999999999999999999999999999999999999999999 33 356 67778
Q ss_pred eec
Q 048615 246 WAN 248 (634)
Q Consensus 246 wak 248 (634)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 764
No 237
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=6.2e-10 Score=94.50 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+.. +++||+|.+..+|++|+. +|..|
T Consensus 6 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~~~~~~---------------~~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 6 SGNTWKIFV-GNVSAACT-SQELRSLFERRGRVIECDVVK---------------DYAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp SCCSCCEEE-ESCCTTCC-HHHHHHHHHHHSCEEEEEECS---------------SCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHcCCCEEEEEEEC---------------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 455789999 89999997 999999999999999999873 489999999999999985 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 69 ~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 69 KGKRINVELSTKGQKK 84 (90)
T ss_dssp TTEECEEEESCCCCCC
T ss_pred CCcEEEEEECCCCCCC
Confidence 9999999998877543
No 238
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=7.2e-10 Score=94.50 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=69.2
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+..+++|+| ++||..++ +++|+++|.+||.|..|.+.. .+|||+|.+..+|++|+. +|..|
T Consensus 7 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~v~~v~~~~---------------~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 7 GKASTKLHV-GNISPTCT-NQELRAKFEEYGPVIECDIVK---------------DYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CCSSEEEEE-ESCCSSCC-HHHHHHHHHTTSCCCEEEECS---------------SEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEC---------------CEEEEEECCHHHHHHHHHHhCCCee
Confidence 556789999 89999997 999999999999999999873 489999999999999994 79999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 70 ~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 70 QGKRMHVQLSTSRLRT 85 (92)
T ss_dssp TTEEEEEEESSCCCSC
T ss_pred CCcEEEEEEccCCCCC
Confidence 9999999999877654
No 239
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=1.2e-09 Score=94.12 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|.
T Consensus 6 ~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 6 SGSGRLFV-RNLSYTSS-EEDLEKLFSAYGPLSELHYPIDSL-------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CSCEEEEE-ECCCTTCC-HHHHHHHHHTTSCEEEEECCCCTT-------TCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEeEEEEEecCC-------CCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45789999 89999997 999999999999999999875431 11122799999999999999984 699999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 77 g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 77 GRMLHVLPSTIKKEA 91 (99)
T ss_dssp SCEEEEEECCCCSTT
T ss_pred CcEEEEEEcCCCccc
Confidence 999999999887654
No 240
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.05 E-value=5.7e-10 Score=93.24 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH--HcCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF--LSGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~--~~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+ ++|..|
T Consensus 4 ~~~~~~l~V-~nl~~~~~-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 4 ATTKRVLYV-GGLAEEVD-DKVLHAAFIPFGDITDIQIPLDYE-------TEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCCSSEEEE-ECCCTTCC-HHHHHHHHGGGSCEEEEECCEETT-------TTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEE-ECCCCCCC-HHHHHHHHhccCCEEEEEEEECCC-------CCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 567899999 89999997 999999999999999999864321 0111278999999999999998 479999
Q ss_pred CCceeEEEEeC
Q 048615 539 QGHDLQFTWLM 549 (634)
Q Consensus 539 ~g~~l~l~W~~ 549 (634)
.|+.|++.|.+
T Consensus 75 ~g~~l~v~~ak 85 (85)
T 3mdf_A 75 FGRTIRVNLAK 85 (85)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEcC
Confidence 99999999964
No 241
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.05 E-value=2.7e-11 Score=103.21 Aligned_cols=73 Identities=5% Similarity=0.001 Sum_probs=59.8
Q ss_pred CCccccccccccceeeec--ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIG--SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig--~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|.++| .|..+..+.++.++.++|||||+|.+.++| +||..|||..|+||+|+|.++.+..
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 334567788888888888 777777788887888899999999999999 9999999999999999999988654
No 242
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.04 E-value=8.5e-10 Score=96.12 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....++|||+|.+..+|++|+. +|..|.
T Consensus 13 ~~~~~l~v-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 13 GRDRKLFV-GMLNKQQS-EEDVLRLFQPFGVIDECTVLRGPD--------GSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp CCCCEEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEEEEECSS--------SCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEECCC--------CCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 45789999 89999997 999999999999999999876531 1112799999999999999985 799998
Q ss_pred C---ceeEEEEeCCCCCC
Q 048615 540 G---HDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g---~~l~l~W~~~~~~~ 554 (634)
| +.|++.|..+....
T Consensus 83 gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 83 PGASSSLVVKFADTDKES 100 (105)
T ss_dssp TTCSSCCEEEESCSSCCC
T ss_pred CCCCccEEEEECccCccc
Confidence 7 99999999877654
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=1.4e-09 Score=95.87 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
.+..++|+| ++||..++ +++|+++|.+||+|.+|.+..+ +++||+|.+..+|++|+. +|..|
T Consensus 12 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~~~i~~~--------------g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 12 RRSENRVVV-SGLPPSGS-WQDLKDHMREAGDVCYADVYRD--------------GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp CSCCCEEEE-ESCCSSCC-HHHHHHHHGGGSCEEEEEEETT--------------TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEeEEEEecC--------------CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 455789999 89999997 9999999999999999998754 589999999999999996 58899
Q ss_pred CC-----ceeEEEEeCCCCCCC
Q 048615 539 QG-----HDLQFTWLMPSSSSN 555 (634)
Q Consensus 539 ~g-----~~l~l~W~~~~~~~~ 555 (634)
.| +.|++.|..+...+.
T Consensus 76 ~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 76 RSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp ECTTSCEEEEEEEESSCCSCCC
T ss_pred cCCcCcceEEEEEeCCCCCCCC
Confidence 99 999999999876653
No 244
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.04 E-value=1.3e-09 Score=94.94 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|..|.+.. +++||+|.+..+|++|+. +|..|
T Consensus 8 ~~~~~~l~V-~nl~~~~t-~~~l~~~F~~~G~i~~v~~~~---------------~~afV~f~~~~~a~~A~~~l~g~~~ 70 (103)
T 2dgu_A 8 MAKVKVLFV-RNLANTVT-EEILEKAFSQFGKLERVKKLK---------------DYAFIHFDERDGAVKAMEEMNGKDL 70 (103)
T ss_dssp CCCCCCEEE-ECCCTTCC-HHHHHHHHHHHSCEEEEEECS---------------SCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEC---------------CEEEEEeCCHHHHHHHHHHHCCCcc
Confidence 455789999 89999997 999999999999999999872 589999999999999996 69999
Q ss_pred CCceeEEEEeCCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~~ 555 (634)
.|+.|++.|..+.....
T Consensus 71 ~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 71 EGENIEIVFAKPPDQKR 87 (103)
T ss_dssp TTEEEEEEECCCCCCCC
T ss_pred CCCEEEEEEcCCCcccc
Confidence 99999999998876543
No 245
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=95.20 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
...+++|+| ++||..++ +++|+++|.+||+|..|.+..+.. .....++|||+|.+..+|++|+. +|..|
T Consensus 10 ~~~~~~l~V-~nLp~~~t-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 10 VDGMITLKV-DNLTYRTS-PDSLRRVFEKYGRVGDVYIPREPH-------TKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp CSCCCEEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEECCBCSS-------SCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred CCCCeEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEeCCC-------CCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 345789999 89999997 999999999999999999875431 01112799999999999999996 69999
Q ss_pred CCceeEEEEeCCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~~ 555 (634)
.|+.|++.|..+.....
T Consensus 81 ~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 81 DGRELRVQVARYGRRDL 97 (103)
T ss_dssp TTBCCEEEECSSCCSCC
T ss_pred CCcEEEEEECCcCCCCC
Confidence 99999999998776543
No 246
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=6.8e-10 Score=96.19 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCCce
Q 048615 465 TAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQGHD 542 (634)
Q Consensus 465 t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g~~ 542 (634)
|+|+| ++||..++ +++|+++|.+||+|.+|.+..+. .++|||+|.+..+|++|+. +|..|.|+.
T Consensus 1 ~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYV-GNLGTGAG-KGELERAFSYYGPLRTVWIARNP------------PGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEE-ECCCSSCS-HHHHHHHHHHHCCCSEEEEESSS------------SSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeeCC------------CCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 68999 89999997 99999999999999999987651 2799999999999999996 699999999
Q ss_pred eEEEEeCCCCCC
Q 048615 543 LQFTWLMPSSSS 554 (634)
Q Consensus 543 l~l~W~~~~~~~ 554 (634)
|++.|..+....
T Consensus 67 l~V~~a~~~~~~ 78 (101)
T 2hvz_A 67 VRVELSTGMPRR 78 (101)
T ss_dssp CEEEESSSCCCS
T ss_pred EEEEEccCCCCc
Confidence 999999887644
No 247
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.8e-09 Score=94.86 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=70.9
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|..|.+.... .+ .++|||+|.+..+|++|+. +|..
T Consensus 18 ~~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~v~~~~i~~~~---------~~-~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 18 AGNNDCRIYV-GNLPPDIR-TKDIEDVFYKYGAIRDIDLKNRR---------GG-PPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp CCCCSSEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEECCSS---------SS-SCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEECC---------CC-CcEEEEEECCHHHHHHHHHHcCCCE
Confidence 4556789999 89999997 99999999999999999996542 12 2699999999999999984 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 86 ~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 86 YDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp ETTEECEEECCCCCCCC
T ss_pred ECCeEEEEEEcccCCCC
Confidence 99999999998876543
No 248
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=7e-10 Score=97.66 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=70.5
Q ss_pred cccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CC
Q 048615 458 YKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GK 536 (634)
Q Consensus 458 ~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~ 536 (634)
+.-|...++|+| ++||..++ +++|++||.+||+|.+|.+..+.. ..+ .+++||+|.+..+|++|+.. |.
T Consensus 5 ~~~~~~~~~lfV-~~Lp~~~t-e~~L~~~F~~~G~v~~v~i~~d~~-------g~~-rG~aFV~F~~~e~a~~Ai~~~~~ 74 (103)
T 1s79_A 5 LKNDVKNRSVYI-KGFPTDAT-LDDIKEWLEDKGQVLNIQMRRTLH-------KAF-KGSIFVVFDSIESAKKFVETPGQ 74 (103)
T ss_dssp CSSCSGGGCEEE-ECCCTTCC-HHHHHHHHHTSSCEEEEEEECCCT-------TSC-CCEEEEEESSHHHHHHHHTSSCC
T ss_pred ccccCCCCEEEE-ECCCCCCC-HHHHHHHHhhcCCEEEEEEEECCC-------CCC-ccEEEEEECCHHHHHHHHHcCCC
Confidence 455777899999 89999997 999999999999999999986541 112 37999999999999999864 88
Q ss_pred ccCCceeEEEEeCC
Q 048615 537 SWQGHDLQFTWLMP 550 (634)
Q Consensus 537 ~~~g~~l~l~W~~~ 550 (634)
.|.|+.|.+.|...
T Consensus 75 ~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 75 KYKETDLLILFKDD 88 (103)
T ss_dssp CCTTTTCEEEEHHH
T ss_pred EECCEEEEEEEchH
Confidence 99999999999653
No 249
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.03 E-value=3.3e-10 Score=102.55 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=64.0
Q ss_pred CCEEEEeCCC--CCC--CCHHHHHHhhccCCCEEEEEEecCC----------CeEEEEeCCHHHHHHHHHcCCC-ccCCe
Q 048615 176 LRTLFVNNVP--LKS--NRREALLSHFQKFGEVVDIYIPLNS----------ERAFVQFSKREEAEAALKSPDA-VMGNR 240 (634)
Q Consensus 176 ~~tLfVgnLp--~d~--~te~~L~~~FskfG~I~~v~v~~dk----------g~AFV~F~s~e~A~~Ai~~lng-~l~gR 240 (634)
.++|+|.|+- .+. --+++|++.|++||.|.+|.|+.++ ||+||+|.+.++|.+|++.||| .++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 5799999983 210 1368999999999999999998752 6999999999999999999999 89999
Q ss_pred EEEEEeecC
Q 048615 241 FIKLWWANR 249 (634)
Q Consensus 241 ~IkV~wak~ 249 (634)
.|+|.|+..
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999853
No 250
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.9e-10 Score=98.52 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=61.9
Q ss_pred Cccccccccccceeeecceeee-eccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNR-SNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~-~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
....+++.+..+|.++|.|..+ .++.++.++.++|||||+|.+.++| +|+..|||..|.|++|+|.++.++.
T Consensus 14 p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 14 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 3345677788888888888777 7777777778899999999999999 9999999999999999999998765
No 251
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.03 E-value=1.6e-10 Score=99.36 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=64.8
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.++| +|+..|||..|+|++|+|.++.++.
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 344567788899999999998888888887778899999999999999 9999999999999999999998765
No 252
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=6.6e-10 Score=95.59 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
.+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ..+...+ .++|||+|.+..+|++|+. +|..|.|
T Consensus 4 ~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~---~~gt~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFI-KNLNFSTT-EETLKGVFSKVGAIKSCTISKKKN---KAGVLLS-MGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEEEEEEEC---TTCCEEE-EEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC---CCCCcCc-ccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4689999 89999997 999999999999999999875431 0000011 2699999999999999997 6999999
Q ss_pred ceeEEEEeCCCCCC
Q 048615 541 HDLQFTWLMPSSSS 554 (634)
Q Consensus 541 ~~l~l~W~~~~~~~ 554 (634)
+.|++.|..+....
T Consensus 78 ~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 78 HKLEVRISERATKP 91 (98)
T ss_dssp EECEEECSSCSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999998877654
No 253
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.02 E-value=1.3e-10 Score=99.83 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=59.3
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.|+| ++...+++.++.+|.++|+|..++.+. ++|||||+|.+.++| +|+..|||..|.||+|+|+.|.
T Consensus 11 ~VgN-L~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 11 LLKN-LTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp EEEC-CCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred EEeC-CCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3444 566778899999999999999887643 499999999999999 9999999999999999999874
No 254
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=6.3e-10 Score=98.37 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=70.1
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .++ ++|||+|.++.+|++|+. +|..
T Consensus 25 ~~~~~~~l~V-~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~~~~--------~~k-g~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 25 NKSQPKRLHV-SNIPFRFR-DPDLRQMFGQFGKILDVEIIFNER--------GSK-GFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp CTTCCCEEEE-ESCCTTCC-HHHHHHHGGGTCCCSCEEECCBTT--------BCT-TEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEE-ECCCCcCC-HHHHHHHHHhcCCEEEEEEEECCC--------CCc-eEEEEEECCHHHHHHHHHHcCCCE
Confidence 4566889999 89999997 999999999999999999875531 122 799999999999999995 6999
Q ss_pred cCCceeEEEEeCCC
Q 048615 538 WQGHDLQFTWLMPS 551 (634)
Q Consensus 538 ~~g~~l~l~W~~~~ 551 (634)
|.|+.|++.|..+.
T Consensus 94 ~~g~~l~V~~a~~~ 107 (109)
T 2err_A 94 VEGRKIEVNNATAR 107 (109)
T ss_dssp ETTEECEEEECCCS
T ss_pred ECCEEEEEEECCCC
Confidence 99999999998765
No 255
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.9e-09 Score=93.16 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcc--cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSY--GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S 534 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~f--Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~ 534 (634)
......++|+| ++||..++ +++|+++|.+| |+|.+|.+.. ++|||+|.+..+|++|+. +
T Consensus 10 ~~~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~g~g~v~~~~~~~---------------g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 10 DTMSSVKILYV-RNLMLSTS-EEMIEKEFNNIKPGAVERVKKIR---------------DYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp SCSSCCCEEEE-ESCCTTCC-HHHHHHHHHTTSTTCEEEEEECS---------------SEEEEEESSHHHHHHHHHHHS
T ss_pred cccCCcCEEEE-eCCCCCCC-HHHHHHHHHhcCCcceEEEEEeC---------------CeEEEEeCCHHHHHHHHHHhC
Confidence 34455789999 89999997 99999999999 9999998762 589999999999999995 6
Q ss_pred CCccCCceeEEEEeCCCCC
Q 048615 535 GKSWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 535 g~~~~g~~l~l~W~~~~~~ 553 (634)
|..|.|+.|++.|..+...
T Consensus 73 g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 73 GKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SEEETTEEEEEECCCCCCC
T ss_pred CCEeCCcEEEEEECCCCCC
Confidence 9999999999999987664
No 256
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=6e-10 Score=97.20 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=73.1
Q ss_pred cccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCC
Q 048615 458 YKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGK 536 (634)
Q Consensus 458 ~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~ 536 (634)
..-|...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|.
T Consensus 10 ~~~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~a~~~~~~ 80 (105)
T 2dh8_A 10 NSGADEIGKLFV-GGLDWSTT-QETLRSYFSQYGEVVDCVIMKDKT-------TNQSRGFGFVKFKDPNCVGTVLASRPH 80 (105)
T ss_dssp CCCSSSSSEECC-BSCCTTCC-HHHHHHHHHTTSCEEEEEEEECSS-------SCCEEEEEEEEESSTTHHHHHHHHCSE
T ss_pred cCCCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeeCCC-------CCCcceEEEEEECCHHHHHHHHHhCCC
Confidence 345777899999 89999997 999999999999999999876531 00112689999999999999987 688
Q ss_pred ccCCceeEEEEeCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~ 554 (634)
.|.|+.|++.|..+....
T Consensus 81 ~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 81 TLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EETTEEEBCCCSCCSSCC
T ss_pred eECCEEEEEEEccCCCCC
Confidence 999999999998877654
No 257
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.01 E-value=2.2e-10 Score=101.73 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM 154 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~ 154 (634)
...+++.+..+|.++|.|..+.++.++.++.++|||||+|.+.++| +||..|||..|.|++|+|.++.++..
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 35 QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp SSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 3456777888888888888887788777778899999999999999 99999999999999999999987653
No 258
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=8.8e-10 Score=95.30 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=71.2
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....++|||+|.+..+|++|+. +|.
T Consensus 12 ~~~~~~~~l~v-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 12 STSLEKHKLFI-SGLPFSCT-KEELEEICKAHGTVKDLRLVTNRA--------GKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp SSCCCCSCEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEEEEECTT--------SCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccCCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCCeEEEEEEECCC--------CCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 34556789999 89999997 999999999999999999875431 1112689999999999999984 699
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.|+.|++.|..+...
T Consensus 82 ~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 82 TIKENIIKVAISNSGPS 98 (100)
T ss_dssp ESSSCEEEEEECCCCSC
T ss_pred EECCEEEEEEECCCCCC
Confidence 99999999999887765
No 259
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.01 E-value=4.7e-11 Score=104.08 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=62.7
Q ss_pred cccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCC-EEEEEccCccc
Q 048615 84 AVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRG-KRIIEGDAIQK 152 (634)
Q Consensus 84 ~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~G-R~I~V~~a~~k 152 (634)
..+++.+..+|+++|.|..+.++.++.++.++|||||+|.+.++| +||..|||..|.| |+|+|.++.++
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 567788899999999999888888888788899999999999999 9999999999999 99999998754
No 260
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.01 E-value=8.3e-10 Score=97.73 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=68.8
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+. . ++|||+|.+..+|++|+. +|.
T Consensus 26 ~~~~~~~~l~V-~nLp~~~t-~~~L~~~F~~~G~i~~v~i~--k-------------g~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 26 EGELSNTRLFV-RPFPLDVQ-ESELNEIFGPFGPMKEVKIL--N-------------GFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp --CCSCSEEEE-CSSCTTCC-HHHHHHHHTTTSCCCEEEEE--T-------------TEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCEEEEEEE--C-------------CEEEEEECCHHHHHHHHHHcCCC
Confidence 34667899999 89999997 99999999999999999997 3 799999999999999995 799
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.|+.|++.|..+...
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 89 SFANQPLEVVYSKLPAK 105 (108)
T ss_dssp EETTEECEEESCSCCC-
T ss_pred EECCeEEEEEEecCCCC
Confidence 99999999999887653
No 261
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.01 E-value=7.8e-10 Score=94.47 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=69.0
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....+++||+|.+..+|++|+. +|..
T Consensus 12 ~~~~~~~l~v-~nlp~~~~-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 12 QEEADRTVFV-GNLEARVR-EEILYELFLQAGPLTKVTICKDRE--------GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp CTTGGGEEEE-ECCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT--------SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCEEEEEEEECCC--------CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667899999 89999997 999999999999999999876531 1112699999999999999995 7999
Q ss_pred cCCceeEEEEeCC
Q 048615 538 WQGHDLQFTWLMP 550 (634)
Q Consensus 538 ~~g~~l~l~W~~~ 550 (634)
|.|+.|++.|.++
T Consensus 82 ~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 82 LYGRPINVSGPSS 94 (95)
T ss_dssp ETTEECEEECCCC
T ss_pred ECCCEEEEEEcCC
Confidence 9999999999653
No 262
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1e-09 Score=93.57 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.+..+|++|+. +|..|
T Consensus 12 ~~~~~~l~v-~nlp~~~t-~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 12 PDPNCCLGV-FGLSLYTT-ERDLREVFSKYGPIADVSIVYDQQ-------SRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCGGGCEEE-ESCCSSCC-HHHHHHHHHTTSCEEEEEEEECSS-------SSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEE-ECCCCCCC-HHHHHHHHHhcCCeeEEEEEEcCC-------CCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 455789999 89999997 999999999999999999865431 00112689999999999999995 69999
Q ss_pred CCceeEEEEeCC
Q 048615 539 QGHDLQFTWLMP 550 (634)
Q Consensus 539 ~g~~l~l~W~~~ 550 (634)
.|+.|++.|.++
T Consensus 83 ~g~~l~v~~a~~ 94 (95)
T 2cqc_A 83 DGRRIRVSGPSS 94 (95)
T ss_dssp TTEEEEEECCSC
T ss_pred CCEEEEEEecCC
Confidence 999999999764
No 263
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-09 Score=93.39 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEE-ecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVE-LEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~-~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
..++++|+| ++||..++ +++|+++|.+||+|.+|+ +..+.. +..+||+|.+..+|++|+. +|..
T Consensus 12 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~~~~i~~~~~-----------~~~afV~f~~~~~a~~Ai~~l~g~~ 78 (96)
T 2e44_A 12 RQRIRKLQI-RNIPPHLQ-WEVLDSLLVQYGVVESCEQVNTDSE-----------TAVVNVTYSSKDQARQALDKLNGFQ 78 (96)
T ss_dssp CCSCCCEEE-EEECSSSC-HHHHHHHHHHHSCEEEEEEECCSSS-----------SEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEE-EcCCCCCC-HHHHHHHHHhcCCeEEEEEeecCCC-----------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 456899999 89999997 999999999999999994 554331 1349999999999999984 6999
Q ss_pred cCCceeEEEEeCCCC
Q 048615 538 WQGHDLQFTWLMPSS 552 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~ 552 (634)
|.|+.|++.|..+..
T Consensus 79 ~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 79 LENFTLKVAYIPDEM 93 (96)
T ss_dssp CSSCBCEEEECCCCC
T ss_pred ECCcEEEEEEcCccc
Confidence 999999999988763
No 264
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.00 E-value=4.5e-10 Score=113.62 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=67.9
Q ss_pred cCCCcceEEEcCCCCCCCC--------CHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHH
Q 048615 460 LDNRPTAFRIMPPLPVGFA--------DVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERA 531 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~--------~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A 531 (634)
.|...++|+| |+||..+. .+++|++||.+||+|++|.+...+ ++|||+|.++.+||+|
T Consensus 130 ~~~~~rtLfV-gnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-------------G~AFV~F~~~~~Ae~A 195 (240)
T 3u1l_A 130 FRKKNKTLYV-GGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-------------NCGFVKFKYQANAEFA 195 (240)
T ss_dssp -CCCCCEEEE-ECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-------------TEEEEEESSHHHHHHH
T ss_pred cccCCceeec-CCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-------------CEEEEEeCCHHHHHHH
Confidence 4778899999 89998872 289999999999999999998766 8999999999999999
Q ss_pred H--HcCCcc------------CCceeEEEEeCCCCCC
Q 048615 532 F--LSGKSW------------QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 532 ~--~~g~~~------------~g~~l~l~W~~~~~~~ 554 (634)
+ ++|..| .|..|.+.|....+..
T Consensus 196 ~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 196 KEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred HHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 7 469988 8899999999876543
No 265
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=4.9e-10 Score=99.35 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCcccccCCCccccccccc---cceeeecceeeeeccccccC---CCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEE
Q 048615 73 NDLPVRNAGTAAVSQNTSM---SVWGRIGSSKNRSNVKEKID---ATLNSLDYLENETKEDR-EALPSLQGSYRRGKRII 145 (634)
Q Consensus 73 ~~~~v~n~~~~~~s~~~~~---svfg~Ig~V~~~~~~k~k~~---~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~ 145 (634)
+.+.|+| +....+++.+. .+|.++|.|..+.+++++.. ..++|||||+|.+.++| +||..|||..|.||+|+
T Consensus 16 ~~l~V~n-Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 16 NLVFVVG-LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SCEEEEE-ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4455555 55556677777 88888888777777766543 34569999999999999 99999999999999999
Q ss_pred EccCcccC
Q 048615 146 EGDAIQKN 153 (634)
Q Consensus 146 V~~a~~k~ 153 (634)
|.++.++.
T Consensus 95 V~~a~~k~ 102 (111)
T 2cpi_A 95 ASLGTTKY 102 (111)
T ss_dssp EESCCCCS
T ss_pred EEeccccc
Confidence 99998776
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.2e-09 Score=99.17 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c--CCccC
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S--GKSWQ 539 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~--g~~~~ 539 (634)
.++|+| ++||..++ +++|+++|.+||+|.+|.+..++ ++|||+|.+..+|++|+. + +..|.
T Consensus 31 s~~LfV-gNLp~~vt-e~dL~~lF~~fG~V~~v~i~~~k-------------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 31 SRVIHI-RKLPIDVT-EGEVISLGLPFGKVTNLLMLKGK-------------NQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CSEEEE-ESCCTTCC-HHHHHHHHTTTSCCCEEEEEGGG-------------TEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEeCCC-------------CEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 468999 89999997 99999999999999999998765 799999999999999986 3 57899
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 96 Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 96 GQPIYIQFSNHKELK 110 (119)
T ss_dssp TBCCEEEECSSSSCC
T ss_pred CeEEEEEEccCCCCC
Confidence 999999998876654
No 267
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.2e-09 Score=94.24 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCCCHHHHH----HHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 464 PTAFRIMPPLPVGFADVAVLK----EHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~----~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.++|+| ++||..++ +++|+ ++|.+||+|.+|.+..+.. . .++|||+|.+..+|++|+. +|..
T Consensus 9 ~~~l~V-~nL~~~~~-~~~l~~~l~~~F~~~G~v~~v~i~~~~~--------~--rg~afV~f~~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 9 GADVQV-SNIDYRLS-RKELQQLLQEAFARHGKVKSVELSPHTD--------Y--QLKAVVQMENLQDAIGAVNSLHRYK 76 (96)
T ss_dssp CEEEEE-ESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEECSCCS--------T--TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCEEEE-ECCCCCCC-HHHHHHHHHHhccccCcEEEEEEEeCCC--------C--CeEEEEEECCHHHHHHHHHHhCCCE
Confidence 478999 89999997 89999 9999999999999986541 1 2689999999999999985 6999
Q ss_pred cCCceeEEEEeCCCCC
Q 048615 538 WQGHDLQFTWLMPSSS 553 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~ 553 (634)
|.|+.|++.|..+...
T Consensus 77 ~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 77 IGSKKILVSLATGASG 92 (96)
T ss_dssp ETTEEEEEEECCCSSC
T ss_pred ECCeEEEEEEcCCCCC
Confidence 9999999999877654
No 268
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.1e-09 Score=95.60 Aligned_cols=84 Identities=13% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|
T Consensus 20 ~~~~~~l~V-~nlp~~~t-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 20 SVEGWILFV-TGVHEEAT-EEDIHDKFAEYGEIKNIHLNLDRR-------TGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp BTTBEEEEE-ECCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT-------TSSEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHhccCCeEEEEEEecCC-------CCceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 345689999 89999997 999999999999999999865431 01112689999999999999995 69999
Q ss_pred CCceeEEEEeCCCCC
Q 048615 539 QGHDLQFTWLMPSSS 553 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~ 553 (634)
.|+.|++.|..+..+
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 91 MGQPISVDWCFVRGP 105 (106)
T ss_dssp SSSBCEEEESEESSC
T ss_pred CCcEEEEEeecCCCC
Confidence 999999999876543
No 269
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.8e-09 Score=91.79 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
...++|+| ++| .++ +++|+++|.+||+|.+|.+.... +++||+|.++.+|++|+. +|..|.
T Consensus 13 ~~~~~l~V-~n~--~~t-~~~l~~~F~~~G~i~~v~i~~~~-------------g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 13 RKGNTLYV-YGE--DMT-PTLLRGAFSPFGNIIDLSMDPPR-------------NCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCCSEEEE-ECS--SCC-HHHHHHHHTTTSCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEE-cCC--CCC-HHHHHHHHhhCCCEEEEEecCCC-------------CEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34679999 555 565 89999999999999999996544 799999999999999985 699999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 76 g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 76 SVQLKVNIARKQPML 90 (97)
T ss_dssp TEEEEEECCSSCCCC
T ss_pred CeEEEEEECCCCCCC
Confidence 999999999877654
No 270
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.98 E-value=6.2e-10 Score=93.82 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQ 539 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~ 539 (634)
|...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|.
T Consensus 3 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 3 EADARSIYV-GNVDYGAT-AEELEAHFHGCGSVNRVTILCDKF-------SGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp HHHHTEEEE-ESCCTTCC-HHHHHHHHGGGCCEEEEEEEESCS-------SSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred CCcCCEEEE-eCCCCCCC-HHHHHHHHHhCCCEEEEEEEecCC-------CCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 345689999 89999997 999999999999999999875431 11112799999999999999983 499999
Q ss_pred CceeEEEEeCCCC
Q 048615 540 GHDLQFTWLMPSS 552 (634)
Q Consensus 540 g~~l~l~W~~~~~ 552 (634)
|+.|++.|.++..
T Consensus 74 g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 74 GRQIKVIPKRTNR 86 (89)
T ss_dssp TEECEEEETTTTS
T ss_pred CcEEEEEEccCCC
Confidence 9999999987654
No 271
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.98 E-value=2.3e-09 Score=93.51 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=71.0
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH--HcCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF--LSGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~--~~g~~ 537 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ...+ .++|||+|.++.+|++|+ ++|..
T Consensus 9 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~------~g~~-~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 9 KDHDAIKLFI-GQIPRNLD-EKDLKPLFEEFGKIYELTVLKDRF------TGMH-KGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp CCTTCEEEEE-ESCCTTCC-HHHHHHHHHHHSCCCEEECCCCSS------SCSC-CSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeeEEEEEecCC------CCCc-ceEEEEEECCHHHHHHHHHHhcCCc
Confidence 3566889999 89999997 999999999999999999876531 0112 279999999999999998 46887
Q ss_pred c---CCceeEEEEeCCCCCC
Q 048615 538 W---QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~---~g~~l~l~W~~~~~~~ 554 (634)
+ .|+.|++.|..+....
T Consensus 80 ~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 80 TLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CCTTCSSCCEEEECCCCSCC
T ss_pred ccCCCCceEEEEECCccccc
Confidence 7 7899999998876653
No 272
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=3.6e-10 Score=98.20 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=70.6
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.|...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..
T Consensus 4 ~~~~~~~l~V-~nlp~~~~-~~~l~~~f~~~G~i~~~~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 4 VDRSLRSVFV-GNIPYEAT-EEQLKDIFSEVGPVVSFRLVYDRE-------TGKPKGYGFCEYQDQETALSAMRNLNGRE 74 (104)
T ss_dssp SHHHHSCEEE-ESCCTTSC-HHHHHHHHHTTSCCSEEEEEEETT-------TTEEEEEEEEECSCHHHHHHHHHHSSSBS
T ss_pred cCCCccEEEE-eCCCCcCC-HHHHHHHHHhcCCeeEEEEEeCCC-------CCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 4556799999 89999997 999999999999999999875421 00112699999999999999994 6999
Q ss_pred cCCceeEEEEeCCCCC
Q 048615 538 WQGHDLQFTWLMPSSS 553 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~ 553 (634)
|.|+.|++.|..+...
T Consensus 75 ~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 75 FSGRALRVDNAASEKN 90 (104)
T ss_dssp CSSSCBEEEETTCTTH
T ss_pred eCCcEEEEEeCCCccc
Confidence 9999999999877654
No 273
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.98 E-value=1.7e-09 Score=93.70 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=66.5
Q ss_pred cCCCcceEEEcCCCCC-CCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 460 LDNRPTAFRIMPPLPV-GFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~-~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.....++|+| ++||. .++ +++|+++|.+||+|.+|.+. . ++|||+|.+..+|++|+. +|.
T Consensus 18 ~~~~~~~l~V-~nLp~~~~t-~~~L~~~F~~~G~v~~v~i~--~-------------g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 18 GSHMKSRLFI-GNLPLKNVS-KEDLFRIFSPYGHIMQINIK--N-------------AFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp -CCTTCEEEE-ESCCSSCCC-HHHHHHHHGGGSCEEEEEEC--S-------------SEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCCCEEEE-eCCCcccCC-HHHHHHHHHhcCCEEEEEEe--C-------------CEEEEEECCHHHHHHHHHHcCCC
Confidence 4556789999 89998 897 99999999999999999995 2 699999999999999985 599
Q ss_pred ccCCceeEEEEeCCC
Q 048615 537 SWQGHDLQFTWLMPS 551 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~ 551 (634)
.|.|+.|++.|.++.
T Consensus 81 ~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 81 MNFGKKLILEVSSSN 95 (97)
T ss_dssp EETTEECEEEECCCC
T ss_pred EECCEEEEEEecCCC
Confidence 999999999997654
No 274
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.98 E-value=8.6e-11 Score=103.78 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=58.2
Q ss_pred EeCCCCCCCCHHHHHHhh------------ccCCCEEEEEEecC-----CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEE
Q 048615 181 VNNVPLKSNRREALLSHF------------QKFGEVVDIYIPLN-----SERAFVQFSKREEAEAALKSPDA-VMGNRFI 242 (634)
Q Consensus 181 VgnLp~d~~te~~L~~~F------------skfG~I~~v~v~~d-----kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~I 242 (634)
+.+||+. +++++|+++| ++||.|.+|.|+++ +|||||+|.+.++|.+|+..||| .++||.|
T Consensus 20 ~~~l~~~-~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSA-VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccc-cCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 5677774 7887777777 99999999999876 47999999999999999999999 8999999
Q ss_pred EEEee
Q 048615 243 KLWWA 247 (634)
Q Consensus 243 kV~wa 247 (634)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99996
No 275
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.98 E-value=1.3e-09 Score=95.92 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|
T Consensus 23 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 23 SVEGWILFV-TSIHEEAQ-EDEIQEKFCDYGEIKNIHLNLDRR-------TGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp BTTBEEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEECCBCTT-------TSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEecCC-------CCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 445689999 89999997 999999999999999999865431 11112799999999999999995 79999
Q ss_pred CCceeEEEEeCCCCC
Q 048615 539 QGHDLQFTWLMPSSS 553 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~ 553 (634)
.|+.|++.|..+..+
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 94 MGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTEECEEEESEESSC
T ss_pred CCcEEEEEEcccCCC
Confidence 999999999876543
No 276
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.1e-09 Score=94.23 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCC-CCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 461 DNRPTAFRIMPPLPV-GFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~-~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
....++|+| ++||. .++ +++|+++|.+||+|.+|.+. . +++||+|.+..+|++|+. +|..
T Consensus 7 ~~~~~~l~V-~nlp~~~~t-~~~l~~~F~~~G~v~~v~i~--~-------------g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 7 IPPKSRLFI-GNLPLKNVS-KEDLFRIFSPYGHIMQINIK--N-------------AFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp --CCEEEEE-ESSTTSCCC-HHHHHHHHTTTCCCCEEEEE--T-------------TEEEEEESCHHHHHHHHHHHTCSS
T ss_pred CCCCCEEEE-eCCCcccCC-HHHHHHHHHhcCCEEEEEEe--C-------------CEEEEEECCHHHHHHHHHHcCCCe
Confidence 445789999 89998 887 99999999999999999995 2 699999999999999996 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 70 ~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 70 NFGKKLILEVSSSNARP 86 (96)
T ss_dssp CBTTTBCEEEEECCCC-
T ss_pred eCCcEEEEEEcCcCCCC
Confidence 99999999999876543
No 277
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.1e-09 Score=94.96 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhccccee--------EEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLA--------SVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF 532 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~--------sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~ 532 (634)
+...++|+| ++||..++ +++|+++|.+||+|. .|.+..+.. .....++|||+|.+..+|++|+
T Consensus 12 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-------~g~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 12 DSDNSAIYV-QGLNDSVT-LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-------TGKPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCEEEE-ECCCTTCC-HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-------TCSBCSEEEEEBSSHHHHHHHH
T ss_pred CCCCCEEEE-cCCCCCCC-HHHHHHHHHhcCCEeEccccCccCEEEEEeCC-------CCCeeeEEEEEECCHHHHHHHH
Confidence 556889999 89999997 999999999999998 477765421 0111269999999999999999
Q ss_pred H--cCCccCCceeEEEEeCCCCCC
Q 048615 533 L--SGKSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 533 ~--~g~~~~g~~l~l~W~~~~~~~ 554 (634)
. +|..|.|+.|++.|..+....
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 83 EWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHTTCEETTEECEEECSSCCCCS
T ss_pred HHcCCCccCCCEEEEEECCCCCCC
Confidence 5 799999999999999887664
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=93.67 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhccccee-EEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLA-SVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~-sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
..+++|+| ++||..++ +++|+++|.+||+|. +|.+..+.. .....++|||+|.++.+|++|+. +|..|
T Consensus 7 ~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 7 GMAASLWM-GDLEPYMD-ENFISRAFATMGETVMSVKIIRNRL-------TGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SSSSEEEE-CSCCTTCC-HHHHHHHHHHTTCCCCEEEEEECSS-------SCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCccEEEE-eCCCCCCC-HHHHHHHHHHhCCcceEEEEeecCC-------CCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 35789999 89999997 999999999999999 998865431 00112689999999999999996 69999
Q ss_pred CCce----eEEEEeCCCCCC
Q 048615 539 QGHD----LQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~----l~l~W~~~~~~~ 554 (634)
.|+. |++.|.++...+
T Consensus 78 ~g~~~~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 78 PGATPAKRFKLNYATYSGPS 97 (99)
T ss_dssp SSCSSCEECCEEETTCCSSS
T ss_pred CCCCcceeEEEeecCCCCCC
Confidence 9988 999998877654
No 279
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=95.98 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=70.8
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.++.+|++|+. +|.
T Consensus 21 ~~~~~~~~l~V-~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 21 KGSAGPMRLYV-GSLHFNIT-EDMLRGIFEPFGRIESIQLMMDSE-------TGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CSCSSCEEEEE-ECCCSSCC-HHHHHHHHTTTSCEEEEEEEEETT-------TTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEEcCC-------CCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 44667899999 89999997 999999999999999999875421 00112699999999999999985 799
Q ss_pred ccCCceeEEEEeCCCC
Q 048615 537 SWQGHDLQFTWLMPSS 552 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~ 552 (634)
.|.|+.|++.|.++.+
T Consensus 92 ~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 92 ELAGRPMKVGHVTERT 107 (108)
T ss_dssp CSSSSCCEEECSCSSC
T ss_pred EECCEEEEEEEcccCC
Confidence 9999999999987754
No 280
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=7.2e-09 Score=92.03 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=70.5
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc--CC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS--GK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~--g~ 536 (634)
.-|...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+.. +
T Consensus 12 ~~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~Ai~~~~~- 81 (116)
T 2cqd_A 12 QKDTTFTKIFV-GGLPYHTT-DASLRKYFEGFGDIEEAVVITDRQ-------TGKSRGYGFVTMADRAAAERACKDPNP- 81 (116)
T ss_dssp CCSCSSSEEEE-ECCCSSCC-HHHHHHHHHTTSCEEEEEESCCSS-------SCCCCSEEEEEESSHHHHHHHHTCSSC-
T ss_pred cCCCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCCeeEEEEEEcCC-------CCccceEEEEEECCHHHHHHHHHhCCC-
Confidence 35677899999 89999997 999999999999999999976541 111126999999999999999864 6
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.|+.|++.|..+...
T Consensus 82 ~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 82 IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp EETTEECEEEESTTTCC
T ss_pred cCCCEEEEEEEcccCCC
Confidence 89999999999876543
No 281
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.95 E-value=1.7e-09 Score=90.93 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=66.4
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCcc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSW 538 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~ 538 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.+..+|++|+.. +..|
T Consensus 7 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFV-GGLSWDTS-KKDLKDYFTKFGEVVDCTIKMDPN-------TGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp CCSCTTEEEE-ECCCTTCC-HHHHHHHHTTTSCEEEEEEEECTT-------TCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCCEEEEEEeecCC-------CCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 3566889999 89999997 999999999999999999864421 011126899999999999999964 7789
Q ss_pred CCceeEEEEe
Q 048615 539 QGHDLQFTWL 548 (634)
Q Consensus 539 ~g~~l~l~W~ 548 (634)
.|+.|++.|.
T Consensus 78 ~g~~i~v~~A 87 (87)
T 3s7r_A 78 DGRVIDPKKA 87 (87)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEeC
Confidence 9999999983
No 282
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=9.1e-10 Score=93.07 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcCCccCCc
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSWQGH 541 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g~~~~g~ 541 (634)
..+++|+| ++||..++ +++|+++|.+||+|.+|.+.... .++|||+|.+..+|++|......+.|.
T Consensus 3 ~~~~~l~V-~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~~~------------~g~afV~f~~~~~a~~~~~~~~~~~g~ 68 (88)
T 1wf0_A 3 SGSSGVFV-GRCTGDMT-EDELREFFSQYGDVMDVFIPKPF------------RAFAFVTFADDQIAQSLCGEDLIIKGI 68 (88)
T ss_dssp SCCCEEEE-ESCCSSSC-HHHHHHHSTTTSCCCEEECCSSC------------CSCCEEECSCHHHHHHTTTCEEEETTE
T ss_pred CCCcEEEE-eCCCCCCC-HHHHHHHHHHcCCeeEEEEecCC------------CCEEEEEECCHHHHHHHhcCCceeCCE
Confidence 35789999 89999997 99999999999999999986431 279999999999999764444455889
Q ss_pred eeEEEEeCCCCCC
Q 048615 542 DLQFTWLMPSSSS 554 (634)
Q Consensus 542 ~l~l~W~~~~~~~ 554 (634)
.|++.|..+....
T Consensus 69 ~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 69 SVHISNAEPKHNS 81 (88)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEecCCCCCC
Confidence 9999999887654
No 283
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.1e-09 Score=93.40 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccc-eeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cC-C
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGD-LASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SG-K 536 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGe-i~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g-~ 536 (634)
+...++|+| ++||..++ +++|+++|.+||+ |..+.+.. . +++||+|.++.+|++|+. +| .
T Consensus 5 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~vv~~~~~~~-~-------------g~afV~f~~~~~A~~A~~~l~g~~ 68 (93)
T 2cqh_A 5 SSGMNKLYI-GNLSPAVT-ADDLRQLFGDRKLPLAGQVLLK-S-------------GYAFVDYPDQNWAIRAIETLSGKV 68 (93)
T ss_dssp CCCCCCEEE-ECCCTTCC-HHHHHHHHHHTTCCCSSCEEEE-T-------------TEEEECCSCHHHHHHHHHHHTTTC
T ss_pred CCCCcEEEE-eCCCCCCC-HHHHHHHHHHcCCceEEEEEcC-C-------------CEEEEEECCHHHHHHHHHHccCCe
Confidence 345689999 89999997 9999999999999 77776632 2 799999999999999985 68 8
Q ss_pred ccCCceeEEEEeCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~ 554 (634)
.|.|+.|++.|..+....
T Consensus 69 ~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 69 ELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEECEEEECCCCCCC
T ss_pred eECCEEEEEEEccCcccc
Confidence 999999999999877553
No 284
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.95 E-value=2.2e-09 Score=94.63 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=66.0
Q ss_pred CcceEEEcCCCCCC-CCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 463 RPTAFRIMPPLPVG-FADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 463 r~t~l~V~~~l~~~-~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
..++|+| ++||.. ++ +++|+++|.+||+|.+|.+. . ++|||+|.+..+|++|+. +|..|.
T Consensus 26 ~~~~l~V-~nl~~~~~t-~~~l~~~F~~~G~v~~v~i~--~-------------g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 26 INSRVFI-GNLNTALVK-KSDVETIFSKYGRVAGCSVH--K-------------GYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CSSEEEE-CSCCCSSCC-HHHHHHHHGGGSCCSEEEEE--T-------------TEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCcEEEE-eCCCcccCC-HHHHHHHHHhCCCeEEEEEe--C-------------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3589999 899999 86 99999999999999999992 2 799999999999999984 699999
Q ss_pred CceeEEEEeCCCCC
Q 048615 540 GHDLQFTWLMPSSS 553 (634)
Q Consensus 540 g~~l~l~W~~~~~~ 553 (634)
|+.|++.|..+...
T Consensus 89 g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 89 GQTLDINMAGEPKP 102 (110)
T ss_dssp TEECCEEESCCCCS
T ss_pred CeEEEEEECCCCCC
Confidence 99999999876544
No 285
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.95 E-value=2.5e-10 Score=98.69 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred cccccCCCccccccccccceeeecceee--------eeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEE
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKN--------RSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRII 145 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~--------~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~ 145 (634)
++|+| +....+++.+..+|.++|.|.. +..+.++.++.++|||||+|.+.++| +|+..|||..|.||+|+
T Consensus 16 l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 94 (99)
T 2la6_A 16 IFVQG-LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 94 (99)
T ss_dssp EEEEC-CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred EEEeC-CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34444 4456678888899999998887 77777777778899999999999999 99999999999999999
Q ss_pred EccCc
Q 048615 146 EGDAI 150 (634)
Q Consensus 146 V~~a~ 150 (634)
|.++.
T Consensus 95 V~~A~ 99 (99)
T 2la6_A 95 VSFAT 99 (99)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99863
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=97.99 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=67.5
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+.|||+|.++.+|++|+. +|.
T Consensus 58 ~~~~~~~~l~v-~nlp~~~~-~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 58 GSATTKRVLYV-GGLAEEVD-DKVLHAAFIPFGDITDIQIPLDYE-------TEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp SSCSSCCEEEE-ECCCTTCC-HHHHHHHHGGGSCEEEEECCCCTT-------TCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CCCCCCcEEEE-EeCCCCCC-HHHHHHHHHhcCCEEEEEEeecCC-------CCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34567899999 89999997 999999999999999999875531 11122799999999999999995 699
Q ss_pred ccCCceeEEEEe
Q 048615 537 SWQGHDLQFTWL 548 (634)
Q Consensus 537 ~~~g~~l~l~W~ 548 (634)
.|.|+.|++.|.
T Consensus 129 ~~~g~~l~v~~A 140 (140)
T 2ku7_A 129 ELFGRTIRVNLA 140 (140)
T ss_dssp EETTEEEEEEC-
T ss_pred EECCEEEEEEeC
Confidence 999999999983
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.95 E-value=1.3e-09 Score=97.93 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=70.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCcc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSW 538 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~ 538 (634)
.+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.+..+|++|+. +|..|
T Consensus 32 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 102 (124)
T 2jwn_A 32 KEIDKRSVYV-GNVDYGST-AQDLEAHFSSCGSINRITILCDKF-------SGHPKGYAYIEFAERNSVDAAVAMDETVF 102 (124)
T ss_dssp HHHHHTEEEE-EEECTTCC-HHHHHHHHHTTSCEEEEEEEEECT-------TSSCEEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred ccCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEecCC-------CCCcccEEEEEECCHHHHHHHHhcCCCeE
Confidence 3445789999 89999997 999999999999999999865421 01112799999999999999993 48999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+..+.
T Consensus 103 ~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 103 RGRTIKVLPKRTNMPG 118 (124)
T ss_dssp TTEECEEEESSCCCSS
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999998876554
No 288
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.95 E-value=1.9e-09 Score=97.13 Aligned_cols=84 Identities=14% Similarity=0.276 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH--HcCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF--LSGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~--~~g~~~~ 539 (634)
...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+ ++|..|.
T Consensus 20 ~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFV-TGVHEEAT-EEDIHDKFAEYGEIKNIHLNLDRR-------TGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEECCBCTT-------TSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34689999 89999997 999999999999999999865431 1111279999999999999998 4799999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|.+.|..+....
T Consensus 91 g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 91 GQPISVDWCFVRGPP 105 (126)
T ss_dssp SSBCEEEESEESSSC
T ss_pred CeEEEEEEecCCCCC
Confidence 999999999876654
No 289
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.94 E-value=1.3e-09 Score=97.59 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhccc-ceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYG-DLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fG-ei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+..++|+| ++||..++ +++|+++|.+|| +|..|.+.... + .+++||+|.++.+|++|+. +|..
T Consensus 25 p~~~~~l~V-gnLp~~~t-e~dL~~~F~~~G~~v~~v~i~~~~----------~-rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 25 PAKRYRITM-KNLPEGCS-WQDLKDLARENSLETTFSSVNTRD----------F-DGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp CCCCEEEEE-ECSSCCCC-HHHHHHHHHHHTCCCSEEECSSCS----------S-SCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCEEEE-ECCCCCCC-HHHHHHHHHHhCCeeEEEEEEcCC----------C-CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 345689999 89999997 999999999999 99999985321 1 2799999999999999994 6999
Q ss_pred cCCceeEEEEeCCCCC
Q 048615 538 WQGHDLQFTWLMPSSS 553 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~ 553 (634)
|.|+.|++.|...+++
T Consensus 92 l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 92 FRGSVITVERDDNPPP 107 (111)
T ss_dssp ETTEEEEEEESCC---
T ss_pred ECCeEEEEEECCCCCC
Confidence 9999999999875543
No 290
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=4.7e-09 Score=91.28 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=70.2
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCc
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKS 537 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~ 537 (634)
.-+..+++|+| ++||..++ +++|+++|.+|| |.+|.+..+.. .....+++||+|.+..+|++|+. +|..
T Consensus 10 ~~~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~g-i~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~A~~l~g~~ 79 (103)
T 2dng_A 10 LPTEPPYTAYV-GNLPFNTV-QGDIDAIFKDLS-IRSVRLVRDKD-------TDKFKGFCYVEFDEVDSLKEALTYDGAL 79 (103)
T ss_dssp CCSSSCEEEEE-ESCCTTCC-HHHHHHHTTTSC-EEEEEEEECSS-------SCSEEEEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCCeEEEE-eCCCCCCC-HHHHHHHHHhCC-ceEEEEeecCC-------CCccceEEEEEECCHHHHHHHHhhCCCe
Confidence 34566899999 89999997 999999999997 99999875431 00112689999999999999983 4999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 80 ~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 80 LGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp ETTEECEEEECCCCCCC
T ss_pred ECCeEEEEEEecCCCCC
Confidence 99999999998876654
No 291
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.94 E-value=2.3e-09 Score=99.74 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=68.6
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
...+++|+| ++||..++ +++|+++|.+||+|.+|.+..+. .+++||+|.+..+|++|+. +|..|
T Consensus 70 ~~~~~~l~V-~nl~~~~t-~~~l~~~F~~~G~i~~v~i~~~~------------~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 70 CPLDCKVYV-GNLGNNGN-KTELERAFGYYGPLRSVWVARNP------------PGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp STTSCEEEE-ESCCSCCS-CHHHHHHHHHHSCEEEEEECSSS------------CSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhhCCEEEEEEeeCC------------CcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 455789999 89999997 89999999999999999997652 2799999999999999985 79999
Q ss_pred CCceeEEEEeCCC
Q 048615 539 QGHDLQFTWLMPS 551 (634)
Q Consensus 539 ~g~~l~l~W~~~~ 551 (634)
.|+.|++.|..+.
T Consensus 136 ~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 136 CGCRVRVELSNGE 148 (150)
T ss_dssp SSSCCEEEECCCC
T ss_pred CCeEEEEEEcCCC
Confidence 9999999998765
No 292
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.94 E-value=2.7e-10 Score=107.81 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=67.1
Q ss_pred cccccCCCccccccccccceeeec--ceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIG--SSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig--~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+.|+| +....+++.+..+|.++| .|..++++.++.++.++|||||+|.+.++| +||..|||..|+||+|+|.++.+
T Consensus 58 lfVgn-Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 58 VYVGS-FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEC-CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred EEEeC-CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 34444 445667888999999999 888888888888888999999999999999 99999999999999999999976
Q ss_pred cC
Q 048615 152 KN 153 (634)
Q Consensus 152 k~ 153 (634)
+.
T Consensus 137 ~~ 138 (156)
T 3n9u_C 137 QN 138 (156)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 293
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.94 E-value=3.9e-10 Score=97.99 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=61.3
Q ss_pred CCccccccccccceeeecceeeeeccccc-cCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEK-IDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k-~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
+....+++.+..+|+++| |..+..+.++ .++.++|||||+|.+.++| +|| .|||..|.||+|+|.++.++
T Consensus 27 Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 27 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 344567888899999999 8888888877 4678899999999999999 999 99999999999999998764
No 294
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.94 E-value=2.3e-09 Score=91.88 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCCCHHHHH----HHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLK----EHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SG 535 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~----~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g 535 (634)
...++|+| ++||..++ +++|+ ++|.+||+|.+|.+.... .+ .++|||+|.+..+|++|+. +|
T Consensus 6 ~~~~~l~V-~nLp~~~~-~~~l~~~l~~~f~~~G~i~~v~i~~~~---------~~-~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 6 RPNHTIYI-NNLNEKIK-KDELKKSLHAIFSRFGQILDILVSRSL---------KM-RGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCCSEEEE-ESCCTTSC-HHHHHHHHHHHHGGGSCEEEEECCHHH---------HH-TTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEEEcCC---------Cc-CcEEEEEeCCHHHHHHHHHHhCC
Confidence 34689999 89999997 88888 999999999999986321 01 1689999999999999985 79
Q ss_pred CccCCceeEEEEeCCCCC
Q 048615 536 KSWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 536 ~~~~g~~l~l~W~~~~~~ 553 (634)
..|.|+.|++.|..+...
T Consensus 74 ~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CEETTEECEEEECSSCCT
T ss_pred CEECCcEEEEEEccCCCc
Confidence 999999999999887643
No 295
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-09 Score=91.73 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=66.7
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+...++|+| ++||..++ +++|+++|.+||+|. +.... .....+++||+|.+..+|++|+. +|..
T Consensus 11 ~~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~g~v~---~~~~~--------~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 11 WSGESKTLVL-SNLSYSAT-EETLQEVFEKATFIK---VPQNQ--------NGKSKGYAFIEFASFEDAKEALNSCNKRE 77 (101)
T ss_dssp CSCCCSEEEE-ESCCTTCC-HHHHHHHCSSCSEEE---CCBCS--------SSCBCSEEEEECSSHHHHHHHHHHTSSEE
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCEEE---EEECC--------CCCEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667899999 89999997 999999999999983 22111 01112799999999999999996 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 78 ~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 78 IEGRAIRLELQGPRGSP 94 (101)
T ss_dssp ETTEEEEEEECSSCCCC
T ss_pred eCCeEEEEEEcCCCCCC
Confidence 99999999999887654
No 296
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=1.1e-09 Score=94.10 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=67.8
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+..+++|+| ++||..++ +++|+++|.+||.|..|.+..... .....++|||+|.+..+|++|+. +|.
T Consensus 10 ~~~~~~~~l~v-~nLp~~~t-~~~l~~~F~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 10 SGKPGPTIIKV-QNMPFTVS-IDEILDFFYGYQVIPGSVCLKYNE-------KGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CCCCSSEEEEE-ESCCTTCC-HHHHHHHTTTSCCCTTTCEEEECS-------SSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCCCEEEE-eCCCCCCC-HHHHHHHHHHcCCccceEEEEECC-------CCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35677899999 89999997 999999999999997655432210 01112789999999999999995 599
Q ss_pred ccCCceeEEEEeCCCC
Q 048615 537 SWQGHDLQFTWLMPSS 552 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~ 552 (634)
.|.|+.|++.|...+.
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 81 PIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EETTEECEEEESSCSS
T ss_pred eeCCeEEEEEEcCCCC
Confidence 9999999999976543
No 297
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.93 E-value=3.7e-09 Score=93.53 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=67.8
Q ss_pred cccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CC
Q 048615 458 YKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GK 536 (634)
Q Consensus 458 ~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~ 536 (634)
..-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ...+ .++|||+|.+..+|++|+.. |.
T Consensus 19 ~~~~~~~~~lfV-~nLp~~~t-e~~L~~~F~~~G~i~~v~i~~~~~------tg~~-kg~afV~f~~~~~A~~Ai~~~~~ 89 (109)
T 2rs2_A 19 SHMGSSGCKMFI-GGLSWQTT-QEGLREYFGQFGEVKECLVMRDPL------TKRS-RGFGFVTFMDQAGVDKVLAQSRH 89 (109)
T ss_dssp -------CCEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEEECCCTT------TCCC-TTCEEEEESSHHHHHHHHHSSCE
T ss_pred cccCCCCCEEEE-eCCCCCCC-HHHHHHHHHccCCeEEEEEEECCC------CCCc-CcEEEEEECCHHHHHHHHHHCCC
Confidence 345667899999 89999997 999999999999999999876531 0112 27999999999999999965 77
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.|+.|++.|..+...
T Consensus 90 ~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 90 ELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp EETTEEEEEEECCCCCC
T ss_pred cCCCEEEEEEEccCCCC
Confidence 88999999999887654
No 298
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=6.3e-09 Score=90.64 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQ 539 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~ 539 (634)
+..+++|+| ++||..++ +++|+++|.+|| |.+|.+..+.. +...+ .++|||+|.+..+|++|+. +|..|.
T Consensus 12 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G-i~~v~i~~~~~-----~~g~~-~g~afV~f~~~~~a~~A~~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFL-GNLPYDVT-EESIKEFFRGLN-ISAVRLPREPS-----NPERL-KGFGYAEFEDLDSLLSALSLNEESLG 82 (104)
T ss_dssp SSSCEEEEE-ESCCSSCC-HHHHHHHTTTSC-EEEEECCBCSS-----CTTSB-CSCEEEEESSHHHHHHHHGGGTCEET
T ss_pred CCCCCEEEE-eCCCCcCC-HHHHHHHHHHCC-ceEEEEecCCC-----CCCCc-CeEEEEEECCHHHHHHHHhcCCCEeC
Confidence 456799999 89999997 999999999999 99999875531 00011 2699999999999999993 499999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 83 g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 NKRIRVDVADQAQDK 97 (104)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CcEEEEEEccCCCCC
Confidence 999999998887654
No 299
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.9e-09 Score=93.31 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=67.9
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccc-eeEEEec-CCccccCCCCCCCCCCceEEEEecChHHHHHHHH---cC-C
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGD-LASVELE-DGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL---SG-K 536 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGe-i~sv~~~-~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~---~g-~ 536 (634)
-.++|+| ++||..++ +++|+++|.+||+ |.+|.+. .+. ....+ .++|||+|.++.+|++|+. +| .
T Consensus 7 ~~~~l~V-~nLp~~~t-~~~l~~~f~~~G~~v~~v~i~~~~~------~~g~~-~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 7 GNCRLFI-GGIPKMKK-REEILEEIAKVTEGVLDVIVYASAA------DKMKN-RGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp CSEEEEE-ECCCTTSC-HHHHHHHHHHHSTTEEEEECCSSSC------TTTTT-CCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred CCCEEEE-eCCCCcCC-HHHHHHHHHHhcCCceEEEEEccCC------CCCCc-CcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 3689999 89999997 9999999999998 9999986 221 00112 2799999999999999986 34 7
Q ss_pred ccCCceeEEEEeCCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~~ 554 (634)
.|.|+.|++.|..+....
T Consensus 78 ~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 78 QLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp CBTTBCCEEEESCSSCST
T ss_pred eecCCeEEEEEcCCCCCc
Confidence 899999999999877653
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=2e-09 Score=96.54 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred cceEEEcCCCCCC-CCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH----cCCcc
Q 048615 464 PTAFRIMPPLPVG-FADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL----SGKSW 538 (634)
Q Consensus 464 ~t~l~V~~~l~~~-~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~----~g~~~ 538 (634)
.++|+| ++||.. ++ +++|+++|.+||+|.+|.+...+ ++|||+|.+..+|++|+. ++..|
T Consensus 25 ~~~l~V-~NLp~~~~t-e~~L~~lF~~fG~V~~v~i~~~k-------------g~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 25 GRVIHL-SNLPHSGYS-DSAVLKLAEPYGKIKNYILMRMK-------------SQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCEEEE-ESCCCSSCC-SHHHHTTTTTTSCCSEEEEETTT-------------TEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCEEEE-eCCCCccCC-HHHHHHHHHhcCCEEEEEEecCC-------------CEEEEEECCHHHHHHHHHHhccCCceE
Confidence 678999 899997 87 89999999999999999997655 799999999999999986 25679
Q ss_pred CCceeEEEEeCCCCC
Q 048615 539 QGHDLQFTWLMPSSS 553 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~ 553 (634)
.|+.|++.|......
T Consensus 90 ~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 90 QGRCVKVDLSEKYKK 104 (112)
T ss_dssp SSSCCEEEEECSCSS
T ss_pred CCEEEEEEECccccc
Confidence 999999999876543
No 301
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.92 E-value=3.2e-09 Score=97.28 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|..||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|
T Consensus 39 ~~~~~~l~V-~nLp~~~~-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 109 (139)
T 1u6f_A 39 PDVLRNLMV-NYIPTTVD-EVQLRQLFERYGPIESVKIVCDRE-------TRQSRGYGFVKFQSGSSAQQAIAGLNGFNI 109 (139)
T ss_dssp TTTTSEEEE-ESCSTTCC-HHHHHHHHHHHSCEEEEEEEEETT-------TTEEEEEEEEEESSHHHHHHHHHHTTTEEC
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEEcCC-------CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 455789999 89999997 999999999999999999875431 00112689999999999999996 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 110 ~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 110 LNKRLKVALAASGHQR 125 (139)
T ss_dssp SSCEEEEEESSCCCCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999887654
No 302
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.92 E-value=6.3e-10 Score=101.78 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=66.8
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+.|+| +....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.++| +||..|||..|.|++|+|.++.++.
T Consensus 49 l~V~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 49 LGVFG-LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp BCEET-CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 34444 455667888899999999988888888887778899999999999999 9999999999999999999997654
No 303
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.91 E-value=5.4e-09 Score=97.69 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ...+ .+++||+|.++.+|++|+. +|..|
T Consensus 67 ~~~~~~l~v-~nl~~~~~-~~~l~~~F~~~G~v~~~~i~~~~~------~g~~-~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 67 VEGMTSLKV-DNLTYRTS-PDTLRRVFEKYGRVGDVYIPRDRY------TKES-RGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CCBCCEEEE-ESCCTTCC-HHHHHHHHHHHSCEEEEECCCCSS------CTTS-CCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeecCC------CCcc-ceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 455789999 89999997 999999999999999999876531 0112 2799999999999999995 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+..+.
T Consensus 138 ~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 138 DGRELRVQMARYGRPP 153 (158)
T ss_dssp SSSEEEEEEECCSSCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999887654
No 304
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.91 E-value=3.4e-09 Score=92.57 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....+++||+|.+..+|++|+. +|..|.
T Consensus 27 ~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 27 ETGGKLLV-SNLDFGVS-DADIQELFAEFGTLKKAAVHYDRS--------GRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCSEEEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEEEEECTT--------SCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEECCC--------CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45789999 89999997 999999999999999999875421 0112699999999999999986 799999
Q ss_pred CceeEEEEeC
Q 048615 540 GHDLQFTWLM 549 (634)
Q Consensus 540 g~~l~l~W~~ 549 (634)
|+.|++.|.+
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9999999975
No 305
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=2.8e-09 Score=94.01 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=65.5
Q ss_pred cceEEEcCCCCC-CCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cC--Ccc
Q 048615 464 PTAFRIMPPLPV-GFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SG--KSW 538 (634)
Q Consensus 464 ~t~l~V~~~l~~-~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g--~~~ 538 (634)
.++|+| ++||. .++ +++|+++|.+||+|.+|.+...+ ++|||+|.+..+|++|+. +| ..|
T Consensus 15 ~~~l~V-~nLp~~~~t-e~dL~~lF~~fG~V~~v~i~~~k-------------g~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 15 RRVVHI-MDFQRGKNL-RYQLLQLVEPFGVISNHLILNKI-------------NEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCEEEE-ESCCCSSSH-HHHHHTTTGGGSCEEEEEECSSS-------------SCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCEEEE-eCCCCCcCC-HHHHHHHHHhcCCEEEEEEEcCC-------------CEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 578999 89999 887 99999999999999999998665 689999999999999986 34 469
Q ss_pred CCceeEEEEeCCCC
Q 048615 539 QGHDLQFTWLMPSS 552 (634)
Q Consensus 539 ~g~~l~l~W~~~~~ 552 (634)
.|+.|++.|.....
T Consensus 80 ~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 80 FGKPVRVHLSQKYK 93 (102)
T ss_dssp TTEECEEEEECCCT
T ss_pred CCcEEEEEECCCCC
Confidence 99999999988654
No 306
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.90 E-value=2.5e-09 Score=95.22 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=67.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+...++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....+++||+|.+..+|++|+. +|..
T Consensus 36 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~~~i~~~~~-------~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 36 EGPEGCNLFI-YHLPQEFT-DTDLASTFLPFGNVISAKVFIDKQ-------TSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCCSEEEEE-ECSCTTCC-HHHHHHHTTTSCEEEEEEECCCSS-------SSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEeCCC-------CCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3556789999 89999997 999999999999999999875531 01112799999999999999996 5999
Q ss_pred cCCceeEEEEeC
Q 048615 538 WQGHDLQFTWLM 549 (634)
Q Consensus 538 ~~g~~l~l~W~~ 549 (634)
|.|+.|++.|.+
T Consensus 107 ~~g~~l~V~~ak 118 (118)
T 2khc_A 107 VGTKRLKVQLKK 118 (118)
T ss_dssp ETTEECCEEEC-
T ss_pred ECCEEEEEEecC
Confidence 999999999953
No 307
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.90 E-value=7.1e-09 Score=93.29 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
....++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....++|||+|.++.+|++|+. +|..|
T Consensus 32 ~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~v~i~~~~~--------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 32 VETGAKLLV-SNLDFGVS-DADIQELFAEFGTLKKAAVDYDRS--------GRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp CSSCEEEEE-ESCCSSCC-HHHHHHHHHTTSCCSEEEEECCSS--------SSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeeEEEEEECCC--------CCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 456789999 89999997 999999999999999999875431 1112799999999999999985 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+....
T Consensus 102 ~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 102 DGRPMDIQLVASQIDL 117 (124)
T ss_dssp SSCEEEEEEECCTTCC
T ss_pred CCcEEEEEEeCCCCCC
Confidence 9999999998876543
No 308
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.90 E-value=3.4e-10 Score=96.77 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=61.6
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+.|+| +....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.++| +||..|||..|.||+|+|.++.+
T Consensus 18 l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 18 IKVQN-MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEEEC-CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred EEEeC-CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 34444 445567778888888888877666666666777899999999999999 99999999999999999998753
No 309
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.90 E-value=4.7e-10 Score=91.76 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=58.6
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a 149 (634)
+....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.++| +|+. |||..+.|++|+|.+|
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 334567778888999999988888888877778899999999999999 8885 9999999999999875
No 310
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.89 E-value=2.8e-09 Score=90.99 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcCCc--
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKS-- 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g~~-- 537 (634)
.++-+++|+| |+||..++ +++|+++|.+||+|.+|.+.... .++|||+|.++.+|+++ +|..
T Consensus 7 ~~~~~~~l~V-~~Lp~~~t-e~~L~~~F~~~G~i~~v~i~~~s------------rGfaFV~F~~~~~A~~~--~~~~~~ 70 (89)
T 3d2w_A 7 HHHHGSKVFV-GRCTEDMT-AEELQQFFCQYGEVVDVFIPKPF------------RAFAFVTFADDKVAQSL--CGEDLI 70 (89)
T ss_dssp ----CCEEEE-ESCCTTCC-HHHHHHHHTTTSCEEEEECCSSC------------CSEEEEEESCHHHHHHH--TTCEEE
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHhccCCEEEEEEeeCC------------CCEEEEEECCHHHHHHH--cCCCcc
Confidence 4667899999 89999998 99999999999999999987531 27999999999999953 4554
Q ss_pred cCCceeEEEEeCCCCC
Q 048615 538 WQGHDLQFTWLMPSSS 553 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~ 553 (634)
+.|+.|.+.|..+...
T Consensus 71 ~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 71 IKGISVHISNAEPKHN 86 (89)
T ss_dssp ETTEEEEEEECC----
T ss_pred cCCEEEEEEEcCCCCc
Confidence 4589999999877643
No 311
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.1e-10 Score=95.08 Aligned_cols=70 Identities=7% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
+....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.++| +|+..|||..|.||.|+|.++.
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 344567778888999999988888888877788899999999999999 9999999999999999998765
No 312
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.89 E-value=3.7e-09 Score=97.34 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+..+++|+| ++||..++ +++|+++|.+||+|..|.+..+.. .....+++||+|.++.+|++|+. +|..|
T Consensus 44 ~~~~~~l~V-~nLp~~~t-e~~L~~~F~~~G~i~~v~i~~~~~-------~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 44 VEGMTSLKV-DNLTYRTS-PDTLRRVFEKYGRVGDVYIPRDRY-------TKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp GGGCCCEEE-ECCCSSCH-HHHHHHHHGGGSCCSEEECCCCSS-------SSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEecCC-------CCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 445789999 89999997 999999999999999999875431 11122699999999999999995 69999
Q ss_pred CCceeEEEEeCCCCCC
Q 048615 539 QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~~ 554 (634)
.|+.|++.|..+..+.
T Consensus 115 ~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 115 DGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSCCEEEECCCCCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999887654
No 313
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.89 E-value=4.7e-09 Score=92.97 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=67.1
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
.+++|+| ++||..++ +++|+++|.+||.|.+|.+..+.. + .++|||+|.+..+|++|+. +|..|.|
T Consensus 7 ~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~v~~v~i~~~~~---------~-~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 7 VNRILYI-RNLPYKIT-AEEMYDIFGKYGPIRQIRVGNTPE---------T-RGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CCSEEEE-ESCCTTCC-HHHHHHHHHTTSCEEEEEEECSTT---------T-TTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEeeCCC---------C-CcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578999 89999997 999999999999999999864320 1 2799999999999999985 6999999
Q ss_pred ceeEEEEeCCCC
Q 048615 541 HDLQFTWLMPSS 552 (634)
Q Consensus 541 ~~l~l~W~~~~~ 552 (634)
+.|++.|..+..
T Consensus 75 ~~l~v~~a~~~~ 86 (115)
T 3lqv_A 75 RYLVVLYYNANR 86 (115)
T ss_dssp CBCEEEECCHHH
T ss_pred eEEEEEEecCCh
Confidence 999999987544
No 314
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.89 E-value=5.4e-09 Score=97.81 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=71.6
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
....+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..
T Consensus 35 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 35 LLKKSCTLYV-GNLSFYTT-EEQIYELFSKSGDIKKIIMGLDKM-------KKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp TTTTCCEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT-------TCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred cCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999 89999997 999999999999999999965431 00112699999999999999996 6999
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|.++....
T Consensus 106 ~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 106 LDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp ETTEECEEEEESCCCTT
T ss_pred ECCeEEEEEECCCCCCc
Confidence 99999999999876654
No 315
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3e-09 Score=94.63 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=69.3
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccce-eEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDL-ASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei-~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~ 536 (634)
..+...++|+| ++||..++ +++|++||..||.| .+|.+..+.. -...++|||+|.+..+|++|+. +|.
T Consensus 10 ~~~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~g~v~~~v~i~~d~~--------g~~~G~afV~F~~~~~a~~Al~~~~~ 79 (114)
T 2cpy_A 10 DVNSAKVCAHI-TNIPFSIT-KMDVLQFLEGIPVDENAVHVLVDNN--------GQGLGQALVQFKNEDDARKSERLHRK 79 (114)
T ss_dssp SCCSCCCEEEE-ESCCTTSC-HHHHHHHTTTSCCCSTTEEECCCTT--------SSCSSCEEEECSSHHHHHHHGGGCSE
T ss_pred CCCCCccEEEE-eCcCCcCC-HHHHHHHHHhCCCcCCeEEEEECCC--------CCcceEEEEEECCHHHHHHHHHhCCC
Confidence 35566788999 89999997 99999999999999 7888764331 1113799999999999999985 588
Q ss_pred ccCCceeEEEEeCCCC
Q 048615 537 SWQGHDLQFTWLMPSS 552 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~ 552 (634)
.|.|+.|++.|..+..
T Consensus 80 ~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 80 KLNGREAFVHVVTLED 95 (114)
T ss_dssp EETTEEEEEEEECHHH
T ss_pred ccCCeEEEEEECCHHH
Confidence 9999999999987664
No 316
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=1.4e-09 Score=97.81 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=62.3
Q ss_pred CCEEEEeCCCC--CC-------CCHHHHHHhhccCCCEEEEEEecC--CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEE
Q 048615 176 LRTLFVNNVPL--KS-------NRREALLSHFQKFGEVVDIYIPLN--SERAFVQFSKREEAEAALKSPDA-VMGNRFIK 243 (634)
Q Consensus 176 ~~tLfVgnLp~--d~-------~te~~L~~~FskfG~I~~v~v~~d--kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~Ik 243 (634)
.+.|.|.|+=. +. --+++|++.|++||.|.+|.|.++ +||+||+|.+.++|.+|++.||| .++||.|+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~ 86 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT 86 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 56888888732 10 014578999999999999999886 58999999999999999999999 89999999
Q ss_pred EEeec
Q 048615 244 LWWAN 248 (634)
Q Consensus 244 V~wak 248 (634)
|.|+.
T Consensus 87 v~~~~ 91 (114)
T 3s6e_A 87 AAYVP 91 (114)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99995
No 317
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.4e-09 Score=89.51 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
...+++|+| ++||..++ +++|+++|.+||.|. +.+.... + .++|||+|.+..+|++|+. +|..|
T Consensus 16 ~~~~~~l~V-~nL~~~~t-~~~l~~~F~~~G~v~-~~~~~~~----------~-~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 16 APLAADVYV-GNLPRDAR-VSDLKRALRELGSVP-LRLTWQG----------P-RRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp SCCCCEEEE-ECCCTTCC-HHHHHHHHHHTTCCC-SEEEEET----------T-TTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred CCCCCEEEE-eCCCCcCc-HHHHHHHHHhcCCEE-EEEEcCC----------C-CcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 344789999 89999997 999999999999996 4433221 1 2799999999999999984 69999
Q ss_pred CCceeEEEEeCCCCC
Q 048615 539 QGHDLQFTWLMPSSS 553 (634)
Q Consensus 539 ~g~~l~l~W~~~~~~ 553 (634)
.|+.|++.|..+...
T Consensus 82 ~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 82 GTDTLRVALARQQRD 96 (97)
T ss_dssp SSSCCEEEECCCCCC
T ss_pred CCcEEEEEEcCCCCC
Confidence 999999999887654
No 318
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.6e-09 Score=91.28 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhc-ccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc-
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSS-YGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS- 537 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~-fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~- 537 (634)
...++|+| ++||..++ +++|+++|.+ ||+|.+|.+..+.. ....++|||+|.+..+|++|+. +|..
T Consensus 7 ~~~~~l~V-~nLp~~~t-~~~l~~~F~~~~G~v~~v~i~~~~~--------g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 76 (104)
T 2dhg_A 7 GPEYSLFV-GDLTPDVD-DGMLYEFFVKVYPSCRGGKVVLDQT--------GVSKGYGFVKFTDELEQKRALTECQGAVG 76 (104)
T ss_dssp SCCCCEEE-ECCCTTCC-HHHHHHHHHHHCTTEEEEEEEECTT--------CCEEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred CCCcEEEE-eCCCCCCC-HHHHHHHHHHhCCCeEEEEEEECCC--------CCccceEEEEECCHHHHHHHHHHccCCcc
Confidence 34689999 89999997 9999999999 99999999865420 1112799999999999999996 5888
Q ss_pred cCCceeEEEEeCCCCCC
Q 048615 538 WQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~~ 554 (634)
|.|+.|++.|..+....
T Consensus 77 ~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 77 LGSKPVRLSVAIPKASR 93 (104)
T ss_dssp SSSSCCCCCBCCCCCSC
T ss_pred cCCEeEEEEEccCCCcC
Confidence 99999999998776543
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=5.4e-09 Score=94.10 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=65.8
Q ss_pred cceEEEc-CCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc--
Q 048615 464 PTAFRIM-PPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW-- 538 (634)
Q Consensus 464 ~t~l~V~-~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~-- 538 (634)
+++|+|. |+|+.+++ +++|+++|.+||+|.+|.+...+ +++||+|.++.+|++|+. +|+.|
T Consensus 25 t~~L~V~Ng~L~~~~t-e~~L~~~F~~fG~v~~v~i~~~r-------------gfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALLMPPNK-------------PYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSEEEEETCTGGGTCC-HHHHHHHHHHHSCEEEEECCTTC-------------SCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCCCCCC-HHHHHHHHHhcCCeEEEEEeCCC-------------CEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 5668883 56999887 99999999999999999987654 799999999999999995 69877
Q ss_pred ---CCceeEEEEeCCCCCC
Q 048615 539 ---QGHDLQFTWLMPSSSS 554 (634)
Q Consensus 539 ---~g~~l~l~W~~~~~~~ 554 (634)
+|..|.+.|....+.+
T Consensus 91 ~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp TTSCEEECEEEEESCCCCS
T ss_pred ccCCCcEEEEEecccCccc
Confidence 6789999998866543
No 320
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.87 E-value=2.8e-10 Score=96.46 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|.++|.|..+..+.++.++.++|||||+|.+.+ | +|+..|||..+.|++|+|.++.+..
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3445677788889999998888888888877788999999999999 9 9999999999999999999987654
No 321
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.87 E-value=3.4e-09 Score=86.79 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccCCcee
Q 048615 465 TAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQGHDL 543 (634)
Q Consensus 465 t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~g~~l 543 (634)
++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+.. ...|.|+.|
T Consensus 1 ~~l~v-~nlp~~~t-~~~l~~~F~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFI-GGLSWQTT-QEGLREYFGQFGEVKECLVMRDPL-------TKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 71 (77)
T ss_dssp CCEEE-ESCCSSCC-SHHHHHHHTTTSCCCCEEEECCCC-------SSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCC
T ss_pred CEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEecCCC-------CCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEE
Confidence 57999 89999997 899999999999999999876531 111227999999999999999964 478899999
Q ss_pred EEEEe
Q 048615 544 QFTWL 548 (634)
Q Consensus 544 ~l~W~ 548 (634)
++.|.
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99995
No 322
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2e-08 Score=87.87 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeE-EEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLAS-VELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~s-v~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~ 538 (634)
....++|+| ++||..++ +++|++||.+||.|.. |.+..+. +-...++|||+|.+..+|++|+.. |..|
T Consensus 12 ~~~~~~l~V-~nLp~~~t-e~~l~~~F~~~G~v~~~v~i~~~~--------~g~~~G~afV~F~~~~~a~~A~~~~~~~~ 81 (104)
T 1wg5_A 12 TANDGFVRL-RGLPFGCS-KEEIVQFFSGLEIVPNGMTLPVDF--------QGRSTGEAFVQFASQEIAEKALKKHKERI 81 (104)
T ss_dssp CSCCCEEEE-ESCCTTCC-HHHHHHHTTTCCEEEEEEECCBCS--------SSCBCSEEEEEESSHHHHHHHHTTTTCCS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCcceeEEEEECC--------CCCcceEEEEEECCHHHHHHHHHhCcchh
Confidence 345689999 89999997 9999999999999987 7765432 111237999999999999999864 8899
Q ss_pred CCceeEEEEeCCCC
Q 048615 539 QGHDLQFTWLMPSS 552 (634)
Q Consensus 539 ~g~~l~l~W~~~~~ 552 (634)
.|+.|++.|..+..
T Consensus 82 ~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 82 GHRYIEIFKSSRAE 95 (104)
T ss_dssp SSSCCEEEEECTTT
T ss_pred CCcEEEEEECCHHH
Confidence 99999999987654
No 323
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=6.3e-09 Score=92.04 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=67.8
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ..+ .+++||+|.+..+|++|+. +|..
T Consensus 21 ~~~~~~~l~V-~nlp~~~t-~~~l~~~F~~~G~i~~~~i~~~~~-------g~~-~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 21 QEQDPTNLYI-SNLPLSMD-EQELENMLKPFGQVISTRILRDSS-------GTS-RGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp CCCCTTEEEE-ESCCTTCC-HHHHHHTTTTTSCEEEEEEEECSS-------SCE-EEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred cCCCCCEEEE-eCCCCCCC-HHHHHHHHHhcCCEEEEEEEECCC-------CCc-ceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3556789999 89999997 999999999999999999875420 011 2689999999999999985 6888
Q ss_pred c--------CCceeEEEEeCCC
Q 048615 538 W--------QGHDLQFTWLMPS 551 (634)
Q Consensus 538 ~--------~g~~l~l~W~~~~ 551 (634)
| .++.|.+.|..|.
T Consensus 91 ~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 91 IKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCCTTSCCCSSCBEEEECCCS
T ss_pred EcCCccccCCCCceeEEccCCC
Confidence 8 5788999998864
No 324
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.9e-09 Score=95.76 Aligned_cols=72 Identities=6% Similarity=0.144 Sum_probs=61.3
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccCC
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKNM 154 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~~ 154 (634)
....+++.+..+|.++|.|..+.++.++.++.++|||||+|.+.++| +||.. ||..|.|++|+|.++.++..
T Consensus 36 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 36 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 34556777888888888888887888777778899999999999999 99977 99999999999999987653
No 325
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=5.7e-10 Score=98.91 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|.++|.|..+.++.++.++.++|||||+|.+.++| +|| .|||..|.|++|+|.++.++.
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 344567788889999999988888888887778899999999999999 999 999999999999999987643
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.4e-09 Score=89.02 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=64.4
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccCCc
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQGH 541 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~g~ 541 (634)
..++|+| ++||..++ +++|+++|.+||+|.+|.+.... ..++||+|.+..+|++|+. +|..|.|+
T Consensus 7 ~~~~l~V-~nl~~~~t-~~~l~~~F~~~G~v~~v~~~~~~------------g~~afV~f~~~~~a~~ai~l~g~~~~g~ 72 (94)
T 2e5g_A 7 GLRSVFV-SGFPRGVD-SAQLSEYFLAFGPVASVVMDKDK------------GVFAIVEMGDVGAREAVLSQSQHSLGGH 72 (94)
T ss_dssp TCCEEEE-ECCCTTCC-HHHHHHHGGGTSCEEEEEECSSS------------CCEEEEEESSHHHHHHHHTCSCCEETTE
T ss_pred CCCEEEE-ECCCCCCC-HHHHHHHHHhcCCeEEEEEcCCC------------CcEEEEEECCHHHHHHHHhcCCeEECCE
Confidence 4579999 89999997 99999999999999998333221 0289999999999999985 58899999
Q ss_pred eeEEEEeCCCCC
Q 048615 542 DLQFTWLMPSSS 553 (634)
Q Consensus 542 ~l~l~W~~~~~~ 553 (634)
.|++.|..+...
T Consensus 73 ~l~V~~a~~~~~ 84 (94)
T 2e5g_A 73 RLRVRPREQKEF 84 (94)
T ss_dssp ECCCBCSCCSCC
T ss_pred EEEEEECCcCCC
Confidence 999998766554
No 327
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.85 E-value=4.7e-09 Score=85.63 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=62.1
Q ss_pred eEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccCCceeE
Q 048615 466 AFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQGHDLQ 544 (634)
Q Consensus 466 ~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~g~~l~ 544 (634)
+|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+.. |..|.|+.|+
T Consensus 1 ~l~v-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFV-GGLSPDTP-EEKIREYFGGFGEVESIELPMDNK-------TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE 71 (75)
T ss_dssp CEEE-SCCCSSCC-HHHHHHHHHHHSCCSEECCCCSCC-------CSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCC
T ss_pred CEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCC-------CCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 5889 89999997 999999999999999999875431 111237999999999999999865 7889999999
Q ss_pred EEEe
Q 048615 545 FTWL 548 (634)
Q Consensus 545 l~W~ 548 (634)
+.|.
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9883
No 328
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.85 E-value=6.1e-09 Score=94.90 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=70.1
Q ss_pred cCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeE--EEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cC
Q 048615 460 LDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLAS--VELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SG 535 (634)
Q Consensus 460 lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~s--v~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g 535 (634)
-+..+++|+| ++||..++ +++|+++|.+||+|.. |.+..+.. .....+++||+|.+. +|++|+. +|
T Consensus 19 ~~~~~~~lfV-~nL~~~~t-e~~L~~~F~~~G~v~~~~v~i~~d~~-------tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 19 SENANDTIIL-RNLNPHST-MDSILGALAPYAVLSSSNVRVIKDKQ-------TQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CSCCCCEEEE-CSCCTTCC-SHHHHHHHGGGCCCCTTTEECCBCSS-------SSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCCCEEEE-eCCCCCCC-HHHHHHHHHHhCCcceeeEEEEEcCC-------CCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 4566789999 89999997 8999999999999977 77765431 111237999999999 9999984 69
Q ss_pred C----ccCCceeEEEEeCCCCCCC
Q 048615 536 K----SWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 536 ~----~~~g~~l~l~W~~~~~~~~ 555 (634)
. .|.|+.|++.|..+.....
T Consensus 89 ~~~~~~~~gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 89 LHPPLTIDGKTINVEFAKGSKRDM 112 (131)
T ss_dssp CCCSCCGGGCCCCCEECCCSCCCC
T ss_pred CCCCccCCCEEEEEEECCCCCCCC
Confidence 8 9999999999998875443
No 329
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=92.03 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|..+ .|..+..+.+ .++.++|||||+|.+.++| +||. |||..|.||+|+|.++.++.
T Consensus 18 Lp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 44456777788888877 6666666666 5567799999999999999 9998 99999999999999987653
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=3.1e-09 Score=92.04 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=57.9
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|..++.|+++. ++.++.++|||||+|.+.++| +||..|||..|.|++|+|.++.++.
T Consensus 23 Lp~~~t~~~l~~~F~~~~~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 23 LSEDTTEETLKESFDGSVRARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp CCTTCCHHHHHHTSTTCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCCccCHHHHHHHhcCCeEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 344567788889998887666554 444556799999999999999 9999999999999999999998765
No 331
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.83 E-value=9.8e-09 Score=90.29 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=65.2
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc--c
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS--W 538 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~--~ 538 (634)
..++|+| ++||.+++ +++|++.|.+||.|.+|.+...+ +.|||.|.+..+|++|+. +|.. |
T Consensus 20 ps~~l~V-~NLp~~~t-e~~L~~lF~~fG~V~~v~i~~~k-------------g~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 20 ASPVVHI-RGLIDGVV-EADLVEALQEFGPISYVVVMPKK-------------RQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp CCSEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEEETTT-------------TEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred CCcEEEE-eCCCCCCC-HHHHHHHHhccCCEEEEEEEcCC-------------CEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 4578999 89999997 99999999999999999987655 799999999999999986 3654 7
Q ss_pred CCceeEEEEeCCC
Q 048615 539 QGHDLQFTWLMPS 551 (634)
Q Consensus 539 ~g~~l~l~W~~~~ 551 (634)
.|+.|.+.|.+++
T Consensus 85 ~Gr~i~V~~S~~k 97 (100)
T 3r27_A 85 AGHPAFVNYSTSQ 97 (100)
T ss_dssp TTEEEEEEECSCS
T ss_pred CCcEEEEEecccc
Confidence 8999999997654
No 332
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1e-08 Score=88.33 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCCEEEEeCCC----CCCCC---HHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEe
Q 048615 175 ALRTLFVNNVP----LKSNR---REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWW 246 (634)
Q Consensus 175 ~~~tLfVgnLp----~d~~t---e~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~w 246 (634)
+..||+|.-.+ ..+.+ ..+|.+.|++||.|..++|+.++ +||+|.+.++|.+|+. |+| .++||.|+|.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 35688887765 22223 26799999999999999999876 8999999999999998 999 89999999999
Q ss_pred ecCC
Q 048615 247 ANRD 250 (634)
Q Consensus 247 ak~~ 250 (634)
++++
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9865
No 333
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.83 E-value=5.3e-09 Score=99.06 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. .....++|||+|.+..+|++|+. +|..|.|
T Consensus 71 ~~~~l~V-~nLp~~~t-~~~L~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 71 EGWILFV-TSIHEEAQ-EDEIQEKFCDYGEIKNIHLNLDRR-------TGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp -CEEEEE-ESCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT-------TSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHhhcCCCEEEEEEEecCC-------CCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3678999 89999997 999999999999999999875421 01112799999999999999995 6999999
Q ss_pred ceeEEEEeCCCCCC
Q 048615 541 HDLQFTWLMPSSSS 554 (634)
Q Consensus 541 ~~l~l~W~~~~~~~ 554 (634)
+.|.+.|..+..+.
T Consensus 142 ~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 142 QTIQVDWCFVKGPK 155 (165)
T ss_dssp EECEEEESEECC--
T ss_pred EEEEEEEecCCCCC
Confidence 99999998876653
No 334
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.83 E-value=8e-10 Score=92.09 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=51.6
Q ss_pred cccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCE-EEEEc
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGK-RIIEG 147 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR-~I~V~ 147 (634)
+++.+..+|.++|.|..+..+ +.++.++|||||+|.+.++| +|+..|||..|.|| +|+|.
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 567788888888888887766 34567799999999999999 99999999999999 88874
No 335
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.5e-08 Score=89.50 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccce----eEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--c
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDL----ASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--S 534 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei----~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~ 534 (634)
....++|+| ++||..++ +++|+++|.+||.| ..+.+.... + .++|||+|.+..+|++|+. +
T Consensus 22 ~~~~~~l~V-~nLp~~~t-~~~l~~~f~~~G~v~~~~~~~~~~~g~----------~-~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 22 GEPNKVLYL-KNLSPRVT-ERDLVSLFARFQEKKGPPIQFRMMTGR----------M-RGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp CSCCSEEEE-ECCCTTCC-HHHHHHHTHHHHHSSSSCCEEEEECSS----------S-CSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHHhCCccceEEEEEcCCCc----------c-ceEEEEEECCHHHHHHHHHHhC
Confidence 345689999 89999997 99999999999999 455544222 1 2799999999999999995 6
Q ss_pred CCccCCceeEEEEeCCCCCC
Q 048615 535 GKSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 535 g~~~~g~~l~l~W~~~~~~~ 554 (634)
|..|.|+.|++.|..+....
T Consensus 89 g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 89 GYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp TCBCSSCBCEEEECCCCSCC
T ss_pred CCEeCCcEEEEEEccCCCCC
Confidence 99999999999999887654
No 336
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.83 E-value=8.1e-09 Score=90.49 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCcceEEEcCCCCCCCCC-----HHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--
Q 048615 461 DNRPTAFRIMPPLPVGFAD-----VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-- 533 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~-----~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-- 533 (634)
+.-.++|+| ++||..+.+ +++|+++|.+||+|.+|.+.... ..+ .++|||+|.+..+|++|+.
T Consensus 12 ~~~~~~l~V-~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--------g~~-~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 12 DGIDSVIVV-DNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEED--------GKT-KGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp CSCCSEEEE-ESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBT--------TBS-CCEEEEEECSSSHHHHHHHHC
T ss_pred CCCCCEEEE-eCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCC--------CCe-eeEEEEEECCHHHHHHHHHHh
Confidence 344789999 899998842 68999999999999999987321 012 2799999999999999996
Q ss_pred cCCccCCc-eeEEEEeCCC
Q 048615 534 SGKSWQGH-DLQFTWLMPS 551 (634)
Q Consensus 534 ~g~~~~g~-~l~l~W~~~~ 551 (634)
+|..|.|+ .|++.|....
T Consensus 82 ~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 82 DGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp SSEECSTTCEEEEECSCCC
T ss_pred CCcccCCCceEEEEEcchH
Confidence 69999997 9999997643
No 337
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.82 E-value=3.2e-09 Score=92.08 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcCCccCC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSWQG 540 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g~~~~g 540 (634)
+..+++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ....++|||+|.+..+|++|+.+|..|.|
T Consensus 6 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~--------g~~~g~afV~f~~~~~a~~Ai~~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFV-GGIDVRMD-ETEIRSFFARYGSVKEVKIITDRT--------GVSKGYGFVSFYNDVDVQKIVESQINFHG 75 (102)
T ss_dssp EEEEEEEEE-ECCCTTCC-HHHHHHHHGGGSCEEEEEEEECTT--------SCEEEEEEEEESSCCCHHHHTTCCCEETT
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHhCCCeEEEEEEECCC--------CCccceEEEEECCHHHHHHHHhCCCeECC
Confidence 345689999 89999997 999999999999999999875420 11127999999999999999998889999
Q ss_pred ceeEEEEeCCCCC
Q 048615 541 HDLQFTWLMPSSS 553 (634)
Q Consensus 541 ~~l~l~W~~~~~~ 553 (634)
+.|.+.|..+...
T Consensus 76 ~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 76 KKLKLGPAIRKQN 88 (102)
T ss_dssp EECEEEEEEECC-
T ss_pred EEEEEEECCcCcc
Confidence 9999999886654
No 338
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.81 E-value=9.1e-09 Score=88.05 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=67.6
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCC
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGK 536 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~ 536 (634)
.-+...++|+| ++||..++ +++|+++|.+||+|..| ..... + .++|||+|.+..+|++|+. +|.
T Consensus 11 ~~~~~~~~l~V-~nL~~~~t-~~~l~~~F~~~g~v~~~-~~~~~----------~-~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 11 KKVRAARTLLA-KNLSFNIT-EDELKEVFEDALEIRLV-SQDGK----------S-KGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp STTTGGGEEEE-ESCCSSCC-HHHHHHHHCSEEEECCE-EETTE----------E-EEEEEEEESSHHHHHHHHHHTTEE
T ss_pred ccCCCCCEEEE-eCCCCCCC-HHHHHHHHhhCCcEEEe-CCCCC----------c-ceEEEEEECCHHHHHHHHHHhCCC
Confidence 34566899999 89999997 99999999999999888 22111 1 2699999999999999996 699
Q ss_pred ccCCceeEEEEeCCCCC
Q 048615 537 SWQGHDLQFTWLMPSSS 553 (634)
Q Consensus 537 ~~~g~~l~l~W~~~~~~ 553 (634)
.|.|+.|++.|..+...
T Consensus 77 ~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 77 EIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EETTEEEEEEECSSSCC
T ss_pred EECCeEEEEEEcCCCCC
Confidence 99999999999877654
No 339
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.81 E-value=6.2e-09 Score=88.13 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=65.3
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..++|+| ++||..++ +++|+++|.+| +|.+|.+.... +++||+|.++.+|++|+. +|..|.|
T Consensus 4 ~~~~l~V-~nLp~~~t-~~~l~~~F~~~-~v~~~~i~~~~-------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 4 GSSGILV-KNLPQDSN-CQEVHDLLKDY-DLKYCYVDRNK-------------RTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCEEE-ESCCSSCC-HHHHHHHTCSS-CCCCEEEEGGG-------------TEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHhhC-CeEEEEEeCCC-------------cEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4688999 89999997 99999999999 99999985332 799999999999999985 6999999
Q ss_pred ceeEEEEeCCCC
Q 048615 541 HDLQFTWLMPSS 552 (634)
Q Consensus 541 ~~l~l~W~~~~~ 552 (634)
+.|++.|.+...
T Consensus 68 ~~l~V~~a~~~~ 79 (88)
T 1wg1_A 68 KDLIVQLQPTDA 79 (88)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEEcCCCc
Confidence 999999976544
No 340
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=93.03 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=64.0
Q ss_pred cceEEEcCCCCCCCCCHHHH----HHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 464 PTAFRIMPPLPVGFADVAVL----KEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L----~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
.++|+| ++||..++ +++| +++|.+||+|.+|.+.... .+ .++|||+|.++.+|++|+. +|..
T Consensus 29 ~~~LfV-~nL~~~~~-e~~L~~~L~~~F~~~G~I~~v~i~~~~---------~~-rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 29 SQVVLI-TNINPEVP-KEKLQALLYALASSQGDILDIVVDLSD---------DN-SGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CSEEEE-ESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEECCCC---------SS-CCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCEEEE-eCCCCCCC-HHHHHHHHHHHhccCCCeEEEEeccCC---------Cc-CCEEEEEECCHHHHHHHHHHHCCCE
Confidence 468999 89999997 6655 4799999999999885321 12 2799999999999999985 6999
Q ss_pred cCCceeEEEEeCCCC
Q 048615 538 WQGHDLQFTWLMPSS 552 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~ 552 (634)
|.|+.|++.|..+..
T Consensus 97 l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 97 FQGNPLVITFSETPQ 111 (127)
T ss_dssp CTTSCCEEEECCCCC
T ss_pred eCCCEEEEEEccCcc
Confidence 999999999987654
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.80 E-value=1e-08 Score=92.66 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
...++|+| ++| .++ +++|+++|.+||+|.+|.+.... ++|||+|.++.+|++|+. +|..|.
T Consensus 37 ~~~~~lfV-gnl--~~t-e~~L~~~F~~~G~I~~v~i~~~k-------------g~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYV-YGE--DMT-PTLLRGAFSPFGNIIDLSMDPPR-------------NCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEE-ECS--SCC-HHHHHHHHSTTCCCSCEEEETTT-------------TEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEE-cCC--CCC-HHHHHHHHHccCCEEEEEEeCCC-------------CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34689999 555 455 99999999999999999997544 799999999999999984 699999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+....
T Consensus 100 g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 100 SVQLKVNIARKQPML 114 (121)
T ss_dssp SCBCEEEECCSSCC-
T ss_pred CeEEEEEEeCCCCCC
Confidence 999999998877544
No 342
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.79 E-value=7e-10 Score=96.11 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=58.1
Q ss_pred ccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 83 AAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 83 ~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
...+++.+..+|.++|.|.. ..+.++.++.++|||||+|.+.++| +||. |||..|.|++|+|.++.++.
T Consensus 27 ~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 27 PNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred CCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 34577788888888888776 4566666667799999999999999 9998 99999999999999998654
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.28 E-value=5.9e-10 Score=99.27 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCccccccccccceeeecceee--------eeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKN--------RSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~--------~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
+....+++.+..+|.++|.|.. +..+.++.++.++|||||+|.+.++| +||..|||..|.|++|+|.++.+
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 3345677888899999998877 66777776677899999999999999 99999999999999999999987
Q ss_pred cC
Q 048615 152 KN 153 (634)
Q Consensus 152 k~ 153 (634)
+.
T Consensus 95 ~~ 96 (116)
T 2lcw_A 95 RA 96 (116)
Confidence 65
No 344
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=7.4e-10 Score=99.97 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=59.2
Q ss_pred CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|..+|.|..+..+..+.++.++|||||+|.+.++| +||. |||..|+||+|+|.++..+.
T Consensus 33 Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 33 LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 344567788888888888876655555566677899999999999999 9998 99999999999999887543
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.77 E-value=4.6e-09 Score=92.90 Aligned_cols=67 Identities=15% Similarity=0.020 Sum_probs=55.5
Q ss_pred ccccccccceeeecceeeeecccccc-CCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 85 VSQNTSMSVWGRIGSSKNRSNVKEKI-DATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~V~~~~~~k~k~-~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
..++.++..|+++|.|..+.+++++. ++.++|||||+|.+.++| +|+..|||+.+.||+|+|.++..
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 35667777888888877777776543 346799999999999999 99999999999999999998864
No 346
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.5e-08 Score=87.52 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHcCCccCCceeEEEEeCCCCCC
Q 048615 476 GFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLSGKSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 476 ~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~g~~~~g~~l~l~W~~~~~~~ 554 (634)
+++ +++|+++|.+||+|..|.+.... .++|||+|.++.+|++|+..+..+.|+.|++.|..+....
T Consensus 28 ~~t-e~~L~~~F~~~G~V~~v~i~~~~------------rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 28 GYS-KDVLLRLLQKYGEVLNLVLSSKK------------PGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp SCC-HHHHHHHHHTTSCEEEEEEESSS------------SSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCCC
T ss_pred CCC-HHHHHHHHHhcCCEEEEEEccCC------------CCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCCC
Confidence 344 89999999999999999987321 2799999999999999999888888999999998877654
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.76 E-value=2.3e-09 Score=96.22 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=56.4
Q ss_pred CCccccccccccceeeecc---eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGS---SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~---V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|..+|. |..++++.++. +.++|||||+|.+.++| +||. |||..|+||+|+|.++..+.
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 3445677777777776665 56666666655 67799999999999999 9997 99999999999999886543
No 348
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=4e-09 Score=93.95 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=58.8
Q ss_pred ccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 76 PVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 76 ~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
.|+| +....+++.+..+|..+ .|..+.++.++. +.++|||||+|.+.++| +|| .|||..|+||.|+|..+..+
T Consensus 20 ~V~n-Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 20 SVHG-MPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp EEEC-CCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred EEeC-CCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3444 44567788888888888 666666676665 67899999999999999 999 79999999999999887653
No 349
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.2e-08 Score=86.65 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccC
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQ 539 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~ 539 (634)
....++|+| ++||..++ +++|++||.+||. .+|.+.-+.. -....++||+|.+..+|++|+. ++..|.
T Consensus 12 ~~~~~~l~V-~nLp~~~t-e~~l~~~F~~~G~-~~v~i~~d~~--------g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHM-RGLPYRAT-ENDIYNFFSPLNP-MRVHIEIGPD--------GRVTGEADVEFATHEDAVAAMAKDKANMQ 80 (102)
T ss_dssp CSSSCEEEE-ESCCTTCC-HHHHHHSSCSCCC-SEEEEEESSS--------SCEEEEEEEECSSSHHHHHHHTTSSCCSS
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHHcCc-eEEEEEECCC--------CCEeeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 344689999 89999997 9999999999994 4888764321 1112689999999999999984 488999
Q ss_pred CceeEEEEeCCCCCC
Q 048615 540 GHDLQFTWLMPSSSS 554 (634)
Q Consensus 540 g~~l~l~W~~~~~~~ 554 (634)
|+.|++.|..+...+
T Consensus 81 gr~i~V~~~~~~~~~ 95 (102)
T 1wez_A 81 HRYVELFLNSTAGTS 95 (102)
T ss_dssp SSCCEEEEECCCCCC
T ss_pred CcEEEEEECCCCCCC
Confidence 999999998776654
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.75 E-value=2.2e-08 Score=95.66 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
+++..+|+| ++|+..++ +++|++.|.+||+|.+|.+.... ...++||+|.++.+|++|+. +|..|
T Consensus 43 ps~vl~l~V-gNL~~~vt-ed~L~~~Fs~fG~V~~V~i~~k~-----------~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 43 QSPVLRIIV-ENLFYPVT-LDVLHQIFSKFGTVLKIITFTKN-----------NQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CCCEEEEEE-CSCCSCCC-HHHHHHHHHHHSCEEEEEEEESS-----------SCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred CCceEEEEE-eCcCCCCC-HHHHHHHHHhcCCEEEEEEEeCC-----------CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 567788999 89999997 99999999999999999985432 01589999999999999996 59999
Q ss_pred CC--ceeEEEEeCCCC
Q 048615 539 QG--HDLQFTWLMPSS 552 (634)
Q Consensus 539 ~g--~~l~l~W~~~~~ 552 (634)
.| +.|+|.|.++..
T Consensus 110 ~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 110 YNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSSCSCEEEEECSSSS
T ss_pred cCCCcEEEEEEecCCc
Confidence 54 999999998764
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.73 E-value=2e-08 Score=84.04 Aligned_cols=72 Identities=15% Similarity=0.346 Sum_probs=63.9
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcc----c-------ceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHH
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSY----G-------DLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAE 529 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~f----G-------ei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE 529 (634)
+...++|+| ++||..++ +++|+++|.+| | +|.+|.+.... ++|||+|.+..+|+
T Consensus 3 ~~~~~~l~V-~nLp~~~t-~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-------------g~afV~f~~~~~a~ 67 (87)
T 2hzc_A 3 LGSARRLYV-GNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-------------NFAFLEFRSVDETT 67 (87)
T ss_dssp SGGGGEEEE-ESCCTTCC-HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-------------SEEEEEESSHHHHH
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-------------cEEEEEcCCHHHHH
Confidence 345789999 89999997 99999999999 8 99999988665 79999999999999
Q ss_pred HHH-HcCCccCCceeEEEE
Q 048615 530 RAF-LSGKSWQGHDLQFTW 547 (634)
Q Consensus 530 ~A~-~~g~~~~g~~l~l~W 547 (634)
+|+ ++|..|.|+.|++.+
T Consensus 68 ~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 68 QAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHGGGTTCEETTEECEEEC
T ss_pred HHHhcCCCEECCeEEEEeC
Confidence 998 249999999999874
No 352
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.73 E-value=2.3e-09 Score=99.24 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=57.6
Q ss_pred CCccccccccccceeeecc---eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGS---SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~---V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
+....+++++..+|..+|. |..+.++.++. +.++|||||+|.+.++| +||. |||..|+||+|+|.++..+
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 4556677888888887776 55666666665 67899999999999999 9998 9999999999999988654
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.73 E-value=2.6e-08 Score=88.83 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQ 539 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~ 539 (634)
...++|+| ++||..++ +++|+++|.+||+|.+|.+..+ +++||+|.+..+|++|+. +|..|.
T Consensus 14 r~~~~l~V-~nLp~~~t-~~~l~~~F~~~G~v~~~~i~~~--------------g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 14 RSENRVVV-SGLPPSGS-WQDLKDHMREAGDVCYADVYRD--------------GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp ---CCEEE-EECCSSCC-TTHHHHHHGGGSCEEEEEECTT--------------SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCCcEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEecC--------------CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34689999 89999997 8999999999999999998643 589999999999999995 699999
Q ss_pred Cce-----eEEEEeCCCCC
Q 048615 540 GHD-----LQFTWLMPSSS 553 (634)
Q Consensus 540 g~~-----l~l~W~~~~~~ 553 (634)
|+. +++.+-.+..+
T Consensus 78 gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 78 SHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp CTTSCCCBCEEEECC----
T ss_pred CcEeeeEEEEeccCCCCCC
Confidence 988 77777665544
No 354
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.72 E-value=1.9e-09 Score=94.87 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=57.2
Q ss_pred CCccccccccccceeeecc---eeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 81 GTAAVSQNTSMSVWGRIGS---SKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~---V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+....+++.+..+|..+|. |..+.++.++. +.++|||||+|.+.++| +||. |||..|+||.|+|.++.++.
T Consensus 19 Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 3445677777777777665 66666676666 67899999999999999 9998 99999999999999887543
No 355
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=3.6e-08 Score=89.55 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=66.0
Q ss_pred CCCCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCC-HHHHHHHHHcCC--C-ccCCeEEEEEee
Q 048615 174 KALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSK-REEAEAALKSPD--A-VMGNRFIKLWWA 247 (634)
Q Consensus 174 ~~~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s-~e~A~~Ai~~ln--g-~l~gR~IkV~wa 247 (634)
+.++.|||+||+++.++.++|+++|++||.|..|.+.++...|||.|.+ ..+|..|+..++ + .|.|..+++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4479999999999328999999999999999999999999999999999 899999999985 3 789988887654
No 356
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.72 E-value=3.5e-08 Score=95.09 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=68.1
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..++|+| ++||..++ +++|+++|.+||+|.+|.+..+.. ..++ ++|||+|.++.+|++|+. +|..|.|
T Consensus 87 ~~~~l~V-~nLp~~~t-e~~L~~~F~~~G~I~~v~i~~d~~-------g~~k-G~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 87 TGAKLLV-SNLDFGVS-DADIQELFAEFGTLKKAAVDYDRS-------GRSL-GTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TCEEEEE-ECCCSCCC-HHHHHHHHHHTSCCSEEEECCCTT-------SSCS-CCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCEEEE-eCCCCCCC-HHHHHHHHHhcCCeEEEEEEECCC-------CCEe-eEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3689999 89999997 999999999999999999875431 1122 789999999999999996 6999999
Q ss_pred ceeEEEEeCCCC
Q 048615 541 HDLQFTWLMPSS 552 (634)
Q Consensus 541 ~~l~l~W~~~~~ 552 (634)
+.|+|.|..+..
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 999999987653
No 357
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.69 E-value=2.2e-08 Score=100.35 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=66.6
Q ss_pred cccCCCcceEEEcCCCCCCCCCHHHHHHHhhccc--ceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--
Q 048615 458 YKLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYG--DLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-- 533 (634)
Q Consensus 458 ~~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fG--ei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-- 533 (634)
+..+.+.++|+| ++||..++ +++|+++|.+|| +|.+|.|..+.. .-.++ +++||+|.+..+|++|+.
T Consensus 62 ~~~~~~~~~lfV-gnL~~~~t-e~~L~~~F~~~G~~~v~~v~i~~d~~------tg~sk-GfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 62 YTYTGKRIALYI-GNLTWWTT-DEDLTEAVHSLGVNDILEIKFFENRA------NGQSK-GFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp -------CEEEE-ESCCTTCC-HHHHHHHHHTTTCCCEEEEEEEECTT------TCCEE-EEEEEEESCTTHHHHHHTTS
T ss_pred ccCCCCccEEEE-eCCCCCCC-HHHHHHHHHHHCCcceEEEEEEecCC------CCccc-eEEEEEECCHHHHHHHHHHc
Confidence 445668899999 89999997 999999999999 999999865431 01122 699999999999999995
Q ss_pred cCCccCCceeEEEEeCCC
Q 048615 534 SGKSWQGHDLQFTWLMPS 551 (634)
Q Consensus 534 ~g~~~~g~~l~l~W~~~~ 551 (634)
+|..|.|+.|+|.|..+.
T Consensus 133 ng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 133 PKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp TTSCBTTBCCEEEECCHH
T ss_pred CCCeECCEEeEEEECCCC
Confidence 699999999999998654
No 358
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.68 E-value=6.2e-09 Score=91.79 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=49.9
Q ss_pred cccccce-eeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccC
Q 048615 88 NTSMSVW-GRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 88 ~~~~svf-g~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a 149 (634)
+.++..| +++|.|..+.+++++. +.++|||||+|.+.++| +|+..|||+.+.||+|+|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3344455 7777777776666554 46799999999999999 999999999999999999875
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.67 E-value=1.5e-08 Score=89.53 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=55.8
Q ss_pred cccccccceeeecceeeeeccccccC--CCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKID--ATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~~--~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
..++++..|+++|.|..+.+++++.+ ..++|||||+|.+.++| +|+..|||+.+.||+|+|.+...
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 45668888888888888888776643 24689999999999999 99999999999999999997653
No 360
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.65 E-value=2e-08 Score=109.94 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred CcccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 74 DLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 74 ~~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
.++|.| +....++..+..+|..+|.|..+.++.++.++.++|||||+|.+.++| .||..|||..|.|++|.|.++.++
T Consensus 104 ~lfV~n-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 104 TLFVAR-VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 334444 445567888889999999988888888887788899999999999999 999999999999999999999765
Q ss_pred C
Q 048615 153 N 153 (634)
Q Consensus 153 ~ 153 (634)
.
T Consensus 183 ~ 183 (437)
T 3pgw_S 183 T 183 (437)
T ss_pred C
Confidence 4
No 361
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.64 E-value=2.9e-08 Score=91.47 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEE--------EecCCccccCCCCCCCCCCceEEEEecChHHHHHHH
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASV--------ELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF 532 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv--------~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~ 532 (634)
....++|+| ++||..++ +++|+++|.+||+|.+| .+.... .+ .++|||+|.+..+|++|+
T Consensus 42 ~~~~~~l~V-~nLp~~~t-e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g---------~~-~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 42 GEPNCRIYV-KNLAKHVQ-EKDLKYIFGRYVDFSSETQRIMFDIRLMKEG---------RM-KGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp CSCCSEEEE-EEECTTCC-HHHHHHHHGGGCCTTCHHHHHHCEEEEEEET---------TT-EEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEE-eCCCCCCC-HHHHHHHHHHhCCcccccccceeeEEeccCC---------Cc-ccEEEEEeCCHHHHHHHH
Confidence 344688999 89999997 99999999999999874 222111 11 279999999999999998
Q ss_pred H--cCCccCCceeEEEEeCCCCCC
Q 048615 533 L--SGKSWQGHDLQFTWLMPSSSS 554 (634)
Q Consensus 533 ~--~g~~~~g~~l~l~W~~~~~~~ 554 (634)
. +|..|.|+.|.+.|..+..+.
T Consensus 110 ~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 110 KEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHHTTBEETTEECEEEECCCSCC-
T ss_pred HHhCCCEeCCcEEEEEECCCCCCc
Confidence 5 699999999999998776543
No 362
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.62 E-value=7.4e-09 Score=96.24 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=62.2
Q ss_pred cccccCCCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 75 LPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 75 ~~v~n~~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
+.|+| +....+++++..+|..+| +..+.++.++. +.++|||||+|.+.++| +|| .||+..|.||.|+|..+....
T Consensus 49 lfV~n-Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 49 VHMRG-LPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp EECCS-CCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEEeC-CCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 34444 556778889999999999 55677777765 68899999999999999 999 899999999999999887654
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.61 E-value=1.1e-07 Score=86.65 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCc-eEEEEecChHHHHHHHH--cCCcc
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNC-QVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~-~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
++...|+| ++|+..++ +++|+++|.+||+|.+|.+.... + .|||+|.+..+|++|+. +|..|
T Consensus 23 s~vl~l~V-~NL~~~vt-~~~L~~~Fs~yG~V~~v~i~~~~-------------Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 23 NKVLLLSI-QNPLYPIT-VDVLYTVCNPVGKVQRIVIFKRN-------------GIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CSEEEEEE-ESCCSCCC-HHHHHHHHTTTSCEEEEEEEESS-------------SEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEE-cCcCCCCC-HHHHHHHHHhcCCEEEEEEEeCC-------------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34455678 89999997 99999999999999999986421 5 59999999999999985 69999
Q ss_pred CC--ceeEEEEeCCCC
Q 048615 539 QG--HDLQFTWLMPSS 552 (634)
Q Consensus 539 ~g--~~l~l~W~~~~~ 552 (634)
.| +.|+|.|.++..
T Consensus 88 ~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 88 YAGCCTLKIEYARPTR 103 (124)
T ss_dssp BTTBSEEEEECCSCSC
T ss_pred cCCCeEEEEEEecCCc
Confidence 76 699999988775
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.60 E-value=9.1e-09 Score=94.39 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=56.4
Q ss_pred CccccccccccceeeecceeeeeccccccCCCcCceEEEEcCC----HHH----H-HHHh--ccCCceeCCEEEEEccCc
Q 048615 82 TAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENET----KED----R-EALP--SLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 82 ~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~----~e~----A-~Ai~--~mnG~~l~GR~I~V~~a~ 150 (634)
++..++..++.+|..+|+|..+..+.++.++.++|||||+|.+ .++ | +|+. .|||..|+||+|+|..-.
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 4566777788888888888888888888888999999999995 322 6 8998 899999999999998654
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.60 E-value=7.2e-08 Score=94.05 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccCC
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQG 540 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~g 540 (634)
...++|+| ++||..++ +++|++||.+||+|.+|.+..... ....++|||+|.+..+|++|+.. +..|.|
T Consensus 107 ~~~~~l~V-~nLp~~~t-~~~L~~~F~~~G~v~~v~i~~~~~--------~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 107 VKNRSVYI-KGFPTDAT-LDDIKEWLEDKGQVLNIQMRRTLH--------KAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HHHTEEEE-ECCCTTCC-HHHHHHHHTTSCCEEEEEEEECTT--------CCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred cccCEEEe-cCCCCcCC-HHHHHHHHhcCCCEEEEEEEECCC--------CCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 34689999 89999987 999999999999999999875431 11137999999999999999975 778999
Q ss_pred ceeEEEEeCC
Q 048615 541 HDLQFTWLMP 550 (634)
Q Consensus 541 ~~l~l~W~~~ 550 (634)
+.|.+.|...
T Consensus 177 r~l~V~~~~~ 186 (193)
T 2voo_A 177 TDLLILFKDD 186 (193)
T ss_dssp EECEEEETTT
T ss_pred EEEEEEEhHH
Confidence 9999999654
No 366
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.59 E-value=9.9e-08 Score=87.75 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCcc
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSW 538 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~ 538 (634)
-++...|+| ++|+..++ +++|++.|.+||+|.+|.+.... +...|||.|.+..+|++|+. +|..|
T Consensus 25 ps~VL~I~V-~NL~~~vt-e~~L~~lFs~yG~V~~V~i~~~~-----------~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 25 QSPVLRIIV-ENLFYPVT-LDVLHQIFSKFGTVLKIITFTKN-----------NQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp CCSEEEEEE-ESCCSCCC-HHHHHHHHTTSSCEEEEEEEEET-----------TEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEE-CCCCCCCC-HHHHHHHHhCcCCEEEEEEEcCC-----------CCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 477788999 89999997 99999999999999999986532 11349999999999999984 69999
Q ss_pred CC--ceeEEEEeCCCC
Q 048615 539 QG--HDLQFTWLMPSS 552 (634)
Q Consensus 539 ~g--~~l~l~W~~~~~ 552 (634)
-| +.|+|.|.++..
T Consensus 92 ~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 92 YNACCTLRIDFSKLTS 107 (130)
T ss_dssp ETTEEEEEEEECSCSS
T ss_pred cCCCcEEEEEecCCCc
Confidence 77 899999998764
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.4e-08 Score=88.56 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=52.9
Q ss_pred ccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcccC
Q 048615 87 QNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQKN 153 (634)
Q Consensus 87 ~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k~ 153 (634)
++.+..+|.++|.|..+.+ .++. ++|||||+|.+.++| +|+..|||..|.||+|+|.++.++.
T Consensus 40 e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred HHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 4677888888888777743 3332 599999999999999 9999999999999999999987654
No 368
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.56 E-value=1.6e-07 Score=85.74 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhccccee--EEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCcc
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLA--SVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSW 538 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~--sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~ 538 (634)
+..++|+| ++||..++ +++|+++|.+| .|. +|.+..+.. -...+++||+|.+..+|++|+.. +..|
T Consensus 40 ~~~~~lfV-gnLp~~~t-e~dL~~~F~~~-~i~~~~v~i~~d~~--------GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRL-RGLPFGCT-KEEIVQFFSGL-EIVPNGITLPVDPE--------GKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp SSCCEEEE-ECCCTTCC-HHHHHHHTTTS-CEEEEEEECCCCSS--------SSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CCCCEEEE-eCCCCCCC-HHHHHHHHhcC-CceeeEEEEEECCC--------CCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 45678999 89999997 99999999999 677 888875431 11237999999999999999864 7889
Q ss_pred CCceeEEEEeC
Q 048615 539 QGHDLQFTWLM 549 (634)
Q Consensus 539 ~g~~l~l~W~~ 549 (634)
.|+.|++.+..
T Consensus 109 ~gR~I~V~~a~ 119 (126)
T 2hgm_A 109 GHRYIEVFKSS 119 (126)
T ss_dssp TTBCCCCEEEC
T ss_pred CCEEEEEEECC
Confidence 99999988764
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.54 E-value=2e-08 Score=90.79 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=53.6
Q ss_pred cccccccceeeecceeeeecccccc----CCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 86 SQNTSMSVWGRIGSSKNRSNVKEKI----DATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 86 s~~~~~svfg~Ig~V~~~~~~k~k~----~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.+++++..|+++|.|..+.+++++. ++.++||+||+|.+.++| +|+..|||+++.||+|+|.++.
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 3456777778888877777776654 235679999999999999 9999999999999999999764
No 370
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=8.5e-08 Score=83.04 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCCCEEEEeCCCCC-----CCC---HHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEE
Q 048615 174 KALRTLFVNNVPLK-----SNR---REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKL 244 (634)
Q Consensus 174 ~~~~tLfVgnLp~d-----~~t---e~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV 244 (634)
++..||+|.-++.. +.+ -.+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |+| .++||.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 34579999887631 223 25689999999999999999987 9999999999999999 999 899999999
Q ss_pred Eeec
Q 048615 245 WWAN 248 (634)
Q Consensus 245 ~wak 248 (634)
.+-.
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9754
No 371
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.7e-08 Score=91.89 Aligned_cols=70 Identities=10% Similarity=-0.016 Sum_probs=54.1
Q ss_pred CCccccccccccceeeecce----eeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCccc
Q 048615 81 GTAAVSQNTSMSVWGRIGSS----KNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQK 152 (634)
Q Consensus 81 ~~~~~s~~~~~svfg~Ig~V----~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~k 152 (634)
+....+++++..+|..+|.| ..+.++.++ ++.++|||||+|.+.++| +||.. |+..|+||.|.|..+..+
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred CCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 44566778888888777643 344445543 567799999999999999 99975 999999999999877654
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.48 E-value=4.6e-08 Score=87.91 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred ccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCcc
Q 048615 85 VSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAIQ 151 (634)
Q Consensus 85 ~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~~ 151 (634)
..+++++..|+++|.|..+.+++.. .+|||||+|.+.++| +|+..|||++|+||+|+|.++..
T Consensus 29 el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 29 EIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 3455667778888887777665543 389999999999999 99999999999999999998754
No 373
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.3e-07 Score=81.35 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=50.1
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
.+++|+| ++||..++ +++|+++|.+||+|. +.+...... ...-...++|||+|.+..+|++|+..
T Consensus 7 ~~~~lfV-gnLp~~~t-e~~L~~~F~~~G~i~-~~~~~~~~~----~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFV-GGLPPDID-EDEITASFRRFGPLV-VDWPHKAES----KSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEE-ECCCTTCC-HHHHHHHTTTTCCCC-EECTTSSSS----CCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEE-cCCCCCCC-HHHHHHHHHhcCCEE-EEEeecCCC----CCCCCcccEEEEEECCHHHHHHHHHh
Confidence 4688999 89999997 999999999999999 665543210 00011237999999999999999863
No 374
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=4.2e-06 Score=72.66 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCCcceEEEcCCCCCCCCCHHH----HHHHhhcc-cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--
Q 048615 461 DNRPTAFRIMPPLPVGFADVAV----LKEHFSSY-GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-- 533 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~----L~~hF~~f-Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-- 533 (634)
.+..|.|+| ++||..++ ++. |++.|.+| |.|.+|. . +.|||.|.+..+|++|+.
T Consensus 6 ~p~~T~lYV-~NL~~~~~-~~~lk~~L~~lF~~yGG~Vl~Vt----g-------------G~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 6 SGCHTLLYV-YNLPANKD-GKSVSNRLRRLSDNCGGKVLSIT----G-------------CSAILRFINQDSAERAQKRM 66 (96)
T ss_dssp CCSSEEEEE-ESCCTTSC-HHHHHHHHHHHHHTTTCCEEECC----T-------------TCEEEEESSHHHHHHHHHHH
T ss_pred CCcceEEEE-eCCCCcCC-HHHHHHHHHHHHHHcCCeeEEEe----c-------------CEEEEEECCHHHHHHHHHHh
Confidence 345566999 89999997 666 66999999 5998882 1 689999999999999984
Q ss_pred cCCccCCceeEEEEeCCCCCCC
Q 048615 534 SGKSWQGHDLQFTWLMPSSSSN 555 (634)
Q Consensus 534 ~g~~~~g~~l~l~W~~~~~~~~ 555 (634)
+|..+-|+.+++.|.+....-.
T Consensus 67 ~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 67 ENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TTCCSSSSCCEEESSCCSCCCC
T ss_pred cCCccCCceEEEEecCCCccee
Confidence 6999999999999988765543
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.22 E-value=9.6e-07 Score=87.09 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=53.9
Q ss_pred CHHHHHHhhccCCCEEEEEEecC----------CCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 190 RREALLSHFQKFGEVVDIYIPLN----------SERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 190 te~~L~~~FskfG~I~~v~v~~d----------kg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
.+++|++.|++||.|.+|.|+.+ +|++||+|.+.++|.+|++.|+| .++||.|+|.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 57889999999999999999732 36999999999999999999999 8999999999984
No 376
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=6e-06 Score=73.13 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccC-----CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEE
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKF-----GEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLW 245 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fskf-----G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~ 245 (634)
.++|-+-|||. .+++..++.+...| |.|++|.+.+|.+-|+|+|.+...|.+|.-+++| .|.||.|+|-
T Consensus 21 ~rtiaL~~ipD-tvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSD-KVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCT-TCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCC-CCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 57999999999 69999999999999 9999999999999999999999999999999999 8999999985
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.10 E-value=1.4e-06 Score=92.39 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=59.8
Q ss_pred ccccCCCCCCcccccC-CCccccccccccceeeecceeeeeccccccCCCcCceEEEEcCCHHHH-HHHhccCCceeC--
Q 048615 65 LRASDSADNDLPVRNA-GTAAVSQNTSMSVWGRIGSSKNRSNVKEKIDATLNSLDYLENETKEDR-EALPSLQGSYRR-- 140 (634)
Q Consensus 65 ~~~~~~~~~~~~v~n~-~~~~~s~~~~~svfg~Ig~V~~~~~~k~k~~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~-- 140 (634)
+...+.+.+.+.|+|. ++...+++++..+|+++|.|..+.... +||||||+|.+.++| +||..|||+.+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 3333444456677775 355689999999999999988775543 389999999999999 999999999882
Q ss_pred -CE--EEEEccC
Q 048615 141 -GK--RIIEGDA 149 (634)
Q Consensus 141 -GR--~I~V~~a 149 (634)
|+ +|+|.+.
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 44 4666654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.90 E-value=2.4e-06 Score=84.18 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=50.6
Q ss_pred ccccccceeeecceeeeecccccc----CCCcCceEEEEcCCHHHH-HHHhccCCceeCCEEEEEccCc
Q 048615 87 QNTSMSVWGRIGSSKNRSNVKEKI----DATLNSLDYLENETKEDR-EALPSLQGSYRRGKRIIEGDAI 150 (634)
Q Consensus 87 ~~~~~svfg~Ig~V~~~~~~k~k~----~~~s~GfgFVeF~~~e~A-~Ai~~mnG~~l~GR~I~V~~a~ 150 (634)
.+.++..|.++|.|..+.+++... ++.++||+||+|.+.++| +|+..|||+++.||+|+|.+..
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 344566666777776666654333 336789999999999999 9999999999999999998764
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=3.8e-05 Score=69.64 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=57.1
Q ss_pred cceEEEcCCCCCC-CCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecC-hHHHHHHHHc----CCc
Q 048615 464 PTAFRIMPPLPVG-FADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTT-RRSAERAFLS----GKS 537 (634)
Q Consensus 464 ~t~l~V~~~l~~~-~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~t-R~~AE~A~~~----g~~ 537 (634)
...|+| ++|+.. .+ +++|++.|.+||+|.+|.+..+. ..+||.|.+ -.+|++|+.. |..
T Consensus 18 G~il~v-~~l~~~~~s-redLke~F~~~G~V~~Vd~~~g~-------------~tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 18 GCLLKF-SGDLDDQTC-REDLHILFSNHGEIKWIDFVRGA-------------KEGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCEEEE-EESCCSSCC-HHHHHHHTCSSCCEEEEECCTTC-------------SEEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred CeEEEE-ecCCCCcCC-HHHHHHHHHhcCCEEEEEEecCC-------------CEEEEEECCChHHHHHHHHHhhcCCcE
Confidence 456777 788888 65 99999999999999999998876 579999999 7888888764 778
Q ss_pred cCCceeEEE
Q 048615 538 WQGHDLQFT 546 (634)
Q Consensus 538 ~~g~~l~l~ 546 (634)
|+|..+++.
T Consensus 83 i~g~~~~~e 91 (121)
T 1owx_A 83 LRNKEVTWE 91 (121)
T ss_dssp TTSSSEEEE
T ss_pred EeCcEEEEE
Confidence 888776654
No 380
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=3e-05 Score=69.93 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=53.9
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCccCC-
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKSWQG- 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~~~g- 540 (634)
..+.|.|-|.-|. +...+..||.+||+|..+...... ++..|+|.+|.+|+||+.. |..|.|
T Consensus 23 ~~~wVtVFGFp~~---~~~~VL~~F~~~G~Iv~~~~~~~~-------------NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQA---SASYILLQFAQYGNILKHVMSNTG-------------NWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGG---GHHHHHHHHHTTSCEEEEEECSSS-------------SEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHhhCcEEEeccCCCC-------------CeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 4888999765333 357999999999999999874443 8999999999999999976 666653
Q ss_pred ceeEEEEe
Q 048615 541 HDLQFTWL 548 (634)
Q Consensus 541 ~~l~l~W~ 548 (634)
-.|=+.|.
T Consensus 87 ~mIGV~p~ 94 (119)
T 1wwh_A 87 IMIGVKPC 94 (119)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEC
Confidence 44445554
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=4.9e-05 Score=65.39 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=50.5
Q ss_pred HHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHH-HcCCccCCceeEEEEeCCC
Q 048615 480 VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAF-LSGKSWQGHDLQFTWLMPS 551 (634)
Q Consensus 480 ~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~-~~g~~~~g~~l~l~W~~~~ 551 (634)
..+|.++|.+||+|..|++..+. +||+|.+..+|-+|+ ++|..+.|++|++.+-++.
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~---------------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDK---------------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSS---------------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHHhCCCeEEEEEecCC---------------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 47899999999999999998754 899999999999998 4699999999999986654
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=5.5e-05 Score=65.48 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.4
Q ss_pred HHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH-cCCccCCceeEEEEeCC
Q 048615 481 AVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-SGKSWQGHDLQFTWLMP 550 (634)
Q Consensus 481 ~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-~g~~~~g~~l~l~W~~~ 550 (634)
.+|.++|.+||+|..|++..++ ++|+|.+-.+|-+|+. +|..+.|+.|++.|-++
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~---------------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ---------------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE---------------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc---------------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence 6799999999999999998653 9999999999999984 69999999999998543
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00018 Score=63.30 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=63.0
Q ss_pred CEEEEeCCCCCCCC----HHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccCCeEEEEEeec
Q 048615 177 RTLFVNNVPLKSNR----REALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMGNRFIKLWWAN 248 (634)
Q Consensus 177 ~tLfVgnLp~d~~t----e~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~gR~IkV~wak 248 (634)
++|+|.||+.+-.. .+.++.+|..|+++......+.-....|.|.+.++|.+|...|++ .++|+.|+|+|+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 58999999874223 256799999999999888887777899999999999999999999 7999999999997
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00096 Score=59.15 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCcceEEEcCCCCCCCCCHHHHHHHhhcc-----cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--
Q 048615 461 DNRPTAFRIMPPLPVGFADVAVLKEHFSSY-----GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL-- 533 (634)
Q Consensus 461 Dnr~t~l~V~~~l~~~~~~~~~L~~hF~~f-----Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~-- 533 (634)
++.+++|.|. +||+.++ ++-+|..+..| |+|..|.+.++- ..|+|.|.+...|=||++
T Consensus 18 ~~~~rtiaL~-~ipDtvn-darIr~lve~~~~i~~g~i~KI~L~pDH-------------~GAivef~d~~~AgKasLaL 82 (117)
T 2l9w_A 18 KELETLICLF-PLSDKVS-PSLICQFLQEEIHINEKDIRKILLVSDF-------------NGAIIIFRDSKFAAKMLMIL 82 (117)
T ss_dssp TTTTSCEEEE-CCCTTCC-HHHHHHHHHHHTCCCTTTCSEEEEETTT-------------TEEEEECSCHHHHHHHHHHH
T ss_pred ccCCcEEEEe-cCCCCCC-HHHHHHHHhhhhccCccceeEEEEecCC-------------CceEEEEccchhhHHHHhhc
Confidence 5668899995 8999997 89999999999 999999999987 789999999999999985
Q ss_pred cCCccCCceeEEE
Q 048615 534 SGKSWQGHDLQFT 546 (634)
Q Consensus 534 ~g~~~~g~~l~l~ 546 (634)
+|..|.|+.|++.
T Consensus 83 ~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 83 NGSQFQGKVIRSG 95 (117)
T ss_dssp SSEEETTEEEEEE
T ss_pred CCeeecCeEEEec
Confidence 5999999999875
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0033 Score=55.07 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhcc-C----CCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCCccCCeEEEEEeec
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQK-F----GEVVDIYIPLNSERAFVQFSKREEAEAALKSPDAVMGNRFIKLWWAN 248 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~Fsk-f----G~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng~l~gR~IkV~wak 248 (634)
.++|.|.|||++ ++++.|.-+|+. . |.|..|.... +-|+|+|.+++.|++.++.-...|+|..|.|.-+.
T Consensus 8 ~~~I~V~~lPp~-~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 8 GVAVEVRGLPPA-VPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCEEEEESCCTT-SCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ccEEEEECCCCC-CChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 579999999996 999999999987 2 6899988766 78999999999999999998888999999997543
No 386
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.91 E-value=0.00093 Score=61.06 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=55.9
Q ss_pred ccCCCcceEEEcCCCCCCCCCHHHHHHHhhcccceeE-EEecCCccccCCC---CCC-C--CCCceEEEEecChHHHHHH
Q 048615 459 KLDNRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLAS-VELEDGEVLEGDN---GSD-A--SKNCQVRVSFTTRRSAERA 531 (634)
Q Consensus 459 ~lDnr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~s-v~~~~~~~~~~~~---~~~-~--~~~~~~~V~F~tR~~AE~A 531 (634)
-|-|..+.|.|=|. |... ...+.+||.+||+|.. +...+....-... ... | +-.++..|+|.++.+|.||
T Consensus 2 ~~~~~e~~VtVFGF-p~~~--~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA 78 (132)
T 3p3d_A 2 SLSNGELAILVFGY-PETM--ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA 78 (132)
T ss_dssp ------CEEEEECC-CGGG--HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH
T ss_pred CcccCceEEEEEec-CHHH--HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH
Confidence 36677888898765 5544 5789999999999943 2111100000000 000 0 0137999999999999999
Q ss_pred HH-cCCccCCceeEEEEeCCC
Q 048615 532 FL-SGKSWQGHDLQFTWLMPS 551 (634)
Q Consensus 532 ~~-~g~~~~g~~l~l~W~~~~ 551 (634)
+. +|..|.|..|=+.|+...
T Consensus 79 L~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 79 LLENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp HTTTTCEETTEECEEEECCHH
T ss_pred HHhCCeEeCcEEEEEEECCHH
Confidence 96 499999998888888643
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0083 Score=54.00 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCCC-ccC-CeEEEEEee
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPDA-VMG-NRFIKLWWA 247 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~lng-~l~-gR~IkV~wa 247 (634)
.+.|.|.+.|+. .-..+..+|++||.|++........+-.|.|.++.+|++||.. || +|+ +-.|-|.+.
T Consensus 24 ~~wVtVFGFp~~--~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQA--SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGG--GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHH--HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 579999999995 6788999999999999998755667999999999999999987 66 777 466777775
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.59 E-value=0.067 Score=46.87 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=61.1
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcc-----cceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc-CCc
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSY-----GDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS-GKS 537 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~f-----Gei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~-g~~ 537 (634)
-++|.|. +||+++. ++.|.-||++= |+|.+|+..+ +.|+|+|.+...|++.+.+ --.
T Consensus 8 ~~~I~V~-~lPp~~~-~e~L~LYFEn~rrsGGG~V~~v~~~~---------------~~AvItF~d~~va~rVL~k~~H~ 70 (104)
T 2dhx_A 8 GVAVEVR-GLPPAVP-DELLTLYFENRRRSGGGPVLSWQRLG---------------CGGVLTFREPADAERVLAQADHE 70 (104)
T ss_dssp CCEEEEE-SCCTTSC-HHHHHHHHHCTTTTCCCCEEEEEEET---------------TEEEEEESSHHHHHHHHTCSCCB
T ss_pred ccEEEEE-CCCCCCC-hhHheEEEeCCCcCCCceeeEEEEcC---------------CcEEEEEcChHHHHHHhcCCcce
Confidence 4689995 7899885 88999999982 6999999876 3699999999999999988 668
Q ss_pred cCCceeEEEEeCCCCC
Q 048615 538 WQGHDLQFTWLMPSSS 553 (634)
Q Consensus 538 ~~g~~l~l~W~~~~~~ 553 (634)
+++..|.+.=+.+..+
T Consensus 71 L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 71 LHGAQLSLRPAPPRAP 86 (104)
T ss_dssp SSSSBCEEEECCCCCC
T ss_pred ecCeEEEEEcCCCCCc
Confidence 8999999975555443
No 389
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.28 E-value=0.012 Score=53.78 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEE-EEec-------------------CCCeEEEEeCCHHHHHHHHHcCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDI-YIPL-------------------NSERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v-~v~~-------------------dkg~AFV~F~s~e~A~~Ai~~lng 235 (634)
...|.|.+.|++ ....+..+|++||.|++- .+.. ...+-.|+|+++.+|.+|+....-
T Consensus 7 e~~VtVFGFp~~--~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET--MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp -CEEEEECCCGG--GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred ceEEEEEecCHH--HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 468899999995 778889999999999872 1110 234789999999999999986444
Q ss_pred ccCCeEEEEEeec
Q 048615 236 VMGNRFIKLWWAN 248 (634)
Q Consensus 236 ~l~gR~IkV~wak 248 (634)
+|+|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 8999999998874
No 390
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.16 E-value=0.008 Score=65.99 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=43.5
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCC-eEEEEeCCHHHHHHHHHc
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSE-RAFVQFSKREEAEAALKS 232 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg-~AFV~F~s~e~A~~Ai~~ 232 (634)
.++|||. +|.+ +++.+|.++|++||.|.++.+..++| ||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~-~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEK-ISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC----CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCC-CCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4799997 6885 99999999999999999999998887 999999999999977655
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.58 E-value=0.26 Score=42.20 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC--------CeEEEEeCCHHHHHHHHHcCCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--------ERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk--------g~AFV~F~s~e~A~~Ai~~lng 235 (634)
++|.|++||+ +++++++.+.++....+........+ ..|||.|.+.+++..-.+.++|
T Consensus 2 ~KvVIRrLPP-~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 2 SKVVIRRLPP-TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp CEEEEEEECT-TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCC-CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 5899999999 59999999999999887766655433 2799999999999999999988
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.48 E-value=0.18 Score=43.81 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=42.3
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~l 233 (634)
..++| +.|.+ +...+|.++|+.||.| .|+.+- ---|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~e-wKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKE-WKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTT-CCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChh-hhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhc
Confidence 45555 99996 8999999999999954 343333 357999999999999999865
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.36 E-value=0.33 Score=42.18 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcC
Q 048615 178 TLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP 233 (634)
Q Consensus 178 tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~l 233 (634)
.||+-+.|.+ +...+|..+|+.||. ..|+.+- ---|||.|.+++.|..|+..+
T Consensus 7 HV~~l~FP~e-wKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHVTFPKE-WKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEECCTT-CCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEEECHHHHHHHHH
T ss_pred eEEEEeCChh-hhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhc
Confidence 3444499996 899999999999994 3444433 357999999999999999865
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.93 E-value=1.4 Score=38.64 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=59.6
Q ss_pred cceEEEcCCCCCCC-CC---HHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCc
Q 048615 464 PTAFRIMPPLPVGF-AD---VAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKS 537 (634)
Q Consensus 464 ~t~l~V~~~l~~~~-~~---~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~ 537 (634)
|++|.|. .|+..+ .+ .+.++++|.+|+++.+...-..- .-++|.|.+-.+|.+|-. ++..
T Consensus 5 pntLiit-nl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-------------RRirv~F~~~~~A~~AR~~Lh~~~ 70 (104)
T 1wey_A 5 SSGLIAC-VANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-------------KRVRINFSNPLSAADARLRLHKTE 70 (104)
T ss_dssp CCEEEEE-CCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-------------TEEEEECSSTTHHHHHHHTSTTSE
T ss_pred CceEEEe-cCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-------------eEEEEEeCChHHHHHHHHHhccce
Confidence 6788884 566643 32 26789999999999998876554 689999999999999975 5999
Q ss_pred cCCceeEEEEeCCC
Q 048615 538 WQGHDLQFTWLMPS 551 (634)
Q Consensus 538 ~~g~~l~l~W~~~~ 551 (634)
|.|..+++=.+.+.
T Consensus 71 f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 71 FLGKEMKLYFAQTL 84 (104)
T ss_dssp ETTEECEEECCCCS
T ss_pred ecCceeEEEecCCC
Confidence 99999999988743
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.91 E-value=0.97 Score=39.10 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=45.6
Q ss_pred CCEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCC--------CeEEEEeCCHHHHHHHHHcCCC
Q 048615 176 LRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNS--------ERAFVQFSKREEAEAALKSPDA 235 (634)
Q Consensus 176 ~~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dk--------g~AFV~F~s~e~A~~Ai~~lng 235 (634)
.-+|.|+.||+ .+|++++.+.++..-.+........+ ..|||.|.+.++...-.+..+|
T Consensus 9 ~~KvVIRrLPP-~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPP-GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCS-CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCC-CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 35899999999 59999988888876554332222211 2799999999999999999999
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=82.93 E-value=2.4 Score=36.76 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=38.9
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL 533 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~ 533 (634)
+..|.| ..|.+.. -.+|.+-|..||-| .|. +.|| .+|+|.|.+|..|..|+.
T Consensus 16 ~HVf~l--~FP~ewK-t~DI~~lFs~fggv-~I~-----WidD---------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV--TFPKEWK-TSDLYQLFSAFGNI-QIS-----WIDD---------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE--ECCTTCC-HHHHHHHHTTTCSC-CCE-----EEET---------TEEEEECSCHHHHHHHHH
T ss_pred CeEEEE--eCChhhh-hHHHHHHhhccCCE-EEE-----EEcC---------CeEEEEecCHHHHHHHHH
Confidence 444444 6788886 89999999999944 222 2223 489999999999999876
No 397
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=82.14 E-value=1.2 Score=29.35 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048615 343 KQELLDQKRNDFRRQLDKL 361 (634)
Q Consensus 343 KqelL~kq~eeqk~ll~kL 361 (634)
|-+||+++|||||.++++-
T Consensus 7 Km~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 7 KMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6679999999999998764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=81.31 E-value=0.77 Score=50.31 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=40.7
Q ss_pred cceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHHc
Q 048615 464 PTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFLS 534 (634)
Q Consensus 464 ~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~~ 534 (634)
-++|+|+ .|..++ +.+|.+||.+||.|.++...... ...++|.|.++.++..++..
T Consensus 53 ~rsv~v~--~~~~~~-~~~l~~y~~~~g~i~~~~~~~~~------------g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH--CPEKIS-ENKFLKYLSQFGPINNHFFYESF------------GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE--ECCC----CHHHHHHGGGSCCCCEEEECSS------------SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE--cCCCCC-HHHHHHHHHhcCCcceEEEEccC------------CeEEEEEeCCHHHHHHHHhc
Confidence 3678886 366665 89999999999999999987655 28999999999999866433
No 399
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=74.44 E-value=7.3 Score=33.09 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=52.3
Q ss_pred ceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 465 TAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 465 t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
++|.| --||++++ ++++.+.+..+.++.......+.. ..+++.-+-|+|.|++..++..... +|..|-+
T Consensus 2 ~KvVI-RrLPP~Lt-eeeF~~~l~~~~~~d~~~fv~G~~-----s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVI-RRLPPTLT-KEQLQEHLQPMPEHDYFEFFSNDT-----SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEE-EEECTTCC-HHHHHHHHCSCCCEEEEEEEESCC-----SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEE-eCCCCCCC-HHHHHHHhcCcccceEEEEeCCcc-----CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 45666 68999998 999999999999888877765542 2334445789999999888877764 4887754
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=71.02 E-value=5.3 Score=34.68 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=40.4
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL 533 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~ 533 (634)
|+-.|.| ..|.+.. -.+|.+-|..||-| .|.-.+ | .+|+|.|.+|..|..|+.
T Consensus 5 R~HV~~l--~FP~ewK-t~Di~~lFs~fggv-~I~Wid-----D---------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 5 SDHVLHV--TFPKEWK-TSDLYQLFSAFGNI-QISWID-----D---------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEEE--ECCTTCC-HHHHHHHTTTSEEE-EEEEEE-----T---------TEEEEEEEEECHHHHHHH
T ss_pred CCeEEEE--eCChhhh-hHHHHHHHhccCCE-EEEEEc-----C---------CeEEEEecCHHHHHHHHH
Confidence 4555666 5688886 89999999999943 333322 2 489999999999999986
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.04 E-value=13 Score=40.94 Aligned_cols=54 Identities=26% Similarity=0.466 Sum_probs=43.1
Q ss_pred CEEEEeCCCCCCCCHHHHHHhhccCCCEEEEEEecCCCeEEEEeCCHHHHHHHHHcCC
Q 048615 177 RTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSPD 234 (634)
Q Consensus 177 ~tLfVgnLp~d~~te~~L~~~FskfG~I~~v~v~~dkg~AFV~F~s~e~A~~Ai~~ln 234 (634)
..++|+ +|.. +...+|.++|+.||.| +|+ ..+...|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~-~~~~~i~~~fs~fg~v-~V~-widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKE-WKTSDLYQLFSAFGNI-QIS-WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTT-CCHHHHHHHGGGGCCC-EEE-ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCC-CCHHHHHHHHHhcCCE-EEE-EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 466665 8884 8999999999999954 443 2355789999999999999998774
No 402
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.28 E-value=16 Score=40.13 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Q 048615 324 PPLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQAGGKSDVV 372 (634)
Q Consensus 324 ~~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLek~~~~k~~~~ 372 (634)
+.|+++++.|+..-+.+-++..+|+..+++|+..|.|||..-..+...|
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777776666667778888888888888888887544444444
No 403
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.06 E-value=20 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 330 LDNLEQLKEELRKKQELLDQKRNDFRRQLDK 360 (634)
Q Consensus 330 qE~le~~~e~~kkKqelL~kq~eeqk~ll~k 360 (634)
-|+|++-.+.+++|-+.|.++.++++..|.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666677788888888888888876654
No 404
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=41.28 E-value=47 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=28.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 325 PLQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLE 362 (634)
Q Consensus 325 ~~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLe 362 (634)
+++.+-|+|..-++-++..+++|..+..+-|.++..|.
T Consensus 30 ~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~ 67 (70)
T 3brv_B 30 ILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLG 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777888888888887777764
No 405
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=38.97 E-value=49 Score=36.39 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=42.3
Q ss_pred CCcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH
Q 048615 462 NRPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL 533 (634)
Q Consensus 462 nr~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~ 533 (634)
.|+..|.| + .|.... ..+|.+.|..||.+ +|...++ .|++|.|.++..|+.++.
T Consensus 438 ~R~~vl~v-~-f~~~~~-~~~i~~~fs~fg~v-~V~widd--------------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 438 KRDHVLHV-T-FPKEWK-TSDLYQLFSAFGNI-QISWIDD--------------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp CGGGEEEE-E-CCTTCC-HHHHHHHGGGGCCC-EEEECSS--------------SEEEEECSCHHHHHHHHH
T ss_pred CcCcEEEE-e-CCCCCC-HHHHHHHHHhcCCE-EEEEEcC--------------CeEEEEECCHHHHHHHHH
Confidence 37888887 4 667775 78999999999965 4544433 489999999999998875
No 406
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.13 E-value=80 Score=34.78 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 339 ELRKKQELLDQKRNDFRRQLDKLEKQ 364 (634)
Q Consensus 339 ~~kkKqelL~kq~eeqk~ll~kLek~ 364 (634)
+++++++-|+..++.|..+|.-|+..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776654
No 407
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.42 E-value=1e+02 Score=22.40 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=25.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 326 LQKKLDNLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQ 364 (634)
Q Consensus 326 ~~KkqE~le~~~e~~kkKqelL~kq~eeqk~ll~kLek~ 364 (634)
++||..-|++-.-.+++..+-|++-|.-++..|.+||..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 556666555554455555555677777788878777754
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.62 E-value=17 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=25.9
Q ss_pred CceEEEEcCCHHHHHHHhccCCceeCCEEEEEccC
Q 048615 115 NSLDYLENETKEDREALPSLQGSYRRGKRIIEGDA 149 (634)
Q Consensus 115 ~GfgFVeF~~~e~A~Ai~~mnG~~l~GR~I~V~~a 149 (634)
..|.||+-......+++..|++..+.|++++|..+
T Consensus 40 d~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 40 DNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp SSCEEEEECTTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCcEEEEECHHHHHHHHHHhccccCcCceEEEEEC
Confidence 56889998776555899999999999999988754
No 409
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=32.92 E-value=68 Score=23.69 Aligned_cols=20 Identities=45% Similarity=0.765 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHH-HHHHHH
Q 048615 329 KLDNLEQLKEELRK-KQELLD 348 (634)
Q Consensus 329 kqE~le~~~e~~kk-KqelL~ 348 (634)
|||-|+-++.++.| |+|+++
T Consensus 13 KqEIL~E~RkElqK~K~EIIe 33 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34434444333333 444443
No 410
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.85 E-value=1.6e+02 Score=23.91 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=4.1
Q ss_pred chhhhHHHHHH
Q 048615 326 LQKKLDNLEQL 336 (634)
Q Consensus 326 ~~KkqE~le~~ 336 (634)
+++|.|+|.++
T Consensus 28 L~~K~eELr~k 38 (72)
T 3nmd_A 28 LQEKIEELRQR 38 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 411
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=24.74 E-value=89 Score=26.75 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=47.3
Q ss_pred CcceEEEcCCCCCCCCCHHHHHHHhhcccceeEEEecCCccccCCCCCCCCCCceEEEEecChHHHHHHHH--cCCccCC
Q 048615 463 RPTAFRIMPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSAERAFL--SGKSWQG 540 (634)
Q Consensus 463 r~t~l~V~~~l~~~~~~~~~L~~hF~~fGei~sv~~~~~~~~~~~~~~~~~~~~~~~V~F~tR~~AE~A~~--~g~~~~g 540 (634)
..-.|.| --||++++ ++++.+.+...=+++.....+.. ...+++.-+-|+|.|++..+...+.. +|..|-+
T Consensus 8 ~~~KvVI-RrLPP~Lt-ee~F~~~l~~~~~~d~~~fv~G~-----~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVI-RRLPPGLT-KEQLEEQLRPLPAHDYFEFFAAD-----LSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEE-ECCCSCSC-HHHHTTTTSCCSSEEECCCCCCC-----SSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEE-eCCCCCCC-HHHHHHHhCCcCccceEEEeCCc-----cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3456777 68999998 88888777765454444333332 12344444779999999988888765 3777743
No 412
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.18 E-value=1e+02 Score=32.88 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 048615 340 LRKKQELLDQKRNDFRRQLDKLEKQAG 366 (634)
Q Consensus 340 ~kkKqelL~kq~eeqk~ll~kLek~~~ 366 (634)
.+..+.+|+||+.+.++-+.+++++..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 344678899999999999999998754
No 413
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.30 E-value=1.8e+02 Score=24.19 Aligned_cols=8 Identities=13% Similarity=0.738 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 048615 355 RRQLDKLE 362 (634)
Q Consensus 355 k~ll~kLe 362 (634)
+..|++|+
T Consensus 57 ~~ei~~le 64 (84)
T 1gmj_A 57 AKEIERLQ 64 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333343
No 414
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.84 E-value=1.9e+02 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 339 ELRKKQELLDQKRNDFRRQLDKLE 362 (634)
Q Consensus 339 ~~kkKqelL~kq~eeqk~ll~kLe 362 (634)
++++-.+-|..++++++++-..++
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~ 68 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIE 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445556666665555554
No 415
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.79 E-value=2e+02 Score=20.83 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 333 LEQLKEELRKKQELLDQKRNDFRRQLDKLEKQ 364 (634)
Q Consensus 333 le~~~e~~kkKqelL~kq~eeqk~ll~kLek~ 364 (634)
|-++-+-..+.-+..+++|.+++..|..||.-
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333445556666777888888888877753
No 416
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.43 E-value=1.7e+02 Score=18.77 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 332 NLEQLKEELRKKQELLDQKRNDFR 355 (634)
Q Consensus 332 ~le~~~e~~kkKqelL~kq~eeqk 355 (634)
+||-..+.++||-..|+++|..+|
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 455556667777777777766554
No 417
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.14 E-value=1.5e+02 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048615 329 KLDNLEQLKEELRKKQELLDQKRNDFR 355 (634)
Q Consensus 329 kqE~le~~~e~~kkKqelL~kq~eeqk 355 (634)
|.|+.|+.++.++++|.-+++.+++|+
T Consensus 495 ~~e~~~~~~~~l~~~~~~~~~~~~~~~ 521 (592)
T 1f5n_A 495 KAESAQASAKMLHEMQRKNEQMMEQKE 521 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444444444444444443
No 418
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.02 E-value=2.3e+02 Score=21.26 Aligned_cols=36 Identities=11% Similarity=0.373 Sum_probs=21.8
Q ss_pred chhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 048615 326 LQKKLDNLEQLKEELRK----KQELLDQKRNDFRRQLDKL 361 (634)
Q Consensus 326 ~~KkqE~le~~~e~~kk----KqelL~kq~eeqk~ll~kL 361 (634)
.+||.+.++.+..+.++ |..|-+-++.++++.|+.|
T Consensus 5 errr~e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 5 ERRRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888777766 3444444455555555444
Done!