BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048616
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 219/256 (85%), Gaps = 1/256 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G+KPD+V+YN LIDVYCKDR++EKAYK+++KMR+E+ +PDVI+YT++IGGLGL+GQ
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
PDKAR+VLKEMKEYGCYPD AAYNAAIRN+CIA+RL DA L+DEMV+KGLSPNATTYNL
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
FFRV +NDL SW LY RM+G CLPNTQSCMFL+K+ KR EKV++A++LW DMV KG
Sbjct: 357 FFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKG 416
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
FGSY LVSDVL DLLCD+ K+ EAEK LEM+EKGH+PS VSF+RIK LMELANK + +
Sbjct: 417 FGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVN 476
Query: 241 NLSNKMALFGPSMIPK 256
NL KMA+F + IP+
Sbjct: 477 NLIQKMAIFS-TEIPR 491
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 7/195 (3%)
Query: 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVL 68
D +N L+ C+++ + A + ++ + PD+ ++ ++ G + A
Sbjct: 179 DTACFNALLRTLCQEKSMTDARNVYHSLKHQ-FQPDLQTFNILLSGWKSSEE---AEAFF 234
Query: 69 KEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128
+EMK G PD YN+ I YC + + A L+D+M E+ +P+ TY
Sbjct: 235 EEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLI 294
Query: 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVS 188
+ + M GC P+ + ++ ++ A +L ++MV+KG
Sbjct: 295 GQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTY 354
Query: 189 DVLFDLLC---DMGK 200
++ F +L D+G+
Sbjct: 355 NLFFRVLSLANDLGR 369
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+ P++ +YN ++ + + Q+ A++ +M+ D DV++YT+++ G G+ G+
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+AR+V EM G P A YNA I+ C + +A + +EMV +G PN TTYN+
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
R + + + L RM GC PN Q+ +++ +VE AL L+ M G
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM---G 397
Query: 181 FGSYILVSDVLFDLLCDM------GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234
G + D L+ M +V A K LEM+E+G P + +F R+ + L
Sbjct: 398 SGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTG 457
Query: 235 KQ 236
Q
Sbjct: 458 NQ 459
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G D+ S+N ++DV CK ++VEKAY++ +R S D ++Y I+ G L+ +
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKR 210
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
KA +VLKEM E G P+ YN ++ + A ++R A EM ++ + TY
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTT 270
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + +++ + N++ M+ G LP+ + ++++ +++ VE A+ ++ +MV +G
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRG 330
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219
+ + +VL L G+ E+ M +G +P+
Sbjct: 331 YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 369
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 122/250 (48%), Gaps = 7/250 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR + + P ++ + + Y + +KA K+ M + D+ S+ +I+ L +
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176
Query: 61 PDKARDVLKEMKEYGCYP-DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
+KA ++ + ++ G + D YN + +C+ KR A ++ EMVE+G++PN TTYN
Sbjct: 177 VEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYN 234
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
+ F+ + +R +W + M C + + +V +++ A ++++M+ +
Sbjct: 235 TMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIRE 294
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALM---ELANK 235
G + + + +LC + A F EM+ +G++P+ ++ I+ L E +
Sbjct: 295 GVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRG 354
Query: 236 QEALQNLSNK 245
+E +Q + N+
Sbjct: 355 EELMQRMENE 364
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 131/247 (53%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ M VKP +V+Y LI+ YC+ R+V+ A +++E+M+ ++ + + + II GLG G+
Sbjct: 276 MKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR 335
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A +++ P YN+ ++N+C A L AS ++ M+ +G+ P TTYN
Sbjct: 336 LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNH 395
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
FF+ F N NLY +++ G P+ + ++K+ K+ +A+Q+ +M +G
Sbjct: 396 FFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRG 455
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+L + +L LLC + L EA + F + +G P ++F+ I + + +
Sbjct: 456 IDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAK 515
Query: 241 NLSNKMA 247
LS+ M+
Sbjct: 516 RLSSLMS 522
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 1/238 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P + +N L++ + + R++++A K+ E+M+ ++ P V++Y ++I G + + A +V
Sbjct: 248 PSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEV 307
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L+EMK + +N I A RL +A G+M+ P TYN + F
Sbjct: 308 LEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCK 367
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ DL + + MM G P T + K + K E + L+ ++E G L
Sbjct: 368 AGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLT 427
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSN 244
++ +LC+ GKL A + EM +G P ++ I L L +EA + N
Sbjct: 428 YHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDN 485
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 6/260 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +GVK D+VSY+ +I Y K + K K+ ++M+ E I PD Y +++ L
Sbjct: 293 MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASF 352
Query: 61 PDKARDVLKEM-KEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
+AR+++K M +E G P+ YN+ I+ C A++ +A + DEM+EKGL P TY+
Sbjct: 353 VSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYH 412
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
F R+ ++ + L +M GC P ++ + L++ R + L LW++M EK
Sbjct: 413 AFMRILRTGEEV---FELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEK 469
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL 239
G + V+ L GK+ EA + EM +KG +P++ I++ + KQ A
Sbjct: 470 TVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSW--FSGKQYAE 527
Query: 240 QNLSNKMALFGPSMIPKREE 259
Q +++ I K+ E
Sbjct: 528 QRITDSKGEVNKGAIVKKSE 547
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 128/252 (50%), Gaps = 14/252 (5%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+E GV P++ +YNC+++ CKD + + A+++ ++MR+ +S ++++Y ++IGGL +
Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMK 318
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A V+ +MK G P+ YN I +C +L A L ++ +GLSP+ TYN+
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F D + + M G P+ + L+ R + +E A+QL M E G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV--------------SFRRI 226
+ VL C G++ EA + F M+EK +P++V S+R +
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 227 KALMELANKQEA 238
K L E+ K+ A
Sbjct: 499 KLLKEMEEKELA 510
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 2/247 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MRE GV +IV+YN LI C++ ++ +A K+V++M+ + I+P++I+Y ++I G VG+
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
KA + +++K G P YN + +C A+ ++ EM E+G+ P+ TY +
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
F S+++ + L M G +P+ + L+ C + + E A +L+ MVEK
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNE-ASRLFKSMVEK 472
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL 239
++ + + C G A K EM EK P+ S+R + ++ K +
Sbjct: 473 NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEA 532
Query: 240 QNLSNKM 246
+ L KM
Sbjct: 533 ERLVEKM 539
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 1/241 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
+ E G P++V Y LID CK ++EKA + +M + + +YT +I GL G
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ ++ ++M+E G +P+ YN + C R +DA + DEM E+G+S N TYN
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
L + + +M G PN + L+ K+ AL L D+ +G
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEAL 239
++ ++L C G A K EM E+G KPS+V++ I N ++A+
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428
Query: 240 Q 240
Q
Sbjct: 429 Q 429
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 1/166 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+KP V+Y LID + + +EKA ++ M + + PDV +Y+ +I G + GQ
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A + K M E C P+ YN I YC A L+ EM EK L+PN +Y
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166
V + + L +M+ +G P+T S + L+ K V
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPST-SILSLISRAKNDSHV 563
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 4/185 (2%)
Query: 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLM 103
DV S+ +I G G+ +K+ D+L E+ E+G P+ Y I C + A L
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 104 DEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN--TQSCMFLVKLCK 161
EM + GL N TY + + + + + +Y +M G PN T +C+ + +LCK
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCV-MNQLCK 280
Query: 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV 221
+ + A Q++++M E+G I+ + L LC KL EA K +M G P+ +
Sbjct: 281 -DGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 222 SFRRI 226
++ +
Sbjct: 340 TYNTL 344
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Query: 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142
Y I +Y ++ L + +EMV+ G P + +N S+ W+ +
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156
Query: 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202
L + S L+K C ++E + L ++ E GF +++ L D C G++
Sbjct: 157 SKVVL-DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215
Query: 203 EAEKSFLEMIEKG 215
+A+ F EM + G
Sbjct: 216 KAKDLFFEMGKLG 228
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 1/227 (0%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
G+ P+I + N L+ CK +E AYK+++++ + P++++YT+I+GG G +
Sbjct: 185 FGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMES 244
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A+ VL+EM + G YPDA Y + YC R +A+ +MD+M + + PN TY + R
Sbjct: 245 AKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIR 304
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
+ N++ M+ +P++ C ++ KV+ A LW M++
Sbjct: 305 ALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP 364
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230
+ L LC G++ EA K F E EKG PS +++ + A M
Sbjct: 365 DNALLSTLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGM 410
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 121/240 (50%), Gaps = 2/240 (0%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
MG+ P++V+Y ++ Y +E A +++E+M D PD +YT ++ G +G+ +
Sbjct: 220 MGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSE 279
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A V+ +M++ P+ Y IR C K+ +A + DEM+E+ P+++
Sbjct: 280 AATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVID 339
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
+ + + L+ +M+ C+P+ L+ ++ +V A +L+ D EKG
Sbjct: 340 ALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLF-DEFEKGSIP 398
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNL 242
+L + L +C+ G+L EA + + +M E+ KP+ ++ I+ L + N +E ++ L
Sbjct: 399 SLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVL 458
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 4/245 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G PD +Y L+D YCK + +A +++ M +I P+ ++Y +I L +
Sbjct: 252 MLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKK 311
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+AR++ EM E PD++ I C ++ +A GL +M++ P+ +
Sbjct: 312 SGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLST 371
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
+ + L+ G +P+ + L+ +C++ E E A +LW+DM E+
Sbjct: 372 LIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTE-AGRLWDDMYER 429
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEA 238
+VL + L G + E + EM+E G P++ +F + + L +L +++A
Sbjct: 430 KCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDA 489
Query: 239 LQNLS 243
++ +S
Sbjct: 490 MKIVS 494
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E PD +ID C+D +V++A + KM + PD +++I L G+
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR 381
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+AR + E E G P YN I C L +A L D+M E+ PNA TYN+
Sbjct: 382 VTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNV 440
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ +++ + M+ GC PN + + L + ++ K E A+++ + V G
Sbjct: 441 LIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNG 500
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 5/230 (2%)
Query: 14 NCLIDV---YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKE 70
N ID+ Y + E + +I ++ D + V S +++ L + D + K
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 180
Query: 71 MKE-YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN 129
KE +G P+ N ++ C + A ++DE+ GL PN TY +
Sbjct: 181 SKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARG 240
Query: 130 DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSD 189
D+ S+ + M+ G P+ + L+ + + A + +DM + +
Sbjct: 241 DMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYG 300
Query: 190 VLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEA 238
V+ LC K EA F EM+E+ P S + + I AL E EA
Sbjct: 301 VMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEA 350
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 8/221 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G +P++ +YN L+ CK+ +V+ A K++ +M ++ PD +SYT++I + VG
Sbjct: 172 MKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGL 231
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ R++ + + P + YNA I C + A LM EMVEKG+SPN +Y+
Sbjct: 232 VKEGRELAERFE-----PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYST 286
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
V S + +++ +M+ GC PN + LVK C + AL LWN M+ +G
Sbjct: 287 LINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMI-RG 345
Query: 181 FG--SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219
FG ++ + L C G +V+A F M E G P+
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN 386
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 1/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
+R G++P++V+YN L+ +C + KA + M + SP++ +Y S+I G G
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A + +M GC P+ Y + C + ++A L++ M ++ +P+ T+N
Sbjct: 403 LDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 462
Query: 121 FFRVFYWSNDLRSSWNLYCRM-MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
F + + L + ++ +M C PN + L+ + ++E A L ++ +
Sbjct: 463 FIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMR 522
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G + L C+ G A + +M+ G P +++ I
Sbjct: 523 GVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMI 569
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 77/291 (26%)
Query: 1 MREM---GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKM--------------------- 36
MREM G+ P+++SY+ LI+V C Q+E A+ + +M
Sbjct: 269 MREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFL 328
Query: 37 ---------------RDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA 81
R + P+V++Y +++ G G KA V M+E GC P+
Sbjct: 329 RGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIR 388
Query: 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRM 141
Y + I + AKR G +D V+ W+ +M
Sbjct: 389 TYGSLINGF--AKR-----GSLDGA-----------------VYIWN-----------KM 413
Query: 142 MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201
+ +GC PN +V+ R K + A L M ++ + + LCD G+L
Sbjct: 414 LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRL 473
Query: 202 VEAEKSFLEMIEKGHK--PSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
AEK F +M E+ H+ P+ V++ + + AN+ E L+ ++ + G
Sbjct: 474 DWAEKVFRQM-EQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG 523
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 32/244 (13%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARD 66
K +++ +I D QV+ ++++M+ + + S+I VG ++A +
Sbjct: 73 KHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVE 132
Query: 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126
+ +KE+GC P YN + R++ + +M G PN TYN+ +
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192
Query: 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK---------------------------- 158
+N + + L M GC P+ S ++
Sbjct: 193 KNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNAL 252
Query: 159 ---LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215
LCK + + A +L +MVEKG ++ L ++LC+ G++ A +M+++G
Sbjct: 253 INGLCKEHD-YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRG 311
Query: 216 HKPS 219
P+
Sbjct: 312 CHPN 315
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P+IV+YN L+D K ++E+AY + ++ + +Y +++ G G P A +
Sbjct: 491 PNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQL 550
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV--EKGLSPNATTYNLFFRVF 125
+ +M G PD N I YC + A+ ++D + + P+ +Y
Sbjct: 551 VGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGL 610
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157
SN L RM+ G +P+ + L+
Sbjct: 611 CRSNCREDGVILLERMISAGIVPSIATWSVLI 642
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMR--DEDISPDVISYTSIIGGLGLVGQPD 62
G PD ++ N +I YCK + E+A ++++ + PDVISYT++I GL +
Sbjct: 558 GKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCRE 617
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97
+L+ M G P A ++ I + + +R
Sbjct: 618 DGVILLERMISAGIVPSIATWSVLINCFILDDIVR 652
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 27/211 (12%)
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK-----------------RLRDASGLMDE 105
K DV+K +++ C P A + +I N + K ++ L+ +
Sbjct: 42 KELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQ 101
Query: 106 MVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165
M +G + + V+ + ++ R+ GC P+ + ++ + +
Sbjct: 102 MKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENR 161
Query: 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225
+++ ++ DM GF + +VL LC K+ A+K +EM KG P VS+
Sbjct: 162 IQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTT 221
Query: 226 IKALM----------ELANKQEALQNLSNKM 246
+ + M ELA + E + ++ N +
Sbjct: 222 VISSMCEVGLVKEGRELAERFEPVVSVYNAL 252
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV+ +YN L+ C A ++V KM + SPD I+ II G+ ++A
Sbjct: 523 GVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERA 582
Query: 65 RDVLKEMK--EYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
+L + PD +Y I C + D L++ M+ G+ P+ T+++
Sbjct: 583 AQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLI 642
Query: 123 RVFYWSNDLRS 133
F + +R+
Sbjct: 643 NCFILDDIVRA 653
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 129/246 (52%), Gaps = 3/246 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M++ G +PD+V+Y +I+ +CK ++ E+A + +M + P + S+I GLG +
Sbjct: 258 MKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKK 317
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A + + K G +A YNA + YC ++R+ DA +DEM KG+ PNA TY++
Sbjct: 318 LNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDI 377
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ ++ +Y M C P + +V++ +E++++A+++W++M KG
Sbjct: 378 ILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKG 434
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ + L LC KL EA + F EM++ G +P F R+K + +++ +
Sbjct: 435 VLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVT 494
Query: 241 NLSNKM 246
+L KM
Sbjct: 495 DLVVKM 500
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 1/222 (0%)
Query: 20 YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD 79
Y + R+V++A KM + + + ++ L A+ V +MK+ PD
Sbjct: 172 YARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPD 231
Query: 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYC 139
+Y + + L + EM ++G P+ Y + + + +
Sbjct: 232 IKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFN 291
Query: 140 RMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199
M C P+ L+ ++K+ AL+ + GF + L C
Sbjct: 292 EMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQ 351
Query: 200 KLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEALQ 240
++ +A K+ EM KG P+ ++ I L+ + +EA +
Sbjct: 352 RMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYE 393
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 116/219 (52%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
PD+++Y LI+ C+D V A K++++MRD +PDV++Y ++ G+ G+ D+A
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M GC P+ +N +R+ C R DA L+ +M+ KG SP+ T+N+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
L + ++ +M GC PN+ S L+ +++K++ A++ MV +G I+
Sbjct: 357 KGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + LC GK+ +A + ++ KG P +++ +
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 3/219 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G PDI+ LI +C+ + KA KI+E + PDVI+Y +I G G+ + A
Sbjct: 132 GNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA 191
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
VL M PD YN +R+ C + +L+ A ++D M+++ P+ TY +
Sbjct: 192 LSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEA 248
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + + L M GC P+ + LV ++ +++ A++ NDM G
Sbjct: 249 TCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPN 308
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ +++ +C G+ ++AEK +M+ KG PS V+F
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR+ G PD+V+YN L++ CK+ ++++A K + M P+VI++ I+ + G+
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M G P +N I C L A ++++M + G PN+ +YN
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEK 179
F + + RM+ GC P+ + L LCK KVE A+++ N + K
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK-DGKVEDAVEILNQLSSK 443
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G ++ + + D L GK +A K EM K KP +++
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 3/202 (1%)
Query: 25 QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84
++E+ +K +E M PD+I T++I G +G+ KA +L+ ++ G PD YN
Sbjct: 117 ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYN 176
Query: 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144
I YC A + +A ++D M +SP+ TYN R S L+ + + RM+
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 145 GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204
C P+ + L++ R V A++L ++M ++G ++ +VL + +C G+L EA
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 205 EKSFLEMIEKGHKPSQVSFRRI 226
K +M G +P+ ++ I
Sbjct: 294 IKFLNDMPSSGCQPNVITHNII 315
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PDIV+YN ++ CKD +VE A +I+ ++ + SP +I+Y ++I GL G+
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
KA +L EM+ PD Y++ + ++ +A E G+ PNA T+N
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S + + M+ GC PN S L++ + + AL+L N++ KG
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Query: 181 F 181
Sbjct: 585 L 585
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 1/244 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G P +V++N LI+ C+ + +A I+EKM P+ +SY ++ G +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A + L+ M GCYPD YN + C ++ DA +++++ KG SP TYN
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + L M P+T + LV R+ KV+ A++ +++ G
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEAL 239
+ + + LC + A + MI +G KP++ S+ I+ L +EAL
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
Query: 240 QNLS 243
+ L+
Sbjct: 575 ELLN 578
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G P +++YN +ID K + KA K++++MR +D+ PD I+Y+S++GGL G+ D+A
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEA 503
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
E + G P+A +N+ + C +++ A + M+ +G PN T+Y +
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQS 152
+ + + L + G + + +
Sbjct: 564 LAYEGMAKEALELLNELCNKGLMKKSSA 591
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
MG++P+ V++N ++ CK RQ ++A + M + P+ SYT +I GL G +
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE 572
Query: 64 ARDVLKEMKEYGCYPDAAAYNAA 86
A ++L E+ G ++A A
Sbjct: 573 ALELLNELCNKGLMKKSSAEQVA 595
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 127/256 (49%), Gaps = 10/256 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCK----------DRQVEKAYKIVEKMRDEDISPDVISYTS 50
M E G++P++V+YN L++ C+ +R V A K+ ++MR I PDV S++
Sbjct: 233 MIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSI 292
Query: 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKG 110
++ + + D +K MK G P Y + ++ C RL +A L++ MVE G
Sbjct: 293 VLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESG 352
Query: 111 LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170
+SP++ TYN FF+ + D + NLY +M C P+TQ+ L+ K+E
Sbjct: 353 ISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVK 412
Query: 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230
++W+D+ G + L LC K EA F+EMIE+G P +++F + +
Sbjct: 413 EIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGL 472
Query: 231 ELANKQEALQNLSNKM 246
+NK + L K+
Sbjct: 473 IQSNKMRTWRRLKKKL 488
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 13/190 (6%)
Query: 45 VISYTSIIGGLGLVGQPDKARDVLKEMKE-YGCYPDAAAYNAAIRNYCIAKRLRDASGLM 103
++ + ++ L G A V E KE +G D Y I +C +R+ A +
Sbjct: 173 LVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGS--DEKVYTILIAGWCKLRRIDMAEKFL 230
Query: 104 DEMVEKGLSPNATTYNLFFRVF----------YWSNDLRSSWNLYCRMMGTGCLPNTQSC 153
EM+E G+ PN TYN+ + ++R++ ++ M G P+ S
Sbjct: 231 VEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSF 290
Query: 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213
++ + R K E+ L M KG I + LC G+L EAE+ M+E
Sbjct: 291 SIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVE 350
Query: 214 KGHKPSQVSF 223
G PS ++
Sbjct: 351 SGISPSSATY 360
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PD V Y LID +CK + A K +M DI+PDV++YT+II G +G
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A + EM G PD+ + I YC A ++DA + + M++ G SPN TY
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
DL S+ L M G PN + +V + +E A++L + G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L D C G++ +A++ EM+ KG +P+ V+F
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF 564
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 116/215 (53%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G++P+I +YN +++ CK +E+A K+V + ++ D ++YT+++ G+
Sbjct: 482 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 541
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DKA+++LKEM G P +N + +C+ L D L++ M+ KG++PNATT+N
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 601
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + N+L+++ +Y M G P+ ++ LVK + ++ A L+ +M KG
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215
F + VL K +EA + F +M +G
Sbjct: 662 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 1/241 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PD++SY+ +++ YC+ +++K +K++E M+ + + P+ Y SIIG L + +
Sbjct: 272 MELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK 331
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A + EM G PD Y I +C +R AS EM + ++P+ TY
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F D+ + L+ M G P++ + L+ + ++ A ++ N M++ G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEAL 239
++ L D LC G L A + EM + G +P+ ++ I L + N +EA+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 240 Q 240
+
Sbjct: 512 K 512
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 4/193 (2%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ D V+Y L+D YCK +++KA +I+++M + + P ++++ ++ G L G +
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+L M G P+A +N+ ++ YCI L+ A+ + +M +G+ P+ TY +
Sbjct: 581 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 640
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ +++ +W L+ M G G + + L+K +++K A ++++ M +G +
Sbjct: 641 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAA- 699
Query: 185 ILVSDVLFDLLCD 197
+FD D
Sbjct: 700 ---DKEIFDFFSD 709
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 110/222 (49%), Gaps = 2/222 (0%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
E+GV ++ SYN +I C+ ++++A+ ++ M + +PDVISY++++ G G+ D
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELD 298
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
K +++ MK G P++ Y + I C +L +A EM+ +G+ P+ Y
Sbjct: 299 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 358
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGF 181
F D+R++ + M P+ + ++ C+ + VE A +L+++M KG
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE-AGKLFHEMFCKGL 417
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ L + C G + +A + MI+ G P+ V++
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 6/250 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G+KP+ Y +I + C+ ++ +A + +M + I PD + YT++I G G
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A EM PD Y A I +C + +A L EM KGL P++ T+
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
+ + ++ ++ ++ M+ GC PN + L+ LCK + ++ A +L ++M +
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-LDSANELLHEMWKI 485
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALM----ELANK 235
G I + + + LC G + EA K E G V++ + E+
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 236 QEALQNLSNK 245
QE L+ + K
Sbjct: 546 QEILKEMLGK 555
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%)
Query: 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLM 103
+V SY +I + +G+ +A +L M+ G PD +Y+ + YC L L+
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 104 DEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKR 162
+ M KGL PN+ Y + L + + M+ G LP+T L+ CKR
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
+ + A + + +M + +L + C +G +VEA K F EM KG +P V+
Sbjct: 365 GD-IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423
Query: 223 FRRI 226
F +
Sbjct: 424 FTEL 427
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%)
Query: 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126
V +E E G + A+YN I C R+++A L+ M KG +P+ +Y+ +
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186
+L W L M G PN+ ++ L R K+ A + +++M+ +G +
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
V L D C G + A K F EM + P +++ I
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ P+ ++N L+ YC ++ A I + M + PD +Y +++ G
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A + +EMK G + Y+ I+ + K+ +A + D+M +GL+ + ++
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706
Query: 121 F 121
F
Sbjct: 707 F 707
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 109 KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSC-MFLVKLCKRQEKVE 167
K + +++FF+V LR + ++ +M+ G + + SC ++L +L K K
Sbjct: 169 KDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTA 228
Query: 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
A+ ++ + E G + +++ +C +G++ EA L M KG+ P +S+ +
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 4/248 (1%)
Query: 2 REM---GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV 58
REM G PDIV+Y+ ++D+ CK +V++A IV M P Y+ ++ G
Sbjct: 261 REMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTE 320
Query: 59 GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY 118
+ ++A D EM+ G D A +N+ I +C A R+++ ++ EM KG++PN+ +
Sbjct: 321 NRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSC 380
Query: 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178
N+ R + +++++ +M+ C P+ + ++K+ ++++E A ++W M +
Sbjct: 381 NIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRK 439
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238
KG + VL + LC+ +A EMIE G +PS V+F R++ L+ +++
Sbjct: 440 KGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDV 499
Query: 239 LQNLSNKM 246
L+ L+ KM
Sbjct: 500 LKFLNEKM 507
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 2/237 (0%)
Query: 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLK 69
+ +Y+ +I+ K RQ + + ++ MR + + +V ++ ++ + D+A
Sbjct: 134 VRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFN 192
Query: 70 EMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN 129
M++Y P+ A+N + C +K +R A + + M ++ +P++ TY++ +
Sbjct: 193 VMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEP 251
Query: 130 DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSD 189
+L + ++ M+ GC P+ + +V + + +V+ AL + M +
Sbjct: 252 NLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYS 311
Query: 190 VLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246
VL +L EA +FLEM G K F + AN+ + + + +M
Sbjct: 312 VLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEM 368
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 1/240 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G +P + +YN +ID CK+ VE A + E+M+ + PD ++Y S+I G G VG+ D
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+EMK+ C PD YNA I +C +L EM GL PN +Y+
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
F ++ + Y M G +PN + L+ + + A +L N+M++ G
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLS 243
++ L D LCD ++ EAE+ F +M G P+ S+ I ++ N AL+ L+
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 1/243 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M++M +PD+++YN LI+ +CK ++ + +M+ + P+V+SY++++ G
Sbjct: 323 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A +M+ G P+ Y + I C L DA L +EM++ G+ N TY
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 442
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ ++ + L+ +M G +PN S L+ + + ++ AL+L N++ +G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEAL 239
+L+ LC + K+ A+ EM E G K + + + + A + N E L
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562
Query: 240 QNL 242
L
Sbjct: 563 HLL 565
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 2/262 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ V P S N L+ + K + + + + M P V +Y +I + G
Sbjct: 218 MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 277
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ AR + +EMK G PD YN+ I + RL D +EM + P+ TYN
Sbjct: 278 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 337
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F L Y M G G PN S LV ++ ++ A++ + DM G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
L D C +G L +A + EM++ G + + V++ + + A + + +
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457
Query: 241 NLSNKMALFGPSMIPKREEYLA 262
L KM G +IP Y A
Sbjct: 458 ELFGKMDTAG--VIPNLASYNA 477
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 2/244 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P ++ L V +E+A + KM+ + P S ++ +G+ D +
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
K+M G P YN I C + A GL +EM +GL P+ TYN F
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
L + + M C P+ + L+ + K+ I L+ + +M G ++
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSNKM 246
L D C G + +A K +++M G P++ ++ I A ++ N +A + L N+M
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR-LGNEM 428
Query: 247 ALFG 250
G
Sbjct: 429 LQVG 432
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 37/277 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M GV P++ SYN LI + K + +++A +++ +++ I PD++ Y + I GL + +
Sbjct: 463 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEK 522
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK----------- 109
+ A+ V+ EMKE G ++ Y + Y + + L+DEM E
Sbjct: 523 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCV 582
Query: 110 -------------------------GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144
GL NA + N + ++ L+ +M+
Sbjct: 583 LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642
Query: 145 GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204
G +P+ + L+ +Q V AL L + M E G +L L L +L +A
Sbjct: 643 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702
Query: 205 EKSFLEMIEKGHKPSQV-SFRRIKALMELANKQEALQ 240
EMI +G P +V +K EL EA++
Sbjct: 703 RSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVE 739
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ PD +Y L+D K V +A + +KM + + D+++YTS++ GL Q
Sbjct: 639 MVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQ 698
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNY----CIAKRLRDASGLMDEMVEKGLSPNA 115
KAR L+EM G +PD + ++ + CI + + S LM + + NA
Sbjct: 699 LQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNA 757
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 2/219 (0%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ P++++Y+ L+D + K+ +V +A ++ E+M I PD+++Y+S+I GL L + D+A
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
+ M GC D +YN I +C AKR+ D L EM ++GL N TYN + F
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + D+ + + +M G P+ + + L LC E +E AL ++ DM ++
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE-LEKALVIFEDMQKREMDLD 434
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I+ + +C GK+ EA F + KG KP V++
Sbjct: 435 IVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 125/252 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PD V+ L++ +C+ +V A +V+KM + PD+++Y +II L +
Sbjct: 146 MLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR 205
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A D KE++ G P+ Y A + C + R DA+ L+ +M++K ++PN TY+
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + + + L+ M+ P+ + L+ ++++ A Q+++ MV KG
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ ++ + L + C ++ + K F EM ++G + V++ + A + Q
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385
Query: 241 NLSNKMALFGPS 252
++M FG S
Sbjct: 386 EFFSQMDFFGIS 397
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 111/218 (50%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E+G KPDIV+YN +ID CK ++V A+ +++ + I P+V++YT+++ GL +
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M + P+ Y+A + + ++ +A L +EMV + P+ TY+
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + ++ M+ GCL + S L+ + ++VE ++L+ +M ++G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218
S + + L G + +A++ F +M G P
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP 398
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 122/281 (43%), Gaps = 17/281 (6%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +G++ D+ ++N +I+ +C QV A I+ KM PD ++ S++ G +
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD AYNA I + C KR+ DA E+ KG+ PN TY
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S+ + L M+ PN + L+ + KV A +L+ +MV
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF----------RRIKALM 230
I+ L + LC ++ EA + F M+ KG VS+ +R++ M
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 231 ELANKQEALQNLSNKM-------ALFGPSMIPKREEYLAEM 264
+L + +SN + F + K +E+ ++M
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G D+VSYN LI+ +CK ++VE K+ +M + + ++Y ++I G G
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DKA++ +M +G PD YN + C L A + ++M ++ + + TY
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEK 179
R + + +W+L+C + G P+ + + LC + E+ L+ M ++
Sbjct: 441 VIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE-ALYTKMKQE 499
Query: 180 GF 181
G
Sbjct: 500 GL 501
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV +N L+ K ++ + + +KM I D+ ++ +I Q A +
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G PD + + +C R+ DA L+D+MVE G P+ YN
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ + +++ + + G PN + LV + A +L +DM++K ++
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
L D GK++EA++ F EM+ P V++
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 98/215 (45%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M M + PDIV+Y+ LI+ C ++++A ++ + M + DV+SY ++I G +
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ + +EM + G + YN I+ + A + A +M G+SP+ TYN+
Sbjct: 346 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNI 405
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ +L + ++ M + + +++ + KVE A L+ + KG
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215
I+ + LC G L E E + +M ++G
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PDI +YN L+ C + ++EKA I E M+ ++ D+++YT++I G+ G+
Sbjct: 391 MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A + + G PD Y + C L + L +M ++GL N T +
Sbjct: 451 VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS- 509
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN 149
D+ S L +M+ G P+
Sbjct: 510 -------DGDITLSAELIKKMLSCGYAPS 531
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ + V+YN LI + + V+KA + +M ISPD+ +Y ++GGL G+
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA + ++M++ D Y IR C ++ +A L + KGL P+ TY
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN 149
L LY +M G + N
Sbjct: 476 MMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 11/248 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M MG KP++V YN +ID CK +QV+ A ++ +M + I PDV++Y S+I GL G+
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ M + YPD +NA I R+ +A +EM+ + L P+ TY+L
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ L + ++ M+ GC P+ + L+ + +KVE ++L+ +M ++G
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-----------KAL 229
+ +L C GKL AE+ F M+ G P+ +++ + KAL
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKAL 416
Query: 230 MELANKQE 237
+ LA+ Q+
Sbjct: 417 VILADMQK 424
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ PD+V+YN LI C + A ++V M +I PDV ++ ++I G+
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A + +EM PD Y+ I C+ RL +A + MV KG P+ TY++
Sbjct: 272 VSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ S + L+C M G + NT + L++ R K+ +A +++ MV G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
I+ +VL LCD GK+ +A +M + G V++ I
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNII 437
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 78/149 (52%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PD+V+Y+ LI+ YCK ++VE K+ +M + + ++YT +I G G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A ++ + M G +P+ YN + C ++ A ++ +M + G+ + TYN+
Sbjct: 377 LNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNI 436
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN 149
R + ++ +W++YC + G +P+
Sbjct: 437 IIRGMCKAGEVADAWDIYCSLNCQGLMPD 465
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 102/223 (45%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ ++ + N L++ +C+ Q+ A + KM P ++++ S++ G +
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A + +M G P+ YN I C +K++ +A L++ M + G+ P+ TYN
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S + + M P+ + L+ C ++ +V A + + +M+ +
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I+ +L LC +L EAE+ F M+ KG P V++
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTY 329
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + GV + V+Y LI YC+ ++ A +I +M + P++I+Y ++ GL G+
Sbjct: 352 MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA +L +M++ G D YN IR C A + DA + + +GL P+ TY
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTT 471
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN 149
Y R + L+ +M G LPN
Sbjct: 472 MMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 79/181 (43%)
Query: 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102
P + ++ ++ + + + D + ++M+ G + N + +C +L A
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162
+ +M++ G P+ T+ F + + + ++ +M+G G PN ++ +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
++V+ AL L N M + G G ++ + L LC G+ +A + M ++ P +
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258
Query: 223 F 223
F
Sbjct: 259 F 259
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDV 190
L S +L+ M+ LP+ L+ + +K ++ + LW M G + ++
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
L + C +L A +MI+ GH+PS V+F
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTF 154
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 1/251 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G++P++ +Y+ +ID C+ Q+ +A+ + M D +P+ I++ +++ G+
Sbjct: 281 MKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGR 340
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+K V +MK+ GC PD YN I +C + L +A +++ M++K NA+T+N
Sbjct: 341 TEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNT 400
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
FR D+ + +Y +MM C PNT + L+++ + ++ L++ +M +K
Sbjct: 401 IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKE 460
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI-EKGHKPSQVSFRRIKALMELANKQEAL 239
+ +L + C MG A K F EM+ EK PS + + A + A + +
Sbjct: 461 VEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKH 520
Query: 240 QNLSNKMALFG 250
+ L KM G
Sbjct: 521 EELVEKMIQKG 531
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 1/246 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ V+ I ++ LI Y + +A +M D PD I+++ +I L +
Sbjct: 177 MKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRR 236
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A+ +K+ PD Y +R +C A + +A + EM G+ PN TY++
Sbjct: 237 ASEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSI 295
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + +++ M+ +GC PN + L+++ + + E LQ++N M + G
Sbjct: 296 VIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLG 355
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ + L + C L A K MI+K + + +F I +E
Sbjct: 356 CEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAH 415
Query: 241 NLSNKM 246
+ +KM
Sbjct: 416 RMYSKM 421
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 121/226 (53%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR G+ P+ +Y L+D + + + +AY+++ +M D SP V++Y ++I G + G+
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A VL++MKE G PD +Y+ + +C + + +A + EMVEKG+ P+ TY+
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ F + + +LY M+ G P+ + L+ + +E ALQL N+MVEKG
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ VL + L + EA++ L++ + PS V++ +
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 118/236 (50%), Gaps = 3/236 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ P +++Y LI CK + +A + +++MR + P+ +YT+++ G G
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A VL+EM + G P YNA I +C+ ++ DA ++++M EKGLSP+ +Y+
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F S D+ + + M+ G P+T + L++ Q + + A L+ +M+ G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQ 236
L + C G L +A + EM+EKG P V++ L+ NKQ
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY---SVLINGLNKQ 568
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G P++V+YN LID YCK R+++ +K++ M + + P++ISY +I GL G+
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ VL EM G D YN I+ YC A + EM+ GL+P+ TY
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ ++ + +M G PN ++ LV ++ + A ++ +M + G
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
F ++ + L + C GK+ +A +M EKG P VS+ +
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 20/223 (8%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+E G+ PD+VSY+ ++ +C+ V++A ++ +M ++ I PD I+Y+S+I G +
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A D+ +EM G PD Y A I YC+ L A L +EMVEKG+ P+ TY++
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ R + L ++ +P+ + L++ C E + + KG
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI------KG 614
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
F C G + EA++ F M+ K HKP ++
Sbjct: 615 F--------------CMKGMMTEADQVFESMLGKNHKPDGTAY 643
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 1/223 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKD-RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
G P ++SYN ++D + R + A + ++M + +SP+V +Y +I G G D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A + +M+ GC P+ YN I YC +++ D L+ M KGL PN +YN+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
++ + M G + + L+K ++ AL + +M+ G
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ L +C G + A + +M +G P++ ++ +
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +G+ PD +Y LI+ YC + +EKA ++ +M ++ + PDV++Y+ +I GL +
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSR 570
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRN---------------YCIAKRLRDASGLMDE 105
+A+ +L ++ P Y+ I N +C+ + +A + +
Sbjct: 571 TREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFES 630
Query: 106 MVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165
M+ K P+ T YN+ + D+R ++ LY M+ +G L +T + + LVK ++ K
Sbjct: 631 MLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK 690
Query: 166 VE-----IALQLWNDMVEKGFGSYILVS--------DVLFDLLCDMGK 200
V I L + + + + +LV DV+ D+L +M K
Sbjct: 691 VNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAK 738
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 2/180 (1%)
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR-LRDASGLMDEMVEKGLSPNATTYNL 120
DKA ++ + +G P +YNA + +KR + A + EM+E +SPN TYN+
Sbjct: 151 DKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNI 210
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
R F ++ ++ + L+ +M GCLPN + L+ + K++ +L M KG
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
++ +V+ + LC G++ E EM +G+ +V++ IK + N +AL
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 4/233 (1%)
Query: 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSII-GGLGLVGQPDKARDVLKEM 71
++ ++ Y + ++KA IV + P V+SY +++ + A +V KEM
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196
Query: 72 KEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131
E P+ YN IR +C A + A L D+M KG PN TYN + +
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 132 RSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYILVSDV 190
+ L M G PN S ++ LC+ E++ L +M +G+ + +
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL-TEMNRRGYSLDEVTYNT 315
Query: 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNL 242
L C G +A EM+ G PS +++ I ++ + N A++ L
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 116/224 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E +K D V Y+ +ID CKD ++ A+ + +M + D+I+Y ++IGG G+
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +L++M + P+ ++ I ++ +LR+A L+ EM+++G++PN TYN
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F N L + + M+ GC P+ + L+ + +++ L+L+ +M +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224
+ + + L C GKL A+K F EM+ + +P VS++
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 123/247 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G +P+ V+Y +++V CK Q A +++ KM + +I D + Y+ II GL G
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A ++ EM+ G D YN I +C A R D + L+ +M+++ +SPN T+++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F LR + L MM G PNT + L+ ++ ++E A+Q+ + M+ KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
I+ ++L + C ++ + + F EM +G + V++ + + K E +
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 241 NLSNKMA 247
L +M
Sbjct: 459 KLFQEMV 465
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G K DI++YN LI +C + + K++ M ISP+V++++ +I G+ +A
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+LKEM + G P+ YN+ I +C RL +A ++D M+ KG P+ T+N+
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ +N + L+ M G + NT + LV+ + K+E+A +L+ +MV +
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSF 208
I+ +L D LCD G+L +A + F
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIF 496
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 37/254 (14%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ P++V+++ LID + K+ ++ +A +++++M I+P+ I+Y S+I G + ++A
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
++ M GC PD +N I YC A R+ D L EM +G+ N TYN + F
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDM----VEKG 180
S L + L+ M+ P+ S L+ LC E +E AL+++ + +E
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGE-LEKALEIFGKIEKSKMELD 507
Query: 181 FGSYILV---------SDVLFDLLCDM----------------------GKLVEAEKSFL 209
G Y+++ D +DL C + L +A+ F
Sbjct: 508 IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFR 567
Query: 210 EMIEKGHKPSQVSF 223
+M E+GH P ++++
Sbjct: 568 KMTEEGHAPDELTY 581
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ I + + +I+ +C+ R++ A+ + K+ PD + + +++ GL L +
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A +++ M E G P N + C+ ++ DA L+D MVE G PN TY
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
V S + L +M L + + + LCK ++ A L+N+M K
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK-DGSLDNAFNLFNEMEIK 292
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
GF + I+ + L C+ G+ + K +MI++ P+ V+F
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF 336
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
V+PDIVSY L+D C + ++EKA +I K+ + D+ Y II G+ + D A
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
D+ + G DA AYN I C L A L +M E+G +P+ TYN+ R
Sbjct: 529 DLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAH 588
Query: 126 YWSNDLRSSWNLYCRMMGTG 145
+D ++ L M +G
Sbjct: 589 LGDDDATTAAELIEEMKSSG 608
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 2 REM---GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV 58
REM GV + V+YN L+ +C+ ++E A K+ ++M + PD++SY ++ GL
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486
Query: 59 GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY 118
G+ +KA ++ ++++ D Y I C A ++ DA L + KG+ +A Y
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178
N+ + L + L+ +M G P+ + L++ + A +L +M
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKS 606
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
GF + + ++ ++L E +KSFL+M+
Sbjct: 607 SGFPADVSTVKMVINMLSSG----ELDKSFLDML 636
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 94/219 (42%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P ++ +N L K +Q E + ++M + I+ + + + +I + A
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
+ ++ + G PD +N + C+ R+ +A L+D MVE G P T N
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ + + L RM+ TG PN + ++ + + + +A++L M E+ +
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ D LC G L A F EM KG K +++ +
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/145 (17%), Positives = 58/145 (40%)
Query: 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRM 141
+Y + + + + DA L +M++ P +N F + L +M
Sbjct: 55 SYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM 114
Query: 142 MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201
G + + ++ R K+ A +++ G+ ++ + L + LC ++
Sbjct: 115 ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRV 174
Query: 202 VEAEKSFLEMIEKGHKPSQVSFRRI 226
EA + M+E GHKP+ ++ +
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTL 199
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G PD ++YN LI + D A +++E+M+ DV + +I L G+
Sbjct: 569 MTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLS-SGE 627
Query: 61 PDKA 64
DK+
Sbjct: 628 LDKS 631
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E +K +V Y+ +ID CKD + A + +M + I DV++Y+S+IGGL G+
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +L+EM PD ++A I + +L +A L +EM+ +G++P+ TYN
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F N L + ++ M+ GC P+ + L+ + ++V+ ++L+ ++ KG
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L C GKL A++ F EM+ +G PS V++
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 5/227 (2%)
Query: 1 MREM---GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57
+REM + PD+V+++ LIDV+ K+ ++ +A ++ +M I+PD I+Y S+I G
Sbjct: 303 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
+A + M GC PD Y+ I +YC AKR+ D L E+ KGL PN T
Sbjct: 363 ENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT 422
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDM 176
YN F S L ++ L+ M+ G P+ + + L LC E + AL+++ M
Sbjct: 423 YNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEIFEKM 481
Query: 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ I + +++ +C+ K+ +A F + +KG KP V++
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 4/217 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+K D+V+Y+ LI C D + + K++ +M +I PDV++++++I G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A+++ EM G PD YN+ I +C L +A+ + D MV KG P+ TY++
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + L+ + G +PNT + LV + K+ A +L+ +MV +G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217
++ +L D LCD G+L +A LE+ EK K
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKA----LEIFEKMQK 483
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M EM +PD+V+ + LI+ C +V +A ++++M + PD ++Y ++ L G
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A D+ ++M+E Y+ I + C DA L +EM KG+ + TY+
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ M+G +P+ + L+ + ++ K+ A +L+N+M+ +G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L D C L EA + F M+ KG +P V++
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 388
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 8/250 (3%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G++ D+ + +I+ YC+ +++ A+ ++ + PD I++++++ G L G+ +A
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ M E PD + I C+ R+ +A L+D MVE G P+ TY
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
S + + +L+ +M + Q + + LCK + AL L+N+M KG +
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK-DGSFDDALSLFNEMEMKGIKA 278
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL---Q 240
++ L LC+ GK + K EMI + P V+F AL+++ K+ L +
Sbjct: 279 DVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF---SALIDVFVKEGKLLEAK 335
Query: 241 NLSNKMALFG 250
L N+M G
Sbjct: 336 ELYNEMITRG 345
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ P+ ++YN L+ +C+ ++ A ++ ++M + P V++Y ++ GL G+ +KA
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ ++M++ YN I C A ++ DA L + +KG+ P+ TYN+
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
L + L+ +M GC P+ + L++ + +++L +M GF +
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
++ D+L D +KSFL+M+
Sbjct: 595 SSTIKMVIDMLSDR----RLDKSFLDML 618
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G +PDIV+Y+ LI+ YCK ++V+ ++ ++ + + P+ I+Y +++ G G+
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A+++ +EM G P Y + C L A + ++M + ++ YN+
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEK 179
++ + +W+L+C + G P+ + ++ LCK+ E A L+ M E
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE-ADMLFRKMKED 554
Query: 180 G 180
G
Sbjct: 555 G 555
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M GV P +V+Y L+D C + ++ KA +I EKM+ ++ + Y II G+ +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A + + + G PD YN I C L +A L +M E G +P+ TYN+
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565
Query: 121 FFRVFYWSNDLRSSWNL 137
R + L SS L
Sbjct: 566 LIRAHLGGSGLISSVEL 582
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 2/229 (0%)
Query: 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82
D +V A + E M P I + + + Q D K M+ G D
Sbjct: 48 DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107
Query: 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142
I YC K+L A ++ + G P+ T++ F + + L RM+
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167
Query: 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202
P+ + L+ + +V AL L + MVE GF + + + LC G
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227
Query: 203 EAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNLSNKMALFG 250
A F +M E+ K S V + I +L + + +AL +L N+M + G
Sbjct: 228 LALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL-SLFNEMEMKG 275
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 116/224 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E +K D V Y+ +ID CKD ++ A+ + +M + D+I YT++I G G+
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +L++M + PD A++A I + +LR+A L EM+++G+SP+ TY
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F N L + ++ M+ GC PN ++ L+ + ++ L+L+ M +G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224
+ + + L C++GKL A++ F EM+ + +P VS++
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 4/213 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G K DI+ Y LI +C + + K++ M I+PDV++++++I G+ +A
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ KEM + G PD Y + I +C +L A+ ++D MV KG PN T+N+
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ +N + L+ +M G + +T + L++ K+E+A +L+ +MV +
Sbjct: 397 YCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217
I+ +L D LCD G E EK+ LE+ EK K
Sbjct: 457 IVSYKILLDGLCDNG---EPEKA-LEIFEKIEK 485
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 35/253 (13%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ PD+V+++ LID + K+ ++ +A ++ ++M ISPD ++YTS+I G Q DKA
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
+L M GC P+ +N I YC A + D L +M +G+ + TYN + F
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQE--------------KVEIAL 170
L + L+ M+ P+ S L+ LC E K+E+ +
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492
Query: 171 QLWNDMVE--------------------KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210
++N ++ KG + +++ LC G L EA+ F +
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Query: 211 MIEKGHKPSQVSF 223
M E GH P+ ++
Sbjct: 553 MEEDGHSPNGCTY 565
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 2/220 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ ++ + + +I+ C+ R++ A+ + K+ PD ++++++I GL L G+ +A
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+++ M E G P NA + C+ ++ DA L+D MVE G PN TY +V
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV 221
Query: 125 FYWSNDLRSSWNLYCRMMGTGC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
S + L +M L + + + LCK ++ A L+N+M KGF +
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK-DGSLDNAFNLFNEMEIKGFKA 280
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I++ L C G+ + K +MI++ P V+F
Sbjct: 281 DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 4/208 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV D V+YN LI +C+ ++E A ++ ++M + PD++SY ++ GL G+P+KA
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ +++++ D YN I C A ++ DA L + KG+ P+ TYN+
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGG 536
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
L + L+ +M G PN + L++ + + +L ++ GF
Sbjct: 537 LCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVD 596
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
++ D+L D G+L +KSFL+M+
Sbjct: 597 ASTVKMVVDMLSD-GRL---KKSFLDML 620
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 91/228 (39%)
Query: 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82
D + + A + ++M P +I ++ + + Q D D+ K+M+ G +
Sbjct: 50 DIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYT 109
Query: 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142
+ I C ++L A M ++++ G P+ T++ + + L RM+
Sbjct: 110 LSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169
Query: 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202
G P + LV KV A+ L + MVE GF + + ++C G+
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229
Query: 203 EAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
A + +M E+ K V + I + + NL N+M + G
Sbjct: 230 LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 3/214 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + +KPD++++N LID + K+ + A ++ +M I+P++ +YTS+I G + G
Sbjct: 238 MTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+AR + M+ GC+PD AY + I +C K++ DA + EM +KGL+ N TY
Sbjct: 298 VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTT 357
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK- 179
+ F + ++ M+ G PN ++ L+ KV+ AL ++ DM ++
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 180 --GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211
G I +VL LC GKL +A F +M
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M EMG+KPD+V Y +ID CK+ V A + ++M + I PDV+ YTS++ GL G+
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L+ M + PD +NA I + + DA L +EM+ ++PN TY
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + + ++ M GC P+ + L+ + +KV+ A++++ +M +KG
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219
+ L +GK A++ F M+ +G P+
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 110/226 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PDIV++ LI+ +C ++E+A +V +M + I PDV+ YT+II L G
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH 192
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A + +M+ YG PD Y + + C + R RDA L+ M ++ + P+ T+N
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + LY M+ PN + L+ + V+ A Q++ M KG
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ L + C K+ +A K F EM +KG + +++ +
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 38/218 (17%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PD+V+Y LI+ +CK ++V+ A KI +M + ++ + I+YT++I G G VG+
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATT 117
P+ A++V M G P+ YN + C +++ A + ++M ++ G++PN T
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWT 427
Query: 118 YNLFFRVFYWSNDL-----------------------------------RSSWNLYCRMM 142
YN+ ++ L +++ NL+C +
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
G PN + ++ R+ A L+ M E G
Sbjct: 488 SKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 97/223 (43%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
MGV D+ + N L++ +C+ Q A + KM PD++++TS+I G L + ++
Sbjct: 101 MGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEE 160
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A ++ +M E G PD Y I + C + A L D+M G+ P+ Y
Sbjct: 161 AMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN 220
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
S R + +L M P+ + L+ ++ K A +L+N+M+
Sbjct: 221 GLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
I L + C G + EA + F M KG P V++ +
Sbjct: 281 NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSL 323
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 95/219 (43%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P I+ + L++V K ++ + + + ++ +S D+ + ++ QP A
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G PD + + I +C+ R+ +A ++++MVE G+ P+ Y
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ + + +L+ +M G P+ LV + A L M ++ ++
Sbjct: 190 NGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ L D GK ++AE+ + EMI P+ ++ +
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
Query: 25 QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84
Q +A + M + P +I +T ++ + + + D ++ ++ G D N
Sbjct: 52 QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111
Query: 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144
+ +C + + AS + +M++ G P+ T+ F N + + ++ +M+
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 145 GCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203
G P+ ++ LCK V AL L++ M G +++ L + LC+ G+ +
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGH-VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 204 AEKSFLEMIEKGHKPSQVSFRRI 226
A+ M ++ KP ++F +
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNAL 253
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 2 REM-GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
REM GV P+I +YN L+ C + ++EKA + E MR ++ +I+YT II G+ G+
Sbjct: 416 REMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGK 475
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRD-ASGLMDEMVEKGLS 112
A ++ + G P+ Y I + L+ A L +M E G+S
Sbjct: 476 VKNAVNLFCSLPSKGVKPNVVTYTTMISGL-FREGLKHEAHVLFRKMKEDGVS 527
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 109 KGLSPNATTYNLFFRVFYW-----------SNDLRS-----SWNLYCRMMGTGCLPNTQS 152
KG S A +++ + +W N L S + +L+ M+ + LP+
Sbjct: 15 KGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIID 74
Query: 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
L+ + + +K ++ + L + + G + ++L + C + A +M+
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134
Query: 213 EKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
+ G +P V+F + L N+ E ++ N+M G
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 117/242 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ PD+V+YN +I CK + ++KA +++ M + PD ++Y SI+ G GQ
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 281
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
P +A LK+M+ G PD Y+ + C R +A + D M ++GL P TTY
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGT 341
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + L L M+ G P+ L+ +Q KV+ A+ +++ M ++G
Sbjct: 342 LLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ + +LC G++ +A F +MI++G P + + + + NK E +
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461
Query: 241 NL 242
L
Sbjct: 462 EL 463
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 1/245 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR+ G+ P+ V+Y +I + CK +VE A E+M DE +SP I Y S+I GL +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A +++ EM + G + +N+ I ++C R+ ++ L + MV G+ PN TYN
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + + L M+ G PNT + L+ + ++E AL L+ +M G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEAL 239
I+ +++ L + A++ ++ + E G + ++ I L + +AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 240 QNLSN 244
Q N
Sbjct: 637 QMFQN 641
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 112/226 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + GV PD ++YN ++ YC Q ++A ++KMR + + PDV++Y+ ++ L G+
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+AR + M + G P+ Y ++ Y L + GL+D MV G+ P+ +++
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + ++ +M G PN + ++ + + +VE A+ + M+++G
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+V + L LC K AE+ LEM+++G + + F I
Sbjct: 437 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 5/227 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE---DISPDVISYTSIIGGLGL 57
M E+G P++ SYN L+ C + + ++A +++ M D+ PDV+SYT++I G
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
G DKA EM + G PD YN+ I C A+ + A +++ MV+ G+ P+ T
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDM 176
YN + S + + +M G P+ + L+ LCK +E A ++++ M
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME-ARKIFDSM 327
Query: 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++G I L G LVE M+ G P F
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 122/253 (48%), Gaps = 6/253 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR GV+PD+V+Y+ L+D CK+ + +A KI + M + P++ +Y +++ G G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ +L M G +PD ++ I Y ++ A + +M ++GL+PNA TY
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNT---QSCMFLVKLCKRQEKVEIALQLWNDMV 177
+ S + + + +M+ G P S + + C + E+ E +L +M+
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE---ELILEML 468
Query: 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQE 237
++G + + + D C G+++E+EK F M+ G KP+ +++ + LA K +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528
Query: 238 ALQNLSNKMALFG 250
L + M G
Sbjct: 529 EAMKLLSGMVSVG 541
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 41/258 (15%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
V PD+ +Y LI C+ +++ + + + + D I++T ++ GL + A
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 66 D-VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATTYNLF 121
D VL+ M E GC P+ +YN ++ C R ++A L+ M + G P+ +Y
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F+ D +++ Y M+ G LP+ + + LCK Q ++ A+++ N MV+ G
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQ-AMDKAMEVLNTMVKNG 261
Query: 181 -----------FGSY------------------------ILVSDVLFDLLCDMGKLVEAE 205
Y ++ +L D LC G+ +EA
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 206 KSFLEMIEKGHKPSQVSF 223
K F M ++G KP ++
Sbjct: 322 KIFDSMTKRGLKPEITTY 339
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +G+KP+ V+Y+ LI+ YCK ++E A + ++M +SPD+I+Y I+ GL +
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG------LMDEMVE------ 108
A+++ + E G + + YN + C K DA LMD +E
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656
Query: 109 -----------------------KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
GL PN TY L L L+ M G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK----- 200
C ++ F+V+ ++ ++ A + + EK F + + DLL GK
Sbjct: 717 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSG-GKYQEYY 775
Query: 201 --LVEAEKSFLE 210
L E KSF+E
Sbjct: 776 RFLPEKYKSFIE 787
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 1 MREMGVK---PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57
MR+M ++ P+++++ +IDV+ K+ + +A K+ E+M + PDV +Y S+I GL +
Sbjct: 232 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
G+ D+A+ +L M GC PD YN I +C +KR+ + + L EM ++GL + T
Sbjct: 292 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 351
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDM 176
YN + ++ + ++ ++ RM PN ++ + L LC +VE AL L+ +M
Sbjct: 352 YNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNW-RVEKALVLFENM 407
Query: 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ I +++ +C +G + +A F + KG KP VS+
Sbjct: 408 QKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSY 454
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 116/246 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G +PD+V+ + LI+ +C+ +V A +V KM + PDV+ Y +II G +G
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGL 189
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A ++ M+ G DA YN+ + C + R DA+ LM +MV + + PN T+
Sbjct: 190 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
VF + LY M P+ + L+ +V+ A Q+ + MV KG
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
++ + L + C ++ E K F EM ++G +++ I A + +A Q
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369
Query: 241 NLSNKM 246
+ ++M
Sbjct: 370 EIFSRM 375
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 102/223 (45%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ D+ SYN +I+ C+ + A +V KM PDV++ +S+I G +
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A D++ +M+E G PD YN I C + DA L D M G+ +A TYN
Sbjct: 155 VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S + L M+ +PN + ++ + ++ K A++L+ +M +
Sbjct: 215 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L + LC G++ EA++ M+ KG P V++
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 317
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PD+V+YN LI+ +CK ++V++ K+ +M + D I+Y +II G G+
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
PD A+++ M P+ Y+ + C+ R+ A L + M + + + TTYN+
Sbjct: 365 PDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
++ +W+L+ + G P+ S ++ R+ + + + L+ M E G
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481
Query: 181 F 181
Sbjct: 482 L 482
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
M +P+I +Y+ L+ C + +VEKA + E M+ +I D+ +Y +I G+ +G +
Sbjct: 374 RMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVE 433
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP 113
A D+ + + G PD +Y I +C ++ + L +M E GL P
Sbjct: 434 DAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 1/236 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV ++ ++ K + + + M I D+ SY +I L + A V
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
+ +M ++G PD ++ I +C R+ DA L+ +M E G P+ YN
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ + L+ RM G + + LV + A +L DMV + ++
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNL 242
+ D+ GK EA K + EM + P ++ I L EA Q L
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M++ ++ DI +YN +I CK VE A+ + + + + PDV+SYT++I G Q
Sbjct: 407 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQ 466
Query: 61 PDKARDVLKEMKEYGCYP 78
DK+ + ++M+E G P
Sbjct: 467 WDKSDLLYRKMQEDGLLP 484
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
S +L +L+C+M+ + LP+ ++ + + ++ + L++ M G G +
Sbjct: 47 SMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYS 106
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
+++ + LC + V A +M++ G++P V+
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVT 141
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 4/261 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V++N LID + K+ + +A K+ + M I PD+ +Y S++ G + +
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DKA+ + + M C+PD YN I+ +C +KR+ D + L EM +GL + TY
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + D ++ ++ +M+ G P+ + L+ K+E AL++++ M +
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
I + + + +C GK+ + F + KG KP+ V++ I L QEA
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 240 QNLSNKMALFGPSMIPKREEY 260
L KM GP +P Y
Sbjct: 561 A-LLKKMKEDGP--LPNSGTY 578
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++ D+V +N +ID CK R V+ A + ++M + I P+V++Y+S+I L G+
Sbjct: 251 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 310
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E P+ +NA I + + +A L D+M+++ + P+ TYN
Sbjct: 311 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + ++ M+ C P+ + L+K + ++VE +L+ +M +G
Sbjct: 371 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 430
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ L L G A+K F +M+ G P +++
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 473
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 105/226 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +P IV+ + L++ YC +++ A +V++M + PD I++T++I GL L +
Sbjct: 146 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M + GC P+ Y + C A L+++M + + +N
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNT 265
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + NL+ M G PN + L+ + A QL +DM+EK
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L D GK VEAEK + +MI++ P ++ +
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 3/239 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV +N L+ K ++ + + EKM+ +I + +Y +I Q A +
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G P ++ + YC KR+ DA L+D+MVE G P+ T+ +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC PN + +V LCKR + ++AL L N M + ++
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD-TDLALNLLNKMEAAKIEADVV 261
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSN 244
+ + + D LC + +A F EM KG +P+ V++ I L +A Q LS+
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 104/226 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G +P++V+Y +++ CK + A ++ KM I DV+ + +II L
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A ++ KEM+ G P+ Y++ I C R DAS L+ +M+EK ++PN T+N
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + LY M+ P+ + LV ++++ A Q++ MV K
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L C ++ + + F EM +G V++ +
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 2/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ + + + +YN LI+ +C+ Q+ A ++ KM P +++ +S++ G +
Sbjct: 111 MQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD + I + + +A L+D MV++G PN TY +
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEK 179
D + NL +M + ++ LCK + V+ AL L+ +M K
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH-VDDALNLFKEMETK 289
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G ++ L LC G+ +A + +MIEK P+ V+F +
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV PDI++Y+ L+D C + ++EKA ++ + M+ +I D+ YT++I G+ G+ D
Sbjct: 465 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + G P+ YN I C + L++A L+ +M E G PN+ TYN R
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 125 FYWSNDLRSSWNLY-----CRMMG 143
D +S L CR +G
Sbjct: 585 HLRDGDKAASAELIREMRSCRFVG 608
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 47/244 (19%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
PD+V+YN LI +CK ++VE ++ +M + D ++YT++I GL G D A+ V
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMD---------------EMVE---- 108
K+M G PD Y+ + C +L A + D M+E
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 109 ----------------KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152
KG+ PN TYN L+ ++ L +M G LPN+ +
Sbjct: 518 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT 577
Query: 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGF----GSYILVSDVLFDLLCDMGKLVEAEKSF 208
L++ R + +L +M F + LV+++L D G+L +KSF
Sbjct: 578 YNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHD-----GRL---DKSF 629
Query: 209 LEMI 212
L+M+
Sbjct: 630 LDML 633
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 2/177 (1%)
Query: 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYC 139
+ Y +RN +L DA GL MV+ P+ +N +L
Sbjct: 50 SGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGE 109
Query: 140 RMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199
+M + + L+ R+ ++ +AL L M++ G+ I+ L + C
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 200 KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG--PSMI 254
++ +A +M+E G++P ++F + + L NK L ++M G P+++
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 226
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 117/223 (52%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V+++ LID + K+ ++ +A K+ ++M I PD+ +Y+S+I G + +
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + + M C+P+ YN I+ +C AKR+ + L EM ++GL N TY
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F+ + + ++ ++ +M+ G LP+ + L+ KVE AL ++ +
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I +++ + +C GK+ + F + KG KP+ V++
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PDIV+ N L++ +C ++ A +V +M + PD ++ ++I GL +
Sbjct: 142 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNR 201
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M GC PD Y + C + A L+ +M + + P YN
Sbjct: 202 ASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNT 261
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
++ + NL+ M G PN + L++ + A +L +DM+E+
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ L D GKLVEAEK + EMI++ P ++
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV ++ L+ K + + + E+M++ IS ++ +Y+ +I Q A V
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G PD N+ + +C R+ DA L+ +MVE G P++ T+N +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC P+ + +V LCKR + +++AL L M + ++
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD-IDLALSLLKKMEQGKIEPGVV 257
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + + D LC+ + +A F EM KG +P+ V++ +
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G +PD+V+Y +++ CK ++ A +++KM I P V+ Y +II L + A
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ EM G P+ YN+ IR C R DAS L+ +M+E+ ++PN T++
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
F L + LY M+ P+ + L+ ++++ A ++ M+ K
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L C ++ E + F EM ++G + V++
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ ++ +Y+ LI+ +C+ Q+ A ++ KM PD+++ S++ G +
Sbjct: 107 MQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR 166
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD+ +N I R +A L+D MV KG P+ TY +
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI 226
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
D+ + +L +M P ++ + V AL L+ +M KG
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L LC+ G+ +A + +MIE+ P+ V+F
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 114/228 (50%), Gaps = 10/228 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + ++P +V YN +ID C + V A + +M ++ I P+V++Y S+I L G+
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E P+ ++A I + +L +A L DEM+++ + P+ TY+
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + +++ M+ C PN + L+K + ++V+ ++L+ +M ++G
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 181 F-GSYILVSDVLFDLL----CDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G+ + + ++ CD ++V F +M+ G P +++
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIV-----FKQMVSDGVLPDIMTY 469
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV PDI++Y+ L+D C + +VE A + E ++ + PD+ +Y +I G+ G+ +
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + G P+ Y + +C +A L EM E+G P++ TYN R
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Query: 125 FYWSNDLRSSWNLY-----CRMMG 143
D +S L CR +G
Sbjct: 581 HLRDGDKAASAELIREMRSCRFVG 604
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GVKP++V+Y ++ +C+ E+A + +M++E PD +Y ++I G +
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAAS 590
Query: 65 RDVLKEMKEYGCYPDAAA 82
++++EM+ DA+
Sbjct: 591 AELIREMRSCRFVGDAST 608
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%)
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
D A ++ +M + +P ++ + + L ++M G+S N TY++
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181
F + L + + +MM G P+ + L+ ++ A+ L MVE G+
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ L L + EA M+ KG +P V++
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 4/261 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V++N LID + K+ + +A K+ + M I PD+ +Y S+I G + +
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 305
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DKA+ + + M C+PD YN I+ +C +KR+ D + L EM +GL + TY
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + D ++ ++ +M+ G P+ + L+ K+E AL++++ M +
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
I + + + +C GK+ + F + KG KP+ V++ I L QEA
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 240 QNLSNKMALFGPSMIPKREEY 260
L KM GP +P Y
Sbjct: 486 A-LLKKMKEDGP--LPDSGTY 503
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++ D+V +N +ID CK R V+ A + ++M + I P+V++Y+S+I L G+
Sbjct: 176 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 235
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E P+ +NA I + + +A L D+M+++ + P+ TYN
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + ++ M+ C P+ + L+K + ++VE +L+ +M +G
Sbjct: 296 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ L L G A+K F +M+ G P +++
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 398
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 105/226 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +P IV+ + L++ YC +++ A +V++M + PD I++T++I GL L +
Sbjct: 71 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 130
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M + GC P+ Y + C + A L+++M + + +N
Sbjct: 131 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 190
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + NL+ M G PN + L+ + A QL +DM+EK
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L D GK VEAEK +MI++ P ++ +
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 3/239 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P I +N L+ K ++ + + EKM+ IS ++ +Y +I Q A +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G P ++ + YC KR+ DA L+D+MVE G P+ T+ +
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC PN + +V LCKR + +++A L N M + ++
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD-IDLAFNLLNKMEAAKIEADVV 186
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSN 244
+ + + D LC + +A F EM KG +P+ V++ I L +A Q LS+
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 2/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ ++ +YN LI+ +C+ Q+ A ++ KM P +++ +S++ G +
Sbjct: 36 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 95
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD + I + + +A L+D MV++G PN TY +
Sbjct: 96 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 155
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEK 179
D+ ++NL +M + ++ LCK + V+ AL L+ +M K
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH-VDDALNLFKEMETK 214
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G ++ L LC G+ +A + +MIEK P+ V+F +
Sbjct: 215 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 261
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV PDI++Y+ L+D C + ++EKA ++ + M+ +I D+ YT++I G+ G+ D
Sbjct: 390 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 449
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + G P+ YN I C + L++A L+ +M E G P++ TYN R
Sbjct: 450 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRA 509
Query: 125 FYWSNDLRSSWNLY-----CRMMG 143
D +S L CR +G
Sbjct: 510 HLRDGDKAASAELIREMRSCRFVG 533
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ D V+Y LI D + A K+ ++M + + PD+++Y+ ++ GL G+
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 410
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA +V M++ D Y I C A ++ D L + KG+ PN TYN
Sbjct: 411 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 470
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
L+ ++ L +M G LP++ + L++ R + +L +M
Sbjct: 471 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCR 530
Query: 181 F----GSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
F + LV+++L D G+L +KSFL+M+
Sbjct: 531 FVGDASTIGLVANMLHD-----GRL---DKSFLDML 558
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 140 RMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199
+M G N + L+ R+ ++ +AL L M++ G+ I+ L + C
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 94
Query: 200 KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG--PSMI 254
++ +A +M+E G++P ++F + + L NK L ++M G P+++
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 151
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 123/251 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V++N LID + K+ ++ +A K+ ++M I PD+ +Y+S+I G + +
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 380
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + + M C+P+ YN I +C AKR+ + L EM ++GL N TY
Sbjct: 381 LDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTT 440
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F+ + D ++ ++ +M+ G PN + L+ + K+E A+ ++ +
Sbjct: 441 LIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 500
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
I +++ + +C GK+ + F + KG KP + + + + +E
Sbjct: 501 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEAD 560
Query: 241 NLSNKMALFGP 251
L KM GP
Sbjct: 561 ALFRKMREDGP 571
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +P IV+ + L++ YC +++ A +V++M + PD I++T++I GL L +
Sbjct: 146 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M + GC P+ Y + C + A L+++M + N Y+
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST 265
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ NL+ M G PN + L+ E+ A +L +DM+E+
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L D GKLVEAEK + EMI++ P ++
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 109/223 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G +P++V+Y +++ CK ++ A+ ++ KM I +V+ Y+++I L
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 275
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A ++ EM+ G P+ Y++ I C +R DAS L+ +M+E+ ++PN T+N
Sbjct: 276 EDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F L + LY M+ P+ + L+ ++++ A ++ M+ K
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L + C ++ E + F EM ++G + V++
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTY 438
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 2/217 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P I +N L+ K ++ + + EKM+ IS ++ +Y +I Q A +
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G P ++ + YC KR+ DA L+D+MVE G P+ T+ +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC PN + +V LCKR + +++A L N M + ++
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD-IDLAFNLLNKMEAAKIEANVV 261
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + D LC +A F EM KG +P+ +++
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 106/224 (47%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ ++ +YN LI+ +C+ Q+ A ++ KM P +++ +S++ G +
Sbjct: 111 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD + I + + +A L+D MV++G PN TY +
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEK 179
D+ ++NL +M N ++ LCK + + + AL L+ +M K
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDD-ALNLFTEMENK 289
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G ++ L LC+ + +A + +MIE+ P+ V+F
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTF 333
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV P+I++YN L+D CK+ ++EKA + E ++ + P + +Y +I G+ G+ +
Sbjct: 465 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 524
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
D+ + G PD YN I +C +A L +M E G P++ T
Sbjct: 525 WDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Query: 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYC 139
+ Y +RN + +L DA GL MV+ P+ +N +L
Sbjct: 50 SGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGE 109
Query: 140 RMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199
+M G N + L+ R+ ++ +AL L M++ G+ I+ L + C
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 200 KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG--PSMI 254
++ +A +M+E G++P ++F + + L NK L ++M G P+++
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 226
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 1/247 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E D+++YN L+D CK V+ YK+ ++M + + PD S+ I G
Sbjct: 234 MLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGD 293
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A VL MK Y P+ +N I+ C +++ DA L+DEM++KG +P+ TYN
Sbjct: 294 VHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNS 353
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
++ + L RM T CLP+ + ++KL R + + A ++W M E+
Sbjct: 354 IMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERK 413
Query: 181 FGSYILVSDVLFD-LLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL 239
F + V+ L+ GKL EA + F MI++G P + ++ + + + +
Sbjct: 414 FYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVV 473
Query: 240 QNLSNKM 246
L+ KM
Sbjct: 474 DVLAGKM 480
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 101/230 (43%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+KP + + L+ C + V A + K + I P +Y+ ++ G +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
AR V EM E C D AYNA + C + + + EM GL P+A ++ +
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + + D+ S++ + RM +PN + ++K + EKV+ A L ++M++KG
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230
+ + CD ++ A K M P + ++ + L+
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLL 393
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 120/239 (50%), Gaps = 1/239 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + PD+ +++ LID + K+ ++ +A K+ ++M I P +++Y+S+I G + +
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + + M C+PD YN I+ +C KR+ + + EM ++GL N TYN+
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + D + ++ M+ G PN + L+ + K+E A+ ++ +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEA 238
I +++ + +C GK+ + F + KG KP V++ I +K+EA
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 106/226 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +P+IV+ + L++ YC +++ +A +V++M P+ +++ ++I GL L +
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M GC PD Y + C A L+++M + L P YN
Sbjct: 202 ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 261
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + NL+ M G PN + L+ + A +L +DM+E+
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ L D GKLVEAEK + EM+++ PS V++ +
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 116/226 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + ++P ++ YN +ID CK + ++ A + ++M + I P+V++Y+S+I L G+
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E PD ++A I + +L +A L DEMV++ + P+ TY+
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + ++ M+ C P+ + L+K + ++VE ++++ +M ++G
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ ++L L G A++ F EM+ G P+ +++ +
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 106/219 (48%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G +PD+V+Y +++ CK + A+ ++ KM + P V+ Y +II GL D A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ KEM+ G P+ Y++ I C R DAS L+ +M+E+ ++P+ T++
Sbjct: 276 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
F L + LY M+ P+ + L+ ++++ A Q++ MV K
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L C ++ E + F EM ++G + V++
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 2/220 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P I+ ++ L+ K + + + E+M++ I + +Y+ +I Q A V
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G P+ ++ + YC +KR+ +A L+D+M G PN T+N +
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC P+ + +V LCKR + ++A L N M + +L
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD-TDLAFNLLNKMEQGKLEPGVL 257
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + + D LC + +A F EM KG +P+ V++ +
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
PD+V+YN LI +CK ++VE+ ++ +M + + ++Y +I GL G D A+++
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
KEM G P+ YN + C +L A + + + + P TYN+
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKG 180
+ + W+L+C + G P+ + ++ C++ K E A L+ +M E G
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE-ADALFKEMKEDG 566
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ + +Y+ LI+ +C+ Q+ A ++ KM P++++ +S++ G +
Sbjct: 107 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ +M G P+ +N I + + +A L+D MV KG P+ TY +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
D ++NL +M P ++ LCK + ++ AL L+ +M K
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH-MDDALNLFKEMETK 285
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G ++ L LC+ G+ +A + +MIE+ P +F
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV P+I++YN L+D CK+ ++EKA + E ++ + P + +Y +I G+ G+ +
Sbjct: 461 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + G PD AYN I +C +A L EM E G PN+ YN R
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Query: 125 FYWSNDLRSSWNLYCRMMGTG 145
D +S L M G
Sbjct: 581 RLRDGDREASAELIKEMRSCG 601
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 71/185 (38%)
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
D A + EM + +P ++ + + L ++M G+ N TY++
Sbjct: 63 DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSIL 122
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181
F + L + + +MM G PN + L+ +++ A+ L + M G+
Sbjct: 123 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQN 241
+ + L L K EA M+ KG +P V++ + + + N
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 242 LSNKM 246
L NKM
Sbjct: 243 LLNKM 247
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 113/218 (51%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ PD+ +YN LI Y K+ V A +++ MR++ P+V SYT ++ G +G+ D+A
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+VL EM G P+ +N I +C R+ +A + EM KG P+ T+N
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
++++ + L M+ G + NT + L+ R+ +++ A +L N+MV +G
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
+ + L LC G++ +A F +M+ GH PS +S
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS 601
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+KP+ V +NCLI +CK+ ++ +A +I +M + PDV ++ S+I GL V + A
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+L++M G + YN I + +++A L++EMV +G + TYN +
Sbjct: 514 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ ++ + +L+ +M+ G P+ SC L+ R VE A++ +MV +G
Sbjct: 574 LCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 633
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
I+ + L + LC G++ + F ++ +G P V+F +
Sbjct: 634 IVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 111/226 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR G KP++ SY L+D +CK ++++AY ++ +M + + P+ + + +I +
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ +EM GC PD +N+ I C ++ A L+ +M+ +G+ N TYN
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F +++ + L M+ G + + L+K R +V+ A L+ M+ G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ ++L + LC G + EA + EM+ +G P V+F +
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSL 640
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 6/238 (2%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
MG PD ++N +I CK ++ +A K+V +M +PD I+Y ++ GL +G+ D
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-GLSPNATTYNLFF 122
A+D+ + + P+ +N I + RL DA ++ +MV G+ P+ TYN
Sbjct: 341 AKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG 182
++ + + + M GC PN S LV + K++ A + N+M G
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
+ + L C ++ EA + F EM KG KP +F I L E+ + AL
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 9/245 (3%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE-DISPDVISYTSIIGGL---GLVGQPD 62
KP+IV +N LI + +++ A ++ M I PDV +Y S+I G GLVG
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGL-- 407
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
A +VL +M+ GC P+ +Y + +C ++ +A +++EM GL PN +N
Sbjct: 408 -ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGF 181
F + + + ++ M GC P+ + L+ LC+ E ++ AL L DM+ +G
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-IKHALWLLRDMISEGV 525
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQN 241
+ + + L + G++ EA K EM+ +G ++++ + + A + + ++
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 242 LSNKM 246
L KM
Sbjct: 586 LFEKM 590
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 110/250 (44%), Gaps = 32/250 (12%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ P + ++ ++ +C +++ A ++ M P+ + Y ++I L + ++A
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY------- 118
+L+EM GC PDA +N I C R+ +A+ +++ M+ +G +P+ TY
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332
Query: 119 ----------NLFFRV----FYWSNDLRSSWNLYCRM-----------MGTGCLPNTQSC 153
+LF+R+ N L + + R+ G +P+ +
Sbjct: 333 CKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392
Query: 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213
L+ ++ V +AL++ +DM KG + +L D C +GK+ EA EM
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA 452
Query: 214 KGHKPSQVSF 223
G KP+ V F
Sbjct: 453 DGLKPNTVGF 462
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 7/251 (2%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G PD ++Y L++ CK +V+ A + ++ P+++ + ++I G G+ D A
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDA 372
Query: 65 RDVLKEM-KEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
+ VL +M YG PD YN+ I Y + A ++ +M KG PN +Y +
Sbjct: 373 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVD 432
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
F + ++N+ M G PNT L+ ++ ++ A++++ +M KG
Sbjct: 433 GFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKP 492
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNL 242
+ + L LC++ ++ A +MI +G + V++ I A + +EA + L
Sbjct: 493 DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA-RKL 551
Query: 243 SNKMALFGPSM 253
N+M G +
Sbjct: 552 VNEMVFQGSPL 562
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 6/242 (2%)
Query: 1 MREM---GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57
REM G KPD+ ++N LI C+ +++ A ++ M E + + ++Y ++I
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
G+ +AR ++ EM G D YN+ I+ C A + A L ++M+ G +P+ +
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS 601
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177
N+ S + + M+ G P+ + L+ R ++E L ++ +
Sbjct: 602 CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
Query: 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQE 237
+G + + L LC G + +A E IE G P+ R L++ QE
Sbjct: 662 AEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNH---RTWSILLQSIIPQE 718
Query: 238 AL 239
L
Sbjct: 719 TL 720
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G + Y LI + + + +++ +M+DE I + SI+ G P +
Sbjct: 106 GYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQT 165
Query: 65 RDVLKEMKE-YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
++ EM+ Y C P +YN + + A+ + +M+ + + P T+ + +
Sbjct: 166 TRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 225
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG-FG 182
F N++ S+ +L M GC+PN+ L+ + +V ALQL +M G
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 285
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+DV+ LC ++ EA K M+ +G P +++
Sbjct: 286 DAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFAPDDITY 325
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 108/246 (43%), Gaps = 13/246 (5%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARD 66
+P SYN ++++ + A + M I P + ++ ++ V + D A
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238
Query: 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126
+L++M ++GC P++ Y I + R+ +A L++EM G P+A T+N
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298
Query: 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186
+ + + + RM+ G P+ + +L+ + +V+ A L+ + + I+
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIV 354
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEK-GHKPSQVSFRRI------KALMELANKQEAL 239
+ + L G+L +A+ +M+ G P ++ + + L+ LA E L
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA--LEVL 412
Query: 240 QNLSNK 245
++ NK
Sbjct: 413 HDMRNK 418
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 131/261 (50%), Gaps = 4/261 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V+++ LID + K+ ++ +A K+ ++M I PD+ +Y+S+I G + +
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + + M C+P+ Y+ I+ +C AKR+ + L EM ++GL N TY
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F+ + D ++ ++ +M+ G PN + L+ + K+ A+ ++ +
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
I +++ + +C GK+ + + F + KG P+ +++ I +K+EA
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA- 557
Query: 240 QNLSNKMALFGPSMIPKREEY 260
+L KM GP +P Y
Sbjct: 558 DSLLKKMKEDGP--LPNSGTY 576
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 107/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PDIV+ + L++ YC +++ A +V++M + PD ++T++I GL L +
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ +M + GC PD Y + C + A L+ +M + + + YN
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + NL+ M G P+ + L+ + A +L +DM+E+
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ L D GKLVEAEK + EMI++ P ++ +
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 2/220 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV +N L+ K + E + E+M+ IS D+ +Y+ I Q A V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G PD ++ + YC +KR+ DA L+D+MVE G P+ T+ +
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L +M+ GC P+ + +V LCKR + +++AL L M + + ++
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD-IDLALSLLKKMEKGKIEADVV 259
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + + D LC + +A F EM KG +P ++ +
Sbjct: 260 IYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 106/226 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G +PD+V+Y +++ CK ++ A +++KM I DV+ Y +II GL
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A ++ EM G PD Y++ I C R DAS L+ +M+E+ ++PN T++
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F L + LY M+ P+ + L+ ++++ A ++ M+ K
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ L C ++ E + F EM ++G + V++ +
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +G+ D+ +Y+ I+ +C+ Q+ A ++ KM PD+++ +S++ G +
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A ++ +M E G PD + I + + +A L+D+MV++G P+ TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
D+ + +L +M + ++ LCK + ++ AL L+ +M K
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH-MDDALNLFTEMDNK 287
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G + L LC+ G+ +A + +MIE+ P+ V+F
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 331
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +GV P+I++YN L+D CK+ ++ KA + E ++ + PD+ +Y +I G+ G+
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ ++ + G P+ AYN I +C +A L+ +M E G PN+ TYN
Sbjct: 519 VEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNT 578
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTG 145
R D +S L M G
Sbjct: 579 LIRARLRDGDREASAELIKEMRSCG 603
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 4/212 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ + V+Y LI + + R + A + ++M + P++++Y ++ GL G+
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
KA V + ++ PD YN I C A ++ D L + KG+SPN YN
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + +L +M G LPN+ + L++ R E + +L +M G
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCG 603
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
F ++ ++L D G+L +KSFL+M+
Sbjct: 604 FAGDASTIGLVTNMLHD-GRL---DKSFLDML 631
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 69/165 (41%)
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
D A D+ +M + +P +N + + L ++M G+S + TY++F
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181
F + L + + +MM G P+ + L+ +++ A+ L + MVE G+
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
L L K EA +M+++G +P V++ +
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTV 229
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 64/156 (41%)
Query: 95 RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCM 154
++ DA L +MV+ P+ +N N +L +M G + +
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214
+ R+ ++ +AL + M++ G+ I+ L + C ++ +A +M+E
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 215 GHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
G+KP +F + + L NK L ++M G
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 1/226 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+KP+I +Y LID C + EKA +++ +M ++ + P+VI+Y ++I G G
Sbjct: 349 MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A DV++ M+ P+ YN I+ YC + A G++++M+E+ + P+ TYN
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNS 467
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S + S++ L M G +P+ + ++ + ++VE A L++ + +KG
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+++ L D C GK+ EA +M+ K P+ ++F +
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 573
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 118/233 (50%), Gaps = 1/233 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ PD +Y +ID CK ++VE+A + + + + ++P+V+ YT++I G G+
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A +L++M C P++ +NA I C +L++A+ L ++MV+ GL P +T +
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
D +++ + +M+ +G P+ + ++ R+ ++ A + M E G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF-RRIKALMEL 232
+ L D+G+ A M + G +PSQ +F IK L+E+
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEM 720
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 1/213 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E V P+I +YN +++ YCK VE+A + V K+ + + PD +YTS+I G
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A V EM GC + AY I C+A+R+ +A L +M + P TY +
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ S + NL M TG PN + L+ Q K E A +L M+EKG
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213
++ + L + C G ++E +E++E
Sbjct: 389 LMPNVITYNALINGYCKRG-MIEDAVDVVELME 420
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E V PD+V+YN LID C+ + AY+++ M D + PD +YTS+I L +
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A D+ +++ G P+ Y A I YC A ++ +A ++++M+ K PN+ T+N
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
L+ + L +M+ G P + L+ + + A + M+ G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
C G+L++AE +M E G P ++ +
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 105/258 (40%), Gaps = 36/258 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+ P++++YN LI+ YCK +E A +VE M +SP+ +Y +I G
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY-CKSN 442
Query: 61 PDKARDVLKEMKEYGCYPDAAAYN-----------------------------------A 85
KA VL +M E PD YN +
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Query: 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
I + C +KR+ +A L D + +KG++PN Y + + + + + +M+
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205
CLPN+ + L+ K++ A L MV+ G + +L L G A
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAY 622
Query: 206 KSFLEMIEKGHKPSQVSF 223
F +M+ G KP ++
Sbjct: 623 SRFQQMLSSGTKPDAHTY 640
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 118/307 (38%), Gaps = 89/307 (28%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG- 59
+ + GV P++V Y LID YCK +V++A+ ++EKM ++ P+ +++ ++I GL G
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 60 ----------------QP------------------DKARDVLKEMKEYGCYPDAAAYNA 85
QP D A ++M G PDA Y
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
I+ YC RL DA +M +M E G+SP+ TY+ + + ++++ RM TG
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 146 CLPNTQSCMFLVK----------------LCKRQEKVEI--ALQLWNDMVE--------- 178
C P+ + + L+K LC +E ++L MVE
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762
Query: 179 ---------------------------KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211
+G LV + L C + K EA K +M
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822
Query: 212 IEKGHKP 218
I GH P
Sbjct: 823 ICVGHLP 829
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 57/269 (21%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G KPD +Y I YC++ ++ A ++ KMR+ +SPD+ +Y+S+I G G +GQ
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG------------------L 102
+ A DVLK M++ GC P + + I++ K + L
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747
Query: 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLY-----------------------C 139
+++MVE ++PNA +Y +LR + ++ C
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807
Query: 140 R-------------MMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEKGFGSYI 185
+ M+ G LP +SC L+ L K+ EK E ++ ++++ G+
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK-ERGTSVFQNLLQCGYYEDE 866
Query: 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214
L ++ D + G LVEA ++EK
Sbjct: 867 LAWKIIIDGVGKQG-LVEAFYELFNVMEK 894
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 25 QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEM-KEYGCYPDAAAY 83
+ + +++EKM + ++P+ SY +I G+ VG A V M + G P +
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799
Query: 84 NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143
NA + C K+ +A+ ++D+M+ G P + + Y + +++ ++
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQ 859
Query: 144 TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
G + + ++ +Q VE +L+N M + G
Sbjct: 860 CGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNG 896
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%)
Query: 2 REMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP 61
R G+ P + +N L+ CK ++ +A K+V+ M P + S +I GL G+
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK 847
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
++ V + + + G Y D A+ I + L + M + G ++ TY+L
Sbjct: 848 ERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLL 907
Query: 122 F 122
Sbjct: 908 I 908
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 119/224 (53%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V+++ LID + K+ ++ +A K+ ++M I PD+ +Y+S+I G + +
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + + M C+P+ YN I+ +C AKR+ + L EM ++GL N TYN
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEK 179
+ + + D + ++ +M+ G P+ + + L LCK K+E AL ++ + +
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK-YGKLEKALVVFEYLQKS 494
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I +++ + +C GK+ + F + KG KP+ + +
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 106/223 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PDIV+ + L++ YC +++ +A +V++M + P+ +++ ++I GL L +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ M GC PD Y + C + A L+ +M + + + Y
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
++ + NL+ M G PN + L++ + A +L +DM+E+
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ L D GKLVEAEK + EMI++ P ++
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 110/223 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + ++ D+V Y +ID C + V A + +M ++ I P+V++Y S+I L G+
Sbjct: 246 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 305
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E P+ ++A I + +L +A L DEM+++ + P+ TY+
Sbjct: 306 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + +++ M+ C PN + L+K + ++VE ++L+ +M ++G
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L L G A+K F +M+ G P +++
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 468
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 2/220 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV +N L+ K + + + E+M++ IS D+ SY +I Q A V
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G PD ++ + YC KR+ +A L+D+M PN T+N +
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC P+ + +V LCKR + +++AL L M + + ++
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD-IDLALSLLKKMEKGKIEADVV 256
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + D LC+ + +A F EM KG +P+ V++ +
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P++V+YN LI +CK ++VE+ ++ +M + + ++Y ++I GL G D A+ +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
K+M G PD Y+ + C +L A + + + + + P+ TYN+
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKG 180
+ + W+L+C + G PN ++ C++ K E A L+ +M E G
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE-ADALFREMKEDG 565
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 4/212 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+ + V+YN LI + + A KI +KM + + PD+I+Y+ ++ GL G+
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA V + +++ PD YN I C A ++ D L + KG+ PN Y
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L+ M G LPN+ + L++ R + +L +M G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
F ++ ++L D G+L EKS+LEM+
Sbjct: 601 FVGDASTISMVINMLHD-GRL---EKSYLEML 628
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 4/261 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + P++V++N LID + K+ ++ +A K+ ++M I P++++Y S+I G + +
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 360
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ + M C PD YN I +C AK++ D L +M +GL N TY
Sbjct: 361 LDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTT 420
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F+ ++D ++ ++ +M+ G PN + L+ + K+E A+ ++ + +
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
I +++ + +C GK+ + F + KG KP +++ I + K+EA
Sbjct: 481 MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA- 539
Query: 240 QNLSNKMALFGPSMIPKREEY 260
L KM GP +P Y
Sbjct: 540 YTLFIKMKEDGP--LPDSGTY 558
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 108/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + ++ D+V Y+ +ID CK R V+ A + +M ++ I PDV +Y+S+I L G+
Sbjct: 231 MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 290
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A +L +M E P+ +N+ I + +L +A L DEM+++ + PN TYN
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 350
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + L + ++ M+ CLP+ + L+ + +KV ++L+ DM +G
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG 410
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ L A+ F +M+ G P+ +++ +
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTL 456
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M EMG +PD V++ L+ + + +A +VE+M + PD+++Y ++I GL G+
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
PD A ++L +M++ D Y+ I + C + + DA L EM KG+ P+ TY+
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 121 FFRVF----YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176
WS+ R L M+ PN + L+ ++ K+ A +L+++M
Sbjct: 281 LISCLCNYGRWSDASR----LLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 336
Query: 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+++ I+ + L + C +L EA++ F M+ K P V++ +
Sbjct: 337 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 108/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G P IV+ N L++ +C ++ +A +V++M + PD +++T+++ GL +
Sbjct: 126 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 185
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A +++ M GC PD Y A I C A L+++M + + + Y+
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYST 245
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + NL+ M G P+ + L+ + A +L +DM+E+
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L D GKL+EAEK F EMI++ P+ V++ +
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 351
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G +PD+V+Y +I+ CK + + A ++ KM I DV+ Y+++I L D A
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ EM G PD Y++ I C R DAS L+ +M+E+ ++PN T+N
Sbjct: 260 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDA 319
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
F L + L+ M+ PN + L+ ++++ A Q++ MV K
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L + C K+V+ + F +M +G + V++ +
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 2/220 (0%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P IV ++ L+ K ++ + EKM +S ++ +Y +I L Q A +
Sbjct: 63 PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L +M + G P N+ + +C R+ +A L+D+MVE G P+ T+ +
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYIL 186
N + L RM+ GC P+ + ++ LCKR E ++AL L N M + + ++
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP-DLALNLLNKMEKGKIEADVV 241
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + D LC + +A F EM KG +P ++ +
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV P+I++YN L+D CK+ ++EKA + E ++ + PD+ +Y + G+ G+ +
Sbjct: 445 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDG 504
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + G PD AYN I +C +A L +M E G P++ TYN R
Sbjct: 505 WDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
Query: 125 FYWSNDLRSSWNLY-----CRMMG 143
D +S L CR G
Sbjct: 565 HLRDGDKAASAELIKEMRSCRFAG 588
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ + V+Y LI + + + A + ++M + + P++++Y +++ GL G+
Sbjct: 406 MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA V + +++ PD YN C A ++ D L + KG+ P+ YN
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNT 525
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F ++ L+ +M G LP++ + L++ R + +L +M
Sbjct: 526 MISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCR 585
Query: 181 FG----SYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
F +Y LV+D+L D G+L +K FLE++
Sbjct: 586 FAGDASTYGLVTDMLHD-----GRL---DKGFLEVL 613
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 67/163 (41%)
Query: 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL 147
RN + +L +A L EMV+ P+ ++ + +M G
Sbjct: 38 RNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVS 97
Query: 148 PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKS 207
N + ++ R+ ++ AL + M++ G+G I+ + L + C ++ EA
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVAL 157
Query: 208 FLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
+M+E G++P V+F + + NK L +M + G
Sbjct: 158 VDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 2/186 (1%)
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
D+A D+ EM + +P ++ + K+ ++M G+S N TYN+
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181
+ L + + +MM G P+ + L+ ++ A+ L + MVE G+
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQ 240
+ L L K EA M+ KG +P V++ I L + AL
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL- 225
Query: 241 NLSNKM 246
NL NKM
Sbjct: 226 NLLNKM 231
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%)
Query: 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVL 68
D+VSY+ LI+ +C+ KAY++ E+MR + + +V++YTS+I G A+ +L
Sbjct: 324 DVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLL 383
Query: 69 KEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128
+M E G PD Y + + C + + A G+ ++M+E ++P+A +YN S
Sbjct: 384 DQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRS 443
Query: 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVS 188
+ + L+ M G C P+ + F++ R +K+ A ++W+ M++KGF VS
Sbjct: 444 GRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVS 503
Query: 189 DVLFDLLCDM 198
D L C M
Sbjct: 504 DTLIKASCSM 513
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 4/248 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M ++G +PD+V+YN L++ Y + +++A ++ +M I D SY ++ V
Sbjct: 246 MSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSH 305
Query: 61 PDKARD-VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
PDK + ++KEM+ G + D +Y+ I +C A R A L +EM +KG+ N TY
Sbjct: 306 PDKCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYT 364
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVE 178
+ F + + L +M G P+ L LCK V+ A ++NDM+E
Sbjct: 365 SLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK-SGNVDKAYGVFNDMIE 423
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238
+ + L LC G++ EA K F +M K P +++F+ I + K A
Sbjct: 424 HEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSA 483
Query: 239 LQNLSNKM 246
+ ++M
Sbjct: 484 AYKVWDQM 491
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 37/277 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIV-EKMRDEDISPDVISYTSIIGGLGLVG 59
M GV PD + L+ C R+V+ AY++V E+++ + + Y ++I G G
Sbjct: 175 MIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAG 234
Query: 60 QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
+ +KA + M + GC PD YN + Y L+ A G+M EMV G+ +A +YN
Sbjct: 235 RIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYN 294
Query: 120 LFFR-----------------------------------VFYWSNDLRSSWNLYCRMMGT 144
+ F +++ R ++ L+ M
Sbjct: 295 QLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQK 354
Query: 145 GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204
G + N + L+K R+ +A +L + M E G + + D LC G + +A
Sbjct: 355 GMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKA 414
Query: 205 EKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQ 240
F +MIE P +S+ I L EA++
Sbjct: 415 YGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIK 451
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E+G+ PD + Y ++D CK V+KAY + M + +I+PD ISY S+I GL G+
Sbjct: 386 MTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112
+A + ++MK C PD + I K+L A + D+M++KG +
Sbjct: 446 VTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFT 497
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 105/229 (45%), Gaps = 11/229 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR + YN I V ++ + E A I M+ S +Y+ I GL V +
Sbjct: 35 MRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKK 94
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +L +M+ G PD A+N + C ++ A MV++G P+ +Y +
Sbjct: 95 FDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTI 154
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + + ++ M+ +G P+ ++C LV KV++A ++ + E+
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEM---VAEEI 211
Query: 181 FGSYILVSDVLFDLL----CDMGKLVEAE--KSFLEMIEKGHKPSQVSF 223
+ + +S V+++ L C G++ +AE KS++ I G +P V++
Sbjct: 212 KSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKI--GCEPDLVTY 258
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + PD +SYN LI C+ +V +A K+ E M+ ++ PD +++ IIGGL +
Sbjct: 421 MIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKK 480
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91
A V +M + G D + I+ C
Sbjct: 481 LSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 68/170 (40%)
Query: 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKE 70
++Y I K ++ A ++ ++MR Y IG L + + A + +
Sbjct: 10 LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWD 69
Query: 71 MKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSND 130
MK G Y+ I C K+ L+ +M G P+ +N++ + N
Sbjct: 70 MKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENK 129
Query: 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + M+ G P+ S L+ R KV A+++WN M+ G
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSG 179
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 113/223 (50%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M MG+ PD+++++ LIDVY K+ Q+ +A K +M ++P++++Y S+I GL + G
Sbjct: 245 MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGL 304
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A+ VL + G +P+A YN I YC AKR+ D ++ M G+ + TYN
Sbjct: 305 LDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNT 364
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
++ + + ++ + RM+ G P+ + L+ K+ AL D+ +
Sbjct: 365 LYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSK 424
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I+ +++ LC K+ +A F + KG P +++
Sbjct: 425 TVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITY 467
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M++MG++PD+V+YN LI + +I+ M ISPDVI+++++I G GQ
Sbjct: 210 MKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQ 269
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A+ EM + P+ YN+ I CI L +A +++ +V KG PNA TYN
Sbjct: 270 LLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNT 329
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + + C M G +T + L + + K A ++ MV G
Sbjct: 330 LINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCG 389
Query: 181 FGSYILVSDVLFDLLCDMGKLVEA 204
+ ++L D LCD GK+ +A
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKA 413
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 107/223 (47%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
+G+ D+ S+ LID +C+ ++ A + KM P ++++ S++ G V + +
Sbjct: 108 LGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYE 167
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A ++ ++ G P+ YN I + C ++ A ++ M + G+ P+ TYN
Sbjct: 168 AMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLIT 227
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
+ S S + MM G P+ + L+ + ++ ++ A + +N+M+++
Sbjct: 228 RLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNP 287
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
I+ + L + LC G L EA+K ++ KG P+ V++ +
Sbjct: 288 NIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTL 330
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G P+ V+YN LI+ YCK ++V+ KI+ M + + D +Y ++ G G+ A
Sbjct: 319 GFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAA 378
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
VL M G +PD +N + C ++ A ++++ + TYN+ +
Sbjct: 379 EKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKG 438
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176
++ + +W L+C + G P+ + + ++ +R+ A +L+ M
Sbjct: 439 LCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKM 490
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 115/224 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E +K D V Y+ +ID CK ++ A+ + +M + I+ ++I+Y +IGG G+
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +L++M + P+ ++ I ++ +LR+A L EM+ +G++P+ TY
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F N L + + M+ GC PN ++ L+ + +++ L+L+ M +G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224
+ + + L C++GKL A++ F EM+ + P+ V+++
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 477
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ +I++YN LI +C + + K++ M I+P+V++++ +I G+
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ KEM G PD Y + I +C L A+ ++D MV KG PN T+N+
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ +N + L+ +M G + +T + L++ K+ +A +L+ +MV +
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217
I+ +L D LCD G E+EK+ LE+ EK K
Sbjct: 469 VPPNIVTYKILLDGLCDNG---ESEKA-LEIFEKIEK 501
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 113/221 (51%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
++G +P+ ++++ LI+ C + +V +A ++V++M + PD+I+ +++ GL L G+
Sbjct: 151 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEA 210
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
+A ++ +M EYGC P+A Y + C + + A L+ +M E+ + +A Y++
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG 182
L +++NL+ M G N + L+ + + +L DM+++
Sbjct: 271 DGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN 330
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ VL D GKL EAE+ EMI +G P +++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITY 371
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ P++V+++ LID + K+ ++ +A ++ ++M I+PD I+YTS+I G DKA
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN 388
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
++ M GC P+ +N I YC A R+ D L +M +G+ + TYN + F
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQE--------------KVEIAL 170
L + L+ M+ PN + L+ LC E K+E+ +
Sbjct: 449 CELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 508
Query: 171 QLWNDMVE--------------------KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210
++N ++ KG + +++ LC G L EAE F +
Sbjct: 509 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568
Query: 211 MIEKGHKP 218
M E GH P
Sbjct: 569 MEEDGHAP 576
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 2/220 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ ++ + + +I+ +C+ R++ A+ + K+ P+ I+++++I GL L G+ +A
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+++ M E G PD N + C++ + +A L+D+MVE G PNA TY V
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 237
Query: 125 FYWSNDLRSSWNLYCRMMGTGC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
S + L +M L + + + LCK ++ A L+N+M KG +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK-HGSLDNAFNLFNEMEMKGITT 296
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
I+ ++L C+ G+ + K +MI++ P+ V+F
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV D V+YN LI +C+ ++ A ++ ++M + P++++Y ++ GL G+ +KA
Sbjct: 433 GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKA 492
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ +++++ D YN I C A ++ DA L + KG+ P TYN+
Sbjct: 493 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 552
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
L + L+ +M G P+ + L++ +++L ++ GF
Sbjct: 553 LCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVD 612
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
++ D+L D G+L +KSFL+M+
Sbjct: 613 ASTIKMVIDMLSD-GRL---KKSFLDML 636
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 56 GLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN 114
GLV + D A D+ ++M P ++ K+ L +M KG++ N
Sbjct: 63 GLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHN 122
Query: 115 ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWN 174
T ++ F L +++ +++ G PNT + L+ + +V AL+L +
Sbjct: 123 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182
Query: 175 DMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234
MVE G ++ + L + LC GK EA +M+E G +P+ V++ + +M +
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 235 KQEALQNLSNKM 246
+ L KM
Sbjct: 243 QTALAMELLRKM 254
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 2/229 (0%)
Query: 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82
D + + A + M P VI ++ + + Q D + K+M+ G +
Sbjct: 66 DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 125
Query: 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142
+ I +C ++L A M ++++ G PN T++ + + L RM+
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 143 GTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201
G P+ + LV LC ++ E A+ L + MVE G + + +++C G+
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244
Query: 202 VEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250
A + +M E+ K V + I + + NL N+M + G
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 3/216 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV D+ SY+ +D+ CK + KA K+ ++M+ + DV++Y ++I +G +
Sbjct: 219 GVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFG 278
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
V +EM+E GC P+ A +N I+ C R+RDA ++DEM ++G P++ TY F
Sbjct: 279 IRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSR 338
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+++ S L+ RM+ +G P + + L++ +R ++ L +W M E G
Sbjct: 339 LEKPSEILS---LFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPD 395
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220
+ + D L G L A + EMIE+G P +
Sbjct: 396 SAAYNAVIDALIQKGMLDMAREYEEEMIERGLSPRR 431
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 21/247 (8%)
Query: 34 EKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93
+KM E ++ D+ SY+ + + G+P KA + KEMK D AYN IR +
Sbjct: 213 KKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGAS 272
Query: 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN--TQ 151
+ + + EM E+G PN T+N ++ +R ++ + M GC P+ T
Sbjct: 273 QGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITY 332
Query: 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211
C+F R EK L L+ M+ G + +L G L + M
Sbjct: 333 MCLF-----SRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTM 387
Query: 212 IEKGHKPSQVSFRRI------KALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMS 265
E G P ++ + K ++++A + E + + P+R L E S
Sbjct: 388 KESGDTPDSAAYNAVIDALIQKGMLDMAREYEE--------EMIERGLSPRRRPELVEKS 439
Query: 266 ASDSFSC 272
++ C
Sbjct: 440 LDETLVC 446
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ +K D+V+YN +I + VE ++ +MR+ P+V ++ +II L G+
Sbjct: 250 MKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGR 309
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDAS---GLMDEMVEKGLSPNATT 117
A +L EM + GC PD+ Y C+ RL S L M+ G+ P T
Sbjct: 310 MRDAYRMLDEMPKRGCQPDSITY------MCLFSRLEKPSEILSLFGRMIRSGVRPKMDT 363
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177
Y + R F L+ ++ M +G P++ + ++ ++ +++A + +M+
Sbjct: 364 YVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMI 423
Query: 178 EKGFG 182
E+G
Sbjct: 424 ERGLS 428
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 20/225 (8%)
Query: 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVIS----------YTSIIGGLGLV 58
D S+ L+D C+ + V +A ++ +VI + I+ G +
Sbjct: 150 DETSFYNLVDALCEHKHVVEAEELC-------FGKNVIGNGFSVSNTKIHNLILRGWSKL 202
Query: 59 GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY 118
G K ++ K+M G D +Y+ + C + + A L EM + + + Y
Sbjct: 203 GWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAY 262
Query: 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178
N R S + ++ M GC PN + ++KL ++ A ++ ++M +
Sbjct: 263 NTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPK 322
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+G + LF L K E F MI G +P ++
Sbjct: 323 RGCQPDSITYMCLFSRL---EKPSEILSLFGRMIRSGVRPKMDTY 364
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 105/217 (48%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARD 66
+PD+ +YN LI+ +CK +++ A +++++MR +D SPD ++Y +IG L G+ D A
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126
VL ++ C P Y I + + +A LMDEM+ +GL P+ TYN R
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186
+ ++ + + GC P+ S L++ Q K E +L M + ++
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+L LC GK+ EA M EKG P S+
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 115/240 (47%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P++V+Y+ LI C+D ++E+A +++ M+++ ++PD SY +I G+ D A +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L+ M GC PD YN + C + A + ++ E G SPN+++YN F +
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
S D + ++ MM G P+ + ++ R+ V+ A +L DM F ++
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMA 247
+++ C ++ +A M+ G +P++ ++ + + A + L+N +
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 110/266 (41%), Gaps = 2/266 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR PD V+YN +I C +++ A K++ ++ ++ P VI+YT +I L G
Sbjct: 184 MRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGG 243
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A ++ EM G PD YN IR C + A ++ + KG P+ +YN+
Sbjct: 244 VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNI 303
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
R L +M C PN + L+ R K+E A+ L M EKG
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
D L C G+L A + MI G P V++ + A + K +
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL 423
Query: 241 NLSNKMALFGPSMIPKREEYLAEMSA 266
+ K+ G S P Y SA
Sbjct: 424 EIFGKLGEVGCS--PNSSSYNTMFSA 447
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+KPD+ +YN +I CK+ V++A+++V + + PDVISY ++ L G+
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++ ++ +M C P+ Y+ I C ++ +A L+ M EKGL+P+A +Y+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
F L + M+ GCLP+ L LCK K + AL+++ + E
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK-NGKADQALEIFGKLGEV 432
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
G + +F L G + A LEM+ G P ++++
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITY 476
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 1/226 (0%)
Query: 21 CKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA 80
C+ ++ ++E M + +PDVI T +I G + KA V++ ++++G PD
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158
Query: 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCR 140
AYNA I +C R+ DA+ ++D M K SP+ TYN+ L + + +
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218
Query: 141 MMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK 200
++ C P + L++ + V+ AL+L ++M+ +G + + + +C G
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278
Query: 201 LVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246
+ A + + KG +P +S+ + + K E + L KM
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G PDIV+YN ++ CK+ + ++A +I K+ + SP+ SY ++ L G +A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ EM G PD YN+ I C + +A L+ +M P+ TYN+
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLG 517
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177
F ++ + + N+ M+G GC PN + L++ A++L ND+V
Sbjct: 518 FCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
E+G P+ SYN + +A ++ +M I PD I+Y S+I L G D
Sbjct: 431 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVD 490
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
+A ++L +M+ +P YN + +C A R+ DA +++ MV G PN TTY +
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PD ++YN +I C++ V++A++++ MR + P V++Y ++ G +
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107
+ A +VL+ M GC P+ Y I A +A L +++V
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 121/218 (55%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+ P+++++N L+DV+ K+ ++++A ++ ++M ISP++I+Y +++ G + + +A
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125
++L M C PD + + I+ YC+ KR+ D + + ++GL NA TY++ + F
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413
Query: 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI 185
S ++ + L+ M+ G LP+ + L+ K+E AL+++ D+ + I
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473
Query: 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + + +C GK+ +A F + KG KP+ +++
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 114/223 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E VK D+ +Y+ +ID C+D ++ A + ++M + I V++Y S++ GL G+
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ +LK+M P+ +N + + +L++A+ L EM+ +G+SPN TYN
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ N L + N+ M+ C P+ + L+K ++V+ ++++ ++ ++G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + +L C GK+ AE+ F EM+ G P +++
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 441
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
++G +PD ++N LI + +V +A +V++M + PDV++Y SI+ G+ G
Sbjct: 151 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
A D+L++M+E D Y+ I + C + A L EM KG+ + TYN
Sbjct: 211 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG 182
R + L M+ +PN + L+ + ++ K++ A +L+ +M+ +G
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
I+ + L D C +L EA M+ P V+F +
Sbjct: 331 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 2/223 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ +I + N +I+ +C+ + AY ++ K+ PD ++ ++I GL L G+ +A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ M E GC PD YN+ + C + A L+ +M E+ + + TY+
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGS 183
+ ++ +L+ M G + + LV+ LCK + + AL L DMV +
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL-LLKDMVSREIVP 296
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ +VL D+ GKL EA + + EMI +G P+ +++ +
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTL 339
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 37/212 (17%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ P+I++YN L+D YC ++ +A +++ M SPD++++TS+I G +V + D
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF-- 122
V + + + G +A Y+ ++ +C + +++ A L EMV G+ P+ TY +
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447
Query: 123 --------RVFYWSNDLRSS-------------------------WNLYCRMMGTGCLPN 149
+ DL+ S WNL+C + G PN
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507
Query: 150 TQSCMFLVK-LCKRQEKVEIALQLWNDMVEKG 180
+ ++ LCK+ E + L M E G
Sbjct: 508 VMTYTVMISGLCKKGSLSEANI-LLRKMEEDG 538
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M GV PD+++Y L+D C + ++EKA +I E ++ + ++ YT+II G+ G+
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ A ++ + G P+ Y I C L +A+ L+ +M E G +PN TYN
Sbjct: 489 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT 548
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTG 145
R DL +S L M G
Sbjct: 549 LIRAHLRDGDLTASAKLIEEMKSCG 573
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 4/208 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ + V+Y+ L+ +C+ +++ A ++ ++M + PDV++Y ++ GL G+ +KA
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++ +++++ Y I C ++ DA L + KG+ PN TY +
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 517
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
L + L +M G PN + L++ R + + +L +M GF +
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
++ D+L E +KSFL+M+
Sbjct: 578 ASSIKMVIDMLLSG----ELDKSFLDML 601
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 3/233 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P +V ++ + +Q +++ I+ ++ + +I + A V
Sbjct: 86 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
L ++ + G PD +N I+ + ++ +A L+D MVE G P+ TYN
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
S D + +L +M + + ++ R ++ A+ L+ +M KG S ++
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ L LC GK + +M+ + P+ ++F L+++ K+ LQ
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF---NVLLDVFVKEGKLQ 315
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 85/204 (41%)
Query: 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82
D + + A + ++M P ++ ++ + Q + D K+++ G +
Sbjct: 66 DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125
Query: 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142
N I +C + A ++ ++++ G P+ TT+N + + + + L RM+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185
Query: 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202
GC P+ + +V R +AL L M E+ + + + D LC G +
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245
Query: 203 EAEKSFLEMIEKGHKPSQVSFRRI 226
A F EM KG K S V++ +
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSL 269
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G P+ +YN LI + +D + + K++E+M+ S D S +I L L G+
Sbjct: 534 MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML-LSGE 592
Query: 61 PDKA 64
DK+
Sbjct: 593 LDKS 596
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 35/226 (15%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G+KPD ++YNCLI +C+ ++E A K V KM+ + +SP V +Y +IGG G +
Sbjct: 415 MEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYE 474
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DK D+LKEM++ G P+ +Y I C +L +A + +M ++G+SP YN+
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
L+ C + K+E A + +M++KG
Sbjct: 535 -----------------------------------LIDGCCSKGKIEDAFRFSKEMLKKG 559
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L D L GKL EAE LE+ KG KP ++ +
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSL 605
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 125/264 (47%), Gaps = 10/264 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ + P + YN LID CK +++ A ++ ++M + P +I+Y ++I G G
Sbjct: 205 MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGN 264
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
P+K+ V + MK P +N ++ A + DA ++ EM + G P+A T+++
Sbjct: 265 PEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSI 324
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F + + ++ +Y + +G N +C L+ ++ K+E A ++ + KG
Sbjct: 325 LFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG 384
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF----RRIKALMELANKQ 236
++ + + D C G LV A M ++G KP +++ RR L E+ N +
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAE 444
Query: 237 EALQNLSNKMALFGPSMIPKREEY 260
+ + NKM L G S P E Y
Sbjct: 445 KEV----NKMKLKGVS--PSVETY 462
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 123/239 (51%), Gaps = 2/239 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GVK + + + L++ CK+ ++EKA +I+ + + + P+ + Y ++I G G A
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGA 408
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
R ++ M++ G PD AYN IR +C + +A +++M KG+SP+ TYN+
Sbjct: 409 RMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGS 183
+ + +++ M G +PN S L+ LCK + +E + + DM ++G
Sbjct: 469 YGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQI-VKRDMEDRGVSP 527
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL 242
+ + ++L D C GK+ +A + EM++KG + + V++ + + + K ++L
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDL 586
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 41/254 (16%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P +++YN LID YCK EK++K+ E+M+ + I P +I++ +++ GL G + A +V
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENV 306
Query: 68 LKEMKEYGCYPDAAAYNAAIRNY-----------------------------------CI 92
LKEMK+ G PDA ++ Y C
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366
Query: 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152
++ A ++ + KGL PN YN + DL + M G P+ +
Sbjct: 367 EGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLA 426
Query: 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSF---L 209
L++ ++E A + N M KG + ++ L+ G+ E +K F
Sbjct: 427 YNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI---LIGGYGRKYEFDKCFDILK 483
Query: 210 EMIEKGHKPSQVSF 223
EM + G P+ VS+
Sbjct: 484 EMEDNGTMPNVVSY 497
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 98/218 (44%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+++G PD +++ L D Y + + E A + E D + + + + ++ L G+
Sbjct: 310 MKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGK 369
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA ++L G P+ YN I YC L A ++ M ++G+ P+ YN
Sbjct: 370 IEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNC 429
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
R F ++ ++ +M G P+ ++ L+ R+ + + + +M + G
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218
++ L + LC KL+EA+ +M ++G P
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSP 527
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
E +P Y I K V K ++ +M+ + I P V Y +I GL + +
Sbjct: 172 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMN 231
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
A + EM P YN I YC A + + + M + P+ T+N
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLL 291
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG 182
+ + + + + N+ M G +P+ + L EK E AL ++ V+ G
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVK 351
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+L + LC GK+ +AE+ + KG P++V +
Sbjct: 352 MNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIY 392
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
EM +KPD++ YN ++ Y +EKA+ + ++M ++ I D +Y S+I G VG+
Sbjct: 658 EMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLC 717
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGL 111
+ R ++ EM P+A YN ++ +C K A EM EKG
Sbjct: 718 EVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGF 766
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G+KP + +Y+ LI + C +E ++ +M + PD++ Y ++ + G
Sbjct: 625 MKRSGIKPTLKTYHLLISL-CTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHGD 680
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+KA ++ K+M E D YN+ I +L + L+DEM + + P A TYN+
Sbjct: 681 MEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNI 740
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLW 173
+ D S++ Y M G FL+ +C E V + W
Sbjct: 741 IVKGHCEVKDYMSAYVWYREMQEKG---------FLLDVCIGNELVSGLKEEW 784
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 62/134 (46%)
Query: 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152
+K + +A+ L + +G+ P++ + L + R + N++ ++ + P+
Sbjct: 122 SKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFM 181
Query: 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212
++ + V L+L+N M + + +VL D LC ++ +AE+ F EM+
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241
Query: 213 EKGHKPSQVSFRRI 226
+ PS +++ +
Sbjct: 242 ARRLLPSLITYNTL 255
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 121/249 (48%), Gaps = 6/249 (2%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
++E GV PDIV+YN LI Y +E+A++++ M + SP V +Y ++I GL G+
Sbjct: 261 VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A++V EM G PD+ Y + + C + + + +M + + P+ ++
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+F S +L + + + G +P+ L++ R+ + +A+ L N+M+++G
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
++ + + LC L EA+K F EM E+ P + L L + L
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYT------LTILIDGHCKLG 494
Query: 241 NLSNKMALF 249
NL N M LF
Sbjct: 495 NLQNAMELF 503
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGL---GL 57
++E G+ PD V Y LI YC+ + A + +M + + DV++Y +I+ GL +
Sbjct: 401 VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 460
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
+G+ DK + EM E +PD+ I +C L++A L +M EK + + T
Sbjct: 461 LGEADK---LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVT 517
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDM 176
YN F D+ ++ ++ M+ LP S LV LC + E A ++W++M
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAE-AFRVWDEM 576
Query: 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE-MIEKGHKPSQVSFRRI 226
+ K +++ + + C G + E SFLE MI +G P +S+ +
Sbjct: 577 ISKNIKPTVMICNSMIKGYCRSGNASDGE-SFLEKMISEGFVPDCISYNTL 626
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 9/246 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + PD + LID +CK ++ A ++ +KM+++ I DV++Y +++ G G VG
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A+++ +M P +Y+ + C L +A + DEM+ K + P N
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + S + + +M+ G +P+ S L+ R+E + A L M E+
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 181 FGSYILVSDV-----LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELAN 234
G LV DV + C ++ EAE +MIE+G P + ++ I + N
Sbjct: 651 GG---LVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDN 707
Query: 235 KQEALQ 240
EA +
Sbjct: 708 LTEAFR 713
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 35/254 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PD +Y L+ CK V + K+ MR D+ PD++ ++S++ G
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN 390
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
DKA +KE G PD Y I+ YC + A L +EM+++G + + TYN
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNT 450
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV----KLCKRQEKVEI-------- 168
L + L+ M P++ + L+ KL Q +E+
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 169 -----------------------ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205
A ++W DMV K + +L + LC G L EA
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 206 KSFLEMIEKGHKPS 219
+ + EMI K KP+
Sbjct: 571 RVWDEMISKNIKPT 584
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65
+KP ++ N +I YC+ +EKM E PD ISY ++I G KA
Sbjct: 581 IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAF 640
Query: 66 DVLKEMKEY--GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
++K+M+E G PD YN+ + +C ++++A ++ +M+E+G++P+ +TY
Sbjct: 641 GLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPN 149
F ++L ++ ++ M+ G P+
Sbjct: 701 GFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDED--ISPDVISYTSIIGGLGLVGQPD 62
G PD +SYN LI + ++ + KA+ +V+KM +E + PDV +Y SI+ G Q
Sbjct: 615 GFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN 114
+A VL++M E G PD + Y I + L +A + DEM+++G SP+
Sbjct: 675 EAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 2/224 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
+R G I + N LI + VE A+ + +++ + +V + ++ L G+
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+K L +++E G YPD YN I Y + +A LM+ M KG SP TYN
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCM-FLVKLCKRQEKVEIALQLWNDMVEK 179
+ ++ M+ +G P++ + L++ CK+ + VE ++++DM +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE-KVFSDMRSR 369
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
++ + L G L +A F + E G P V +
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 2/218 (0%)
Query: 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMK 72
++ LI Y + R++ +A++ +R + + + + ++IG L +G + A V +E+
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEIS 227
Query: 73 EYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR 132
G + N + C ++ + ++ EKG+ P+ TYN + +
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLME 287
Query: 133 SSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVL 191
++ L M G G P + ++ LCK K E A +++ +M+ G L
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCK-HGKYERAKEVFAEMLRSGLSPDSTTYRSL 346
Query: 192 FDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKAL 229
C G +VE EK F +M + P V F + +L
Sbjct: 347 LMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 37/201 (18%)
Query: 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSW 135
C + + ++ IR Y A++LR+A + KG + + N + +W
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220
Query: 136 NLYCRMMGTGCLPNTQSCMFLVK-LCK--RQEKV-------------------------- 166
+Y + +G N + +V LCK + EKV
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280
Query: 167 ------EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220
E A +L N M KGF + + + + LC GK A++ F EM+ G P
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDS 340
Query: 221 VSFRRIKALMELANKQEALQN 241
++R + LME K + ++
Sbjct: 341 TTYRSL--LMEACKKGDVVET 359
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + GV P++ YNCLI +CK + +A ++ +M ++SPDV +YT +I GL + Q
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQ 389
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A + ++MK +P +A YN+ I YC + A L EM G+ PN T++
Sbjct: 390 VAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFST 449
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ D++++ LY M G +P+ + L+ ++ ++ AL+L++DM+E G
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAG 509
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 1/247 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M++ GV P++ +Y+ +ID YCK V +AY + +++ ++ P+V+ + +++ G +
Sbjct: 260 MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARE 319
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
AR + M ++G P+ YN I +C + + +A GL+ EM LSP+ TY +
Sbjct: 320 LVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTI 379
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + + L+ +M P++ + L+ ++ +E AL L ++M G
Sbjct: 380 LINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASG 439
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
I+ L D C++ + A + EM KG P V++ I A + AN +EAL
Sbjct: 440 VEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEAL 499
Query: 240 QNLSNKM 246
+ S+ +
Sbjct: 500 RLYSDML 506
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + + PD+ +Y LI+ C + QV +A ++ +KM++E I P +Y S+I G
Sbjct: 365 MESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYN 424
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A D+ EM G P+ ++ I YC + ++ A GL EM KG+ P+ TY
Sbjct: 425 MEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ +++ + LY M+ G PN + LV ++ ++ +A+ + + ++
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQR 544
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ L + LC G ++ A + F +M G P S+
Sbjct: 545 SCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSY 587
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 8/259 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PD+ Y L K K K++++M I P+V YT I L +
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A + + MK++G P+ Y+A I YC +R A GL E++ L PN +
Sbjct: 250 MEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGT 309
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPN--TQSCMFLVKLCKRQEKVEIALQLWNDMVE 178
F + +L ++ +L+ M+ G PN +C+ + CK +E A+ L ++M
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCL-IHGHCKSGNMLE-AVGLLSEMES 367
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQE 237
+ +L + LC ++ EA + F +M + PS ++ I + N ++
Sbjct: 368 LNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQ 427
Query: 238 ALQNLSNKMALFG--PSMI 254
AL +L ++M G P++I
Sbjct: 428 AL-DLCSEMTASGVEPNII 445
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 2/211 (0%)
Query: 2 REMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP 61
REM PD + +++ + R+ + + + M + PDV Y + G
Sbjct: 156 REMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLY 215
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
K +L EM G P+ Y I + C ++ +A + + M + G+ PN TY+
Sbjct: 216 SKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEKG 180
+ + ++R ++ LY ++ LPN LV CK +E V A L+ MV+ G
Sbjct: 276 IDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVT-ARSLFVHMVKFG 334
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211
+ V + L C G ++EA EM
Sbjct: 335 VDPNLYVYNCLIHGHCKSGNMLEAVGLLSEM 365
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 73/170 (42%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ PD+V+Y LID + K+ +++A ++ M + I P+ ++ ++ G G+ A
Sbjct: 474 GIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVA 533
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D +E + + + I C + AS +M G++P+ +Y +
Sbjct: 534 IDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKG 593
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWN 174
+ + L C M+ TG LPN L + + V+ A L N
Sbjct: 594 HLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKSACFLTN 643
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G+ P+ ++ CL+D + K+ ++ A ++ + + + +T +I GL G
Sbjct: 505 MLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGY 564
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A +M+ G PD +Y + ++ + KR+ D L +M++ G+ PN L
Sbjct: 565 ILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQL 624
Query: 121 FFRVFYWSN 129
R FY +N
Sbjct: 625 LAR-FYQAN 632
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 133 SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLF 192
S W Y M+ G +P+ L + C +Q +L ++M G + + +
Sbjct: 182 SVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYI 241
Query: 193 DLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
LC K+ EAEK F M + G P+ ++
Sbjct: 242 LDLCRDNKMEEAEKMFELMKKHGVLPNLYTY 272
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 1/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G PDI ++N LI Y ++E A +I++ M D + PDV +Y S++ GL +
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ + K M E GC P+ +N + + C ++L +A GL++EM K ++P+A T+
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571
Query: 121 FFRVFYWSNDLRSSWNLYCRM-MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
F + DL ++ L+ +M +T + ++ + V +A +L+ +MV++
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G ++ D C G + K LEM+E G PS + R+
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRV 678
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 99/219 (45%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G PD +Y LID C + + +A + + + I P+VI Y ++I GL G +A
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+ EM E G P+ +N + C + DA GL+ M+ KG P+ T+N+
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + ++ + M+ G P+ + L+ + K E ++ + MVEKG
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ ++L + LC KL EA EM K P V+F
Sbjct: 531 LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTF 569
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GV P++ +YN I C+ +++ A ++V + ++ PDVI+Y ++I GL + +A
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
L +M G PD+ YN I YC ++ A ++ + V G P+ TY
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDG 365
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + L+ +G G PN L+K Q + A QL N+M EKG
Sbjct: 366 LCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPE 425
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ ++L + LC MG + +A+ MI KG+ P +F
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF 464
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 2/223 (0%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARD 66
+P + SYN ++ V ++A+K+ +MRD I+PDV S+T + +P A
Sbjct: 108 EPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALR 167
Query: 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126
+L M GC + AY + + + L +M+ G+S +T+N RV
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC 227
Query: 127 WSNDLRSSWNLYCRMMGTGCLPNTQSC-MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI 185
D++ L +++ G LPN + +F+ LC+R E ++ A+++ ++E+G +
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE-LDGAVRMVGCLIEQGPKPDV 286
Query: 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228
+ + L LC K EAE +M+ +G +P ++ + A
Sbjct: 287 ITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIA 329
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 35/256 (13%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGL---GLV- 58
E G KPD+++YN LI CK+ + ++A + KM +E + PD +Y ++I G G+V
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338
Query: 59 -------------------------------GQPDKARDVLKEMKEYGCYPDAAAYNAAI 87
G+ ++A + E G P+ YN I
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Query: 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL 147
+ + +A+ L +EM EKGL P T+N+ + + L M+ G
Sbjct: 399 KGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYF 458
Query: 148 PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKS 207
P+ + L+ Q K+E AL++ + M++ G + + L + LC K + ++
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518
Query: 208 FLEMIEKGHKPSQVSF 223
+ M+EKG P+ +F
Sbjct: 519 YKTMVEKGCAPNLFTF 534
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 1/215 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+KP+++ YN LI + +A ++ +M ++ + P+V ++ ++ GL +G A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++K M G +PD +N I Y ++ +A ++D M++ G+ P+ TYN
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
++ Y M+ GC PN + L++ R K++ AL L +M K
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219
+ L D C G L A F +M E+ +K S
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKM-EEAYKVS 599
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 8/212 (3%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G P++ ++N L++ C+ R++++A ++E+M+++ ++PD +++ ++I G G
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581
Query: 61 PDKARDVLKEMKE-YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
D A + ++M+E Y YN I + + A L EMV++ L P+ TY
Sbjct: 582 LDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYR 641
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
L F + ++ + MM G +P+ + ++ +++V A + + MV+K
Sbjct: 642 LMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701
Query: 180 GFGSYILVSDVLFDLLCDMGKL-VEAEKSFLE 210
G LV + + + +CD+ K V A K LE
Sbjct: 702 G-----LVPEAV-NTICDVDKKEVAAPKLVLE 727
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 107/223 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M GV + ++N L+ V CK V++ K+++K+ + P++ +Y I GL G+
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A ++ + E G PD YN I C + ++A + +MV +GL P++ TYN
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ ++ + + + G +P+ + L+ + + AL L+N+ + KG
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKG 386
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+++ + L L + G ++EA + EM EKG P +F
Sbjct: 387 IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 7/223 (3%)
Query: 20 YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD 79
Y + +V++A + E+M D P V SY +I+ L G D+A V M++ G PD
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYC 139
++ ++++C R A L++ M +G N Y FY N + L+
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 140 RMMGTG---CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC 196
+M+ +G CL L LCK+ + E +L + ++++G + ++ LC
Sbjct: 206 KMLASGVSLCLSTFNK--LLRVLCKKGDVKECE-KLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 197 DMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEA 238
G+L A + +IE+G KP +++ I L + + QEA
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 104/227 (45%), Gaps = 2/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR+ G+ PD+ S+ + +CK + A +++ M + +V++Y +++GG
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ ++ +M G + +N +R C +++ L+D+++++G+ PN TYNL
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEK 179
F + +L + + ++ G P+ + L+ LCK + E + L MV +
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL-GKMVNE 315
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G + L C G + AE+ + + G P Q ++R +
Sbjct: 316 GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 28 KAYKIVEKMRDE-DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE-YGCYPDAAAYNA 85
KA ++ MR E + +Y S+I LG G+ + +VL +M+E G + Y
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81
Query: 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
A++NY ++++A + + M P +YN V S + +Y RM G
Sbjct: 82 AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
P+ S +K + + AL+L N+M +G
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG 176
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%)
Query: 2 REMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP 61
R+ G K D +Y ++ + +Q + K++++M + P+ ++Y +I G
Sbjct: 351 RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYL 410
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
+A +V +M+E GC PD Y I + A L A + M E GLSP+ TY++
Sbjct: 411 KEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVI 470
Query: 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181
+ L ++ L+C M+G GC PN + ++ L + E AL+L+ DM GF
Sbjct: 471 INCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGF 530
Query: 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220
+ ++ ++L G L EAE F EM K P +
Sbjct: 531 QPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDE 569
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+E G +PD V+Y LID++ K ++ A + ++M++ +SPD +Y+ II LG G
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGH 479
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
A + EM GC P+ +N I + A+ A L +M G P+ TY++
Sbjct: 480 LPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSI 539
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
V L + ++ M +P+ LV L + V+ A Q + M++ G
Sbjct: 540 VMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAG 599
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219
+ + L + ++ EA M+ G PS
Sbjct: 600 LRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPS 638
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 2/251 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G KP+ V+YN LI Y + +++A + +M++ PD ++Y ++I G D A
Sbjct: 389 GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA 448
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
D+ + M+E G PD Y+ I A L A L EMV +G +PN T+N+ +
Sbjct: 449 MDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIAL 508
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + ++ LY M G P+ + ++++ +E A ++ +M K +
Sbjct: 509 HAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPD 568
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSN 244
V +L DL G + +A + + M++ G +P+ + + + ++ NL
Sbjct: 569 EPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQ 628
Query: 245 KMALFG--PSM 253
M G PS+
Sbjct: 629 SMLALGLHPSL 639
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 16/208 (7%)
Query: 63 KARDVLKEMKEY--------------GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVE 108
+A VLK+M Y G D Y + N AK+ + + L+DEMV
Sbjct: 328 QANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVR 387
Query: 109 KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168
G PN TYN + +N L+ + N++ +M GC P+ + L+ + + ++I
Sbjct: 388 DGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDI 447
Query: 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228
A+ ++ M E G V+ + L G L A + F EM+ +G P+ V+F + A
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 507
Query: 229 LMELANKQEALQNLSNKM--ALFGPSMI 254
L A E L M A F P +
Sbjct: 508 LHAKARNYETALKLYRDMQNAGFQPDKV 535
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G P++V++N +I ++ K R E A K+ M++ PD ++Y+ ++ LG G
Sbjct: 490 MVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGF 549
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A V EM+ PD Y + + A + A M++ GL PN T N
Sbjct: 550 LEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNS 609
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160
F + + ++NL M+ G P+ Q+ L+ C
Sbjct: 610 LLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCC 649
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 3/226 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR G +PD +YN LID C ++++A ++++M + VI+Y ++I G +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A ++ EM+ +G ++ YN I C ++R+ DA+ LMD+M+ +G P+ TYN
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
F D++ + ++ M GC P+ + L+ LCK +VE+A +L + K
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK-AGRVEVASKLLRSIQMK 604
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ-VSFR 224
G + + L K EA F EM+E+ P VS+R
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G PD ++N L++ CK V+ A +I++ M E PDV +Y S+I GL +G+ +A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
+VL +M C P+ YN I C ++ +A+ L + KG+ P+ T+N +
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ + R + L+ M GC P+ + L+ + K++ AL + M G
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
++ + L D C K EAE+ F EM G + V++ +
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 113/226 (50%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G PD+ +YN +I CK +V++A +++++M D SP+ ++Y ++I L Q
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A ++ + + G PD +N+ I+ C+ + R A L +EM KG P+ TYN+
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
L + N+ +M +GC + + L+ + K A +++++M G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + L D LC ++ +A + +MI +G KP + ++ +
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 3/254 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDED-ISPDVISYTSIIGGLGLVG 59
M E G VS N ++ +CK+ +VE A +++M ++D PD ++ +++ GL G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 60 QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
A +++ M + G PD YN+ I C +++A ++D+M+ + SPN TYN
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVE 178
N + + L + G LP+ + L++ LC + +A++L+ +M
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH-RVAMELFEEMRS 428
Query: 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238
KG ++L D LC GKL EA +M G S +++ + ANK
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 239 LQNLSNKMALFGPS 252
+ + ++M + G S
Sbjct: 489 AEEIFDEMEVHGVS 502
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+ PD+ ++N LI C R A ++ E+MR + PD +Y +I L G+ D+A
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++LK+M+ GC YN I +C A + R+A + DEM G+S N+ TYN
Sbjct: 455 LNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDG 514
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
S + + L +M+ G P+ + L+ R ++ A + M G
Sbjct: 515 LCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215
I+ L LC G++ A K + KG
Sbjct: 575 IVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 38/283 (13%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G+KPD+ ++N LI C+ Q+ A ++E M + PD ++T+++ G G D A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 65 RDVLKEMKEYGC------------------------------------YPDAAAYNAAIR 88
+ ++M E+GC +PD +N +
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP 148
C A ++ A +MD M+++G P+ TYN +++ + + +M+ C P
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363
Query: 149 NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSF 208
NT + L+ ++ +VE A +L + KG + + L LC A + F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 209 LEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSNKMALFG 250
EM KG +P + ++ I +L EAL N+ +M L G
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL-NMLKQMELSG 465
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 40 DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDA 99
+ SP+ Y I+ LG G D + +L++MK C + + I +Y + +
Sbjct: 78 NFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEI 137
Query: 100 SGLMDEMVEK-GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158
++D M+++ GL P+ YN + N L+ + +M G P+ + L+K
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSD 189
R ++ A+ + DM SY LV D
Sbjct: 198 ALCRAHQLRPAILMLEDM-----PSYGLVPD 223
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 37/119 (31%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIV--------------------------- 33
M G +PDIV+Y LI CK +VE A K++
Sbjct: 566 MTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRK 625
Query: 34 ---------EKMRDEDISPDVISYTSIIGGLGLVGQPDK-ARDVLKEMKEYGCYPDAAA 82
E + + PD +SY + GL G P + A D L E+ E G P+ ++
Sbjct: 626 TTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSS 684
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 3/232 (1%)
Query: 1 MREMGVK---PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57
+++MGV + SYN +ID CK R++E A + +M+D ISP+++++ + + G +
Sbjct: 413 LKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSV 472
Query: 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT 117
G K VL+++ +G PD ++ I C AK ++DA EM+E G+ PN T
Sbjct: 473 RGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEIT 532
Query: 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177
YN+ R + D S L+ +M G P+ + ++ + KV+ A +L M+
Sbjct: 533 YNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTML 592
Query: 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKAL 229
G L L + G+ EA + F + G P + R ++ L
Sbjct: 593 RIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEEL 644
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 111/241 (46%), Gaps = 1/241 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
GVKP Y L+ ++ + + +++M + + V SY ++I L + + A
Sbjct: 385 GVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENA 444
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
L EM++ G P+ +N + Y + ++ G++++++ G P+ T++L
Sbjct: 445 AMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINC 504
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184
+ +++ +++ + M+ G PN + L++ C + +++L+ M E G
Sbjct: 505 LCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPD 564
Query: 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLS 243
+ + C M K+ +AE+ M+ G KP ++ IKAL E + EA + S
Sbjct: 565 LYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFS 624
Query: 244 N 244
+
Sbjct: 625 S 625
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 35/258 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR G KPD +YN LI CK V++A ++V++M E P+V +YT +I G + G+
Sbjct: 206 MRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGR 265
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRN------------------------------- 89
D+A L+ M+ P+ A +
Sbjct: 266 VDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDA 325
Query: 90 --YCIAKR--LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
YC++ ++ + ++ E+G P+++T+N +DL + ++ + G
Sbjct: 326 VLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRG 385
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205
P + LV+ ++ + M G S + + + D LC ++ A
Sbjct: 386 VKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAA 445
Query: 206 KSFLEMIEKGHKPSQVSF 223
EM ++G P+ V+F
Sbjct: 446 MFLTEMQDRGISPNLVTF 463
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
+G+KP YN +ID K ++ AY ++MR + PD +Y +I G+ G D+
Sbjct: 174 LGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDE 233
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121
A ++K+M++ G P+ Y I + IA R+ +A ++ M + L+PN T F
Sbjct: 234 AIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTF 291
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 41 ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDAS 100
+ P Y ++I L D A ++M+ GC PD YN I C + +A
Sbjct: 176 MKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAI 235
Query: 101 GLMDEMVEKGLSPNATTYNLFFRVF 125
L+ +M ++G PN TY + F
Sbjct: 236 RLVKQMEQEGNRPNVFTYTILIDGF 260
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 110 GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169
G+ P+ YN SN L ++ + +M GC P+ + L+ ++ V+ A
Sbjct: 175 GMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEA 234
Query: 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224
++L M ++G + +L D G++ EA K M + P++ + R
Sbjct: 235 IRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIR 289
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 39/107 (36%)
Query: 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKG 110
+IG G +G DV ++ G P YNA I + L A +M G
Sbjct: 151 LIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG 210
Query: 111 LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157
P+ TYN+ + + L +M G PN + L+
Sbjct: 211 CKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILI 257
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 115/247 (46%)
Query: 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDK 63
M + P+ +S+N +I CK R V++A ++ M + PD +Y +++ GL + D+
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240
Query: 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
A +L EM+ GC P YN I C L + L+D M KG PN TYN
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300
Query: 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183
L + +L RM+ + C+PN + L+ +Q + A++L + M E+G+
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLS 243
+ VL L GK EA + +M EKG KP+ V + + + K + +
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420
Query: 244 NKMALFG 250
N+M G
Sbjct: 421 NRMIASG 427
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 117/276 (42%), Gaps = 36/276 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G P V YN LID CK + + K+V+ M + P+ ++Y ++I GL L G+
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDA--------------------- 99
DKA +L+ M C P+ Y I +R DA
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 100 --SGLMDE------------MVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
SGL E M EKG PN Y++ + + RM+ +G
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205
CLPN + L+K + E A+Q+W +M + G VL D LC +G++ EA
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAM 487
Query: 206 KSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQ 240
+ +M+ G KP V++ IK L + + AL+
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALK 523
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 1/241 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E PD +Y L+D CK+ ++++A ++++M+ E SP + Y +I GL G
Sbjct: 213 MPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+ ++ M GC P+ YN I C+ +L A L++ MV PN TY
Sbjct: 273 LTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ L M G N L+ ++ K E A+ LW M EKG
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEAL 239
I+V VL D LC GK EA++ MI G P+ ++ + K + +EA+
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452
Query: 240 Q 240
Q
Sbjct: 453 Q 453
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G KP+IV Y+ L+D C++ + +A +I+ +M P+ +Y+S++ G G
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
++A V KEM + GC + Y+ I C R+++A + +M+ G+ P+ Y+
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS 507
Query: 121 FFRVFYWSNDLRSSWNLYCRMM---GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177
+ + ++ LY M+ P+ + L+ Q+ + A+ L N M+
Sbjct: 508 IIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSML 567
Query: 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210
++G ++ + + L + + +SFLE
Sbjct: 568 DRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLE 600
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
P+ V+Y LI+ K R+ A +++ M + + Y+ +I GL G+ ++A +
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
++M E GC P+ Y+ + C + +A +++ M+ G PNA TY+ + F+
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFK 444
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
+ + ++ M TGC N L+ +V+ A+ +W+ M+ G +
Sbjct: 445 TGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVA 504
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMI---EKGHKPSQVSF 223
+ LC +G + A K + EM+ E +P V++
Sbjct: 505 YSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTY 543
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 109/225 (48%), Gaps = 3/225 (1%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E G + Y+ LI K+ + E+A + KM ++ P+++ Y+ ++ GL G+
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
P++A+++L M GC P+A Y++ ++ + +A + EM + G S N Y++
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV 472
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV--- 177
++ + ++ +M+ G P+T + ++K ++ AL+L+++M+
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE 532
Query: 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
E ++ ++L D LC + A M+++G P ++
Sbjct: 533 EPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVIT 577
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP-DKAR 65
+PD+V+YN L+D C + + +A ++ M D PDVI+ + + L DK R
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGR 596
Query: 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123
L+E+ + +R+ A +++ M+ K L+P +T+ + R
Sbjct: 597 SFLEEL---------------VVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVR 639
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR + PD+ SYN +I +C+ +++EKA ++ +M+ S ++++ +I G+
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A LKEMK G D Y + IR +C L L DE++E+G SP A TYN
Sbjct: 228 MDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
R F L+ + ++ M+ G PN + L+ K + ALQL N M+EK
Sbjct: 288 LIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKD 347
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ +++ + LC G + +A + M ++ +P +++
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 37/260 (14%)
Query: 1 MREMGVKPDI-----------------------------------VSYNCLIDVYCKDRQ 25
M E GV+P++ V+YN +I+ CKD
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGL 367
Query: 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAY 83
V A +IVE M+ PD I+Y ++GGL G D+A +L M + Y PD +Y
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISY 427
Query: 84 NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143
NA I C RL A + D +VEK + + T N+ + D+ + L+ ++
Sbjct: 428 NALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISD 487
Query: 144 TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203
+ + N+ + ++ + + +A L M + + L LC G L +
Sbjct: 488 SKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547
Query: 204 AEKSFLEMIEKGHKPSQVSF 223
A + F EM + P VSF
Sbjct: 548 AWRLFEEMQRDNNFPDVVSF 567
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 3/192 (1%)
Query: 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPD 62
E G P ++YN LI +CK Q+++A +I E M + + P+V +YT +I GL VG+
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTK 334
Query: 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122
+A +L M E P+A YN I C + DA +++ M ++ P+ TYN+
Sbjct: 335 EALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCL--PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK- 179
DL + L M+ P+ S L+ ++ ++ AL +++ +VEK
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKL 454
Query: 180 GFGSYILVSDVL 191
G G + + +L
Sbjct: 455 GAGDRVTTNILL 466
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 11/261 (4%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M E + VS + L++ Y + R+ A+ ++ M + +V ++ ++ GL +
Sbjct: 98 MLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLE 157
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
KA +L+EM+ PD +YN IR +C K L A L +EM G S + T+ +
Sbjct: 158 CGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGI 217
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
F + + + M G + L++ C E ++ L+++++E+
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGE-LDRGKALFDEVLER 276
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEA 238
G + + L C +G+L EA + F MIE+G +P+ ++ I L + +EA
Sbjct: 277 GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Query: 239 LQNLSNKMALFGPSMIPKREE 259
LQ L+ MI K EE
Sbjct: 337 LQLLN--------LMIEKDEE 349
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%)
Query: 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEM 71
+Y +ID +CK + A ++ KMR ++ P V Y ++ L G D+A + +EM
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555
Query: 72 KEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131
+ +PD ++N I A ++ A L+ M GLSP+ TY+ F L
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
+ + + +M+ +G P+ C ++K C Q + + +L +V+K
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDK 663
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MR ++P + YNCL+ CK+ +++A+++ E+M+ ++ PDV+S+ +I G G
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA 115
A +L M G PD Y+ I + L +A D+MV+ G P+A
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
PD++SYN LI CK+ ++ +A I + + ++ + D ++ ++ G +KA ++
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127
K++ + ++ Y A I +C L A GL+ +M L P+ YN
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV 187
L +W L+ M P+ S ++ + ++ A L M G +
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601
Query: 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218
L + +G L EA F +M++ G +P
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEP 632
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 1/226 (0%)
Query: 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73
N L+ + R E A+ KM + D + +S + ++ + + A VL M +
Sbjct: 76 NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135
Query: 74 YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS 133
G + +N ++ C A L+ EM L P+ +YN R F +L
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195
Query: 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD 193
+ L M G+GC + + L+ + K++ A+ +M G + ++V L
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255
Query: 194 LLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEA 238
CD G+L + F E++E+G P +++ I+ +L +EA
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEA 301
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV 67
PD+VS+N +ID K ++ A ++ M +SPD+ +Y+ +I +G D+A
Sbjct: 562 PDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISF 621
Query: 68 LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDA-SGLMDEMVEKGL 111
+M + G PDA ++ ++ YCI++ D + L+ ++V+K +
Sbjct: 622 FDKMVDSGFEPDAHICDSVLK-YCISQGETDKLTELVKKLVDKDI 665
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M G+ PD+ +Y+ LI+ + K +++A +KM D PD S++ G+
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGE 649
Query: 61 PDKARDVLKEM 71
DK +++K++
Sbjct: 650 TDKLTELVKKL 660
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 108/226 (47%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +GVKP +Y ID Y K A + EKM+ + I+P++++ + + L G+
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
+A+ + +K+ G PD+ YN ++ Y + +A L+ EM+E G P+ N
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
Y ++ + +W ++ RM P + L+ + K++ A++L+ MV+KG
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
+ + LFD LC ++ A K +M++ G P ++ I
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTI 649
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGL----- 55
M + G PD+V++ L+D CK +A+ ++ MRD+ I P++ +Y ++I GL
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR 413
Query: 56 ------------------------------GLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85
G G A + ++MK G P+ A NA
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473
Query: 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145
++ + A R R+A + + + GL P++ TYN+ + + ++ + L MM G
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533
Query: 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205
C P+ L+ + ++V+ A +++ M E ++ + L L GK+ EA
Sbjct: 534 CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAI 593
Query: 206 KSFLEMIEKGHKPSQVSFRRI 226
+ F M++KG P+ ++F +
Sbjct: 594 ELFEGMVQKGCPPNTITFNTL 614
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 1/246 (0%)
Query: 2 REMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP 61
+++GV+P + +YN LI + +E A + +++ PDV +Y ++ G G+
Sbjct: 777 KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836
Query: 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLM-DEMVEKGLSPNATTYNL 120
D+ ++ KEM + C + +N I A + DA L D M ++ SP A TY
Sbjct: 837 DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 896
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
S L + L+ M+ GC PN L+ + + + A L+ MV++G
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240
+ VL D LC +G++ E F E+ E G P V + I + +++ E
Sbjct: 957 VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016
Query: 241 NLSNKM 246
L N+M
Sbjct: 1017 VLFNEM 1022
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 103/222 (46%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M +G+KP++ ++ I V + ++ +AY+I+++M DE PDV++YT +I L +
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARK 308
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A++V ++MK PD Y + + + L EM + G P+ T+ +
Sbjct: 309 LDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTI 368
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ + +++ M G LPN + L+ R +++ AL+L+ +M G
Sbjct: 369 LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222
V D G V A ++F +M KG P+ V+
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 1/247 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + G PD+V+Y LID C R+++ A ++ EKM+ PD ++Y +++
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D + EM++ G PD + + C A +A +D M ++G+ PN TYN
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ L + L+ M G P + + + + AL+ + M KG
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEAL 239
I+ + L G+ EA++ F + + G P V++ +K ++ EA+
Sbjct: 464 IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAI 523
Query: 240 QNLSNKM 246
+ LS M
Sbjct: 524 KLLSEMM 530
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 116/252 (46%), Gaps = 2/252 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
++ G PD+ +YN L+D Y K ++++ +++ ++M + + I++ +I GL G
Sbjct: 811 VKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGN 870
Query: 61 PDKARDVLKE-MKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119
D A D+ + M + P A Y I + RL +A L + M++ G PN YN
Sbjct: 871 VDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYN 930
Query: 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
+ F + + ++ L+ RM+ G P+ ++ LV +V+ L + ++ E
Sbjct: 931 ILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM-IEKGHKPSQVSFRRIKALMELANKQEA 238
G ++ +++ + L +L EA F EM +G P ++ + + +A E
Sbjct: 991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 239 LQNLSNKMALFG 250
+ N++ G
Sbjct: 1051 AGKIYNEIQRAG 1062
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 1/249 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
MRE G + SYN LI + K R +A ++ +M E P + +Y+S++ GLG
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D +LKEM+ G P+ + IR A ++ +A ++ M ++G P+ TY +
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTV 298
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
+ L + ++ +M P+ + + L+ ++ Q W++M + G
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEAL 239
++ +L D LC G EA + M ++G P+ ++ I L+ + +AL
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 240 QNLSNKMAL 248
+ N +L
Sbjct: 419 ELFGNMESL 427
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 98/191 (51%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
++++G+ PD V+YN ++ Y K ++++A K++ +M + PDVI S+I L +
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADR 553
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A + MKE P YN + ++++A L + MV+KG PN T+N
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT 613
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180
F ++++ + + +MM GC+P+ + ++ + +V+ A+ ++ M +
Sbjct: 614 LFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLV 673
Query: 181 FGSYILVSDVL 191
+ ++ + +L
Sbjct: 674 YPDFVTLCTLL 684
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 2/212 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M+ G+ P+IV+ N + K + +A +I ++D + PD ++Y ++ VG+
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D+A +L EM E GC PD N+ I A R+ +A + M E L P TYN
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNT 578
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK-LCKRQEKVEIALQLWNDMVEK 179
+ ++ + L+ M+ GC PNT + L LCK E V +AL++ M++
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDE-VTLALKMLFKMMDM 637
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211
G + + + L G++ EA F +M
Sbjct: 638 GCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 2/220 (0%)
Query: 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKA 64
G +P + +Y+ L+ K R ++ ++++M + P+V ++T I LG G+ ++A
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 277
Query: 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124
++LK M + GC PD Y I C A++L A + ++M P+ TY
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337
Query: 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMVEKGFGS 183
F + DL S + M G +P+ + LV LCK E A + M ++G
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE-AFDTLDVMRDQGILP 396
Query: 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
+ + L L + +L +A + F M G KP+ ++
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 1/227 (0%)
Query: 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ 60
M + P +Y LID K ++ +A ++ E M D P+ Y +I G G G+
Sbjct: 882 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120
D A + K M + G PD Y+ + C+ R+ + E+ E GL+P+ YNL
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 121 FFRVFYWSNDLRSSWNLYCRMMGT-GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179
S+ L + L+ M + G P+ + L+ VE A +++N++
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226
G + + L GK A + M+ G P+ ++ ++
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 97/210 (46%)
Query: 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73
N +++ D ++E+ + + M+ I D +Y +I L + G +A L++M+E
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 74 YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS 133
+G +A +YN I ++ +A + M+ +G P+ TY+ D+ S
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD 193
L M G PN + +++ R K+ A ++ M ++G G ++ VL D
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 194 LLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223
LC KL A++ F +M HKP +V++
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 37/206 (17%)
Query: 16 LIDVYCKDRQVEKAYKIVEKM-RDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74
+I CK V A + EK +D + P + +Y +IGGL + A+DV ++K
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 75 GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134
GC PD TYN + S +
Sbjct: 815 GCIPDV-----------------------------------ATYNFLLDAYGKSGKIDEL 839
Query: 135 WNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWND-MVEKGFGSYILVSDVLFD 193
+ LY M C NT + ++ + V+ AL L+ D M ++ F L D
Sbjct: 840 FELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 899
Query: 194 LLCDMGKLVEAEKSFLEMIEKGHKPS 219
L G+L EA++ F M++ G +P+
Sbjct: 900 GLSKSGRLYEAKQLFEGMLDYGCRPN 925
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)
Query: 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEK-MRDEDISPDVISYTSIIGGLGLVGQPDKA 64
V PD V+ L+ K +E AYKI+ + + P + + +IG + D A
Sbjct: 673 VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNA 732
Query: 65 RDVLKEMKEYG-CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-GLSPNATTYNLFF 122
+ + G C + IR C + A L ++ + G+ P TYNL
Sbjct: 733 VSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLI 792
Query: 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG 182
++ + + +++ ++ TGC+P+ + FL+ + K++ +L+ +M
Sbjct: 793 GGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECE 852
Query: 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMI-EKGHKPSQVSF 223
+ + +++ L G + +A + +++ ++ P+ ++
Sbjct: 853 ANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTY 894
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,886,217
Number of Sequences: 539616
Number of extensions: 4027669
Number of successful extensions: 16258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 10673
Number of HSP's gapped (non-prelim): 3142
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)