Query 048616
Match_columns 272
No_of_seqs 488 out of 1282
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 11:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.7E-52 1.9E-56 356.1 33.6 269 1-271 498-768 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5E-51 1.1E-55 351.4 33.5 269 1-271 463-733 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-45 2.3E-50 314.6 25.1 257 2-271 251-508 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.2E-45 4.7E-50 312.7 26.6 257 1-271 149-440 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.7E-44 1.9E-48 309.3 26.7 201 7-211 250-450 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.2E-43 2.5E-48 308.5 26.6 259 3-271 316-639 (857)
7 PRK11788 tetratricopeptide rep 99.9 8.3E-21 1.8E-25 152.5 30.6 250 9-266 68-324 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 151.1 28.4 240 11-256 108-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 3E-17 6.4E-22 145.1 32.5 234 10-250 567-800 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 2.9E-17 6.3E-22 145.2 32.1 234 10-250 533-766 (899)
11 PRK15174 Vi polysaccharide exp 99.8 6.3E-15 1.4E-19 124.9 31.8 233 11-250 111-348 (656)
12 PRK15174 Vi polysaccharide exp 99.8 7E-15 1.5E-19 124.7 31.0 237 9-252 143-384 (656)
13 KOG4422 Uncharacterized conser 99.8 3.3E-15 7.2E-20 114.1 24.2 243 7-253 204-466 (625)
14 TIGR00990 3a0801s09 mitochondr 99.7 2.2E-14 4.8E-19 121.6 31.1 237 9-250 330-572 (615)
15 TIGR00990 3a0801s09 mitochondr 99.7 1.6E-13 3.5E-18 116.4 32.5 240 6-250 156-497 (615)
16 PF13429 TPR_15: Tetratricopep 99.7 2.5E-16 5.4E-21 120.7 13.7 230 15-250 13-244 (280)
17 PF13429 TPR_15: Tetratricopep 99.7 5.1E-16 1.1E-20 119.0 12.9 232 9-248 43-276 (280)
18 PRK09782 bacteriophage N4 rece 99.7 4.2E-13 9.2E-18 117.1 30.9 231 9-250 476-707 (987)
19 COG2956 Predicted N-acetylgluc 99.7 3.3E-13 7.1E-18 99.7 23.5 226 22-250 47-279 (389)
20 PRK10747 putative protoheme IX 99.7 7.2E-13 1.6E-17 106.3 27.7 231 18-262 126-366 (398)
21 TIGR02521 type_IV_pilW type IV 99.6 1.2E-12 2.5E-17 97.6 26.4 203 43-249 29-232 (234)
22 TIGR02521 type_IV_pilW type IV 99.6 1.9E-12 4E-17 96.5 27.2 203 8-214 29-232 (234)
23 PRK10747 putative protoheme IX 99.6 1.7E-12 3.7E-17 104.2 28.1 234 6-248 147-389 (398)
24 PRK09782 bacteriophage N4 rece 99.6 5.1E-12 1.1E-16 110.5 31.0 234 7-249 506-740 (987)
25 PRK11447 cellulose synthase su 99.6 5.1E-12 1.1E-16 114.2 31.4 236 9-250 384-701 (1157)
26 PRK11447 cellulose synthase su 99.6 4.8E-12 1E-16 114.4 30.8 233 12-248 463-739 (1157)
27 KOG1155 Anaphase-promoting com 99.6 2.9E-12 6.3E-17 99.0 24.3 256 5-268 257-551 (559)
28 TIGR00540 hemY_coli hemY prote 99.6 3.8E-12 8.2E-17 102.7 26.2 96 15-111 123-218 (409)
29 PRK12370 invasion protein regu 99.6 9.5E-12 2.1E-16 104.1 29.2 232 9-248 255-501 (553)
30 KOG1126 DNA-binding cell divis 99.6 6.6E-13 1.4E-17 106.6 21.0 219 26-249 335-586 (638)
31 PF13041 PPR_2: PPR repeat fam 99.6 4.5E-15 9.8E-20 81.9 6.3 50 8-57 1-50 (50)
32 COG2956 Predicted N-acetylgluc 99.6 2.4E-11 5.3E-16 90.0 27.0 247 9-266 68-324 (389)
33 KOG4626 O-linked N-acetylgluco 99.6 6.9E-13 1.5E-17 106.1 19.7 231 11-250 253-486 (966)
34 PRK12370 invasion protein regu 99.6 1.3E-11 2.8E-16 103.3 27.8 218 24-250 318-536 (553)
35 KOG1155 Anaphase-promoting com 99.6 8.7E-12 1.9E-16 96.5 24.1 227 18-248 235-494 (559)
36 KOG4422 Uncharacterized conser 99.6 7.4E-12 1.6E-16 96.1 23.4 119 79-201 206-328 (625)
37 KOG4318 Bicoid mRNA stability 99.6 8.3E-14 1.8E-18 115.0 13.8 247 1-269 16-283 (1088)
38 KOG1126 DNA-binding cell divis 99.6 2.1E-12 4.6E-17 103.8 21.4 234 11-250 354-621 (638)
39 TIGR00540 hemY_coli hemY prote 99.6 3.8E-11 8.3E-16 96.9 28.0 117 23-142 97-214 (409)
40 KOG4626 O-linked N-acetylgluco 99.5 2.8E-12 6E-17 102.7 20.0 233 11-250 219-452 (966)
41 PRK10049 pgaA outer membrane p 99.5 1E-10 2.2E-15 101.5 30.1 238 8-250 47-340 (765)
42 PF13041 PPR_2: PPR repeat fam 99.5 5.9E-14 1.3E-18 77.4 6.7 47 79-125 2-48 (50)
43 KOG2003 TPR repeat-containing 99.5 2.2E-11 4.8E-16 94.4 22.8 245 19-272 428-709 (840)
44 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.3E-15 87.0 26.6 122 23-146 97-218 (400)
45 COG3071 HemY Uncharacterized e 99.5 4.4E-10 9.6E-15 85.6 27.6 234 11-248 119-389 (400)
46 KOG1129 TPR repeat-containing 99.5 1.4E-11 3E-16 91.5 18.8 231 14-250 227-459 (478)
47 PRK10049 pgaA outer membrane p 99.5 1.4E-10 2.9E-15 100.8 27.6 220 27-250 213-457 (765)
48 PRK14574 hmsH outer membrane p 99.5 7.8E-10 1.7E-14 95.3 30.4 91 17-110 109-199 (822)
49 KOG1840 Kinesin light chain [C 99.5 1.3E-10 2.8E-15 93.9 24.0 238 10-247 199-477 (508)
50 PRK11189 lipoprotein NlpI; Pro 99.4 7.5E-10 1.6E-14 85.4 25.8 227 24-262 40-275 (296)
51 COG3063 PilF Tfp pilus assembl 99.4 1.3E-09 2.9E-14 77.3 24.4 210 46-263 36-246 (250)
52 PRK11189 lipoprotein NlpI; Pro 99.4 1.8E-09 3.8E-14 83.4 26.1 212 10-231 64-282 (296)
53 COG3063 PilF Tfp pilus assembl 99.4 6.6E-09 1.4E-13 73.8 24.2 209 11-225 36-245 (250)
54 KOG2076 RNA polymerase III tra 99.3 2.1E-08 4.6E-13 83.9 30.0 256 6-264 135-493 (895)
55 KOG0547 Translocase of outer m 99.3 2.3E-09 5E-14 84.0 22.2 224 19-248 335-565 (606)
56 PRK14574 hmsH outer membrane p 99.3 1.2E-08 2.7E-13 88.1 28.3 198 50-250 297-514 (822)
57 KOG1129 TPR repeat-containing 99.3 2.7E-10 5.8E-15 84.9 15.4 204 7-214 253-458 (478)
58 KOG1840 Kinesin light chain [C 99.3 7E-09 1.5E-13 84.1 23.3 228 44-271 198-464 (508)
59 PF12569 NARP1: NMDA receptor- 99.3 5.3E-08 1.2E-12 79.8 28.4 229 17-250 11-292 (517)
60 KOG0495 HAT repeat protein [RN 99.2 6.8E-08 1.5E-12 78.6 26.5 246 11-266 517-762 (913)
61 KOG2002 TPR-containing nuclear 99.2 1.8E-08 3.9E-13 85.0 24.1 236 9-250 269-526 (1018)
62 PF12854 PPR_1: PPR repeat 99.2 1.7E-11 3.6E-16 61.0 4.1 34 4-37 1-34 (34)
63 KOG2003 TPR repeat-containing 99.2 1.4E-08 3E-13 79.3 21.7 206 22-234 502-708 (840)
64 KOG1173 Anaphase-promoting com 99.2 2.9E-08 6.4E-13 79.2 23.9 253 5-266 239-531 (611)
65 KOG0495 HAT repeat protein [RN 99.2 1.4E-07 3E-12 76.9 26.8 234 10-250 584-847 (913)
66 PF12569 NARP1: NMDA receptor- 99.2 2.9E-07 6.2E-12 75.6 28.9 235 10-248 38-333 (517)
67 PF04733 Coatomer_E: Coatomer 99.2 4.1E-09 8.9E-14 80.4 16.2 226 10-250 35-266 (290)
68 KOG2002 TPR-containing nuclear 99.1 5.1E-08 1.1E-12 82.4 22.1 240 4-248 446-744 (1018)
69 KOG0547 Translocase of outer m 99.1 2.6E-08 5.6E-13 78.3 18.7 196 13-213 363-565 (606)
70 PLN02789 farnesyltranstransfer 99.1 1E-06 2.2E-11 68.3 27.1 231 11-247 38-300 (320)
71 KOG1070 rRNA processing protei 99.1 3.2E-07 7E-12 80.6 25.7 232 9-247 1457-1698(1710)
72 PF04733 Coatomer_E: Coatomer 99.1 3.5E-08 7.6E-13 75.4 18.1 200 7-219 63-268 (290)
73 KOG1174 Anaphase-promoting com 99.1 9.8E-07 2.1E-11 68.3 25.5 152 94-250 314-501 (564)
74 KOG2076 RNA polymerase III tra 99.1 3.8E-07 8.2E-12 76.7 25.1 236 9-247 206-510 (895)
75 KOG1173 Anaphase-promoting com 99.1 6E-07 1.3E-11 72.0 24.0 207 40-250 239-485 (611)
76 KOG4318 Bicoid mRNA stability 99.0 1.6E-08 3.4E-13 84.7 15.3 208 31-256 11-240 (1088)
77 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.6E-11 69.9 26.0 228 18-250 51-294 (355)
78 KOG1070 rRNA processing protei 99.0 3.7E-07 8E-12 80.2 23.6 214 33-252 1447-1666(1710)
79 TIGR03302 OM_YfiO outer membra 99.0 3E-07 6.5E-12 68.8 20.4 187 9-214 32-232 (235)
80 PF12854 PPR_1: PPR repeat 99.0 7.7E-10 1.7E-14 55.0 3.8 32 75-106 2-33 (34)
81 TIGR03302 OM_YfiO outer membra 99.0 4.4E-07 9.4E-12 67.9 20.5 186 44-250 32-233 (235)
82 cd05804 StaR_like StaR_like; a 99.0 2.9E-06 6.3E-11 67.7 25.6 226 23-250 93-337 (355)
83 PRK10370 formate-dependent nit 99.0 1.3E-06 2.8E-11 63.2 21.1 119 93-214 52-173 (198)
84 PRK10370 formate-dependent nit 98.9 1.2E-06 2.6E-11 63.4 20.6 156 17-188 23-181 (198)
85 KOG1125 TPR repeat-containing 98.9 4E-07 8.7E-12 73.1 19.2 221 19-249 294-527 (579)
86 COG5010 TadD Flp pilus assembl 98.9 5.6E-07 1.2E-11 65.4 17.2 164 44-212 66-229 (257)
87 KOG1128 Uncharacterized conser 98.9 5.9E-07 1.3E-11 74.1 19.1 222 7-249 395-616 (777)
88 KOG4340 Uncharacterized conser 98.9 1.1E-06 2.4E-11 65.3 18.0 204 1-215 1-208 (459)
89 COG5010 TadD Flp pilus assembl 98.8 4.4E-06 9.5E-11 60.9 19.9 163 79-246 66-228 (257)
90 KOG1915 Cell cycle control pro 98.8 1.7E-05 3.6E-10 62.9 24.2 231 13-250 110-352 (677)
91 PRK15359 type III secretion sy 98.8 5.3E-07 1.1E-11 61.7 14.2 95 48-144 27-121 (144)
92 PRK15359 type III secretion sy 98.8 1.7E-06 3.7E-11 59.2 16.5 91 121-213 30-120 (144)
93 PRK15179 Vi polysaccharide bio 98.8 4.8E-06 1E-10 71.1 22.4 136 41-179 82-217 (694)
94 KOG3060 Uncharacterized conser 98.8 1.9E-05 4.1E-10 57.5 22.3 125 85-213 57-182 (289)
95 PRK15179 Vi polysaccharide bio 98.8 7E-06 1.5E-10 70.2 22.8 146 76-225 82-227 (694)
96 KOG1915 Cell cycle control pro 98.8 3.9E-05 8.5E-10 60.9 25.8 67 5-73 169-235 (677)
97 KOG1128 Uncharacterized conser 98.8 6.8E-07 1.5E-11 73.7 15.0 192 10-213 424-615 (777)
98 PRK14720 transcript cleavage f 98.7 2.4E-05 5.3E-10 68.0 24.5 218 6-231 26-268 (906)
99 TIGR02552 LcrH_SycD type III s 98.7 1.8E-06 4E-11 58.5 14.8 97 46-144 18-114 (135)
100 PLN02789 farnesyltranstransfer 98.7 4.1E-05 8.8E-10 59.6 23.6 198 48-250 40-251 (320)
101 KOG3081 Vesicle coat complex C 98.7 2.3E-05 4.9E-10 57.5 20.1 221 15-250 46-272 (299)
102 TIGR02552 LcrH_SycD type III s 98.7 2.8E-06 6.1E-11 57.6 15.0 90 122-213 24-113 (135)
103 KOG1156 N-terminal acetyltrans 98.7 4.5E-05 9.9E-10 62.6 23.7 197 23-225 54-257 (700)
104 COG4783 Putative Zn-dependent 98.7 6.7E-05 1.4E-09 59.7 23.8 118 89-210 315-433 (484)
105 KOG2376 Signal recognition par 98.7 1.7E-05 3.8E-10 64.2 20.9 229 15-259 17-263 (652)
106 KOG1914 mRNA cleavage and poly 98.7 8.6E-05 1.9E-09 59.9 24.2 112 151-265 367-480 (656)
107 COG4783 Putative Zn-dependent 98.7 5.4E-05 1.2E-09 60.2 22.7 192 8-225 272-464 (484)
108 KOG1156 N-terminal acetyltrans 98.7 7.3E-05 1.6E-09 61.4 23.7 246 11-267 9-262 (700)
109 TIGR00756 PPR pentatricopeptid 98.7 5.4E-08 1.2E-12 49.0 4.1 33 12-44 2-34 (35)
110 KOG2047 mRNA splicing factor [ 98.7 0.00013 2.7E-09 60.2 24.7 43 11-55 249-291 (835)
111 KOG1125 TPR repeat-containing 98.6 1.1E-05 2.5E-10 65.0 18.4 228 9-241 318-563 (579)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.6E-06 7.8E-11 66.8 15.7 122 49-176 173-294 (395)
113 PF10037 MRP-S27: Mitochondria 98.6 9E-07 2E-11 70.5 12.2 124 5-128 61-186 (429)
114 KOG3081 Vesicle coat complex C 98.6 7.7E-05 1.7E-09 54.8 23.4 228 5-250 5-237 (299)
115 PF13812 PPR_3: Pentatricopept 98.6 7.6E-08 1.7E-12 48.1 3.8 33 11-43 2-34 (34)
116 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.2E-05 2.6E-10 63.9 17.7 124 82-211 171-294 (395)
117 PRK14720 transcript cleavage f 98.6 2.5E-05 5.4E-10 67.9 20.7 187 44-250 30-253 (906)
118 PF10037 MRP-S27: Mitochondria 98.6 2.4E-06 5.1E-11 68.1 13.3 125 39-163 60-186 (429)
119 TIGR00756 PPR pentatricopeptid 98.6 1.3E-07 2.9E-12 47.5 4.3 33 187-219 2-34 (35)
120 KOG4340 Uncharacterized conser 98.6 9.1E-06 2E-10 60.6 15.1 201 46-256 11-214 (459)
121 KOG2376 Signal recognition par 98.6 0.00026 5.5E-09 57.8 24.9 115 151-270 377-505 (652)
122 KOG1174 Anaphase-promoting com 98.5 0.0002 4.4E-09 56.0 24.8 238 6-248 190-466 (564)
123 KOG3060 Uncharacterized conser 98.5 0.00013 2.8E-09 53.3 24.9 188 23-214 25-220 (289)
124 PF09976 TPR_21: Tetratricopep 98.5 2E-05 4.3E-10 54.1 15.4 115 93-210 24-143 (145)
125 PF09976 TPR_21: Tetratricopep 98.5 1.6E-05 3.5E-10 54.6 14.9 85 88-174 56-142 (145)
126 PF13812 PPR_3: Pentatricopept 98.5 2.3E-07 5E-12 46.3 4.3 33 186-218 2-34 (34)
127 PRK04841 transcriptional regul 98.5 0.00015 3.3E-09 65.2 25.0 239 12-250 493-761 (903)
128 KOG2053 Mitochondrial inherita 98.5 0.00053 1.1E-08 58.6 25.9 224 20-250 19-256 (932)
129 KOG4162 Predicted calmodulin-b 98.5 0.0006 1.3E-08 57.4 24.6 230 16-250 484-784 (799)
130 PRK04841 transcriptional regul 98.4 0.00064 1.4E-08 61.3 26.2 233 17-249 459-720 (903)
131 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.4E-05 7.5E-10 50.8 13.7 99 12-110 4-106 (119)
132 PF01535 PPR: PPR repeat; Int 98.4 5.7E-07 1.2E-11 43.7 3.4 29 12-40 2-30 (31)
133 PF08579 RPM2: Mitochondrial r 98.4 1.2E-05 2.6E-10 50.9 10.0 76 52-127 32-116 (120)
134 PF08579 RPM2: Mitochondrial r 98.4 1.3E-05 2.9E-10 50.7 10.1 70 162-231 37-115 (120)
135 cd00189 TPR Tetratricopeptide 98.3 2.6E-05 5.6E-10 48.8 11.4 94 13-108 3-96 (100)
136 KOG2053 Mitochondrial inherita 98.3 0.0012 2.6E-08 56.6 23.4 207 4-216 39-257 (932)
137 KOG0624 dsRNA-activated protei 98.3 0.00071 1.5E-08 51.9 23.5 226 19-250 115-371 (504)
138 PF05843 Suf: Suppressor of fo 98.3 9E-05 1.9E-09 56.8 15.7 82 165-248 51-135 (280)
139 PF05843 Suf: Suppressor of fo 98.3 4.9E-05 1.1E-09 58.3 14.1 142 11-158 2-148 (280)
140 KOG3617 WD40 and TPR repeat-co 98.3 0.00017 3.6E-09 61.3 17.8 211 9-247 756-994 (1416)
141 TIGR02795 tol_pal_ybgF tol-pal 98.3 9E-05 2E-09 48.8 13.6 97 48-144 5-105 (119)
142 KOG3785 Uncharacterized conser 98.3 8.5E-05 1.8E-09 56.9 14.1 192 51-250 291-491 (557)
143 cd00189 TPR Tetratricopeptide 98.2 8.3E-05 1.8E-09 46.4 12.4 93 154-248 4-96 (100)
144 PF01535 PPR: PPR repeat; Int 98.2 1.7E-06 3.6E-11 42.0 3.4 29 187-215 2-30 (31)
145 KOG0985 Vesicle coat protein c 98.2 0.00089 1.9E-08 58.4 20.9 158 79-268 1103-1260(1666)
146 PF12895 Apc3: Anaphase-promot 98.2 3.8E-06 8.3E-11 51.7 5.6 81 23-105 2-83 (84)
147 PLN03088 SGT1, suppressor of 98.2 0.00011 2.4E-09 58.4 14.7 94 16-111 8-101 (356)
148 PRK15363 pathogenicity island 98.2 9.7E-05 2.1E-09 50.3 11.7 98 45-144 35-132 (157)
149 KOG4162 Predicted calmodulin-b 98.2 0.0016 3.6E-08 54.9 20.9 207 6-214 319-542 (799)
150 KOG3616 Selective LIM binding 98.2 0.00028 6.1E-09 59.4 16.3 107 122-241 739-845 (1636)
151 PRK02603 photosystem I assembl 98.2 0.00031 6.6E-09 49.8 14.7 115 45-164 35-165 (172)
152 PF12895 Apc3: Anaphase-promot 98.2 6.9E-06 1.5E-10 50.6 5.6 79 59-139 3-82 (84)
153 PLN03088 SGT1, suppressor of 98.1 0.00022 4.7E-09 56.7 15.1 87 125-213 12-98 (356)
154 KOG0548 Molecular co-chaperone 98.1 0.0028 6.1E-08 51.3 21.1 219 13-248 227-454 (539)
155 PRK10866 outer membrane biogen 98.1 0.0018 3.9E-08 48.5 18.9 183 45-247 32-239 (243)
156 KOG3785 Uncharacterized conser 98.1 0.0017 3.7E-08 50.1 18.2 185 17-214 29-214 (557)
157 PF06239 ECSIT: Evolutionarily 98.1 0.00025 5.5E-09 50.8 13.1 103 114-235 46-153 (228)
158 PF06239 ECSIT: Evolutionarily 98.1 9E-05 1.9E-09 53.0 10.7 111 29-141 33-165 (228)
159 PRK02603 photosystem I assembl 98.1 0.00061 1.3E-08 48.3 15.3 116 80-200 35-166 (172)
160 PRK10153 DNA-binding transcrip 98.1 0.00055 1.2E-08 57.0 16.9 137 40-180 332-483 (517)
161 KOG2047 mRNA splicing factor [ 98.1 0.0044 9.6E-08 51.6 25.2 128 12-140 389-536 (835)
162 CHL00033 ycf3 photosystem I as 98.1 0.0003 6.5E-09 49.6 13.3 114 26-140 15-138 (168)
163 PRK10866 outer membrane biogen 98.1 0.0023 4.9E-08 48.0 20.3 183 10-212 32-239 (243)
164 PF14938 SNAP: Soluble NSF att 98.1 0.001 2.2E-08 51.2 17.0 26 11-36 36-61 (282)
165 PRK15363 pathogenicity island 98.1 0.0011 2.3E-08 45.4 14.9 98 80-179 35-132 (157)
166 PF14938 SNAP: Soluble NSF att 98.0 0.001 2.2E-08 51.3 16.6 199 46-247 36-261 (282)
167 KOG1127 TPR repeat-containing 98.0 0.0038 8.2E-08 54.5 20.7 182 26-213 474-658 (1238)
168 KOG3616 Selective LIM binding 98.0 0.00066 1.4E-08 57.3 15.7 168 19-211 741-908 (1636)
169 KOG1914 mRNA cleavage and poly 98.0 0.0051 1.1E-07 50.1 20.5 185 62-249 310-501 (656)
170 CHL00033 ycf3 photosystem I as 98.0 0.00034 7.4E-09 49.4 12.5 81 80-161 35-117 (168)
171 PF12688 TPR_5: Tetratrico pep 98.0 0.0012 2.7E-08 43.3 14.0 90 18-107 9-102 (120)
172 KOG0985 Vesicle coat protein c 98.0 0.0032 7E-08 55.1 19.6 83 11-101 1105-1187(1666)
173 KOG1127 TPR repeat-containing 98.0 0.0008 1.7E-08 58.4 16.0 164 11-179 493-659 (1238)
174 PRK10153 DNA-binding transcrip 98.0 0.0038 8.3E-08 52.1 19.6 144 76-224 333-490 (517)
175 KOG0624 dsRNA-activated protei 98.0 0.0047 1E-07 47.5 22.1 195 15-214 160-370 (504)
176 PF14559 TPR_19: Tetratricopep 97.9 8.2E-05 1.8E-09 43.6 7.0 52 162-214 3-54 (68)
177 PF14559 TPR_19: Tetratricopep 97.9 7.3E-05 1.6E-09 43.8 6.1 52 57-109 3-54 (68)
178 KOG0553 TPR repeat-containing 97.8 0.00068 1.5E-08 50.9 11.7 99 88-190 89-187 (304)
179 PF13432 TPR_16: Tetratricopep 97.8 0.00029 6.2E-09 40.9 7.9 53 160-213 7-59 (65)
180 PF03704 BTAD: Bacterial trans 97.8 0.0019 4.1E-08 44.4 13.3 71 82-153 64-139 (146)
181 PF13432 TPR_16: Tetratricopep 97.8 0.00019 4.1E-09 41.6 7.1 56 18-74 5-60 (65)
182 PF12688 TPR_5: Tetratrico pep 97.8 0.003 6.6E-08 41.5 13.2 92 51-142 7-102 (120)
183 KOG2796 Uncharacterized conser 97.8 0.0082 1.8E-07 44.5 15.9 155 52-214 156-315 (366)
184 KOG0553 TPR repeat-containing 97.8 0.00093 2E-08 50.2 11.3 102 55-160 91-192 (304)
185 PF13414 TPR_11: TPR repeat; P 97.8 0.0002 4.4E-09 42.1 6.7 63 45-108 3-66 (69)
186 PRK10803 tol-pal system protei 97.7 0.0018 3.8E-08 49.1 13.0 97 13-109 146-246 (263)
187 KOG2796 Uncharacterized conser 97.7 0.002 4.3E-08 47.7 12.3 159 16-182 155-318 (366)
188 PF13414 TPR_11: TPR repeat; P 97.7 0.00037 8E-09 40.9 7.2 63 10-73 3-66 (69)
189 KOG0548 Molecular co-chaperone 97.7 0.02 4.3E-07 46.7 19.5 192 10-214 257-455 (539)
190 KOG3617 WD40 and TPR repeat-co 97.7 0.0073 1.6E-07 51.9 16.6 166 20-212 810-994 (1416)
191 COG4235 Cytochrome c biogenesi 97.7 0.012 2.7E-07 44.5 16.3 99 114-214 155-256 (287)
192 PF13525 YfiO: Outer membrane 97.7 0.011 2.5E-07 43.1 19.5 46 191-238 147-196 (203)
193 PF13525 YfiO: Outer membrane 97.6 0.012 2.5E-07 43.0 17.4 179 16-205 11-198 (203)
194 PRK10803 tol-pal system protei 97.6 0.003 6.6E-08 47.8 12.8 98 151-250 144-247 (263)
195 COG4235 Cytochrome c biogenesi 97.6 0.013 2.8E-07 44.4 15.5 102 77-180 153-257 (287)
196 PF03704 BTAD: Bacterial trans 97.5 0.0026 5.6E-08 43.7 10.5 71 152-223 64-139 (146)
197 PF12921 ATP13: Mitochondrial 97.5 0.0026 5.6E-08 42.2 9.9 48 76-123 48-96 (126)
198 PF12921 ATP13: Mitochondrial 97.5 0.004 8.8E-08 41.3 10.4 85 9-93 1-101 (126)
199 PF13371 TPR_9: Tetratricopept 97.5 0.0016 3.5E-08 38.6 7.7 55 19-74 4-58 (73)
200 PF13371 TPR_9: Tetratricopept 97.4 0.0023 5E-08 37.9 8.0 50 162-212 7-56 (73)
201 PRK15331 chaperone protein Sic 97.4 0.016 3.5E-07 40.0 12.4 87 55-143 47-133 (165)
202 COG4700 Uncharacterized protei 97.3 0.028 6E-07 39.6 18.8 169 49-224 60-231 (251)
203 PRK15331 chaperone protein Sic 97.3 0.03 6.4E-07 38.7 12.7 87 90-178 47-133 (165)
204 KOG1130 Predicted G-alpha GTPa 97.2 0.003 6.5E-08 49.8 8.6 228 19-247 26-302 (639)
205 KOG2114 Vacuolar assembly/sort 97.2 0.021 4.5E-07 49.2 13.6 177 12-211 336-516 (933)
206 PF13424 TPR_12: Tetratricopep 97.2 0.0022 4.7E-08 38.6 6.0 61 11-71 6-72 (78)
207 PF13424 TPR_12: Tetratricopep 97.1 0.0043 9.3E-08 37.3 7.0 62 186-247 6-73 (78)
208 PF13281 DUF4071: Domain of un 97.0 0.11 2.5E-06 41.3 19.3 167 82-250 143-335 (374)
209 PF04840 Vps16_C: Vps16, C-ter 97.0 0.11 2.3E-06 40.8 19.3 84 117-210 179-262 (319)
210 KOG0543 FKBP-type peptidyl-pro 97.0 0.043 9.4E-07 43.4 12.9 96 151-249 258-355 (397)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.036 7.9E-07 44.8 12.6 64 114-179 74-141 (453)
212 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.12 2.7E-06 41.6 15.1 144 11-160 398-545 (660)
213 PF07035 Mic1: Colon cancer-as 96.9 0.069 1.5E-06 37.3 14.7 137 100-250 14-150 (167)
214 COG4700 Uncharacterized protei 96.9 0.075 1.6E-06 37.5 20.1 135 112-250 86-227 (251)
215 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.069 1.5E-06 43.2 13.7 66 8-74 73-141 (453)
216 PF04184 ST7: ST7 protein; In 96.8 0.2 4.4E-06 41.0 17.4 159 51-225 174-336 (539)
217 COG1729 Uncharacterized protei 96.8 0.1 2.3E-06 39.1 13.2 99 10-109 142-244 (262)
218 PF04840 Vps16_C: Vps16, C-ter 96.8 0.18 3.9E-06 39.6 19.6 109 82-210 179-287 (319)
219 COG3118 Thioredoxin domain-con 96.7 0.17 3.6E-06 38.5 16.3 145 88-235 142-287 (304)
220 COG1729 Uncharacterized protei 96.7 0.16 3.4E-06 38.2 13.1 99 151-250 143-245 (262)
221 PF09205 DUF1955: Domain of un 96.6 0.11 2.3E-06 34.5 14.9 67 150-217 86-152 (161)
222 PF13281 DUF4071: Domain of un 96.6 0.28 6E-06 39.1 21.9 169 44-214 140-334 (374)
223 KOG1538 Uncharacterized conser 96.5 0.41 8.9E-06 40.7 18.3 215 14-249 602-846 (1081)
224 KOG3941 Intermediate in Toll s 96.5 0.038 8.1E-07 41.7 9.1 89 7-95 64-173 (406)
225 KOG0543 FKBP-type peptidyl-pro 96.5 0.21 4.5E-06 39.7 13.5 126 87-214 215-355 (397)
226 COG3629 DnrI DNA-binding trans 96.5 0.069 1.5E-06 40.6 10.4 97 26-126 137-238 (280)
227 KOG4555 TPR repeat-containing 96.5 0.13 2.9E-06 34.0 10.4 91 54-145 52-145 (175)
228 smart00299 CLH Clathrin heavy 96.4 0.15 3.3E-06 34.6 15.0 22 154-175 73-94 (140)
229 KOG3941 Intermediate in Toll s 96.4 0.1 2.3E-06 39.4 10.9 99 44-142 66-186 (406)
230 KOG2610 Uncharacterized conser 96.4 0.25 5.5E-06 38.4 13.1 152 58-211 116-273 (491)
231 PF10300 DUF3808: Protein of u 96.4 0.46 1E-05 39.6 17.2 158 87-248 195-375 (468)
232 PF09613 HrpB1_HrpK: Bacterial 96.4 0.18 3.9E-06 34.8 11.8 52 126-179 21-73 (160)
233 PF08631 SPO22: Meiosis protei 96.4 0.32 7E-06 37.5 26.0 222 21-246 4-272 (278)
234 COG3898 Uncharacterized membra 96.3 0.39 8.4E-06 38.2 24.8 158 22-183 132-296 (531)
235 PF10300 DUF3808: Protein of u 96.3 0.54 1.2E-05 39.2 18.0 160 50-212 193-374 (468)
236 PF04053 Coatomer_WDAD: Coatom 96.3 0.35 7.6E-06 39.9 14.2 105 48-179 298-402 (443)
237 smart00299 CLH Clathrin heavy 96.3 0.2 4.3E-06 34.0 15.0 84 50-141 12-95 (140)
238 PF13428 TPR_14: Tetratricopep 96.2 0.028 6.1E-07 29.4 5.5 27 83-109 4-30 (44)
239 KOG0550 Molecular chaperone (D 96.2 0.48 1E-05 37.9 16.7 158 88-250 177-351 (486)
240 PF04053 Coatomer_WDAD: Coatom 96.2 0.17 3.6E-06 41.7 12.0 131 12-175 297-427 (443)
241 KOG1585 Protein required for f 96.2 0.35 7.5E-06 35.9 17.1 195 11-208 32-250 (308)
242 COG3629 DnrI DNA-binding trans 96.1 0.14 2.9E-06 39.1 10.4 78 116-194 154-236 (280)
243 COG4105 ComL DNA uptake lipopr 96.1 0.39 8.4E-06 35.9 19.4 186 45-248 35-232 (254)
244 COG4105 ComL DNA uptake lipopr 96.1 0.4 8.7E-06 35.8 20.5 81 10-91 35-117 (254)
245 COG0457 NrfG FOG: TPR repeat [ 96.0 0.4 8.7E-06 35.0 24.3 225 23-250 36-266 (291)
246 PF13428 TPR_14: Tetratricopep 96.0 0.034 7.4E-07 29.1 4.9 27 13-39 4-30 (44)
247 KOG2610 Uncharacterized conser 95.9 0.61 1.3E-05 36.4 16.0 154 22-177 115-274 (491)
248 KOG4555 TPR repeat-containing 95.8 0.32 7E-06 32.3 11.5 92 88-180 51-145 (175)
249 KOG1538 Uncharacterized conser 95.7 0.63 1.4E-05 39.6 13.2 194 1-214 626-846 (1081)
250 PF13170 DUF4003: Protein of u 95.7 0.76 1.6E-05 35.7 18.0 130 61-192 78-224 (297)
251 PF10602 RPN7: 26S proteasome 95.6 0.44 9.4E-06 33.9 10.7 96 46-141 37-139 (177)
252 KOG1130 Predicted G-alpha GTPa 95.5 0.48 1E-05 38.0 11.4 240 11-250 56-345 (639)
253 PF13512 TPR_18: Tetratricopep 95.5 0.45 9.8E-06 32.2 12.1 70 56-125 21-92 (142)
254 KOG4570 Uncharacterized conser 95.5 0.36 7.7E-06 37.2 10.3 128 51-180 25-165 (418)
255 PF09205 DUF1955: Domain of un 95.5 0.43 9.4E-06 31.8 13.8 139 22-182 14-152 (161)
256 COG3898 Uncharacterized membra 95.4 1.1 2.3E-05 35.9 25.2 190 23-219 97-297 (531)
257 KOG4570 Uncharacterized conser 95.4 0.16 3.5E-06 39.0 8.2 104 4-109 58-164 (418)
258 COG3118 Thioredoxin domain-con 95.4 0.89 1.9E-05 34.8 17.7 147 52-201 141-288 (304)
259 PF10602 RPN7: 26S proteasome 95.4 0.32 6.8E-06 34.6 9.4 62 81-142 37-100 (177)
260 PF09613 HrpB1_HrpK: Bacterial 95.4 0.57 1.2E-05 32.4 12.5 20 90-109 54-73 (160)
261 COG5107 RNA14 Pre-mRNA 3'-end 95.4 1.2 2.7E-05 36.2 21.3 132 115-249 397-531 (660)
262 KOG2041 WD40 repeat protein [G 95.3 1.7 3.7E-05 37.6 17.1 184 7-211 689-904 (1189)
263 KOG2041 WD40 repeat protein [G 95.3 1.6 3.4E-05 37.8 14.1 185 42-246 689-904 (1189)
264 PF07035 Mic1: Colon cancer-as 95.3 0.66 1.4E-05 32.5 15.4 131 33-177 17-147 (167)
265 TIGR02561 HrpB1_HrpK type III 95.2 0.61 1.3E-05 31.8 11.0 19 161-179 55-73 (153)
266 PF13512 TPR_18: Tetratricopep 95.1 0.63 1.4E-05 31.5 12.6 79 86-164 16-96 (142)
267 PF13170 DUF4003: Protein of u 95.1 1.2 2.6E-05 34.6 19.9 133 96-230 78-227 (297)
268 PF13929 mRNA_stabil: mRNA sta 95.0 1.2 2.5E-05 34.2 14.7 137 95-231 143-289 (292)
269 PF13176 TPR_7: Tetratricopept 95.0 0.081 1.8E-06 26.2 4.1 24 83-106 2-25 (36)
270 KOG0550 Molecular chaperone (D 95.0 1.5 3.3E-05 35.3 17.7 157 19-179 178-350 (486)
271 PF04184 ST7: ST7 protein; In 95.0 1.6 3.5E-05 36.1 13.0 82 182-264 256-338 (539)
272 PF13176 TPR_7: Tetratricopept 94.9 0.079 1.7E-06 26.3 3.9 23 13-35 2-24 (36)
273 PF02284 COX5A: Cytochrome c o 94.9 0.54 1.2E-05 29.6 9.3 65 10-74 8-74 (108)
274 COG4649 Uncharacterized protei 94.9 0.89 1.9E-05 31.9 14.1 123 92-214 70-196 (221)
275 KOG1585 Protein required for f 94.8 1.2 2.6E-05 33.2 16.0 196 45-243 31-250 (308)
276 COG0457 NrfG FOG: TPR repeat [ 94.8 1.1 2.4E-05 32.6 27.8 202 10-214 59-265 (291)
277 PF13929 mRNA_stabil: mRNA sta 94.8 1.4 3E-05 33.7 13.3 147 48-197 134-290 (292)
278 COG4649 Uncharacterized protei 94.7 1 2.2E-05 31.7 13.2 139 44-183 58-200 (221)
279 KOG2114 Vacuolar assembly/sort 94.5 3.1 6.8E-05 36.7 15.2 141 18-176 376-516 (933)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.54 1.2E-05 29.3 7.2 45 28-72 25-69 (103)
281 PRK11906 transcriptional regul 94.0 2.9 6.3E-05 34.4 16.1 157 14-175 257-432 (458)
282 PF11207 DUF2989: Protein of u 94.0 1.1 2.3E-05 32.4 9.2 81 53-135 115-198 (203)
283 KOG1550 Extracellular protein 93.6 4.3 9.4E-05 34.9 17.8 182 26-215 228-427 (552)
284 PF13374 TPR_10: Tetratricopep 93.1 0.31 6.7E-06 24.7 4.2 27 11-37 3-29 (42)
285 KOG1941 Acetylcholine receptor 93.0 3.9 8.4E-05 32.6 15.3 225 22-246 18-272 (518)
286 KOG2280 Vacuolar assembly/sort 92.9 6 0.00013 34.6 18.5 110 114-242 683-792 (829)
287 PF00515 TPR_1: Tetratricopept 92.9 0.52 1.1E-05 22.7 4.6 27 82-108 3-29 (34)
288 PF08631 SPO22: Meiosis protei 92.8 3.6 7.7E-05 31.8 23.2 199 12-212 38-273 (278)
289 PF13431 TPR_17: Tetratricopep 92.8 0.19 4E-06 24.6 2.8 21 79-99 12-32 (34)
290 PF13374 TPR_10: Tetratricopep 92.8 0.42 9.1E-06 24.2 4.4 28 81-108 3-30 (42)
291 KOG1550 Extracellular protein 92.7 6 0.00013 34.1 18.5 181 61-251 228-428 (552)
292 PF00515 TPR_1: Tetratricopept 92.7 0.52 1.1E-05 22.7 4.5 26 188-213 4-29 (34)
293 PF00637 Clathrin: Region in C 92.6 0.051 1.1E-06 37.1 0.9 53 52-104 14-66 (143)
294 COG4455 ImpE Protein of avirul 92.5 1.1 2.5E-05 32.7 7.4 76 152-228 3-80 (273)
295 PF13431 TPR_17: Tetratricopep 92.4 0.22 4.7E-06 24.4 2.8 22 114-135 12-33 (34)
296 PF07719 TPR_2: Tetratricopept 92.3 0.66 1.4E-05 22.2 4.6 26 83-108 4-29 (34)
297 PF07163 Pex26: Pex26 protein; 92.3 3.9 8.5E-05 31.2 10.1 57 51-107 89-145 (309)
298 TIGR02561 HrpB1_HrpK type III 92.3 2.6 5.6E-05 28.8 11.4 50 23-74 23-73 (153)
299 COG1747 Uncharacterized N-term 92.2 6.3 0.00014 33.0 21.3 164 44-215 65-235 (711)
300 PF07719 TPR_2: Tetratricopept 92.1 0.66 1.4E-05 22.2 4.5 24 190-213 6-29 (34)
301 PF00637 Clathrin: Region in C 92.0 0.13 2.8E-06 35.0 2.4 85 86-177 13-97 (143)
302 COG4455 ImpE Protein of avirul 91.9 2.3 5.1E-05 31.2 8.3 77 12-89 3-81 (273)
303 PF07163 Pex26: Pex26 protein; 91.9 4.2 9.1E-05 31.1 9.9 89 85-173 88-181 (309)
304 PF02284 COX5A: Cytochrome c o 91.8 2.2 4.8E-05 27.0 9.5 58 134-192 29-86 (108)
305 KOG2280 Vacuolar assembly/sort 91.7 8.7 0.00019 33.7 17.9 226 11-246 508-770 (829)
306 PRK11906 transcriptional regul 91.7 6.7 0.00015 32.4 15.7 80 132-213 321-400 (458)
307 PF11207 DUF2989: Protein of u 91.6 3.9 8.5E-05 29.6 9.9 79 90-170 117-198 (203)
308 COG1747 Uncharacterized N-term 91.5 7.6 0.00016 32.6 21.1 179 9-195 65-249 (711)
309 PF13174 TPR_6: Tetratricopept 91.2 0.89 1.9E-05 21.5 4.3 25 226-250 6-30 (33)
310 COG4785 NlpI Lipoprotein NlpI, 91.0 4.9 0.00011 29.6 15.0 186 20-216 75-268 (297)
311 PRK15180 Vi polysaccharide bio 90.9 6.9 0.00015 32.5 10.9 120 127-250 301-421 (831)
312 KOG4648 Uncharacterized conser 90.8 3.9 8.4E-05 32.3 9.1 88 124-213 106-193 (536)
313 PF02259 FAT: FAT domain; Int 90.7 7.2 0.00016 31.1 17.0 66 183-248 144-212 (352)
314 COG4785 NlpI Lipoprotein NlpI, 90.5 5.6 0.00012 29.3 15.5 183 58-250 78-267 (297)
315 KOG1920 IkappaB kinase complex 90.5 15 0.00032 34.2 16.5 53 192-247 972-1026(1265)
316 PF13174 TPR_6: Tetratricopept 90.2 0.71 1.5E-05 21.8 3.4 23 87-109 7-29 (33)
317 KOG2063 Vacuolar assembly/sort 89.8 15 0.00033 33.3 16.0 116 12-127 506-638 (877)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 89.6 3.6 7.9E-05 25.8 9.4 59 133-192 25-83 (103)
319 PF07721 TPR_4: Tetratricopept 89.4 0.71 1.5E-05 20.8 2.8 18 86-103 7-24 (26)
320 PF13181 TPR_8: Tetratricopept 89.4 1.5 3.1E-05 21.0 4.4 27 82-108 3-29 (34)
321 KOG0276 Vesicle coat complex C 88.9 14 0.00031 31.7 13.0 151 21-211 597-747 (794)
322 PHA02875 ankyrin repeat protei 88.6 8.9 0.00019 31.5 10.6 76 20-103 9-88 (413)
323 TIGR03504 FimV_Cterm FimV C-te 88.4 1.7 3.8E-05 22.7 4.1 20 158-177 7-26 (44)
324 TIGR03504 FimV_Cterm FimV C-te 88.2 1.6 3.4E-05 22.9 3.9 19 54-72 8-26 (44)
325 PF13181 TPR_8: Tetratricopept 88.0 1.9 4.1E-05 20.5 4.2 26 48-73 4-29 (34)
326 KOG0276 Vesicle coat complex C 88.0 13 0.00029 31.8 10.8 133 11-176 615-747 (794)
327 PF13762 MNE1: Mitochondrial s 87.9 6.7 0.00015 26.8 10.5 117 5-133 9-133 (145)
328 KOG1258 mRNA processing protei 87.7 17 0.00036 31.1 19.7 186 8-199 295-489 (577)
329 COG0735 Fur Fe2+/Zn2+ uptake r 87.7 7 0.00015 26.8 7.9 62 32-94 8-69 (145)
330 KOG4077 Cytochrome c oxidase, 87.4 6.5 0.00014 26.1 7.3 58 134-192 68-125 (149)
331 KOG1464 COP9 signalosome, subu 86.9 12 0.00026 28.7 19.8 203 3-206 19-252 (440)
332 PF11848 DUF3368: Domain of un 86.9 3.3 7.1E-05 22.1 5.1 32 196-227 13-44 (48)
333 PF14689 SPOB_a: Sensor_kinase 86.8 4.1 8.9E-05 23.2 5.5 46 166-213 6-51 (62)
334 COG0735 Fur Fe2+/Zn2+ uptake r 86.7 8 0.00017 26.5 7.8 61 103-164 9-69 (145)
335 KOG4234 TPR repeat-containing 86.1 11 0.00024 27.5 9.9 87 126-214 106-197 (271)
336 KOG1258 mRNA processing protei 86.0 21 0.00045 30.5 18.9 185 44-234 296-489 (577)
337 TIGR02508 type_III_yscG type I 85.9 6.8 0.00015 24.8 8.2 51 158-214 47-97 (115)
338 PRK09687 putative lyase; Provi 85.6 15 0.00032 28.5 24.1 236 7-269 34-279 (280)
339 PF08424 NRDE-2: NRDE-2, neces 85.4 17 0.00036 28.9 17.4 76 99-176 50-128 (321)
340 COG3947 Response regulator con 85.4 15 0.00033 28.5 11.4 50 123-173 287-336 (361)
341 KOG1920 IkappaB kinase complex 85.3 33 0.00071 32.2 17.4 78 125-212 949-1026(1265)
342 PF11848 DUF3368: Domain of un 85.2 4.2 9E-05 21.7 4.9 31 22-52 14-44 (48)
343 TIGR02508 type_III_yscG type I 85.0 7.6 0.00016 24.6 8.2 88 165-262 20-107 (115)
344 PRK09687 putative lyase; Provi 84.4 17 0.00037 28.2 26.2 186 44-245 36-231 (280)
345 COG3947 Response regulator con 84.2 18 0.00038 28.1 14.5 180 64-247 106-340 (361)
346 COG5108 RPO41 Mitochondrial DN 83.9 13 0.00027 32.5 8.9 75 120-197 33-115 (1117)
347 cd00280 TRFH Telomeric Repeat 83.9 12 0.00026 26.8 7.4 41 87-130 118-158 (200)
348 PF07079 DUF1347: Protein of u 83.8 24 0.00052 29.3 23.0 80 165-246 436-521 (549)
349 KOG4077 Cytochrome c oxidase, 83.7 10 0.00023 25.2 9.0 47 63-109 67-113 (149)
350 PF02259 FAT: FAT domain; Int 83.6 20 0.00044 28.5 20.5 66 148-213 144-212 (352)
351 PF10345 Cohesin_load: Cohesin 82.5 33 0.00072 30.1 19.7 183 29-212 40-252 (608)
352 COG2976 Uncharacterized protei 82.4 16 0.00035 26.4 14.0 57 192-250 133-189 (207)
353 KOG4507 Uncharacterized conser 82.3 21 0.00046 30.7 9.5 87 57-144 619-705 (886)
354 PHA02875 ankyrin repeat protei 82.3 26 0.00057 28.8 12.6 193 3-220 23-230 (413)
355 PRK15180 Vi polysaccharide bio 82.3 29 0.00062 29.2 14.1 88 55-144 333-420 (831)
356 PF11846 DUF3366: Domain of un 82.1 11 0.00023 27.3 7.2 62 48-109 111-173 (193)
357 PF11846 DUF3366: Domain of un 81.8 13 0.00028 26.8 7.6 33 182-214 141-173 (193)
358 PF10579 Rapsyn_N: Rapsyn N-te 81.6 6.5 0.00014 23.6 4.8 46 57-102 18-65 (80)
359 PF09454 Vps23_core: Vps23 cor 81.1 5.6 0.00012 22.9 4.3 50 7-57 5-54 (65)
360 KOG4234 TPR repeat-containing 81.0 19 0.00042 26.3 13.1 92 88-180 103-198 (271)
361 COG5159 RPN6 26S proteasome re 80.9 24 0.00052 27.4 11.7 36 189-224 129-168 (421)
362 PF11663 Toxin_YhaV: Toxin wit 80.7 1.9 4.2E-05 28.8 2.6 21 59-79 109-129 (140)
363 PF04097 Nic96: Nup93/Nic96; 80.4 40 0.00087 29.6 11.8 221 18-246 266-531 (613)
364 KOG1586 Protein required for f 79.9 23 0.0005 26.6 14.1 19 54-72 23-41 (288)
365 PF13762 MNE1: Mitochondrial s 79.8 17 0.00036 24.9 11.0 80 83-162 42-127 (145)
366 KOG4648 Uncharacterized conser 79.6 18 0.00039 28.8 7.8 99 158-262 105-203 (536)
367 PF10579 Rapsyn_N: Rapsyn N-te 79.5 11 0.00024 22.7 5.4 16 190-205 48-63 (80)
368 cd00280 TRFH Telomeric Repeat 79.5 20 0.00044 25.7 7.6 24 121-144 117-140 (200)
369 smart00028 TPR Tetratricopepti 79.4 4.4 9.6E-05 18.0 3.5 26 13-38 4-29 (34)
370 PRK09462 fur ferric uptake reg 78.8 6.2 0.00013 27.1 4.9 62 35-97 7-69 (148)
371 cd08819 CARD_MDA5_2 Caspase ac 78.2 13 0.00029 22.8 6.6 36 92-132 48-83 (88)
372 COG5108 RPO41 Mitochondrial DN 78.1 26 0.00056 30.7 8.8 75 15-92 33-115 (1117)
373 COG2976 Uncharacterized protei 77.2 25 0.00055 25.5 14.4 129 81-215 55-189 (207)
374 PF10345 Cohesin_load: Cohesin 76.6 52 0.0011 28.9 19.5 193 44-246 29-251 (608)
375 PF06552 TOM20_plant: Plant sp 76.6 25 0.00054 25.2 9.2 28 201-230 96-123 (186)
376 PF07079 DUF1347: Protein of u 75.6 46 0.001 27.8 24.2 193 56-250 90-328 (549)
377 KOG0890 Protein kinase of the 75.1 70 0.0015 32.7 11.6 150 50-208 1388-1541(2382)
378 PF11663 Toxin_YhaV: Toxin wit 75.1 3.8 8.3E-05 27.4 2.8 29 198-228 108-136 (140)
379 PF09477 Type_III_YscG: Bacter 74.9 20 0.00043 23.1 9.4 78 130-214 21-98 (116)
380 KOG4507 Uncharacterized conser 74.4 31 0.00067 29.8 8.2 100 92-193 619-718 (886)
381 PRK11639 zinc uptake transcrip 73.7 29 0.00063 24.5 7.8 59 37-96 18-76 (169)
382 PRK10564 maltose regulon perip 73.7 10 0.00022 29.5 5.1 31 188-218 260-290 (303)
383 PRK10564 maltose regulon perip 73.5 9.3 0.0002 29.7 4.8 28 49-76 261-288 (303)
384 PF07575 Nucleopor_Nup85: Nup8 72.7 19 0.00041 31.2 7.2 32 197-228 507-538 (566)
385 KOG2063 Vacuolar assembly/sort 72.3 63 0.0014 29.7 10.1 116 117-232 506-638 (877)
386 PF14689 SPOB_a: Sensor_kinase 72.1 16 0.00034 20.8 5.0 47 200-248 5-51 (62)
387 KOG2908 26S proteasome regulat 71.9 49 0.0011 26.4 11.5 57 122-178 82-143 (380)
388 PF07575 Nucleopor_Nup85: Nup8 71.8 18 0.00039 31.4 6.8 26 162-187 507-532 (566)
389 PF09477 Type_III_YscG: Bacter 71.5 24 0.00053 22.7 9.3 78 61-145 22-99 (116)
390 PF06552 TOM20_plant: Plant sp 71.3 35 0.00076 24.5 10.6 42 131-180 96-137 (186)
391 KOG4567 GTPase-activating prot 71.2 43 0.00093 26.3 7.8 71 100-175 263-343 (370)
392 KOG2297 Predicted translation 70.7 50 0.0011 26.0 17.0 18 147-164 220-237 (412)
393 PRK11639 zinc uptake transcrip 70.6 35 0.00076 24.1 7.7 58 107-165 18-75 (169)
394 PF03745 DUF309: Domain of unk 69.5 19 0.0004 20.5 5.7 16 127-142 11-26 (62)
395 PF08424 NRDE-2: NRDE-2, neces 69.3 56 0.0012 26.0 17.2 118 62-181 48-185 (321)
396 PF11817 Foie-gras_1: Foie gra 69.0 45 0.00098 25.3 7.8 58 84-141 182-244 (247)
397 PF12862 Apc5: Anaphase-promot 68.9 25 0.00054 21.8 6.1 23 86-108 47-69 (94)
398 PF12926 MOZART2: Mitotic-spin 68.6 25 0.00053 21.6 7.6 42 31-72 29-70 (88)
399 KOG0687 26S proteasome regulat 68.3 59 0.0013 25.9 13.2 136 110-247 65-208 (393)
400 PF12862 Apc5: Anaphase-promot 68.3 26 0.00057 21.8 6.4 54 20-73 8-69 (94)
401 PF11817 Foie-gras_1: Foie gra 68.2 50 0.0011 25.0 8.3 58 189-246 182-244 (247)
402 cd07153 Fur_like Ferric uptake 68.2 15 0.00033 23.8 4.6 41 19-59 9-49 (116)
403 KOG1586 Protein required for f 67.9 50 0.0011 24.9 20.9 86 129-214 128-224 (288)
404 PRK09462 fur ferric uptake reg 67.7 37 0.0008 23.3 7.9 62 70-132 7-69 (148)
405 PF14853 Fis1_TPR_C: Fis1 C-te 67.2 19 0.00041 19.7 5.6 32 193-226 9-40 (53)
406 KOG2582 COP9 signalosome, subu 66.7 68 0.0015 26.0 14.6 200 47-250 104-346 (422)
407 PHA03100 ankyrin repeat protei 66.6 78 0.0017 26.6 10.1 21 196-220 258-278 (480)
408 cd08819 CARD_MDA5_2 Caspase ac 66.6 28 0.0006 21.5 7.5 15 163-177 49-63 (88)
409 cd07153 Fur_like Ferric uptake 66.3 29 0.00062 22.5 5.6 40 55-94 10-49 (116)
410 KOG2659 LisH motif-containing 66.2 53 0.0011 24.5 9.4 23 85-107 69-91 (228)
411 PF01475 FUR: Ferric uptake re 65.0 13 0.00028 24.4 3.8 44 51-94 13-56 (120)
412 COG5187 RPN7 26S proteasome re 64.7 66 0.0014 25.2 11.1 99 149-247 114-219 (412)
413 PF07678 A2M_comp: A-macroglob 64.5 60 0.0013 24.6 9.2 44 97-142 116-159 (246)
414 PF01475 FUR: Ferric uptake re 64.5 26 0.00056 22.9 5.1 47 85-131 12-58 (120)
415 KOG4567 GTPase-activating prot 63.3 73 0.0016 25.2 8.0 71 65-140 263-343 (370)
416 PF10366 Vps39_1: Vacuolar sor 62.8 39 0.00084 21.8 7.0 27 187-213 41-67 (108)
417 PF09670 Cas_Cas02710: CRISPR- 62.7 85 0.0018 25.7 11.5 55 54-109 140-198 (379)
418 COG2909 MalT ATP-dependent tra 62.6 1.3E+02 0.0027 27.7 19.8 224 22-245 427-684 (894)
419 COG5187 RPN7 26S proteasome re 61.7 76 0.0017 24.8 12.3 97 44-142 114-219 (412)
420 PF09670 Cas_Cas02710: CRISPR- 60.0 96 0.0021 25.4 11.3 56 18-74 139-198 (379)
421 COG5159 RPN6 26S proteasome re 59.6 84 0.0018 24.6 19.4 158 16-173 9-188 (421)
422 COG2909 MalT ATP-dependent tra 59.3 1.5E+02 0.0032 27.3 20.4 197 56-252 426-650 (894)
423 PF11123 DNA_Packaging_2: DNA 59.3 35 0.00076 20.2 4.6 33 165-198 12-44 (82)
424 KOG2066 Vacuolar assembly/sort 59.0 1.4E+02 0.003 27.0 15.4 102 17-127 363-467 (846)
425 smart00386 HAT HAT (Half-A-TPR 58.9 17 0.00037 16.5 3.7 15 25-39 2-16 (33)
426 PF14669 Asp_Glu_race_2: Putat 58.4 70 0.0015 23.3 13.9 179 3-210 1-206 (233)
427 KOG0991 Replication factor C, 57.7 82 0.0018 23.9 12.4 137 11-156 131-279 (333)
428 PF04097 Nic96: Nup93/Nic96; 57.4 1.4E+02 0.003 26.5 17.4 48 9-58 111-158 (613)
429 PF00244 14-3-3: 14-3-3 protei 57.0 83 0.0018 23.8 9.7 57 85-141 6-63 (236)
430 KOG1464 COP9 signalosome, subu 56.4 93 0.002 24.1 18.1 223 39-262 20-274 (440)
431 KOG2062 26S proteasome regulat 56.2 1.5E+02 0.0034 26.7 12.9 27 188-214 213-239 (929)
432 PF04090 RNA_pol_I_TF: RNA pol 56.0 78 0.0017 23.2 7.8 28 12-39 43-70 (199)
433 KOG3807 Predicted membrane pro 55.5 1.1E+02 0.0023 24.6 17.5 113 93-216 229-342 (556)
434 KOG2066 Vacuolar assembly/sort 54.9 1.7E+02 0.0036 26.6 13.0 150 52-212 363-532 (846)
435 COG0790 FOG: TPR repeat, SEL1 54.7 98 0.0021 23.9 21.9 50 60-112 92-145 (292)
436 PRK09857 putative transposase; 54.6 1E+02 0.0022 24.2 10.5 62 189-251 210-271 (292)
437 KOG1941 Acetylcholine receptor 53.7 1.2E+02 0.0026 24.7 19.2 129 48-177 125-273 (518)
438 KOG0687 26S proteasome regulat 53.4 1.2E+02 0.0025 24.4 15.6 151 24-178 36-209 (393)
439 COG4941 Predicted RNA polymera 52.8 1.2E+02 0.0026 24.4 11.8 115 96-214 272-394 (415)
440 PF09454 Vps23_core: Vps23 cor 52.7 44 0.00095 19.3 5.7 46 185-231 8-53 (65)
441 KOG3364 Membrane protein invol 52.7 72 0.0016 21.8 9.0 88 59-149 12-103 (149)
442 PF04190 DUF410: Protein of un 51.7 1.1E+02 0.0024 23.5 17.3 88 16-103 16-113 (260)
443 PF11838 ERAP1_C: ERAP1-like C 51.5 1.2E+02 0.0026 23.9 19.7 144 96-245 146-304 (324)
444 KOG3807 Predicted membrane pro 50.9 1.3E+02 0.0028 24.2 14.1 109 129-250 230-341 (556)
445 PRK09857 putative transposase; 50.8 1.2E+02 0.0026 23.8 11.0 66 153-219 209-274 (292)
446 PRK10941 hypothetical protein; 50.4 1.2E+02 0.0025 23.5 10.7 56 121-177 187-242 (269)
447 COG0790 FOG: TPR repeat, SEL1 49.7 1.2E+02 0.0026 23.5 20.8 117 24-146 91-222 (292)
448 KOG0376 Serine-threonine phosp 49.7 1.1E+02 0.0023 25.8 7.0 86 89-177 13-99 (476)
449 KOG1114 Tripeptidyl peptidase 49.6 2.3E+02 0.0049 26.6 12.9 164 97-271 1092-1281(1304)
450 KOG0376 Serine-threonine phosp 49.5 63 0.0014 27.1 5.8 109 122-235 11-120 (476)
451 COG2405 Predicted nucleic acid 49.2 49 0.0011 22.5 4.2 34 195-228 119-152 (157)
452 KOG3636 Uncharacterized conser 49.1 1.6E+02 0.0034 24.7 14.2 89 143-232 176-272 (669)
453 KOG1166 Mitotic checkpoint ser 49.0 2.2E+02 0.0048 26.9 9.5 63 162-224 90-153 (974)
454 PF10475 DUF2450: Protein of u 48.4 1.3E+02 0.0028 23.5 10.0 112 86-208 104-220 (291)
455 PRK13184 pknD serine/threonine 47.9 2.4E+02 0.0053 26.5 18.9 23 17-39 482-504 (932)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 47.7 82 0.0018 21.0 9.6 43 168-210 81-124 (126)
457 KOG2471 TPR repeat-containing 47.3 1.3E+02 0.0028 25.7 7.1 106 20-127 250-381 (696)
458 KOG1308 Hsp70-interacting prot 46.9 19 0.00042 28.6 2.5 92 22-116 126-218 (377)
459 PF15297 CKAP2_C: Cytoskeleton 46.8 1.5E+02 0.0033 23.9 10.0 63 132-196 120-186 (353)
460 PF10366 Vps39_1: Vacuolar sor 46.6 78 0.0017 20.4 8.0 26 118-143 42-67 (108)
461 KOG4642 Chaperone-dependent E3 46.3 1.3E+02 0.0029 22.9 10.9 118 19-140 19-142 (284)
462 KOG1308 Hsp70-interacting prot 46.1 39 0.00085 27.0 4.0 92 127-221 126-218 (377)
463 PF10475 DUF2450: Protein of u 46.0 1.4E+02 0.0031 23.3 10.0 112 49-171 102-218 (291)
464 PF15297 CKAP2_C: Cytoskeleton 44.9 1.7E+02 0.0036 23.7 9.5 66 165-232 118-187 (353)
465 PRK10941 hypothetical protein; 44.7 1.5E+02 0.0032 23.0 10.7 77 48-125 184-261 (269)
466 COG2137 OraA Uncharacterized p 44.6 1.1E+02 0.0025 21.8 13.6 72 100-175 55-126 (174)
467 PF13934 ELYS: Nuclear pore co 44.1 1.4E+02 0.0029 22.4 16.0 20 121-140 114-133 (226)
468 PF09986 DUF2225: Uncharacteri 43.9 1.3E+02 0.0029 22.3 11.3 23 87-109 172-194 (214)
469 PF11768 DUF3312: Protein of u 43.8 2.2E+02 0.0047 24.7 10.7 22 120-141 413-434 (545)
470 KOG2062 26S proteasome regulat 43.6 2.5E+02 0.0055 25.4 10.7 65 61-125 39-105 (929)
471 PF12926 MOZART2: Mitotic-spin 43.0 80 0.0017 19.5 8.1 41 171-211 29-69 (88)
472 PRK08691 DNA polymerase III su 42.7 2.6E+02 0.0056 25.3 11.3 90 130-222 179-282 (709)
473 PF04034 DUF367: Domain of unk 42.4 1E+02 0.0022 20.6 6.2 53 189-244 70-123 (127)
474 smart00638 LPD_N Lipoprotein N 41.4 2.4E+02 0.0053 24.6 23.9 231 26-264 291-538 (574)
475 KOG3677 RNA polymerase I-assoc 40.5 2.2E+02 0.0047 23.8 9.2 57 84-141 239-298 (525)
476 KOG2582 COP9 signalosome, subu 40.4 2E+02 0.0044 23.4 11.2 123 90-215 193-346 (422)
477 PRK13342 recombination factor 40.4 2.2E+02 0.0047 23.7 18.9 24 129-152 244-267 (413)
478 PF03745 DUF309: Domain of unk 40.4 71 0.0015 18.1 5.9 16 162-177 11-26 (62)
479 PF13934 ELYS: Nuclear pore co 40.0 1.6E+02 0.0034 22.1 11.2 106 118-234 79-186 (226)
480 KOG0686 COP9 signalosome, subu 39.5 2.2E+02 0.0048 23.6 14.1 64 11-74 151-216 (466)
481 COG2405 Predicted nucleic acid 39.1 95 0.0021 21.2 4.4 35 125-159 119-153 (157)
482 PRK12402 replication factor C 39.0 2E+02 0.0042 22.8 11.0 84 133-219 188-286 (337)
483 PF10963 DUF2765: Protein of u 38.5 94 0.002 19.0 5.0 32 6-37 12-43 (83)
484 PF09868 DUF2095: Uncharacteri 38.3 1.1E+02 0.0025 20.0 5.6 18 163-180 74-91 (128)
485 KOG4521 Nuclear pore complex, 38.0 3.8E+02 0.0083 25.9 13.8 155 89-246 929-1129(1480)
486 COG4259 Uncharacterized protei 37.8 1.1E+02 0.0024 19.6 6.3 53 64-118 56-108 (121)
487 KOG4814 Uncharacterized conser 37.8 3E+02 0.0065 24.6 9.2 86 125-212 364-455 (872)
488 PRK11619 lytic murein transgly 37.8 3E+02 0.0065 24.7 23.7 60 186-247 313-373 (644)
489 PF02631 RecX: RecX family; I 37.6 1.2E+02 0.0025 19.9 11.3 47 64-111 11-57 (121)
490 PF08870 DUF1832: Domain of un 37.6 1.2E+02 0.0025 19.9 5.9 9 99-107 8-16 (113)
491 KOG4642 Chaperone-dependent E3 37.4 1.9E+02 0.0041 22.2 11.3 118 55-176 20-143 (284)
492 KOG2659 LisH motif-containing 37.4 1.8E+02 0.0039 21.9 9.9 97 112-210 23-128 (228)
493 smart00544 MA3 Domain in DAP-5 37.1 1.1E+02 0.0025 19.5 10.8 60 14-75 6-67 (113)
494 COG2137 OraA Uncharacterized p 36.9 1.6E+02 0.0034 21.1 14.8 110 64-177 54-165 (174)
495 PF02607 B12-binding_2: B12 bi 36.8 91 0.002 18.3 4.7 36 197-232 13-48 (79)
496 PF10255 Paf67: RNA polymerase 36.7 2.5E+02 0.0054 23.4 14.1 59 83-141 125-190 (404)
497 PF11838 ERAP1_C: ERAP1-like C 36.7 2.1E+02 0.0045 22.5 21.2 82 131-215 146-231 (324)
498 COG0819 TenA Putative transcri 36.6 1.8E+02 0.0039 21.7 8.9 102 104-205 98-210 (218)
499 PRK14956 DNA polymerase III su 36.4 2.8E+02 0.006 23.8 12.7 31 110-142 197-227 (484)
500 KOG2297 Predicted translation 36.2 2.2E+02 0.0048 22.7 16.9 70 126-205 266-341 (412)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-52 Score=356.12 Aligned_cols=269 Identities=19% Similarity=0.282 Sum_probs=207.8
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCC
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE--YGCYP 78 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 78 (272)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4456777777777777777777777777777777777777777777777777777777777777777777765 45677
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
|..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777788778888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|.+.|+.++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888887777888888888888888888888888888888877888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 239 LQNLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 239 a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
|.++|++|.+.| +.||..||..+|.+|...|
T Consensus 738 Alelf~eM~~~G--i~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 738 ALEVLSEMKRLG--LCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCC
Confidence 888888888777 5688888888888876654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-51 Score=351.44 Aligned_cols=269 Identities=19% Similarity=0.269 Sum_probs=256.8
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (272)
|++.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVE--KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
.+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999986 57899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|+.++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 239 LQNLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 239 a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
|.++|++|.+.| +.||..+|+.+|.+|...|
T Consensus 703 A~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 703 ALELYEDIKSIK--LRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCC
Confidence 999999999888 6799999999999987665
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-45 Score=314.62 Aligned_cols=257 Identities=17% Similarity=0.231 Sum_probs=240.3
Q ss_pred CCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 048616 2 REMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA 81 (272)
Q Consensus 2 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (272)
.+.|+.||..+||+||++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3568889999999999999999999999999999964 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 478899999999999
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHHHhhhHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE-KGHKPSQVSFRRIKALMELANKQEALQ 240 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (272)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.++.+.|+.++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 599999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 241 NLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 241 ~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
+++++| + ..|+..+|++++.+|...|
T Consensus 483 ~~~~~~---~--~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 483 AMIRRA---P--FKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHC---C--CCCCHHHHHHHHHHHHHcC
Confidence 998875 3 6799999999999997655
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=312.69 Aligned_cols=257 Identities=21% Similarity=0.297 Sum_probs=212.1
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD- 79 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 79 (272)
|++.|+.||..+||.++.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 34567888888888888888888888888888887753 5777788888888888888888888888766655554
Q ss_pred ----------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 80 ----------------------------------AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 80 ----------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y 300 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGY 300 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHH
Confidence 44556777888888888888888888853 5888899999999
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+++|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999998888899999999999999999999999999999988888888888888888888888888888
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 206 KSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
++|++|. .||..+|+.|+.+|.+.|+.++|.++|++|.+.| +.||..||+.+|++|...|
T Consensus 381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCC
Confidence 8888884 4688888888888888888888888888888887 5688888888888887665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-44 Score=309.31 Aligned_cols=201 Identities=18% Similarity=0.317 Sum_probs=130.0
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.+
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 666666666666666666664 2456666666666666666666667777666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 666666666666666665555555555555555555555555443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-43 Score=308.52 Aligned_cols=259 Identities=18% Similarity=0.252 Sum_probs=159.9
Q ss_pred CCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 048616 3 EMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (272)
+.|+.||..+||++|.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 456666666666666666666666666666666642 4566666677777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (272)
|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+. |..+|+.++.+|++
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~ 467 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRL 467 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777542 22233333333333
Q ss_pred cCcHHHHHHHHHHHH----------------------------------HcCC---------------------------
Q 048616 163 QEKVEIALQLWNDMV----------------------------------EKGF--------------------------- 181 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~----------------------------------~~~~--------------------------- 181 (272)
.|+.++|..+|++|. +.|+
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 333333333333322 1111
Q ss_pred ---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCCCCCH
Q 048616 182 ---GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMA-LFGPSMIPKR 257 (272)
Q Consensus 182 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~p~~ 257 (272)
.+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.++++.++|+.|. +.| +.|+.
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g--i~P~~ 625 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS--ITPNL 625 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC--CCCch
Confidence 234445556666666666666666666666666666666666666666666666666666666666 344 44666
Q ss_pred HHHHHhhcccccCC
Q 048616 258 EEYLAEMSASDSFS 271 (272)
Q Consensus 258 ~~~~~ll~ac~~~~ 271 (272)
.+|+.+++++.+.|
T Consensus 626 ~~y~~lv~~l~r~G 639 (857)
T PLN03077 626 KHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666655444
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.3e-21 Score=152.54 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=196.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD---VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++++|..+|+++.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 456788888889999999999999998887532221 2457788888899999999999999998753 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 899999999999999999998876543322 234566777888899999999999887653 334567777888888
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQN 241 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (272)
+.|++++|.++++++.+.+......+++.+..+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887653333466788888999999999999999998876 5666667778888999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHhhcc
Q 048616 242 LSNKMALFGPSMIPKREEYLAEMSA 266 (272)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~ll~a 266 (272)
+++++.+.. |+..++..++..
T Consensus 304 ~l~~~l~~~----P~~~~~~~l~~~ 324 (389)
T PRK11788 304 LLREQLRRH----PSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHhC----cCHHHHHHHHHH
Confidence 999887654 888888776654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-20 Score=151.08 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=202.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA----AAYNAA 86 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 86 (272)
..+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++++.+.+..+.. ..+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 568888999999999999999999998763 346788999999999999999999999999886543322 245667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
...+.+.|++++|.+.|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..+..+|.+.|++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 77888999999999999999987432 56678888899999999999999999998764333346788899999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH---hhhHHHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL---ANKQEALQNLS 243 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~ 243 (272)
++|...++.+.+.. |+...+..+...+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++..++
T Consensus 266 ~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 266 AEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 99999999998774 45566688999999999999999999999876 7899899887776654 45888999999
Q ss_pred HHHHhcCCCCCCC
Q 048616 244 NKMALFGPSMIPK 256 (272)
Q Consensus 244 ~~~~~~~~~~~p~ 256 (272)
+++.+.++...|+
T Consensus 342 ~~~~~~~~~~~p~ 354 (389)
T PRK11788 342 RDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCCCC
Confidence 9999988777777
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=3e-17 Score=145.15 Aligned_cols=234 Identities=14% Similarity=0.074 Sum_probs=133.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...+..+...+.+.|++++|..+++.+.+.. +.+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444455555555555555555555555432 2345555556666666666666666666655442 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
+.+.|++++|..+++++.+.... +..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666665554322 34555555556666666666666666655543 33445555556666666666666
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
...+..+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...+...|+.++|...|+++.+.
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 66666665543 222444556666666666666666666666542 234455555666666667777777777776655
Q ss_pred C
Q 048616 250 G 250 (272)
Q Consensus 250 ~ 250 (272)
.
T Consensus 800 ~ 800 (899)
T TIGR02917 800 A 800 (899)
T ss_pred C
Confidence 4
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=2.9e-17 Score=145.18 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=130.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
..++..+...+.+.|++++|..+++++.+.+ +.+...+..+...+.+.|++++|..+++++.+.. +.+..+|..+..+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 3444444445555555555555555544432 2233444455555555555555555555555432 3345555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666555432 244455555555666666666666666555442 33445555566666666666666
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+... .|+..++..+..++...|+.++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666665554 334455555666666666666666666666654 334455555666666666666666666666654
Q ss_pred C
Q 048616 250 G 250 (272)
Q Consensus 250 ~ 250 (272)
.
T Consensus 766 ~ 766 (899)
T TIGR02917 766 H 766 (899)
T ss_pred C
Confidence 4
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=6.3e-15 Score=124.94 Aligned_cols=233 Identities=11% Similarity=0.038 Sum_probs=112.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...++++..... .+...+..+ ..+
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l 187 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHH
Confidence 344445555555555555555555555432 12344455555555555555555555555544321 112222222 224
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH--
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI-- 168 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 168 (272)
.+.|++++|...++.+.+....++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH
Confidence 4455555555555555443222222233333444555555555555555554432 2233444445555555555553
Q ss_pred --HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 169 --ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ-VSFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 169 --a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
|...++...+.. +.+...+..+...+.+.|++++|...+++..+. .|+. ..+..+..++...|++++|...+++
T Consensus 267 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 267 LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555443 223445555555555555666665555555543 2322 2233355555555556666555555
Q ss_pred HHhcC
Q 048616 246 MALFG 250 (272)
Q Consensus 246 ~~~~~ 250 (272)
+.+..
T Consensus 344 al~~~ 348 (656)
T PRK15174 344 LAREK 348 (656)
T ss_pred HHHhC
Confidence 55443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=7e-15 Score=124.67 Aligned_cols=237 Identities=11% Similarity=0.098 Sum_probs=193.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++++.+....++...+..+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4678888999999999999999999988776443 33344333 347889999999999999887643345555666678
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhh----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS----SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
.+.+.|++++|+..+++..+.... +...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 889999999999999999987543 67778889999999999986 899999998764 446778889999999999
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH-HHHHHHHHhhhHHHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNLS 243 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~ 243 (272)
++++|...+++..... +.+...+..+..++.+.|++++|.+.++.+.+. .|+...+. .+..++...|+.++|...|
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998875 445566778889999999999999999999876 55554444 3567889999999999999
Q ss_pred HHHHhcCCC
Q 048616 244 NKMALFGPS 252 (272)
Q Consensus 244 ~~~~~~~~~ 252 (272)
++..+..+.
T Consensus 376 ~~al~~~P~ 384 (656)
T PRK15174 376 EHYIQARAS 384 (656)
T ss_pred HHHHHhChh
Confidence 999887643
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.3e-15 Score=114.06 Aligned_cols=243 Identities=16% Similarity=0.273 Sum_probs=199.2
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+.+..+|.++|.+.|+-...++|.+++++-.....+.+..+||.+|.+-.-.. ..++..+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 44678999999999999999999999999998888889999999998765333 37899999999999999999999
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhh-HHHHHHHHHh----CCCC----CCHhhH
Q 048616 87 IRNYCIAKRLRDA----SGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS-SWNLYCRMMG----TGCL----PNTQSC 153 (272)
Q Consensus 87 ~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 153 (272)
+++..+.|+++.| .+++.+|.+.|+.|+..+|..+|..+.+.++..+ +..++.++.. +.++ -|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999987654 5778889999999999999999999999998865 4444444432 2222 244567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC----CCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKG----FGSY---ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (272)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-..+++.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788888989999999999887665431 2232 234566778889999999999999999887777888888889
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCC
Q 048616 227 KALMELANKQEALQNLSNKMALFGPSM 253 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (272)
+++....+.++-..+++..++..|...
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 999999999999999999999888443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.2e-14 Score=121.63 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=190.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|+.+...+...|++++|+..|++..+.... +...|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888888888999999999999999876432 46688888899999999999999999998764 346788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
.+...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999987543 56777788889999999999999999987753 4456788888999999999999
Q ss_pred HHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHH
Q 048616 169 ALQLWNDMVEKGFGSYI------LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL 242 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (272)
|...|+.........+. ..++.....+...|++++|.+++++..+... .+...+..+...+...|++++|..+
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999998876422111 1122222334457999999999999887632 2334567799999999999999999
Q ss_pred HHHHHhcC
Q 048616 243 SNKMALFG 250 (272)
Q Consensus 243 ~~~~~~~~ 250 (272)
|++..+..
T Consensus 565 ~e~A~~l~ 572 (615)
T TIGR00990 565 FERAAELA 572 (615)
T ss_pred HHHHHHHh
Confidence 99987654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=1.6e-13 Score=116.38 Aligned_cols=240 Identities=12% Similarity=0.013 Sum_probs=155.6
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH----------------
Q 048616 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLK---------------- 69 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 69 (272)
+.|+...|..+..+|.+.|++++|++.++...+.+.. +...|..+..++...|++++|+.-|.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 4567777777777888888888888888877765422 45566666666777777666654332
Q ss_pred --------------------------------------------------------------------------------
Q 048616 70 -------------------------------------------------------------------------------- 69 (272)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (272)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ----HHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 70 ----EMKEYG-CYP-DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 70 ----~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
+..+.+ ..| ....+..+...+...|++++|+..+++..+.... ....|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 011 2233445555556667777777777776665322 345666666677777777777777777765
Q ss_pred CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 048616 144 TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223 (272)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 223 (272)
.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +-+...+
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 53 3345666677777777777777777777777664 3345556666777777778888888777776642 2234566
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 224 RRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+.+..++...|++++|...|++..+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 667777777888888888888776654
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.5e-16 Score=120.74 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDED-ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677788899999999886654443 2335555666666777788889999999888876532 56667777766 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG-CLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766552 456667778888888888888888888876432 345666777788888888899999998
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+++..+.. +.+......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888775 3356677788888888888888888888877663 3444556678888888888888998888887765
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=5.1e-16 Score=119.02 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=112.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
|...|..+...+-..++++.|.+.++++...+.. +...+..++.. ...+++++|.+++++..+.. +++..+..++.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHH
Confidence 4455566666777789999999999999987644 66677778777 78999999999998877653 56777888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKG-LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
.+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++..+.. +-|......++..+...|+.+
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999987543 34577788889999999999999999999998873 335778888999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
++.+++....+.. +.+...+..+..++...|+.++|..+|++..+. .| |......+..++...|+.++|.++.++.
T Consensus 198 ~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 198 EAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 9999998888764 556677889999999999999999999999876 45 5555556999999999999999998876
Q ss_pred Hh
Q 048616 247 AL 248 (272)
Q Consensus 247 ~~ 248 (272)
.+
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 53
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=4.2e-13 Score=117.14 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=181.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56677777777776 88889999888877653 55544444455556899999999999998654 455556667778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
++.+.|+.++|...+++..+.+.. ....+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999999887532 3333333444455669999999999999876 4577888888999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
|...+++..... +.+...++.+..++...|+.++|.+.+++..+. .| +...+..+..++...|+.++|...+++..
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998876 556677888888999999999999999999886 44 44556678999999999999999999988
Q ss_pred hcC
Q 048616 248 LFG 250 (272)
Q Consensus 248 ~~~ 250 (272)
+..
T Consensus 705 ~l~ 707 (987)
T PRK09782 705 DDI 707 (987)
T ss_pred hcC
Confidence 655
No 19
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.3e-13 Score=99.66 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=157.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD---AAAYNAAIRNYCIAKRLRD 98 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 98 (272)
-+++.++|.++|-+|.+.+.. +..+.-+|.+.|.+.|..+.|+++.+.+.++.--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467889999999999886433 566677888999999999999999999987521111 1234456667888899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT----QSCMFLVKLCKRQEKVEIALQLWN 174 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 174 (272)
|+.+|..+.+.+.. -......|+..|...++|++|+++-+++...+-.+.. ..|.-+...+....+++.|...+.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999998876433 4566788889999999999999998888766544332 234555555556667777777777
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 175 DMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++...++.++.+..
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 776654 223333344556666777777777777777766444344445556777777777777777776666554
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=7.2e-13 Score=106.31 Aligned_cols=231 Identities=8% Similarity=-0.009 Sum_probs=123.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYT--SIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +-++.....+...|.+.|+
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Confidence 3346778888888888877764 33432222 33556777788888888888877764 3456677777778888888
Q ss_pred HHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 96 LRDASGLMDEMVEKGLSPNA-------TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
+++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHH
Confidence 88888777777765443211 11222222222222333333333333221 12344445555555566666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-HHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-FRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
|..++.+..+. .++... .++.+....++.+++.+..+...+. .|+... +..+...+.+.+++++|.+.|++..
T Consensus 282 A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 282 AQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666555543 233211 1222333445555566655555544 333332 3345555666666666666666655
Q ss_pred hcCCCCCCCHHHHHH
Q 048616 248 LFGPSMIPKREEYLA 262 (272)
Q Consensus 248 ~~~~~~~p~~~~~~~ 262 (272)
+.. |+..++..
T Consensus 356 ~~~----P~~~~~~~ 366 (398)
T PRK10747 356 KQR----PDAYDYAW 366 (398)
T ss_pred hcC----CCHHHHHH
Confidence 433 55444433
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=1.2e-12 Score=97.59 Aligned_cols=203 Identities=11% Similarity=0.004 Sum_probs=158.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345677788888888999999999999887753 345677788888888899999999999888877543 556777788
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 201 (272)
..+...|++++|.+.+++...... ......+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 888899999999999988876422 2234566667788889999999999999888764 33456777888889999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 202 VEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
++|.+.+++..+. .+.+...+..+...+...|+.+++..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3345556666778888889999999888877653
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=1.9e-12 Score=96.51 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=168.6
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 346778888999999999999999999998764 3367788889999999999999999999998864 34667888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLS-PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
..+...|++++|.+.+++....... .....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999999875322 234567778888999999999999999988764 33566788888999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
++|...+++..... +.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988763 455666777888888999999999998887653
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.7e-12 Score=104.16 Aligned_cols=234 Identities=10% Similarity=0.048 Sum_probs=185.5
Q ss_pred CCcCHHhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---
Q 048616 6 VKPDIVSYN--CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA--- 80 (272)
Q Consensus 6 ~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 80 (272)
..|+...+. .....+...|+++.|...++++.+..+. +......+...|.+.|++++|.+++.++.+.+..++.
T Consensus 147 ~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 147 LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 456654433 3356888999999999999999987644 7788899999999999999999999999987654322
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 81 ----AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 81 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
.+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+.... +
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 13333444444555667777777777554 2347778888999999999999999999998774 5555322 2
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhH
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQ 236 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (272)
+.+....++.+++.+..+...+.. +-|......+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 334446699999999999988775 556677888999999999999999999999986 79999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048616 237 EALQNLSNKMAL 248 (272)
Q Consensus 237 ~~a~~~~~~~~~ 248 (272)
++|.+++++-..
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=5.1e-12 Score=110.52 Aligned_cols=234 Identities=9% Similarity=-0.018 Sum_probs=185.0
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L 582 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL 582 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 355444334445556899999999999998664 3445556777888899999999999999998864 2333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
.....+.|++++|...+++..+.. |+...+..+...+.+.|++++|...+++..... +.+...+..+..++...|++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 444556699999999999999874 568889999999999999999999999998874 44567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV-SFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
++|+..++...+.. +.+...+..+..++...|++++|...+++..+. .|+.. ..-.......+..+++.+.+-+++
T Consensus 660 eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 660 AQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 456778889999999999999999999999876 56553 333467777778888888888877
Q ss_pred HHhc
Q 048616 246 MALF 249 (272)
Q Consensus 246 ~~~~ 249 (272)
....
T Consensus 737 ~~~~ 740 (987)
T PRK09782 737 RWTF 740 (987)
T ss_pred Hhhc
Confidence 5543
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.61 E-value=5.1e-12 Score=114.25 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=145.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH-------------------------------------
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSI------------------------------------- 51 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------- 51 (272)
+...+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 4456666777777778888888888777764322 22222222
Q ss_pred -----HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 52 -----IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 52 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 222334567777777777776653 224556666777777777777777777777654322 2222222222233
Q ss_pred hcCChhhHHHHHHHHHhC---------------------------------------CCCCCHhhHHHHHHHHHhcCcHH
Q 048616 127 WSNDLRSSWNLYCRMMGT---------------------------------------GCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
..+++++|...++.+... ..+.+...+..+...+.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 334444443333322100 01233445556667777888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS-QVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+|...|+...+.. +.+...+..+...+...|++++|.+.++...+. .|+ ...+..+..++...|+.++|.++++++
T Consensus 621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888887765 445667777888888888888888888877654 343 334445677777888888888888888
Q ss_pred HhcC
Q 048616 247 ALFG 250 (272)
Q Consensus 247 ~~~~ 250 (272)
....
T Consensus 698 l~~~ 701 (1157)
T PRK11447 698 IPQA 701 (1157)
T ss_pred hhhC
Confidence 7654
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.61 E-value=4.8e-12 Score=114.42 Aligned_cols=233 Identities=12% Similarity=0.085 Sum_probs=173.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
.+..+...+...|++++|++.|++..+..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3445667778899999999999999887543 66778888899999999999999999988653 223433333333344
Q ss_pred hcCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHhHHHHHHHHhhcCChh
Q 048616 92 IAKRLRDASGLMDEMVEK---------------------------------------GLSPNATTYNLFFRVFYWSNDLR 132 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~~~~ 132 (272)
..++.++|+..++.+... ..+++...+..+...+.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 445555555444332110 01235556677888899999999
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 133 SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
+|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.++++.+.
T Consensus 621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999998874 4567888999999999999999999999887653 3445566778888999999999999999998
Q ss_pred HcCCC--C---cHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 213 EKGHK--P---SQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 213 ~~~~~--p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
..... | +...+..+...+...|+.++|...|++...
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 75322 2 123455568889999999999999999864
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-12 Score=99.02 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=165.0
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHH------------------------------
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS--PDVISYTSII------------------------------ 52 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~------------------------------ 52 (272)
|++-+...-+....+.-...++++|+.+|+++.+.++- -|..+|+.++
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 45544444454555555678899999999999876421 1344554443
Q ss_pred -HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh
Q 048616 53 -GGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 53 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (272)
+-|+-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-++..++.++. |-..|..+.++|.-.+..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcch
Confidence 22334456677777777777764 234567777777777777777777777777776543 677777777777777777
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
.=|+-.|++...-. +-|...|.+|..+|.+.++.++|+.-|......| ..+...+..|.+.|-+.++..+|...|+..
T Consensus 415 ~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 415 FYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777776653 4567777777777777777777777777777665 335566777777777777777777777766
Q ss_pred HHc----CCC-CcHHhHH-HHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcccc
Q 048616 212 IEK----GHK-PSQVSFR-RIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASD 268 (272)
Q Consensus 212 ~~~----~~~-p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~ 268 (272)
++. |.. |...--. -|...+.+.+++++|..+.......+ |....-..|++-|+
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~----~e~eeak~LlReir 551 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE----TECEEAKALLREIR 551 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC----chHHHHHHHHHHHH
Confidence 542 222 2111111 25666677777777776665554332 44444455554443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=3.8e-12 Score=102.69 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
....++.+.|+++.|.+.+.+..+....+...........+...|+++.|...++++.+.. +-++.++..+...+.+.|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 3345666778888888888887664322222233334667777888888888888888764 335667777888888888
Q ss_pred CHHHHHHHHHHHHHcCC
Q 048616 95 RLRDASGLMDEMVEKGL 111 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~~~ 111 (272)
++++|.+.+..+.+.+.
T Consensus 202 d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGL 218 (409)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 88888888877776654
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=9.5e-12 Score=104.05 Aligned_cols=232 Identities=10% Similarity=-0.002 Sum_probs=167.6
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHHHHc
Q 048616 9 DIVSYNCLIDVYCK-----DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLG---------LVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 9 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 74 (272)
+...|...+.+-.. .+.+++|...|++..+..+. +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45556566665322 23467999999999886533 4556665555443 234578999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHH
Q 048616 75 GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCM 154 (272)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (272)
. +-+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+.. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 4 346778888888899999999999999999988643 5677888889999999999999999999877422 222333
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHHh
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF-RRIKALMELA 233 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~ 233 (272)
.++..+...|++++|...+++......+.+...+..+..++...|+.++|.+.+.++... .|+.... +.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 444456678999999999999876642334455677788888999999999999987654 4444443 3466666766
Q ss_pred hhHHHHHHHHHHHHh
Q 048616 234 NKQEALQNLSNKMAL 248 (272)
Q Consensus 234 ~~~~~a~~~~~~~~~ 248 (272)
|+ ++...++++.+
T Consensus 489 g~--~a~~~l~~ll~ 501 (553)
T PRK12370 489 SE--RALPTIREFLE 501 (553)
T ss_pred HH--HHHHHHHHHHH
Confidence 63 66666666554
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=6.6e-13 Score=106.62 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC------------------------------
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG------------------------------ 75 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------ 75 (272)
..+|+..|..+.+.. .-+......+.++|...+++++|.++|+.+.+..
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666666544432 2233455555666666666666666666554321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh
Q 048616 76 ---CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 76 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
-+-.+.+|..+.++|.-+++.+.|++.|++.++.... ...+|+.+-.-+.....+++|...|+.....+ +-+-..
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHH
Confidence 1225567777777777777777777777777765332 45666666666666777777777776655332 112234
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
|.-+...|.++++++.|+-.|+...+.+ +.+.+....+...+.+.|+.|+|++++++....+.+ |+..--.-+..+..
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFS 569 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHh
Confidence 4445556667777777777776666655 334455555566666667777777777666654332 22222224445555
Q ss_pred hhhHHHHHHHHHHHHhc
Q 048616 233 ANKQEALQNLSNKMALF 249 (272)
Q Consensus 233 ~~~~~~a~~~~~~~~~~ 249 (272)
.+++++|...++++++.
T Consensus 570 ~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 570 LGRYVEALQELEELKEL 586 (638)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 56666666666666653
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.59 E-value=4.5e-15 Score=81.91 Aligned_cols=50 Identities=42% Similarity=0.796 Sum_probs=41.5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (272)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.4e-11 Score=89.98 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=190.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDV------ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (272)
+..+.-+|-+.|.+.|.+++|+++-..+.++ ||. .....|..-|-..|-+|.|..+|..+.+.+ ..-...
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~A 143 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGA 143 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHH
Confidence 3445567788899999999999999988875 332 234456667888899999999999998864 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
...|+..|-...+|++|+++-+++...+..+.. ..|..+...+....+.++|..++.+..+.+ +-....-..+-+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~ 222 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhH
Confidence 788999999999999999999999988655432 356667777777889999999999988764 223444445667
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
.....|+++.|.+.|+.+.+.+...-..+...|..+|.+.|+.++...++..+.+. .+....-..+........-.+.
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHH
Confidence 88899999999999999999887666778889999999999999999999999886 3444444555555555555566
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhcc
Q 048616 239 LQNLSNKMALFGPSMIPKREEYLAEMSA 266 (272)
Q Consensus 239 a~~~~~~~~~~~~~~~p~~~~~~~ll~a 266 (272)
|..++.+-.... |+...+..+|..
T Consensus 301 Aq~~l~~Ql~r~----Pt~~gf~rl~~~ 324 (389)
T COG2956 301 AQAYLTRQLRRK----PTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHhhC----CcHHHHHHHHHh
Confidence 666666555544 888888887764
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=6.9e-13 Score=106.10 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=169.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD-AAAYNAAIRN 89 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 89 (272)
..|-.|-+.|...+.+++|...|.+...... .....+..+...|...|.++.|++.+++..+. .|+ +..|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHH
Confidence 4556666666667777777777766665422 24556666666677778888888888887765 344 5678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCcHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 168 (272)
+...|+..+|...+.+.+..... ...+.+.|..+|...|.++.|..+|....+- .|. ...++.+...|-++|++++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHH
Confidence 88888888888888888776432 4566777888888888888888888877654 333 4567788888888888888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV-SFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
|...+++..+.. +.-...|+.+...|...|+.+.|.+.+.+.+.. .|... .++.|...|...|+..+|.+-|++..
T Consensus 407 Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 407 AIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 888888887653 223467788888888888889998888888764 55443 44558889999999999999999877
Q ss_pred hcC
Q 048616 248 LFG 250 (272)
Q Consensus 248 ~~~ 250 (272)
+..
T Consensus 484 klk 486 (966)
T KOG4626|consen 484 KLK 486 (966)
T ss_pred ccC
Confidence 544
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.3e-11 Score=103.25 Aligned_cols=218 Identities=13% Similarity=0.047 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 24 RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLM 103 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (272)
+++++|...+++..+.++. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4589999999999987644 77888888889999999999999999999875 345678888899999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 048616 104 DEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183 (272)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (272)
++..+..+. +...+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++.... +.
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence 999988544 2333344455577789999999999998765322234456777788889999999999999876553 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 184 YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG-HKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+....+.+...+...| ++|...++.+.+.. ..|....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3344555666677777 47888787776531 12222222 55566667777777655 7776654
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.7e-12 Score=96.47 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=188.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH---------
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAYNAA--------- 86 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l--------- 86 (272)
.++....+.+++..-...+...|.+-+...-+....+.....|++.|+.+|+++.+...- -|..+|+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455677888888888888888767766666667777889999999999999876310 133444333
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 048616 87 ----------------------IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 87 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.+-|+-.++.++|...|++.++.+.. ....|+.+.+-|...++...|.+-+++..+-
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 33355667899999999999998755 6778999999999999999999999999887
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 048616 145 GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (272)
+ +-|-..|-.+-++|.-.+...-|.-+|++..... +.|..+|.+|.++|.+.++.++|.+.|......|-. +...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHH
Confidence 5 6688999999999999999999999999998875 678899999999999999999999999999887643 667888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 225 RIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.|...+.+.++.++|...|.+-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999888765
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.4e-12 Score=96.13 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
+..++..+|.+.++--..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4455555555555555555555555555544444455555555544322221 445555555555555555555555
Q ss_pred HHHhcCcHHH----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048616 159 LCKRQEKVEI----ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 159 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 201 (272)
+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 5555554443 234455555555555555555555555555444
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=8.3e-14 Score=115.00 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=156.5
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (272)
|+..|+.|+-.||.++|.-||..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356899999999999999999999999998 9999988888888999999999999999988876 6889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCCCHHhH--------------HHHHHHHhhcCChhhHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMV-------EKGLSPNATTY--------------NLFFRVFYWSNDLRSSWNLYC 139 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~ 139 (272)
.+|..|..+|.+.||+..-..+=+.|. ..|+.....-+ ...+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999765222222122 22322111111 112222233344444444444
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 140 RMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
.+......- ++..+++-+.... ...+++........-.|+..+|.+++++-...|+.+.|..++.+|.+.|++.+
T Consensus 164 ~~Pvsa~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 164 KVPVSAWNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hCCcccccc---hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 332211100 1111233332222 12222222222211146677777777777777777777777777777777777
Q ss_pred HHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccc
Q 048616 220 QVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASDS 269 (272)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~ 269 (272)
..-|..++.+ .++...++.+.+-|.+.| +.|+..|+.-.+..|.+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~g--v~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKG--VQPGSETQADYVIPQLS 283 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhc--CCCCcchhHHHHHhhhc
Confidence 6666665544 566666777777777777 56777777766665544
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.1e-12 Score=103.77 Aligned_cols=234 Identities=14% Similarity=0.083 Sum_probs=191.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------------------------------CCCCHhhHHHHHHHHHh
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDED---------------------------------ISPDVISYTSIIGGLGL 57 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~ 57 (272)
.+...+-.+|...+++++|.++|+.+.+.. -+-.+.+|..+.++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 566778889999999999999999887642 12356789999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNL 137 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (272)
+++.+.|++.|++..+.. +-...+|+.+..-+....++|.|...|+..+..... +-.+|.-+...|.+.++++.|+-.
T Consensus 434 Qkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHH
Confidence 999999999999999864 226789999999999999999999999998876333 455666788889999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 138 YCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (272)
|+...+-+ +-+.+....+...+-+.|+.++|++++++....+.+ |+..--.-...+...+++++|+..++++.+. .
T Consensus 512 fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--v 587 (638)
T KOG1126|consen 512 FQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--V 587 (638)
T ss_pred HHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--C
Confidence 99998775 446677778888899999999999999999877643 3333334566677899999999999999885 6
Q ss_pred CcHHh-HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 218 PSQVS-FRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 218 p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
|+..+ |..+...|.+.|+.+.|..-|--+....
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66555 4558899999999999998888877544
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.8e-11 Score=96.90 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDV-ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG 101 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (272)
.|+++.|.+.+.+..+.. |+. ..+-....+..+.|+.+.|.+.+++..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345555555554443332 221 11222233344445555555555544433211111122222444444455555555
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 102 LMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
.++.+.+.++. +...+..+...+.+.|++++|.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555444322 33344444444555555544444444443
No 40
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=2.8e-12 Score=102.74 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=179.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|..|-..+-..|+...|+..|++..+.++. =...|..|...|...+.+++|...+.+..... +.....+..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEE
Confidence 35666666677778888888888888775432 34567778888888888888888888877652 23466777788888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
...|.++.|+..+++.++..+. =...|+.|..++-..|++.+|...|.+..... +-.....+.+..++...|.+++|.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence 8889999999999888876332 35678889999999999999999998887763 334567788888999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ-VSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.+|.....-. +.-....+.|...|-+.|++++|...+++.+.. +|+. ..|+.+...|...|+.++|.+.+.+.+..
T Consensus 375 ~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 375 RLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9998877653 223456788888899999999999999998874 6654 35666888888999999999998887765
Q ss_pred C
Q 048616 250 G 250 (272)
Q Consensus 250 ~ 250 (272)
+
T Consensus 452 n 452 (966)
T KOG4626|consen 452 N 452 (966)
T ss_pred C
Confidence 4
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=1e-10 Score=101.52 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=167.4
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 345568888899999999999999999988763 3356677788888999999999999999998763 34555 88888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHH----------------------------
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYC---------------------------- 139 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------- 139 (272)
.++...|+.++|+..++++.+..+. +...+..+..++...+..++|+..++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 8899999999999999999987543 45555556666666666555444433
Q ss_pred ------------------HHHhC-CCCCCHh-hHH----HHHHHHHhcCcHHHHHHHHHHHHHcCCC-ccHHHHHHHHHH
Q 048616 140 ------------------RMMGT-GCLPNTQ-SCM----FLVKLCKRQEKVEIALQLWNDMVEKGFG-SYILVSDVLFDL 194 (272)
Q Consensus 140 ------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 194 (272)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 33321 1112211 111 1123445678899999999998877532 332 22225678
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 195 LCDMGKLVEAEKSFLEMIEKGHKP---SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+...|++++|...|+++.+..... .......+..++...|++++|..+++++.+..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 889999999999999987653211 12334456777889999999999999988754
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=5.9e-14 Score=77.41 Aligned_cols=47 Identities=34% Similarity=0.708 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
|..+|+.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.2e-11 Score=94.39 Aligned_cols=245 Identities=14% Similarity=0.045 Sum_probs=183.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH--HHH----------------------------------HHhcCChh
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSI--IGG----------------------------------LGLVGQPD 62 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~----------------------------------~~~~~~~~ 62 (272)
.+.+.|+++.|+++++-+.+.+-+.-...-+.| +.. ....|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 477899999999999887765332111111111 100 11248899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
+|.+.+++.....-.-....||. .-.+-..|++++|+..|-++... +..+......+...|....+...|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999987643333344443 33467789999999999887654 22367777888899999999999999997765
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 048616 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222 (272)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (272)
.. ++.|..+..-+...|-+.|+-..|.+.+-+--+ -++.+..+...|...|....-++++..+|++..- ++|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 566788899999999999999999988765443 3577888889999999999999999999998754 5999999
Q ss_pred HHHHH-HHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcccccCCC
Q 048616 223 FRRIK-ALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASDSFSC 272 (272)
Q Consensus 223 ~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~~ 272 (272)
|..++ .++.+.|++.+|.++|+...+.- ..|...+..+++-|..+|+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHHhccccc
Confidence 99854 55677899999999999987643 3556666677777888774
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.4e-10 Score=87.02 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
.|+|.+|+++..+-.+.+..| ...|..-..+.-+.||.+.+-+++.+..+..-.++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877776665443 3345555666677777777777777777653345555555666666777777777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (272)
++++.+.+.. +.........+|.+.|++.....++..+.+.+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 7777766554 455666777777777777777777777666543
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=4.4e-10 Score=85.63 Aligned_cols=234 Identities=10% Similarity=0.077 Sum_probs=156.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|-.-..+.-+.|+.+.+-.++.+..+....++....-+..+.....|+...|..-..++.+.+ +..+........+|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 34445556666778888888888888776445566667777778888888888888888888765 34677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNAT-------TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
.+.|++.....++..+.+.|.-.+.. +|..++.-....+..+.-...++..... .+-+...-..++.-+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 88888888888888888877654432 4555554444444444444455444332 233344445555555566
Q ss_pred CcHHHHHHHHHHHHHcCCCc------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 164 EKVEIALQLWNDMVEKGFGS------------------------------YILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
|+.++|.++..+..+++..| ++..+..|...|.+.+.+.+|.+.|+...+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666655554433222 335566777777777888888888876665
Q ss_pred cCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 214 KGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
. .|+..+|+.+..++.+.|+...|.+..++...
T Consensus 357 ~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 357 L--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred c--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 67777777777888888887777777777653
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.4e-11 Score=91.53 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=190.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 14 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
+.+-.+|.+.|.+.+|.+-|+..++. .|-+.||..|-+.|.+..+++.|+.++.+-.+. ++-+.....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66788999999999999999988876 457778888999999999999999999998875 333444445667778889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
++.++|.++++...+.... +......+...|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.++++-+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999887433 6666667778889999999999999999999965 7778888888888999999999988
Q ss_pred HHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 174 NDMVEKGFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
......--.|+ ...|-.+....+..|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88776533333 345666777778899999999999998876433 56788888888999999999999999987655
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.48 E-value=1.4e-10 Score=100.80 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhhC-CCCCCHh-hH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 048616 27 EKAYKIVEKMRDE-DISPDVI-SY----TSIIGGLGLVGQPDKARDVLKEMKEYGCY-PDAAAYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 27 ~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 99 (272)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7788888888754 1222221 11 11134456779999999999999987532 322 223357789999999999
Q ss_pred HHHHHHHHHcCCCC---CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC-----------CCC---HhhHHHHHHHHHh
Q 048616 100 SGLMDEMVEKGLSP---NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC-----------LPN---TQSCMFLVKLCKR 162 (272)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~ 162 (272)
+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999988753221 134456677788999999999999999876521 123 2245567778889
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-HHHHHHHHHHhhhHHHHHH
Q 048616 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-FRRIKALMELANKQEALQN 241 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~ 241 (272)
.|++++|+++++++.... +.+...+..+...+...|++++|++.+++..+. .|+... +...+..+...+++++|+.
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999998775 556788889999999999999999999999886 566544 4457778899999999999
Q ss_pred HHHHHHhcC
Q 048616 242 LSNKMALFG 250 (272)
Q Consensus 242 ~~~~~~~~~ 250 (272)
+++++.+..
T Consensus 449 ~~~~ll~~~ 457 (765)
T PRK10049 449 LTDDVVARE 457 (765)
T ss_pred HHHHHHHhC
Confidence 999999866
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.46 E-value=7.8e-10 Score=95.29 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
...+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44677778888888888888876544 5666667777778888888888888887765 34555554444444445555
Q ss_pred HHHHHHHHHHHHcC
Q 048616 97 RDASGLMDEMVEKG 110 (272)
Q Consensus 97 ~~a~~~~~~~~~~~ 110 (272)
.+|++.++++.+..
T Consensus 186 ~~AL~~~ekll~~~ 199 (822)
T PRK14574 186 YDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHHHhC
Confidence 55777777776653
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=1.3e-10 Score=93.94 Aligned_cols=238 Identities=18% Similarity=0.169 Sum_probs=175.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE-----DI-SPDV-ISYTSIIGGLGLVGQPDKARDVLKEMKEY-----G-- 75 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 75 (272)
..+...+...|...|+++.|+.++++..+. |. -|.. ...+.+...|...+++++|..+|+++..- |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667889999999999999999987654 21 1222 23344667888999999999999998742 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HhHHHHHHHHhhcCChhhHHHHHHHHHhC---C
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-----GLS-PNA-TTYNLFFRVFYWSNDLRSSWNLYCRMMGT---G 145 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 145 (272)
.+.-..+++.|..+|.+.|++++|...+++..+. |.. |.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223457788888999999999999998877642 221 122 23566778889999999999998876331 1
Q ss_pred CCCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC----C---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 048616 146 CLPN----TQSCMFLVKLCKRQEKVEIALQLWNDMVEKG----F---GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE- 213 (272)
Q Consensus 146 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 213 (272)
..++ ..+++.+...|.+.|++++|.++++...... . .-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3679999999999999999999999986531 1 12234567888899999999999999987543
Q ss_pred ---cCCC-Cc-HHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 214 ---KGHK-PS-QVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 214 ---~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.|.. |+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 22 2456669999999999999999988876
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=7.5e-10 Score=85.42 Aligned_cols=227 Identities=11% Similarity=-0.048 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHhhCCC-CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048616 24 RQVEKAYKIVEKMRDEDI-SP--DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (272)
+..+.++.-+.++..... .| ....|..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445677777777775321 22 24557778888899999999999999998864 346788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 101 GLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
..|++..+..+. +..+|..+..++...|++++|.+.+++..+.. |+..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999987543 46677788888889999999999999987763 433222222333456678999999997655432
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCC
Q 048616 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK---GH--KP-SQVSFRRIKALMELANKQEALQNLSNKMALFGPSMI 254 (272)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (272)
.++...+ .+. ....|+...+ +.+..+.+. .+ .| ....|..+...+...|+.++|...|++..+..+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~--- 267 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV--- 267 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---
Confidence 2332221 222 2345555444 344444422 11 11 234677788899999999999999999887652
Q ss_pred CCHHHHHH
Q 048616 255 PKREEYLA 262 (272)
Q Consensus 255 p~~~~~~~ 262 (272)
|+.+.+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 45554443
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=1.3e-09 Score=77.28 Aligned_cols=210 Identities=12% Similarity=0.009 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.+...|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++....... +....|..-..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 346667788999999999999999999874 346778889999999999999999999999987554 566778888889
Q ss_pred hhcCChhhHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 048616 126 YWSNDLRSSWNLYCRMMGTG-CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 204 (272)
|..|++++|...|++....- ..-...+|..+.-+..+.|+++.|...|++..+... ......-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 99999999999999887642 222346788888888899999999999999988763 3334556778888899999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 048616 205 EKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAE 263 (272)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 263 (272)
..+++.....+. ++..+.-..++.-...|+.+.+.++=..+.+.- |....+...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f----P~s~e~q~f 246 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF----PYSEEYQTF 246 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCcHHHHhH
Confidence 999999887765 788888888899999999999988877777644 766665544
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.8e-09 Score=83.37 Aligned_cols=212 Identities=13% Similarity=-0.062 Sum_probs=149.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+-..|...|++++|...|++..+..+. +...|+.+...+...|++++|...|++..+.. +-+..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356777788899999999999999999987543 78899999999999999999999999999864 2356788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
+...|++++|.+.|++..+..+ +..............+++++|...+.+..... .|+...+ .+.. ...|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH
Confidence 9999999999999999998743 33222222333456778999999997765432 3332222 2222 234554443
Q ss_pred HHHHHHHHHc---CC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-HHHHHH
Q 048616 170 LQLWNDMVEK---GF---GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALME 231 (272)
Q Consensus 170 ~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~ 231 (272)
+.+..+.+. .+ +.....|..+...+.+.|++++|...|++..+.+ +||..-+.. ++....
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALLELAL 282 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence 244444321 11 1123578889999999999999999999998764 235444443 444333
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=6.6e-09 Score=73.83 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=173.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+.-.|.-.|...|++..|..-+++.++.++. +..+|..+...|-+.|+.+.|.+-|++..+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34556777899999999999999999998654 77889999999999999999999999999874 34678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKG-LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
|..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999998762 22235678888888899999999999999998875 33445677788888899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (272)
..+++.....+. ++....-..|+.-...|+.+.+.++=..+... -|...-|..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 999999887764 77777777888888999999998887777664 566555544
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=2.1e-08 Score=83.93 Aligned_cols=256 Identities=13% Similarity=0.093 Sum_probs=156.2
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
+.|.+...-...+.....|++++|.+++.+..+..+. +...|..|...|-+.|+.+++...+--..... +.|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4444555555555555669999999999998887544 67778888888888888888777766555443 335566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC-------------------
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC------------------- 146 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 146 (272)
+.....+.|.+++|.-.|.+.++..+. +...+---...|-+.|+...|.+.|.++.....
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 666666666677777666666665432 333333344445555555555544444433211
Q ss_pred ---------------------CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH---------------------------
Q 048616 147 ---------------------LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE--------------------------- 178 (272)
Q Consensus 147 ---------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 178 (272)
..+...++.++..+.+...++.+.........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 11122233333333333333333333333222
Q ss_pred ----------------------------------cC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 048616 179 ----------------------------------KG--FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222 (272)
Q Consensus 179 ----------------------------------~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (272)
.+ +.-+...|.-+.++|.+.|++.+|.++|..+......-+...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11 111234556677888888999999999999987755556667
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Q 048616 223 FRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEM 264 (272)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll 264 (272)
|-.+...|...|..+.|.+.|++.+...+.......++.++.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY 493 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence 888899999999999999999998876533222234444443
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.3e-09 Score=83.96 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=176.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRD 98 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (272)
.+.-.|+...|.+-|+...+....++ ..|.-+..+|....+.++....|.+..+.+ +-++.+|..-..+..-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 34567889999999999988765533 337778889999999999999999998875 3467788878888888899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
|..=|++.+...+. +...|-.+.-+..+.+.+++++..|++.++. ++-....|+.....+..+++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999987543 5667777777778899999999999999776 566678999999999999999999999998876
Q ss_pred cCCC-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 179 KGFG-------SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 179 ~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.... +.+.+--.++-.- -.+++..|.+++++..+.+.+ ....|..|.+.-.+.|+.++|.++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4211 1111222222222 348999999999999887443 556788899999999999999999998653
No 56
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=1.2e-08 Score=88.05 Aligned_cols=198 Identities=11% Similarity=0.044 Sum_probs=158.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHhHHHHHHH
Q 048616 50 SIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKG-----LSPNATTYNLFFRV 124 (272)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 124 (272)
-.+-++...++..++++.|+.+...+.+....+-..+.++|...+++++|+.+++++.... ..++......|..+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 4556778889999999999999988877677788899999999999999999999997653 12234445778999
Q ss_pred HhhcCChhhHHHHHHHHHhCCC-------------CCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGC-------------LPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDV 190 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (272)
+...+++++|..+++.+.+... .||- ..+..++..+...|++.+|++.++++.... +-|..+...
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999999999999999976311 1222 234456677889999999999999998775 678888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF-RRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+.+.+...|.+.+|++.++..... .|+.... ......+...+++.+|..+.+.+.+..
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999777654 5655444 447888888999999999999888766
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.7e-10 Score=84.87 Aligned_cols=204 Identities=13% Similarity=0.064 Sum_probs=171.3
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
.|-+.||-.|-..|.+-.+++.|+.+|.+-.+. .+-++....-+.+.+-..++.++|.++++...+.. +.+.+....+
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAci 330 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACI 330 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeee
Confidence 467789999999999999999999999998875 33355445556778888999999999999998763 4566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcC
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT--QSCMFLVKLCKRQE 164 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 164 (272)
...|.-.++.+-|+..++++.+.|+. +...|+.+.-+|.-.++++-++..|++....-..|+. .+|..+-......|
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 78888889999999999999999987 8889999999999999999999999988765444443 46777878888999
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
++..|.+.|+-...++ ..+...++.|.-.-.+.|++++|..++......
T Consensus 410 D~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred chHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999988776 455677888888888999999999999988765
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=7e-09 Score=84.08 Aligned_cols=228 Identities=19% Similarity=0.185 Sum_probs=161.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEY-----G-CYPDAA-AYNAAIRNYCIAKRLRDASGLMDEMVEK-----GL 111 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 111 (272)
-..+...+...|...|+++.|+.++++..+. | ..|... ..+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677899999999999999999988754 2 123333 3345778899999999999999998743 32
Q ss_pred C-C-CHHhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCC-CCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHc---
Q 048616 112 S-P-NATTYNLFFRVFYWSNDLRSSWNLYCRMMG-----TGC-LPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEK--- 179 (272)
Q Consensus 112 ~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 179 (272)
. | -..+++.|..+|.+.|++++|...+++..+ .+. .|.. ..++.+...++..+.+++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2 1 234677777889999999999888877633 121 1222 23666777888999999999999876543
Q ss_pred CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHH-
Q 048616 180 GFGS----YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG----H--KP-SQVSFRRIKALMELANKQEALQNLSNKMA- 247 (272)
Q Consensus 180 ~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 247 (272)
-+.+ -..+++.|...|...|++++|.+++++.+... - .+ ....++.+...|.+.+..++|.++|.+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1222 23678999999999999999999999987541 1 22 23456678999999999998988888754
Q ss_pred ---hcCCCCCCCHHHHHHhhcccccCC
Q 048616 248 ---LFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 248 ---~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
..|+.......+|..|...+.+.|
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 344332223356666665555544
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=5.3e-08 Score=79.82 Aligned_cols=229 Identities=16% Similarity=0.145 Sum_probs=153.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhc--
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN-AAIRNYCIA-- 93 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-- 93 (272)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+++ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567789999999988775543 44345566777888888899999999999998875 4555444 444444221
Q ss_pred ---CCHHHHHHHHHHHHHcCCCC-----------C--------------------HHhHHHHHHHHhhcCChhhHHHHHH
Q 048616 94 ---KRLRDASGLMDEMVEKGLSP-----------N--------------------ATTYNLFFRVFYWSNDLRSSWNLYC 139 (272)
Q Consensus 94 ---~~~~~a~~~~~~~~~~~~~~-----------~--------------------~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (272)
.+.+...++++++...-+.. + +.+|+.+-..|.......-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 24566667777665432110 0 1123333333443333333444444
Q ss_pred HHHhC----C----------CCCCH--hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 140 RMMGT----G----------CLPNT--QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 140 ~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
..... + -+|+. .++..+...|...|++++|.++++...++. +..+..|..-.+.+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 43221 1 12333 345666778889999999999999999885 3346788888899999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 204 AEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
|.+.++..+..+.. |...-+..+..+.++|+.++|.+++..+.+.+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999886433 44444448889999999999999999987665
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.24 E-value=6.8e-08 Score=78.64 Aligned_cols=246 Identities=13% Similarity=0.094 Sum_probs=161.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+|+.-.+.|.+.+.++-|..+|...++-- +-+...|......--..|..++...+|++.... ++-....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 355555566666666666777776666542 335556666666555667777777777777765 334455555556666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
-..|+...|..++.+..+.+.. +...|...+.....+.+++.|..+|.+.... .|+...|.--+..---.++.++|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 6778888888888888777543 6677777777888888888888888777654 566666666555555667788888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-....|..+...=.+.|..-.|..++++..-++
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 888777665 2334456667777777777777777777665544 33344556666666667777777777777766555
Q ss_pred CCCCCCHHHHHHhhcc
Q 048616 251 PSMIPKREEYLAEMSA 266 (272)
Q Consensus 251 ~~~~p~~~~~~~ll~a 266 (272)
+ -+..-|...|..
T Consensus 750 P---k~~~lwle~Ir~ 762 (913)
T KOG0495|consen 750 P---KNALLWLESIRM 762 (913)
T ss_pred C---CcchhHHHHHHH
Confidence 2 233444444443
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.8e-08 Score=85.03 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=175.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS--PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA--AAYN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 84 (272)
|+...+.|.+.|.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|...|.+..+.. ++. -.+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence 6677888999999999999999999988765321 123457889999999999999999999888753 343 3445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC----ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN----DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
-+..++.+.|+++.+...|+......+ .+..+..+|...|...+ ..++|..++.+..+.. +-|...|..+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 678899999999999999999988743 25667767766666664 4566777777766553 45667777777777
Q ss_pred HhcCcHHHHHHHHHHHH----HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcHH-------hHHHH
Q 048616 161 KRQEKVEIALQLWNDMV----EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK---GHKPSQV-------SFRRI 226 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~-------~~~~l 226 (272)
...+ ...+..++.... ..+..+.+...|.+.......|++++|...|+..... ...+|.. -|| +
T Consensus 425 e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-l 502 (1018)
T KOG2002|consen 425 EQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-L 502 (1018)
T ss_pred HhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-H
Confidence 5544 333366665543 4454566788899999999999999999999988765 2334442 233 6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 227 KALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.......++.+.|.+.|+.+.+..
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC
Confidence 777778889999999999998876
No 62
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1.7e-11 Score=61.02 Aligned_cols=34 Identities=44% Similarity=0.974 Sum_probs=30.5
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 048616 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMR 37 (272)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 37 (272)
+|++||..+||++|++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5889999999999999999999999999998874
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-08 Score=79.27 Aligned_cols=206 Identities=10% Similarity=0.061 Sum_probs=162.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG 101 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (272)
..|++++|.+.|++.+..+-.-....|++ .-.+-..|++++|++.|-++... +..+..+...+.+.|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 46899999999999987644433334443 33466789999999999988754 23577888888999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048616 102 LMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181 (272)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (272)
++.+.... ++.|+...+.|...|-+.|+-..|++.+-.--+. ++-+..+..-+...|....-+++++.+|+...- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99887665 4557888999999999999999999887654433 466778888888888899999999999988654 4
Q ss_pred CccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh
Q 048616 182 GSYILVSDVLFDL-LCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234 (272)
Q Consensus 182 ~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (272)
.|+..-|..++.. +.+.|++.+|.++++....+ ++-|.....-|++.+...|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 8999999887765 55789999999999998776 5667777777777765544
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.9e-08 Score=79.16 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=158.9
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
|..-+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .+..+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 445556666666666666777777777777666543 334444444455555555555555555555543 233445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH----------------------------------HHhhcCC
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR----------------------------------VFYWSND 130 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~ 130 (272)
++.--|.-.|..++|.+.|.+....... =...|-.+.. -|.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 5555555555555555555554432111 0112222222 3455666
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHhcCCHHHH
Q 048616 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK------GFGSYILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a 204 (272)
.+.|.+.|.+.... .+.|+...+-+--..-..+.+.+|...|+..... .......+++.|..++.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 66666666665543 2344555555555555677888888888876622 1112456788899999999999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcc
Q 048616 205 EKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSA 266 (272)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~a 266 (272)
...++..+... +.|..++.++.-.|...|+.+.|.+.|.+... +.|+..+...+|.-
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHH
Confidence 99999998773 44788888899999999999999999999764 44887666665543
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.20 E-value=1.4e-07 Score=76.88 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=154.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|-.....+-..|++..|..++.+..+.... +...|-.-+..-....+++.|..+|.+.... .|+..+|..-++.
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL 660 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH
Confidence 344555555566678888888888888776544 7777888888888888888888888887764 4677777776666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
---.+..++|.+++++.++. .|+ ...|..+-+.+-+.++.+.|.+.|..=.+. ++-....|..+.+.=.+.|.+-.
T Consensus 661 er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhh
Confidence 66678888888888777765 334 334555556666777777777666543332 23334455555555566677777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCCCc
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK-----------------------------GHKPS 219 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~p~ 219 (272)
|..+++..+-.+ +-+...|-..|+.=.+.|+.+.|..++.+.++. .+.-|
T Consensus 738 AR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 738 ARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 777777766665 445566777777777777777776665544432 12333
Q ss_pred HHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 220 QVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
......+...+-....++++.+.|.+....+
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444455566666677777777777766544
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.9e-07 Score=75.61 Aligned_cols=235 Identities=14% Similarity=0.135 Sum_probs=163.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCC---C---
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV-----GQPDKARDVLKEMKEYGCY---P--- 78 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~---~--- 78 (272)
..........+.+.|+.++|..+|..+.+.++. |..-|..+..+..-. .+.+...++++++.+.-.. |
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 455677778899999999999999999998632 444444455554222 2456666777766433110 0
Q ss_pred -------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----------CCCCH--Hh
Q 048616 79 -------------------------DAAAYNAAIRNYCIAKRLRDASGLMDEMVEK----G----------LSPNA--TT 117 (272)
Q Consensus 79 -------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~ 117 (272)
-+.+|+.+-..|......+-..+++...... + -.|+. .+
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT 196 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence 1134444545555444444445555554422 1 12333 34
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 048616 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC 196 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (272)
+..+...|...|++++|++.+++.++. .|+ ...|..-.+.+-+.|++++|.+.++..+..+ .-|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 466678888999999999999999887 455 6778888899999999999999999999887 557777778889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHh------H-HH-HHHHHHHhhhHHHHHHHHHHHHh
Q 048616 197 DMGKLVEAEKSFLEMIEKGHKPSQVS------F-RR-IKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~------~-~~-l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
+.|++++|.+++......+..|-... | .. ...+|.+.|++..|...|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999977765443322 2 22 57788999998888876666544
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=4.1e-09 Score=80.42 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=147.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA-AAYNAAIR 88 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 88 (272)
......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-+++.......++. ........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334555667788888876543 4444433 566666655555444434555555555444433323222 33333345
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hcC
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK----RQE 164 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 164 (272)
.+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 566789999999888653 266777788899999999999999999998753 33 34444444443 334
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhH-HHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQ-EALQNLS 243 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~ 243 (272)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 789999999998765 4678888899999999999999999999998765432 445555577777777776 7788899
Q ss_pred HHHHhcC
Q 048616 244 NKMALFG 250 (272)
Q Consensus 244 ~~~~~~~ 250 (272)
.+++...
T Consensus 260 ~qL~~~~ 266 (290)
T PF04733_consen 260 SQLKQSN 266 (290)
T ss_dssp HHCHHHT
T ss_pred HHHHHhC
Confidence 9888765
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.13 E-value=5.1e-08 Score=82.43 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=126.4
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCH------hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE---DISPDV------ISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
.|-.+-+...|.+...+...|+++.|...|+..... ...++. .+--.+....-..++.+.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 444567788888888888899999999999887654 122222 12222444445556666666666666654
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC------------------------
Q 048616 75 GCYPD-AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN------------------------ 129 (272)
Q Consensus 75 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------ 129 (272)
. |+ ...|-.++.+....+...+|...+.+..+..- .++..++.+...+....
T Consensus 526 h--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 526 H--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred C--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 2 22 22222222222233445555555555443321 12222222222333333
Q ss_pred ------------------------ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 048616 130 ------------------------DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI 185 (272)
Q Consensus 130 ------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (272)
..++|+++|.+..+.. +-|...-+-+.-.++..|++.+|..+|.++.+... -..
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCC
Confidence 3445555555555443 33445555555555666666666666666665531 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH-KPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.+|-.+..+|...|++..|.++|+...+.-. .-+....+.|.+++-..|.+.++.+.......
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566666666666666666665544422 22333344466666666666666665555544
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.6e-08 Score=78.27 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
|-.+..+|....+.++....|+...+.+.. ++.+|..-.....-.+++++|..=|++..+.. +-+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 777778899999999999999999987655 77788888888888999999999999999864 2356677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC-----CCH--hhHHHHHHHHHhcCc
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL-----PNT--QSCMFLVKLCKRQEK 165 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~~~ 165 (272)
.+.++++...|++..+. ++..+..|+.....+...+++++|.+.|+..++.... .+. .+--.++ .+.-.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhh
Confidence 99999999999999987 4446788999999999999999999999988764211 011 1111111 1123489
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+..|.++++...+.+.+ ....|..|...-.+.|+.++|.++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999988744 447888999999999999999999998754
No 70
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=1e-06 Score=68.33 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=167.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
.+++.+-..+...++.++|+.+.+++.+.++. +..+|+..-.++...| ++++++..++++.+... .+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 35566666777789999999999999987543 5667777777777777 67999999999998753 355667766555
Q ss_pred HHhcCCH--HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---C
Q 048616 90 YCIAKRL--RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ---E 164 (272)
Q Consensus 90 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 164 (272)
+.+.|+. ++++.+++++.+...+ +..+|+...-++...|+++++++.++++.+.+.. +...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 6666653 6788999999988665 7889999888999999999999999999887643 556666665555444 2
Q ss_pred c----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh--
Q 048616 165 K----VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM----GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN-- 234 (272)
Q Consensus 165 ~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-- 234 (272)
. .++...+..+..... +-+...|+-+...+... ++..+|.+.+.+..+.++ .+......|+..|....
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhcc
Confidence 2 245677776766665 55677888777777763 445678888888766432 24555666888887532
Q ss_pred ----------------hHHHHHHHHHHHH
Q 048616 235 ----------------KQEALQNLSNKMA 247 (272)
Q Consensus 235 ----------------~~~~a~~~~~~~~ 247 (272)
..++|.+++..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2366888888874
No 71
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.09 E-value=3.2e-07 Score=80.55 Aligned_cols=232 Identities=13% Similarity=0.154 Sum_probs=173.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD-----VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAY 83 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (272)
+...|-..|......++.+.|.+++++.+.. +.+. ...|.++++.-..-|.-+...++|+++.+.. ..-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888888888999999999999988764 3222 3457777777777788888899999998752 234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN---TQSCMFLVKLC 160 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 160 (272)
..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 788889999999999999999998762 236777888888999998889999999887664 333 23334444444
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH--hHHHHHHHHHHhhhHHH
Q 048616 161 KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV--SFRRIKALMELANKQEA 238 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 238 (272)
.+.|+.+.+..+|+...... +--...|+.+++.=.++|+.+.+..+|++.+..++.|-.. .|..-+..=...|+...
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 68899999999999888765 3345789999999999999999999999999887766443 34445666666677666
Q ss_pred HHHHHHHHH
Q 048616 239 LQNLSNKMA 247 (272)
Q Consensus 239 a~~~~~~~~ 247 (272)
++.+=.+..
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 665544443
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=3.5e-08 Score=75.37 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=137.7
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISP-DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
.|.......+...+...++-+.+..-+++.......+ +..........+...|++++|++++.+- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 5666666555554444355666666665554443332 2322333334566789999999888653 36677778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
.+..+.+.++++.|.+.++.|.+.+ .|. +...+..+++. .+.+.+|..+|+++.+. ..++..+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8999999999999999999998763 343 34445554443 34689999999998665 5788889999999999
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCc
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL-VEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~p~ 219 (272)
..|++++|.+++.+....+ +-+..+...++-+....|+. +.+.+++.++... .|+
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 9999999999999988765 44566666677777788887 6788888888765 454
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=9.8e-07 Score=68.34 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH-
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL- 172 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 172 (272)
+++..|+.+-++.++.... +...+-.-...+...+++++|.-.|+...... +-+...|.-++.+|...|.+.+|...
T Consensus 314 K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3444444444444433211 22233222344555566666666666554442 23455666666666666666555433
Q ss_pred -----------------------------------HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 173 -----------------------------------WNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217 (272)
Q Consensus 173 -----------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (272)
++.-.+.. +......+.+.+.+...|..+++..+++..... .
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~ 468 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--F 468 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--c
Confidence 33322221 112334566778888999999999999998775 7
Q ss_pred CcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 218 PSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
||....+.|.+.+...+.+.++.+.|....+..
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 899989999999999999999999999887655
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.08 E-value=3.8e-07 Score=76.74 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=157.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA----YN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 84 (272)
|...|-.+-....+.|++++|.-.|.+..+.. +++...+-.-...|-+.|+...|.+.|.++.+...+.|..- -.
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 45566666666666666666666666666653 22444444455566666777777777777666532222222 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh--------------------
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEK-GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG-------------------- 143 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 143 (272)
..++.+...++-+.|.+.++..... +-..+...+++++..+.+...++.+......+..
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 2344455555556666666555542 1112344566677777777777777666655433
Q ss_pred -----------------------------------------CCCC--CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 144 -----------------------------------------TGCL--PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 144 -----------------------------------------~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
..+. -+...|.-+..++...|++.+|..++..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1111 122346667788899999999999999999876
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH-HHHHHHHHhhhHHHHHHHHHHHH
Q 048616 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
..-+...|-.+..+|...|..++|.+.++..+.. .|+..-.. +|...+.+.|+.++|.+.+..+.
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5666789999999999999999999999999875 55544444 48999999999999999998865
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6e-07 Score=71.95 Aligned_cols=207 Identities=12% Similarity=0.016 Sum_probs=150.1
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048616 40 DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
+..-+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+. ...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchh
Confidence 344467777777788888999999999999999863 566777777788999999999888888888887443 678898
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH----------------------------------HHhcCc
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL----------------------------------CKRQEK 165 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------------~~~~~~ 165 (272)
++.--|...|...+|.+.|.+....+.. -...|..+..+ |.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 8888888889999999999876443211 11122222222 445667
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----CcHHhHHHHHHHHHHhhhHHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK--GHK----PSQVSFRRIKALMELANKQEAL 239 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~~~~~~a 239 (272)
++.|.++|.+..... +.|+...+-+.-..-..+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+..++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 777777777666543 445555666665566778899999999877622 011 1334567789999999999999
Q ss_pred HHHHHHHHhcC
Q 048616 240 QNLSNKMALFG 250 (272)
Q Consensus 240 ~~~~~~~~~~~ 250 (272)
...+++.+...
T Consensus 475 I~~~q~aL~l~ 485 (611)
T KOG1173|consen 475 IDYYQKALLLS 485 (611)
T ss_pred HHHHHHHHHcC
Confidence 99999988765
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.04 E-value=1.6e-08 Score=84.73 Aligned_cols=208 Identities=13% Similarity=0.083 Sum_probs=140.1
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 31 KIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKG 110 (272)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (272)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788999999999999999999999999998 9999988778888999999999999999988877
Q ss_pred CCCCHHhHHHHHHHHhhcCChhh---HHHHHHHH----HhCCCCCCHhhH--------------HHHHHHHHhcCcHHHH
Q 048616 111 LSPNATTYNLFFRVFYWSNDLRS---SWNLYCRM----MGTGCLPNTQSC--------------MFLVKLCKRQEKVEIA 169 (272)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 169 (272)
.|.+.||..|..+|.+.||... ..+.+... ...|+.....-+ ...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998755 22212221 122322111111 1222233344555555
Q ss_pred HHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 170 LQLWNDMVEKG-FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.+++..+.... ..|. ..+++-+... ..-..++........-.|+..+|..++.....+|+.+.|..++.+|++
T Consensus 159 lkll~~~Pvsa~~~p~----~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPF----QVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchH----HHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554433221 0111 1123322222 222333333332222258999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 048616 249 FGPSMIPK 256 (272)
Q Consensus 249 ~~~~~~p~ 256 (272)
.|..++|-
T Consensus 233 ~gfpir~H 240 (1088)
T KOG4318|consen 233 KGFPIRAH 240 (1088)
T ss_pred cCCCcccc
Confidence 99876553
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.2e-06 Score=69.87 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=136.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL----VGQPDKARDVLKEMKEYGCYPD-AAAYNAAIRNYCI 92 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 92 (272)
..+...|++++|.+.+++..+..+. +...+.. ...+.. .+..+.+.+.+... ....|+ ......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHH
Confidence 3456678999999999888776322 4434432 222222 34444555544441 112233 3344456667888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC-CCCH--hhHHHHHHHHHhcCcHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC-LPNT--QSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a 169 (272)
.|++++|...+++..+..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999887543 566777888889999999999999988766432 1222 2345677788899999999
Q ss_pred HHHHHHHHHcCC-CccHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHHH
Q 048616 170 LQLWNDMVEKGF-GSYILVS-D--VLFDLLCDMGKLVEAEKS--FLEMIEKGHKPSQVSFR--RIKALMELANKQEALQN 241 (272)
Q Consensus 170 ~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 241 (272)
..++++...... .+..... + .++.-+...|..+.+.++ +..............+. ....++...|+.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999988754432 1211111 1 233334444544433333 21111111111112222 35667777888899999
Q ss_pred HHHHHHhcC
Q 048616 242 LSNKMALFG 250 (272)
Q Consensus 242 ~~~~~~~~~ 250 (272)
+++.+....
T Consensus 286 ~L~~l~~~~ 294 (355)
T cd05804 286 LLAALKGRA 294 (355)
T ss_pred HHHHHHHHH
Confidence 988886643
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=3.7e-07 Score=80.19 Aligned_cols=214 Identities=9% Similarity=0.014 Sum_probs=170.5
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 33 VEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP-----DAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
|+++.... +-+...|...|....+.++.++|.+++++.... +.+ -...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444433 335677999999999999999999999998754 222 12467778887777888899999999998
Q ss_pred HcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-ccHH
Q 048616 108 EKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG-SYIL 186 (272)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 186 (272)
+.. . ....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.-.+ -...
T Consensus 1525 qyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 862 1 3456788999999999999999999999775 3457788999999999999999999999998876322 1334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPS 252 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (272)
...-.+..-.+.|+.+.+..+|+..+..- +.-...|+..+..-.++++.+.++.+|++....++.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 44555566668999999999999998763 335678999999999999999999999999998865
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=3e-07 Score=68.78 Aligned_cols=187 Identities=11% Similarity=0.017 Sum_probs=106.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS-P-DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA--AAYN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 84 (272)
+...+-.+...+...|+++.|...|+++...... | ...++..+..++.+.|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555556666666666666666666554221 1 1134455566666666666666666666654211111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 85 AAIRNYCIA--------KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 85 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
.+..++... |+.++|.+.|+.+....+. +...+..+.... . ... .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~-~---~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD-Y---LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH-H---HHH------HH--------HHHHHHH
Confidence 334444433 5566666666666655222 111221111100 0 000 00 0011245
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEKGF--GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
...+.+.|++++|...+....+... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678899999999999999887632 234567888999999999999999999988764
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.99 E-value=7.7e-10 Score=54.97 Aligned_cols=32 Identities=50% Similarity=0.916 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 75 GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEM 106 (272)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (272)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=4.4e-07 Score=67.92 Aligned_cols=186 Identities=11% Similarity=0.016 Sum_probs=125.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD---AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA--TTY 118 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 118 (272)
....+..+...+.+.|++++|...|+++.+... .+ ...+..+..++.+.|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 456677788888899999999999999887531 12 246677888899999999999999999876432111 134
Q ss_pred HHHHHHHhhc--------CChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 048616 119 NLFFRVFYWS--------NDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSD 189 (272)
Q Consensus 119 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (272)
..+..++.+. |++++|.+.++.+.... |+. .....+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444455443 67788888888887652 332 22222211110 000 000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 190 VLFDLLCDMGKLVEAEKSFLEMIEKGH-KP-SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+...+.+.|++++|...++...+... .| ....+..+..++...|+.++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456678999999999999999987622 12 34577789999999999999999999887654
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=2.9e-06 Score=67.65 Aligned_cols=226 Identities=9% Similarity=-0.033 Sum_probs=140.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
.+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 93 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 455556666555421 1122233444556678889999999999999999875 34567788889999999999999999
Q ss_pred HHHHHHcCCC-CCH--HhHHHHHHHHhhcCChhhHHHHHHHHHhCCC-CCCHhhH-H--HHHHHHHhcCcHHHHHHH---
Q 048616 103 MDEMVEKGLS-PNA--TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC-LPNTQSC-M--FLVKLCKRQEKVEIALQL--- 172 (272)
Q Consensus 103 ~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--- 172 (272)
+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|....+.+.
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 9998875322 222 3455678889999999999999999854422 1222211 1 223333344433322222
Q ss_pred HHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--c------HHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 173 WNDMVEKGF-GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP--S------QVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
......... ............++...|+.++|...++.+......+ . .........++...|+.++|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 111111100 1111222356777889999999999999886642220 1 111111234556789999999988
Q ss_pred HHHHhcC
Q 048616 244 NKMALFG 250 (272)
Q Consensus 244 ~~~~~~~ 250 (272)
.......
T Consensus 331 ~~al~~a 337 (355)
T cd05804 331 GPVRDDL 337 (355)
T ss_pred HHHHHHH
Confidence 8876543
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=1.3e-06 Score=63.23 Aligned_cols=119 Identities=8% Similarity=0.113 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCc--HHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC-KRQEK--VEIA 169 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (272)
.++.+++...++...+.++. +...|..+...|...|++++|...|++..+.+ +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45555666666665555433 56666666666666666666666666666553 23445555555543 44454 3666
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67776666654 334455566666666677777777777776655
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.2e-06 Score=63.39 Aligned_cols=156 Identities=11% Similarity=0.137 Sum_probs=120.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
+-.|...|+++.+....+.+... . ..+...++.+++...+++..+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 44688899998876555333211 1 01223667788888888887764 56888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHH-hhcCC--hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVF-YWSND--LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
++|...|++....... +...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988654 677777777764 67777 599999999998875 446778888889999999999999999
Q ss_pred HHHHHcCCCccHHHH
Q 048616 174 NDMVEKGFGSYILVS 188 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~ 188 (272)
+.+.+.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998876 4454433
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=4e-07 Score=73.05 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=171.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRD 98 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (272)
-+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356889999999999999888654 88899999999999999999999999999874 3467788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHH-----------HHHhhcCChhhHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFF-----------RVFYWSNDLRSSWNLYCRM-MGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
|++.++.-+...++ |..+. ..+..........++|-++ ...+..+|..+...|--.|--.|.+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999887654321 00000 1112222334455555555 4445457888888888888889999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-HHHHHHHHHHhhhHHHHHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-FRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
++|...|+..+... +.|..+||.|.-.++...+.++|...|.+.++. +|+-+- ...|.-.|...|.+++|...|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998875 667789999999999999999999999999885 665442 22378889999999999988877
Q ss_pred HHhc
Q 048616 246 MALF 249 (272)
Q Consensus 246 ~~~~ 249 (272)
.+..
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 6543
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=5.6e-07 Score=65.44 Aligned_cols=164 Identities=15% Similarity=0.047 Sum_probs=132.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
|... ..+-..+...|+-+....+..+.... .+.|.......+....+.|++..|...+++...... +|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 55667778888888888888776543 245667777789999999999999999999987754 58999999999
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
+|.+.|+++.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+ .-+..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999887763 3456678888888889999999999999988775 4455666777788889999999
Q ss_pred HHHHHHHHH
Q 048616 204 AEKSFLEMI 212 (272)
Q Consensus 204 a~~~~~~~~ 212 (272)
|.++...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 998876543
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=5.9e-07 Score=74.07 Aligned_cols=222 Identities=13% Similarity=0.033 Sum_probs=135.6
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+|=-..=..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333334455566777788888888877653 4666777888888888888877777763 5777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|...-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 77666655566676666654432 11111122233566667766666554443 33455666666666666777
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|.........-|.++.|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77666666555432 3344567777777777777777777777776654 223334444455556666667676666666
Q ss_pred Hhc
Q 048616 247 ALF 249 (272)
Q Consensus 247 ~~~ 249 (272)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 543
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.1e-06 Score=65.27 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=124.9
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (272)
|...|+.--..-+.+.+..+.+..+++.|++++..-.++..+ +....+.+..+|....++..|-..++++... .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 445666666666888888889999999999999888777533 7778899999999999999999999999875 3555
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 048616 81 AAYNAA-IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF--RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157 (272)
Q Consensus 81 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (272)
.-|... ...+.+.+.+..|+++...|.+. |+...-..-+ ......+++..+..++++....| +..+.....
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 555422 35566778888899888877653 1211111111 12233455555555555543322 122222222
Q ss_pred HHHHhcCcHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 158 KLCKRQEKVEIALQLWNDMVEK-GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
....+.|+.+.|.+-|+...+- |..| ...|+.-+. ..+.|+++.|++...++++.|
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERG 208 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhh
Confidence 2233556666666666555544 3333 244444332 234555666666666655554
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=4.4e-06 Score=60.92 Aligned_cols=163 Identities=7% Similarity=0.002 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
|... ..+-..+...|+-+....+.........+ +.......+....+.|++..|...+++..... ++|..+|+.+--
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 66677788889999998888887655333 66667778999999999999999999998775 789999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
+|.+.|+++.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 9999999999999999998875 334566788888899999999999999999876433 55555568888999999999
Q ss_pred HHHHHHHH
Q 048616 239 LQNLSNKM 246 (272)
Q Consensus 239 a~~~~~~~ 246 (272)
|..+...-
T Consensus 221 A~~i~~~e 228 (257)
T COG5010 221 AEDIAVQE 228 (257)
T ss_pred HHhhcccc
Confidence 99877653
No 90
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.7e-05 Score=62.87 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
|-.-+.+-.++..+..|..+|++....=+. -...|--.+..=-..|++..|.++|++-.+ ..|+...|.+.+..-.+
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 333333444444444444444444432111 112233333333344555555555555544 24566666666665556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT-G-CLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
.+.++.|..++++.+-. .|+..+|--....-.+.|+...+..+|+...+. | -..+...+.++..-=.++..++.|.
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555543 245555555555555556666666666555432 1 0111122222222223444555566
Q ss_pred HHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHH
Q 048616 171 QLWNDMVEKGFGSY--ILVSDVLFDLLCDMGKLVEAEKS--------FLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240 (272)
Q Consensus 171 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~--------~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (272)
-+|+-..++- +.+ ...|..+...=-+-|+.....+. ++.+++.+ +-|-.+|--.+..-...|+.+...
T Consensus 265 ~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 265 FIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHH
Confidence 6665555442 222 23344443333344443333322 22333332 335556666777777788889999
Q ss_pred HHHHHHHhcC
Q 048616 241 NLSNKMALFG 250 (272)
Q Consensus 241 ~~~~~~~~~~ 250 (272)
++|++.+...
T Consensus 343 e~yErAIanv 352 (677)
T KOG1915|consen 343 ETYERAIANV 352 (677)
T ss_pred HHHHHHHccC
Confidence 9999887644
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=5.3e-07 Score=61.75 Aligned_cols=95 Identities=7% Similarity=-0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
+..+...+...|++++|...|++..... +.+...|..+..++.+.|++++|...|++....... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445566666777777777777766653 335666666677777777777777777777765432 55666666666777
Q ss_pred cCChhhHHHHHHHHHhC
Q 048616 128 SNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (272)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766554
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=1.7e-06 Score=59.24 Aligned_cols=91 Identities=11% Similarity=-0.065 Sum_probs=45.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK 200 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (272)
+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....+ +.+...+..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444455555555555555554442 2344444555555555555555555555555443 3344444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 048616 201 LVEAEKSFLEMIE 213 (272)
Q Consensus 201 ~~~a~~~~~~~~~ 213 (272)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=4.8e-06 Score=71.15 Aligned_cols=136 Identities=9% Similarity=0.003 Sum_probs=101.3
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048616 41 ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL 120 (272)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (272)
.+.+...+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 44457777777788888888888888888888753 223556667777888888888888888888877543 5666677
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7778888888888888888887642 334677777888888888888888888887655
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.9e-05 Score=57.46 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNAT-TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
.++-+....|+.+.|...++++.+.- |.+. .-..-...+-..|++++|+++++.+.+.+ +.|..++-.-+...-..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444444555555555555555441 2211 11111112333455555555555555543 33444444444444444
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 164 EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
|+--+|++-+....+. +..|...|.-+.+.|...|++++|.-.+++++-
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5444555554444433 344555555555555555555555555555544
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=7e-06 Score=70.17 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=120.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
...+...+..|.....+.|+.++|+.+++...+..+. +......+...+.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888999999999999999999999999987443 56677788899999999999999999998774 335566777
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (272)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+. ..|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 7788899999999999999999844 445678888899999999999999999999876 2334455443
No 96
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=3.9e-05 Score=60.87 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
...|+...|++.|+.-.+-..++.|..+|++..-- -|+..+|....+.=-+.|....|..+|+...+
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35799999999999999999999999999988764 37787887777777777777777777766543
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=6.8e-07 Score=73.72 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=143.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|.-+|.+|...|+..+|..+..+..++ +|++..|..+.+......-+++|.++.+....+ .-..+...
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccc
Confidence 456888999999999999999999888773 678888998888877777778888887766432 22222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
..+.++++++.+.|+.-.+.+.- ...+|-.+-.+..+.++++.|.+.|....... +-+...|+.+-.+|.+.++..+|
T Consensus 495 ~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHH
Confidence 34468888888888877766432 56677777777788888888888888776652 33456788888888888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
...+.+..+.+ .-+...|...+-.....|.+++|.+.+.++.+
T Consensus 573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888888777 44456666677777788888888888887754
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=2.4e-05 Score=67.97 Aligned_cols=218 Identities=10% Similarity=0.082 Sum_probs=147.2
Q ss_pred CCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH-----------------
Q 048616 6 VKP-DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDV----------------- 67 (272)
Q Consensus 6 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----------------- 67 (272)
+.| +...|..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++...+..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 444 5678999999999999999999999977765322 333344444456666665555444
Q ss_pred -HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 048616 68 -LKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (272)
...+... .-+...+..+..+|-+.|+.++|..+|+++++..+. |..+.|.+...|... +.++|.+++.+....-
T Consensus 105 ~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~- 179 (906)
T PRK14720 105 ICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF- 179 (906)
T ss_pred HHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-
Confidence 2222221 123356777888899999999999999999998744 788899999999999 9999999998875531
Q ss_pred CCCHhhHHHHHH----HH-HhcCcHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 147 LPNTQSCMFLVK----LC-KRQEKVEIALQLWNDMVEK-GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 147 ~~~~~~~~~l~~----~~-~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.+..-|+.+.. .| ....+++.-.++.+.+... +..--..++-.+-..|...++++++..+++.+.+...+ |.
T Consensus 180 -i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~ 257 (906)
T PRK14720 180 -IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NN 257 (906)
T ss_pred -HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-ch
Confidence 11111222211 11 1234555555666665544 44444566677778888999999999999999987433 44
Q ss_pred HhHHHHHHHHH
Q 048616 221 VSFRRIKALME 231 (272)
Q Consensus 221 ~~~~~l~~~~~ 231 (272)
....-++..|.
T Consensus 258 ~a~~~l~~~y~ 268 (906)
T PRK14720 258 KAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHH
Confidence 55555777776
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=1.8e-06 Score=58.51 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.....+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344445555666666666666666665543 235555666666666666666666666666555322 445555555566
Q ss_pred hhcCChhhHHHHHHHHHhC
Q 048616 126 YWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (272)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 100
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=4.1e-05 Score=59.59 Aligned_cols=198 Identities=8% Similarity=0.020 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK-RLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
+..+-..+...+..++|+.+..++.+.. +-+..+|+.-..++...| ++++++..++++.+.+.+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 4444455566788999999999999864 234456666666666777 679999999999988665 6667776655556
Q ss_pred hcCCh--hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCH
Q 048616 127 WSNDL--RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM---GKL 201 (272)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 201 (272)
+.+.. +++..+++++.+.+ +-+..+|.....++.+.|+++++++.++++.+.++ .+...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 66653 67888998888775 44778898888889999999999999999998874 4556676665555444 222
Q ss_pred ----HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHh----hhHHHHHHHHHHHHhcC
Q 048616 202 ----VEAEKSFLEMIEKGHKPSQVSFRRIKALMELA----NKQEALQNLSNKMALFG 250 (272)
Q Consensus 202 ----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~ 250 (272)
++..++..+++.... -|...|+-+...+... +...++..++.+....+
T Consensus 196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 467777777777633 3667777776666652 33456777777765533
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.3e-05 Score=57.46 Aligned_cols=221 Identities=12% Similarity=0.075 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR-DVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
.+-++|...|.+.....- +.... .|.......+-.....-++.++-+ ++.+.+.......+......-...|+..
T Consensus 46 y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 344566666765444332 22222 333444443333333344433333 3344444443333434444445567788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hcCcHHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK----RQEKVEIA 169 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a 169 (272)
|++++|++...... +......=...+.+..+.+-|.+.+++|.+-+ +..|.+.|..++. ..+.+.+|
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhH
Confidence 88888887776621 22233333445667777788888888886542 4556665555553 34567788
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH-HHHHHHhhhHHHHHHHHHHHHh
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI-KALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.-+|+++-+. ..|+..+.+-...++...|++++|..++++...+..+ +..+...+ ..+.....+.+...+...+++.
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888754 3677777777777788888888888888888776443 34444433 3344444444555666666665
Q ss_pred cC
Q 048616 249 FG 250 (272)
Q Consensus 249 ~~ 250 (272)
..
T Consensus 271 ~~ 272 (299)
T KOG3081|consen 271 SH 272 (299)
T ss_pred cC
Confidence 44
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=2.8e-06 Score=57.60 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 201 (272)
...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...+...|++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 333444444444444444443322 2233333344444444444444444444443332 22233333334444444444
Q ss_pred HHHHHHHHHHHH
Q 048616 202 VEAEKSFLEMIE 213 (272)
Q Consensus 202 ~~a~~~~~~~~~ 213 (272)
++|.+.|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=4.5e-05 Score=62.56 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
.|+-++|.+....-.+.++. +.+.|+.+.-.+...+++++|++.|+.....+ +.|...+.-+.-.-++.++++.....
T Consensus 54 lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444444433332 44445444444444455555555555554432 22344444444444444555555555
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC-CCCCHhhHHHHHHH------HHhcCcHHHHHHHHHH
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG-CLPNTQSCMFLVKL------CKRQEKVEIALQLWND 175 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~ 175 (272)
..++.+..+. ....|..+..++.-.|++..|..+++...+.. -.|+...+...... ..+.|.++.|.+.+..
T Consensus 132 r~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 4444443221 23344445555555555555555555554332 13344333322211 1234444444444433
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 048616 176 MVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225 (272)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (272)
.... +......-..-...+.+.+++++|..++..++.. .||..-|.-
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 3222 1111111122334445555555555555555554 445554444
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=6.7e-05 Score=59.67 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCcHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN-TQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 167 (272)
.+...|++++|+..++.++...+ -|...+......+.+.++..+|.+.++++... .|+ ......+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 35567889999999999887633 25555566778888999999999999988876 444 455666778888999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
+|..+++...... +.|...|..|.++|...|+..++.....+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999998887665 67788899999999988888777654443
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.7e-05 Score=64.22 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=141.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
+=++.+...|++++|....+++...+ +-+...+..-+-+.++.+++++|+.+.+.-... ..+...+--=.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 44667888999999999999999876 446667777888899999999999665543211 111111112233455789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 95 RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP-NTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
..|+|+..++-.... +..+...-...+.+.+++++|+++|+.+.+.+..- +...-..++.+-.. -.+ ++
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~- 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QL- 163 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HH-
Confidence 999999999822221 34466666778899999999999999997764321 11122222221111 111 11
Q ss_pred HHHHHcCCCccHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHc-------------CCCCcHHhHH-HHHHHHHHhhhH
Q 048616 174 NDMVEKGFGSYILVSDVL---FDLLCDMGKLVEAEKSFLEMIEK-------------GHKPSQVSFR-RIKALMELANKQ 236 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~-~l~~~~~~~~~~ 236 (272)
+......| ..+|..+ ...+...|++.+|++++....+. ++.-...+.. .+.-++...|+.
T Consensus 164 --~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 164 --LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred --HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 22222223 2233332 33456789999999999888321 1111112222 256677889999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHH
Q 048616 237 EALQNLSNKMALFGPSMIPKREE 259 (272)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~p~~~~ 259 (272)
+++..+|...+...+.-.|...+
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH
Confidence 99999999999887533333333
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=8.6e-05 Score=59.87 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-HHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKA 228 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~ 228 (272)
.+|...++...+...++.|..+|.+.++.+..+ ++.++++++..+|. ++.+-|.++|+--.++ -+|...|.. .+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 357778888888899999999999999887766 77788889987765 6678899999887765 556666664 788
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhc
Q 048616 229 LMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMS 265 (272)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ 265 (272)
.+...++.+.+..+|++....++...-....|..+|.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 8889999999999999998876443334466666654
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=5.4e-05 Score=60.19 Aligned_cols=192 Identities=14% Similarity=0.073 Sum_probs=136.5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
|+...+...+........-..+-.++.+..+. .-...-|..-+ .+...|++++|+..++.+... .+-|+..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 45555555555444333333333333332221 11222344333 445689999999999998876 334555666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
..+.+.++..+|.+.++.+... .|+ ......+..+|.+.|++.+|..+++...... +-|...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 8999999999999999999987 444 5566678899999999999999999987764 66889999999999999998
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (272)
.++..-.. +.+...|+++.|...+....+. .+++..+|..
T Consensus 425 ~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~aR 464 (484)
T COG4783 425 AEALLARA------------------EGYALAGRLEQAIIFLMRASQQ-VKLGFPDWAR 464 (484)
T ss_pred HHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 87765543 3456789999999999888776 4556665553
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=7.3e-05 Score=61.43 Aligned_cols=246 Identities=10% Similarity=0.089 Sum_probs=174.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|..++.+| ..+++...+++.+.+.+. .+-...+.....-.+...|+.++|......-.... .-+.+.|+.+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 4455666655 567888888888888774 33345555555555667788888888887777654 34667788777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
-...++++|++.|......+.. |...|.-+.-.-.+.++++........+.+.. +.....|..+..++--.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999988877543 66777777667778888888888877776653 334567788888888888999999
Q ss_pred HHHHHHHHcC-CCccHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-HHHHHHHhhhHHHHHHH
Q 048616 171 QLWNDMVEKG-FGSYILVSDVLF------DLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNL 242 (272)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~ 242 (272)
.++++..+.. -.|+...+.... ......|.+++|.+.+..-... ..|...+.- -...+.+.++.++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 9988887664 245544443322 2345678888888877766443 335555543 57778888999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHhhccc
Q 048616 243 SNKMALFGPSMIPKREEYLAEMSAS 267 (272)
Q Consensus 243 ~~~~~~~~~~~~p~~~~~~~ll~ac 267 (272)
+..++... ||...|...+..|
T Consensus 242 y~~Ll~rn----Pdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 242 YRRLLERN----PDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHhhC----chhHHHHHHHHHH
Confidence 99988776 8887777665544
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.65 E-value=5.4e-08 Score=48.98 Aligned_cols=33 Identities=42% Similarity=0.766 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD 44 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 44 (272)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777666665
No 110
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=0.00013 Score=60.18 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGL 55 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 55 (272)
..|.+|.+.|.+.|.+++|..+|++....- .+..-|..+.++|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 479999999999999999999999877642 2333344444443
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.1e-05 Score=65.03 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=164.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--------CH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP--------DA 80 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~ 80 (272)
++..|-.|-......++-..|+..+.+..+.++. |....-.|.-.|...|.-..|...++.-.....+- +.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 5667888888888899999999999999987654 77888888889999999999999998886543110 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVE-KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
..-.. ..+.....+....++|-++.. .+..+|+.....|--.|.-.|++++|.+.|+.....+ +-|..+|+.|-..
T Consensus 397 ~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 397 DFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGAT 473 (579)
T ss_pred cccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHH
Confidence 00000 111222234455566655554 4434677788888888999999999999999998874 5577899999999
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCcHHhHHHHHHHH
Q 048616 160 CKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK---------GHKPSQVSFRRIKALM 230 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~p~~~~~~~l~~~~ 230 (272)
++...+.++|+..|.+.++..+..-.+-|| |.-.|...|.+++|.+.|-..+.. +..++...|.+|-.++
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al 552 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL 552 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence 999999999999999999875333333344 566789999999999999776532 1223445677776666
Q ss_pred HHhhhHHHHHH
Q 048616 231 ELANKQEALQN 241 (272)
Q Consensus 231 ~~~~~~~~a~~ 241 (272)
...++.|-+.+
T Consensus 553 s~~~~~D~l~~ 563 (579)
T KOG1125|consen 553 SAMNRSDLLQE 563 (579)
T ss_pred HHcCCchHHHH
Confidence 66666664443
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=3.6e-06 Score=66.76 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (272)
..++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.... +......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 334444444455555555555555442 22 2223444444455555555555555543221 334444444445555
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|...++.+
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555554441 222335555555555555555555555443
No 113
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.63 E-value=9e-07 Score=70.46 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=94.5
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (272)
+.+.+......+++.+....+++.+..++.+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777788887778888888888877664 2222345567888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (272)
++.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887766656667776666666554
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=7.7e-05 Score=54.79 Aligned_cols=228 Identities=14% Similarity=0.073 Sum_probs=145.5
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
+-.|+-..|+ ++-+.-.|.+..++..-....... -+...-.-+.++|...|.+..... ++.... .|......
T Consensus 5 ~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr 76 (299)
T KOG3081|consen 5 EAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVR 76 (299)
T ss_pred ccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHH
Confidence 3344444444 344445788888877766554432 244444557778888887654432 333222 34444444
Q ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 85 AAIRNYCIAKRLRDAS-GLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
.+......-++.+.-+ ++.+.+.......+......-...|+..+++++|++..+... +......=+..+.+.
T Consensus 77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~ 150 (299)
T KOG3081|consen 77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKM 150 (299)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHH
Confidence 4444444444444443 444555555444344444455567889999999998887621 233333344556678
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHH
Q 048616 164 EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC----DMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL 239 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (272)
.+++-|.+.++.|.+.. +..+.+-|..++. ..+.+.+|.-+|++|-++ ..|+..+.+-.+.++...+++++|
T Consensus 151 ~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHH
Confidence 88999999999998653 3455554555444 456788999999999765 678888888888899999999999
Q ss_pred HHHHHHHHhcC
Q 048616 240 QNLSNKMALFG 250 (272)
Q Consensus 240 ~~~~~~~~~~~ 250 (272)
..+++....+.
T Consensus 227 e~lL~eaL~kd 237 (299)
T KOG3081|consen 227 ESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHhcc
Confidence 99999988766
No 115
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=7.6e-08 Score=48.08 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISP 43 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 43 (272)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466667777777777777777777776666655
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=1.2e-05 Score=63.91 Aligned_cols=124 Identities=16% Similarity=0.211 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..... +-+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33455566666777888888888887763 33 33446677777777777888777776542 335555555666677
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+.++.+.|..+.++..... +.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7788888888888777663 444557777888888888888887777654
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2.5e-05 Score=67.89 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=131.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGL------------ 111 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------ 111 (272)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++.+.+..+ .+...-.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 56778999999999999999999999777652 22334444444466666666666555 3332210
Q ss_pred ------CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 048616 112 ------SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI 185 (272)
Q Consensus 112 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (272)
.-+..++..+..+|-+.|+.+++...|+++.+.+ +-+..+.+.+...|+.. ++++|.+++......
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 1123566678888889999999999999999887 55788899999999988 999999999887654
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------CCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEK-------------------GHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+...+++..+.++|.++... |..--..++.-+-..|...++++.+..+++.+
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33334444555555544443 22222334444567788888999999999999
Q ss_pred HhcC
Q 048616 247 ALFG 250 (272)
Q Consensus 247 ~~~~ 250 (272)
.+..
T Consensus 250 L~~~ 253 (906)
T PRK14720 250 LEHD 253 (906)
T ss_pred HhcC
Confidence 8765
No 118
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.58 E-value=2.4e-06 Score=68.14 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=106.0
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048616 39 EDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY--GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNAT 116 (272)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (272)
.+.+.+......+++.+....+++.+..++.+.... ....-+.|.+++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567778888899998889999999999998865 232334566799999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 117 TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
+++.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998877777777777777766554
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.58 E-value=1.3e-07 Score=47.50 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777776
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9.1e-06 Score=60.58 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH-HHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL-FFRV 124 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 124 (272)
.-+...+..+.+..+++.|++++..-.++. +.+....+.|..+|....++..|-..++++... .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346677777788899999999999888774 237778889999999999999999999999876 344444432 3456
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH--HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC--KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (272)
+.+.+.+..|+.+...|... |....-..-+.+. -..+++..+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888643 2322222222222 35678888888887765433 2333344444566899999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCC
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPK 256 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~ 256 (272)
.|.+-|+...+.+---....|+.-+ +.-+.++.+.|.++..+++++|.+-.|.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 9999999988764444556777544 4445688899999999999988765553
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00026 Score=57.77 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHH--------HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWN--------DMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK--GHKPSQ 220 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~ 220 (272)
.+....+......|+++.|.+++. .+.+.+..|..+ ..++..+.+.++-+.|..++++.+.. .-.+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 445555666778899999999988 555555555543 55666677777777777777766532 001111
Q ss_pred H----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcccccC
Q 048616 221 V----SFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASDSF 270 (272)
Q Consensus 221 ~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~ 270 (272)
. ++.-.+..-.+.|+.+++..+++++.+..+ +|..+...++.|++.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYARL 505 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHhc
Confidence 2 223345555677999999999999998663 7777788888776554
No 122
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=0.0002 Score=55.98 Aligned_cols=238 Identities=14% Similarity=0.090 Sum_probs=157.7
Q ss_pred CCcCHHhHHHHHHHHHh--cCCHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-H
Q 048616 6 VKPDIVSYNCLIDVYCK--DRQVEKAYKIVEKMRD-EDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA-A 81 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 81 (272)
+.|........+.+++. .++...|...+-.+.. .-++-|......+.+.+...|+.++|+..|++....+ |+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 34444444444554443 3444455555544433 2356678888999999999999999999999988653 332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
......-.+.+.|+.+....+...+....- -+...|-.-.......++++.|+.+-++.++.+ +-+...+..--..+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 333334445678888888888888875521 134445445556667889999999999887764 234445554556778
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE---------------------------- 213 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------------- 213 (272)
..++.++|.-.|+...... +.+..+|.-|+.+|...|++.+|.-.-+...+
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999999999887653 46778999999999999999887765443322
Q ss_pred ----cC--CCCcHH-hHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 214 ----KG--HKPSQV-SFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 214 ----~~--~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
++ +.|+-. ..+.+...+...|..+.+..++++...
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 11 223322 233466677777777777777777554
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00013 Score=53.27 Aligned_cols=188 Identities=9% Similarity=0.071 Sum_probs=139.0
Q ss_pred cCCHHHHHHHHHHHhh---CC-CCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 23 DRQVEKAYKIVEKMRD---ED-ISPDVI-SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3578888888888864 33 445554 4566677777889999999999999876 3334444333333355679999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
+|.++++.+++.++. |..++---+...-..|...+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999988643 6667766666666677777888887777665 57799999999999999999999999999998
Q ss_pred HcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 048616 178 EKGFGSYILVSDVLFDLLCDM---GKLVEAEKSFLEMIEK 214 (272)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 214 (272)
-.. +.+...+..+.+.+-.. .+.+.+.++|.+.++.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 765 45555556666654444 3566788888888775
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=2e-05 Score=54.14 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCcHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPN---ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT--QSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 167 (272)
.++...+...++.+...... + ....-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555554221 1 112222334555556666666666655554312211 12333444555566666
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
+|...++..... ......+....+.+.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665443222 22233444555556666666666665554
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=1.6e-05 Score=54.60 Aligned_cols=85 Identities=7% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPN--ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
..+...|++++|...|+........|+ ......+...+...|++++|+..++..... ......+.....++.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 444445555555555555554432111 112223344444555555555555442221 1222233344445555555
Q ss_pred HHHHHHHHH
Q 048616 166 VEIALQLWN 174 (272)
Q Consensus 166 ~~~a~~~~~ 174 (272)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555544
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.53 E-value=2.3e-07 Score=46.29 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (272)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 127
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00015 Score=65.24 Aligned_cols=239 Identities=12% Similarity=0.029 Sum_probs=151.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-C
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDE----DIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCY--P-D 79 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (272)
.++.+...+...|++++|...+.+.... |.. +...++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4455666677889999999998887642 111 11234455666778899999999998876642 211 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCCCH-
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKG--LSP--NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLPNT- 150 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 150 (272)
...+..+...+...|++++|...+++..... ..+ ....+..+...+...|+++.|...+++.... +.....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334455566777899999999988876431 112 2334444566778899999999988877432 111111
Q ss_pred hhH-HHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcH-H
Q 048616 151 QSC-MFLVKLCKRQEKVEIALQLWNDMVEKGFGSY---ILVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GHKPSQ-V 221 (272)
Q Consensus 151 ~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~ 221 (272)
... ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..++. .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 000 1122344567889998888776543221111 111345667788999999999999887653 322222 2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 222 SFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+...+..++...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34456778889999999999999887654
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.00053 Score=58.63 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=146.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 20 YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGG--LGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
....+++..|......+.+.. |+. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 346788999999999888763 343 24445554 45789999999888888766544 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----C------cHH
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ----E------KVE 167 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~------~~~ 167 (272)
+|..+|++.... .|+......+..+|++.+++.+-.+.--++-+. .+-....+=.+++..... + -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999877 466777777888888888876543333233221 222233332333333211 1 123
Q ss_pred HHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKG-FGSYILVSDVLFDLLCDMGKLVEAEKSFL-EMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 168 ~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
-|....+.+.+.+ .--+..-.......+...|++++|.+++. ...+.-..-+...-+.-...+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4555666665553 22222222233444567888999999984 444442333333444567778888889999999999
Q ss_pred HHhcC
Q 048616 246 MALFG 250 (272)
Q Consensus 246 ~~~~~ 250 (272)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88888
No 129
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=0.0006 Score=57.37 Aligned_cols=230 Identities=12% Similarity=0.074 Sum_probs=151.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 94 (272)
+---|+..++.+.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |. |-.....-++.-...+
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcc
Confidence 33446678889999999999888766668888988888888889999999888776543 21 0000000011111122
Q ss_pred CHHHHHHHHHHHH---------------------------------------------------HcC---------C--C
Q 048616 95 RLRDASGLMDEMV---------------------------------------------------EKG---------L--S 112 (272)
Q Consensus 95 ~~~~a~~~~~~~~---------------------------------------------------~~~---------~--~ 112 (272)
+.++++.....+. ..| . .
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 2222222111110 000 0 0
Q ss_pred CC------HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH
Q 048616 113 PN------ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186 (272)
Q Consensus 113 ~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (272)
|+ ...|......+.+.++.++|...+.+..... +.....|......+...|.+++|.+.|......+ +.++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~ 719 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVP 719 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcH
Confidence 11 1123344455666777777777777665542 3445556666667778899999999998887765 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 187 VSDVLFDLLCDMGKLVEAEK--SFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...++...+.+.|+..-|.. ++.++.+.+. -+...|..+...+.+.|+.++|.+.|+...+..
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 67889999999998887777 8999988753 377788889999999999999999999876543
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00064 Score=61.33 Aligned_cols=233 Identities=11% Similarity=-0.001 Sum_probs=149.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDV----ISYTSIIGGLGLVGQPDKARDVLKEMKEYGC---YP--DAAAYNAAI 87 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 87 (272)
-..+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.....- .+ ...++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34556789999999999988763111121 2345566667789999999999988874311 11 123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC--CCCC--CHhhHHHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEK----GLS--P-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT--GCLP--NTQSCMFL 156 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l 156 (272)
..+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788899999999999887643 221 1 1233445556677789999999998877442 1112 23344445
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcC--CCccHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH---HhHHHHH
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEKG--FGSYIL--V--SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ---VSFRRIK 227 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~ 227 (272)
.......|+.+.|...+....... ...... . ....+..+...|+.+.|.+++............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999988875431 111110 0 011224455689999999998775432111111 1123467
Q ss_pred HHHHHhhhHHHHHHHHHHHHhc
Q 048616 228 ALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.++...|+.++|...+++....
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788889999999999887654
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=3.4e-05 Score=50.84 Aligned_cols=99 Identities=7% Similarity=-0.105 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS--PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAYNAAI 87 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 87 (272)
++-.+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666666777777777777777654221 11334555666777777777777777777654211 1234556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKG 110 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~ 110 (272)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66677777777777777776663
No 132
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.38 E-value=5.7e-07 Score=43.75 Aligned_cols=29 Identities=41% Similarity=0.775 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDED 40 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 40 (272)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 133
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.38 E-value=1.2e-05 Score=50.92 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=39.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGC-YPDAAAYNAAIRNYCIAK--------RLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555554444321 2334555666666666666666666666
Q ss_pred HHHhh
Q 048616 123 RVFYW 127 (272)
Q Consensus 123 ~~~~~ 127 (272)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 55543
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.37 E-value=1.3e-05 Score=50.71 Aligned_cols=70 Identities=11% Similarity=0.239 Sum_probs=35.2
Q ss_pred hcCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGF-GSYILVSDVLFDLLCDMG--------KLVEAEKSFLEMIEKGHKPSQVSFRRIKALME 231 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (272)
..+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..+++|+..+|+.++..+.
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 33444444444444444444 444444544444444322 22344555666666666666666666555443
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=2.6e-05 Score=48.76 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
|..+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344455555566666666666665554221 33445555555556666666666666655543 2233455555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 048616 93 AKRLRDASGLMDEMVE 108 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (272)
.|+.+.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666555543
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0012 Score=56.63 Aligned_cols=207 Identities=13% Similarity=0.127 Sum_probs=140.4
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 048616 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAY 83 (272)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (272)
++-.|-+.++.++. ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|++..+. -|+....
T Consensus 39 ~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell 113 (932)
T KOG2053|consen 39 HPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELL 113 (932)
T ss_pred CCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHH
Confidence 33333344444433 45789999999999888776555 8889999999999999999999999999976 4677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC-Ch---------hhHHHHHHHHHhCC-CCCCHhh
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN-DL---------RSSWNLYCRMMGTG-CLPNTQS 152 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---------~~a~~~~~~~~~~~-~~~~~~~ 152 (272)
..+..+|.|.+++.+-.+.--++-+. .+-+...|-.+++.+.+.. .. .-|.+.++.+.+.+ ..-+..-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 88888999988887766655555543 2224444444555444321 11 22555566665543 2222333
Q ss_pred HHHHHHHHHhcCcHHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 153 CMFLVKLCKRQEKVEIALQLWN-DMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
...-...+...|++++|..++. ...+.-...+...-+.-++.+...+++.+..++-.++..+|.
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3334455678899999999994 444443344445556777888899999999999999888754
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=0.00071 Score=51.86 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=164.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC------------Hh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPD------------VI--SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
.+.+.|.+++|..=|+..++....-+ .. .....+..+...|+...|+....++.+-. +-|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 46789999999999999988643211 11 12234455667899999999999999863 34777788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH-------HH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF-------LV 157 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 157 (272)
.-..+|...|++..|+.=++...+..-. +..++..+-..+...|+.+.++...++..+. .||...+.. +.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 8889999999999999888777766433 5666667778888899999999998888765 455432211 11
Q ss_pred ------HHHHhcCcHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHH
Q 048616 158 ------KLCKRQEKVEIALQLWNDMVEKGFGSYI---LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS-QVSFRRIK 227 (272)
Q Consensus 158 ------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 227 (272)
......++|.++.+-.+...+....... ..+..+-.++...|++.+|++...+.++. .|| ..++.--.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHH
Confidence 1234566777787777777766533222 23344556777889999999999998875 555 66676678
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcC
Q 048616 228 ALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+|.....++.|+.-|++..+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 88998899999999999887655
No 138
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.31 E-value=9e-05 Score=56.85 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHHhhhHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ---VSFRRIKALMELANKQEALQN 241 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~ 241 (272)
+.+.|..+|+...+. +..+...|...++.+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444433 2333444444444444445555555555444433 11111 244444444444455555555
Q ss_pred HHHHHHh
Q 048616 242 LSNKMAL 248 (272)
Q Consensus 242 ~~~~~~~ 248 (272)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 139
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.30 E-value=4.9e-05 Score=58.29 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=98.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL-VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
.+|-.+|+..-+.+..+.|..+|.+.++.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578888888888888999999999888643 2345555555555333 56677799999888876 55677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
+...++.+.|..+|++.... + |.. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88889999999999888765 2 233 47888888888888888888888887664 334333333433
No 140
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00017 Score=61.28 Aligned_cols=211 Identities=11% Similarity=0.112 Sum_probs=106.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE---------DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD 79 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (272)
+..+|..+..+|.+..+.+-|.-.+-.|... .-.|+ .+=..+.-.....|.+++|+.+|++-+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3445555666665555555554444333211 00111 11111222233455566666666555442
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHH----------HhCC----
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRM----------MGTG---- 145 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~---- 145 (272)
..|=..|-..|.|++|.++-+.--...+ ..||.....-+-..++.+.|++.|++. ....
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2233445556666666665543222211 234444555555566666666666542 1110
Q ss_pred -----CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 146 -----CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
...|...|.-....+...|+.+.|+.+|...++. -.+++..|-.|+.++|-++-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhc------ccH
Confidence 0122233333344444566666666666554432 34455555666666666655442 244
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 221 VSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.....|.+.|...|++.+|..+|-+..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455568888888888888888887754
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=9e-05 Score=48.80 Aligned_cols=97 Identities=10% Similarity=-0.082 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHH
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP--NATTYNLFFR 123 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 123 (272)
+..+...+.+.|++++|.+.|+++.+.... .....+..+..++.+.|++++|.+.|+.+....... ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555556666666666665543210 112344445555556666666666666555432111 1233444455
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 048616 124 VFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (272)
++.+.+++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 142
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=8.5e-05 Score=56.93 Aligned_cols=192 Identities=12% Similarity=-0.000 Sum_probs=118.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCH-HhHHHHH
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK-------RLRDASGLMDEMVEKGLSPNA-TTYNLFF 122 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 122 (272)
|+--|.+.+++.+|..+.+++.- .++.-|-.-.-.+.+.| .+.-|.+.|+-.-..+..-|. .--..+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 44456788888888888776632 12222221122222222 345566666554444433222 2244566
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (272)
..+.-..++++++..+..+...=...|...+ .+..+.+..|++.+|+++|-.+....++.+..-...+.++|.+.++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 6667777888888888887765333344444 477888889999999999977765554444333355677889999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHH-HHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.|++++-.+. -+.+..+.- .+..-|-+.+.+--+.+.|+.+....
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 8888776553 222233333 35667888888777777888776544
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=8.3e-05 Score=46.36 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHh
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELA 233 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (272)
..+...+...|++++|...+....+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 344455556666666666666665543 22334455566666666777777777766665422 2334555566666667
Q ss_pred hhHHHHHHHHHHHHh
Q 048616 234 NKQEALQNLSNKMAL 248 (272)
Q Consensus 234 ~~~~~a~~~~~~~~~ 248 (272)
|+.+.+...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777776666554
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.24 E-value=1.7e-06 Score=42.02 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666665544
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00089 Score=58.36 Aligned_cols=158 Identities=8% Similarity=0.023 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVK 158 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (272)
.+.+|..+..+-.+.|...+|.+-|-+. -|+..|...+....+.|.|++..+.+....+....|... +.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456666666666666666666554322 155566667777777777777666666555544444332 34666
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
+|++.+++.+.++++. .|+..-...+.+-|...|.++.|.-++.. ...|..+...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Confidence 6667666666555442 34444455556666666666666555433 3456667777777777777
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhcccc
Q 048616 239 LQNLSNKMALFGPSMIPKREEYLAEMSASD 268 (272)
Q Consensus 239 a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~ 268 (272)
|.+--++. .+..||..+=.||-
T Consensus 1239 AVD~aRKA--------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1239 AVDAARKA--------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhhhc--------cchhHHHHHHHHHh
Confidence 77655542 33455555555553
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=3.8e-06 Score=51.73 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG 101 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (272)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555566666555554321 1233333455555555666666555555 21111 122333334555555555555555
Q ss_pred HHHH
Q 048616 102 LMDE 105 (272)
Q Consensus 102 ~~~~ 105 (272)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=0.00011 Score=58.37 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=81.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
-...+...|++++|++.|++..+.+.. +...|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999987544 77888889999999999999999999999874 3467788899999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 048616 96 LRDASGLMDEMVEKGL 111 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~ 111 (272)
+++|...|++.++.+.
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999998743
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=9.7e-05 Score=50.35 Aligned_cols=98 Identities=6% Similarity=-0.100 Sum_probs=72.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
....-.+...+...|++++|..+|+-+.... +-+..-|..|.-++-..|++.+|+..|.......+. ++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3344445556667888888888888887764 235566667777788888888888888888877653 67777778888
Q ss_pred HhhcCChhhHHHHHHHHHhC
Q 048616 125 FYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (272)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877554
No 149
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.17 E-value=0.0016 Score=54.88 Aligned_cols=207 Identities=13% Similarity=0.081 Sum_probs=126.3
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 048616 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD-AAAYN 84 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 84 (272)
+.-|...|..+--+....|+++.+.+.|++....-+. ....|..+-..+...|.-..|..+++........|+ +..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777888888888888888888888877653222 556777788888888887788888777664432343 33332
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHhHHHHHHHHhhc-----------CChhhHHHHHHHHHhCCCCC
Q 048616 85 AAIRNYC-IAKRLRDASGLMDEMVEK--GL--SPNATTYNLFFRVFYWS-----------NDLRSSWNLYCRMMGTGCLP 148 (272)
Q Consensus 85 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 148 (272)
..-..|. +.+..++++.+-.+.... +. ......|..+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 2223332 355666666666655541 10 01222333333333221 1234566677776555422
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 149 NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
|......+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 222222233345667788888888888887765777778887777788888888888888776543
No 150
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.17 E-value=0.00028 Score=59.35 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 201 (272)
+.+....++|.+|+.+++.+..++. -..-|..+...|+..|+++.|+++|-+.- .++--|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445556677777777776655432 23345566667777777777777664421 223445666677777
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHH
Q 048616 202 VEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQN 241 (272)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (272)
++|.++-.+.. |.......|.+-..-...+|.+.+|++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 77766655542 222233334333333444444444443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=0.00031 Score=49.80 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=68.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD--AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34456666666667777777777777665432221 345666666777777777777777776665322 344455555
Q ss_pred HHHhhcCC--------------hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 123 RVFYWSND--------------LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 123 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
..+...|+ +++|.+++++....+ |+. |..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcC
Confidence 55555555 567888888776543 332 444555444443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=6.9e-06 Score=50.58 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=34.3
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHH
Q 048616 59 GQPDKARDVLKEMKEYGCY-PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNL 137 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (272)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+.. +......+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544221 1233333345555555555555555554 211111 112222334455555555555555
Q ss_pred HH
Q 048616 138 YC 139 (272)
Q Consensus 138 ~~ 139 (272)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=0.00022 Score=56.73 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=41.7
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 204 (272)
+...|++++|+..|++..+.+ +-+...|..+..++.+.|++++|...++...... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 334445555555555544432 2233444444445555555555555555554443 22334444445555555555555
Q ss_pred HHHHHHHHH
Q 048616 205 EKSFLEMIE 213 (272)
Q Consensus 205 ~~~~~~~~~ 213 (272)
...|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555544
No 154
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.0028 Score=51.34 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHH
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA-------AYNA 85 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ 85 (272)
...+.++.-+..+++.|++-+....... -+..-++....++...|.+......-....+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456667777788888888888887764 25555566667777777777766666665554421 111 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcC
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQE 164 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 164 (272)
+..+|.+.++++.+...|.+.....-.|+.. .+....+++....+...-.+ |.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhcc
Confidence 3445666778888888888766543333221 11222233333332222111 111 00111123344555
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS-QVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
++..|...|.++.+.. +.|...|..-.-+|.+.|.+..|++-.+..++. .|+ ...|..=..++....+++.|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655554 444555555555556666666555555555443 222 222222333444445555555555
Q ss_pred HHHHh
Q 048616 244 NKMAL 248 (272)
Q Consensus 244 ~~~~~ 248 (272)
++..+
T Consensus 450 ~eale 454 (539)
T KOG0548|consen 450 QEALE 454 (539)
T ss_pred HHHHh
Confidence 55443
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=0.0018 Score=48.54 Aligned_cols=183 Identities=11% Similarity=0.054 Sum_probs=108.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAY---NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (272)
...+-.....+.+.|++++|.+.|+++...-.. +.... -.+..++.+.+++++|...+++..+..+......+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333334455556788999999999998875322 22222 35567788889999999999998877544333344444
Q ss_pred HHHHhh--cC---------------Ch---hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048616 122 FRVFYW--SN---------------DL---RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181 (272)
Q Consensus 122 ~~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (272)
+.+.+. .+ +. .+|+..| ..+++-|=...-..+|...+..+...=
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~l- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDRL- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHHH-
Confidence 444332 10 11 1222333 334444434444555555444443320
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK--GHKPSQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 182 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
-..- -.+.+.|.+.|.+..|..-++.+++. +.+........+..+|...|..+++..+.+.+.
T Consensus 175 --a~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 --AKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011 24566788899999999999998875 222233344457888999999998888777654
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0017 Score=50.09 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
+.-+....++..|+.+++--...+-.-...+-.-+..++...|++++|...+.-+.+. -.++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 3445556677777777765543332212222233455666777777777777777664 345566666666666666777
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
.+|.++-....+ ++---..+...-.+.++-++...+-+.+... ..--.++....-..-.+++|++++..+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777665544322 2222233444455566655555544444321 111222333222334667777777777
Q ss_pred HHcCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 177 VEKGFGSYILVSDV-LFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 177 ~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
...+ |.-...|. +.-+|.+..-++-+.++++-....
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 6553 33333333 333456667777777777776655
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.11 E-value=0.00025 Score=50.76 Aligned_cols=103 Identities=11% Similarity=0.044 Sum_probs=55.8
Q ss_pred CHHhHHHHHHHHhhc-----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHH
Q 048616 114 NATTYNLFFRVFYWS-----NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVS 188 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (272)
+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 555555555555432 3444445555555555555555555555555432 1110 110 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhh
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANK 235 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (272)
.++.. -.-.+-+-|.+++++|...|+-||..++..++..+.+.+.
T Consensus 109 Q~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000 0112345678888888888888888888888888876654
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.10 E-value=9e-05 Score=53.01 Aligned_cols=111 Identities=17% Similarity=0.302 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------
Q 048616 29 AYKIVEKMRDEDISPDVISYTSIIGGLGL-----VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI----------- 92 (272)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 92 (272)
-.+.|+..... ..+..+|..++..+.+ .|..+-....++.|.+.|+..|..+|+.|++.+=+
T Consensus 33 ~~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 33 HEELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred hHHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 34555555322 2367778888877764 46777788888888888888899999888887543
Q ss_pred -----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh-hhHHHHHHHH
Q 048616 93 -----AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL-RSSWNLYCRM 141 (272)
Q Consensus 93 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 141 (272)
-.+.+-|++++++|...|+.||..++..++..+.+.+.. .+..++.-.|
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 124577899999999999999999999999999887765 3444444444
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.10 E-value=0.00061 Score=48.29 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN--ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (272)
...+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566777778888888888888888876543322 3567777788888888888888888877653 22455566666
Q ss_pred HHHHhcCc--------------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048616 158 KLCKRQEK--------------VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK 200 (272)
Q Consensus 158 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (272)
..+...|+ +++|.+++......+ |+. |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCc
Confidence 66666665 577888888877653 332 4455555555443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=0.00055 Score=57.01 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=83.1
Q ss_pred CCCCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 048616 40 DISPDVISYTSIIGGLGLV-----GQPDKARDVLKEMKEYGCYPD-AAAYNAAIRNYCIA--------KRLRDASGLMDE 105 (272)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 105 (272)
..+.+...|...+++.... ++.+.|..+|++..+.. |+ ...|..+..++... .++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455667777777764432 22567777788777753 44 33444333333221 123344444444
Q ss_pred HHHc-CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 106 MVEK-GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 106 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
.... ....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3332 122345666666555666788888888888887764 567778888888888888888888888776654
No 161
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.08 E-value=0.0044 Score=51.56 Aligned_cols=128 Identities=8% Similarity=0.019 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD---VISYTSIIGGLGLVGQPDKARDVLKEMKEYG-----------CY 77 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~ 77 (272)
.|-.+...|-..|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.++..... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456666666677777777777777665433311 2344444444445566666666666554211 01
Q ss_pred C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHH
Q 048616 78 P------DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCR 140 (272)
Q Consensus 78 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (272)
+ +...|...+..--..|-++....+++++++..+. ++...-.....+-.+..++++.+.|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 1 2233444444444556666666666666655432 222211222223334444555555544
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=0.0003 Score=49.65 Aligned_cols=114 Identities=9% Similarity=-0.086 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHh-hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 26 VEKAYKIVEKMR-DEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP--DAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 26 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
+..+...+..+. ..+..-....|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222234456666677777788888888888776543222 234677777778888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHh-------hcCChhhHHHHHHH
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFY-------WSNDLRSSWNLYCR 140 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 140 (272)
+++....... ...++..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8777765322 3444555555555 66776655544443
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=0.0023 Score=48.04 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=110.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISY---TSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
...+-.....+.+.|++++|.+.|+.+....+. +...- -.+..++.+.+++++|...+++..+........-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333434455566789999999999999886433 23222 34667889999999999999999986432222333333
Q ss_pred HHHHHh--cC---------------C---HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 048616 87 IRNYCI--AK---------------R---LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 87 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (272)
+.+.+. .+ | ..+|+..|+++++. -|++. -..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH--
Confidence 333321 11 1 23455666666655 23332 233343333333211
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 147 LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK--GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
.-..-+ .+.+-|.+.|.+..|..-++.+.+. +-+......-.++.+|...|..++|.++...+.
T Consensus 174 -la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011111 4556677888888888888888766 223334555677788888888888888776653
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.001 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKM 36 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~ 36 (272)
..|....+.|...|++++|.+.|.+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34555555565666666666666554
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=0.0011 Score=45.36 Aligned_cols=98 Identities=9% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
......+...+...|++++|.++|+-+....+. +...|..|..++-..|++++|+..|......+ +-+...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344455666677889999999999888877544 66677788888888999999999999887776 3567777788888
Q ss_pred HHhcCcHHHHHHHHHHHHHc
Q 048616 160 CKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (272)
+...|+.+.|.+-|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999887765
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.001 Score=51.25 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--H
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYPD-AAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPN--A 115 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~ 115 (272)
..|......|-..+++++|.+.|.+..+. +-+.. ...|.....+|.+ .++++|...+++..+. .-.|+ .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34666677777788888888888776432 21111 2234444444444 4788888877776542 11122 2
Q ss_pred HhHHHHHHHHhhc-CChhhHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-----c
Q 048616 116 TTYNLFFRVFYWS-NDLRSSWNLYCRMMG----TGCLPN--TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG-----S 183 (272)
Q Consensus 116 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 183 (272)
..+..+...|... |++++|.+.|++..+ .+ .+. ..++..+...+.+.|++++|.++|+++...... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3455566667676 778888887777633 22 111 234556666777778888888888777654221 1
Q ss_pred cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcH--HhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 184 YIL-VSDVLFDLLCDMGKLVEAEKSFLEMIEKG--HKPSQ--VSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 184 ~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
+.. .+-..+-++...|++..|.+.+++..... +..+. .....|+.++. .++.+...+.+.+..
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHc
Confidence 111 22222334555677777777777776542 11111 11122344443 455555555555543
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.0038 Score=54.48 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDE 105 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (272)
...|+..|-+..+.... =...|..|...|....+...|.+.|++..+.. ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555555444443322 23456666666666666677777777776653 23555666667777777777777776322
Q ss_pred HHHcCCC-CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 048616 106 MVEKGLS-PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY 184 (272)
Q Consensus 106 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (272)
.-+.... .-..-|...--.|...++..++..-|+...+.+ +-|...|..+..+|...|++..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 2222110 001112223334556667777777777666554 346667777777777777777777777666544 232
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 048616 185 ILVSDVLFD--LLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 185 ~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 213 (272)
..|...-. ..+..|.+.+|...+.....
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222 23456667777666665543
No 168
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.02 E-value=0.00066 Score=57.26 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRD 98 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (272)
+......|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|.+.- .++-.|.+|.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445566666777766665432 23345666677777777777777765432 23445667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
|.++-.+.. |.......|-+-..-+-+.|.+.+|.++|-... .|+. .|..|-+.|..+..+++..+-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 777655543 223344455555555566666666666553321 2332 34455566665555555443221
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 179 KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
..-..|...+..-+...|++..|..-|-+.
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111233344555555666666666555443
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0051 Score=50.13 Aligned_cols=185 Identities=10% Similarity=0.108 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHhhcCChhhHHHH
Q 048616 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK---RLRDASGLMDEMVEK-GLSPNATTYNLFFRVFYWSNDLRSSWNL 137 (272)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (272)
+++..++++....-...+..+|..+..---..- ..+.....++++... ...| ..+|..++..--+..-...|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHH
Confidence 445555555544322233344443332211111 245555666666543 3343 34577788888888899999999
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 138 YCRMMGTGCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
|.+..+.+..+ +..++.+++..+| .++.+-|.++|+.-.+. +..++..-...++.+...++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998887777 6777888888775 57789999999875544 233444556788888999999999999999998866
Q ss_pred CCcH--HhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 217 KPSQ--VSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 217 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.|+. ..|..++..=..-|+...+.++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5544 67889999989999999999888887653
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=0.00034 Score=49.37 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP--NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (272)
...+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666677777888887777776553222 12456666777777777777777777766542 22233344444
Q ss_pred HHHH
Q 048616 158 KLCK 161 (272)
Q Consensus 158 ~~~~ 161 (272)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=0.0012 Score=43.29 Aligned_cols=90 Identities=17% Similarity=0.002 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhc
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPD--VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAYNAAIRNYCIA 93 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 93 (272)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....... .+......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666666554432 223444555566666666666666665543110 0112222223344555
Q ss_pred CCHHHHHHHHHHHH
Q 048616 94 KRLRDASGLMDEMV 107 (272)
Q Consensus 94 ~~~~~a~~~~~~~~ 107 (272)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554444
No 172
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0032 Score=55.12 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.|++-.+++.-..+..-+|... +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 45555555555566666655554322 144456666666666666666666665555544334332 3455556
Q ss_pred HhcCCHHHHHH
Q 048616 91 CIAKRLRDASG 101 (272)
Q Consensus 91 ~~~~~~~~a~~ 101 (272)
++.+++.+.++
T Consensus 1177 Akt~rl~elE~ 1187 (1666)
T KOG0985|consen 1177 AKTNRLTELEE 1187 (1666)
T ss_pred HHhchHHHHHH
Confidence 66555554443
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.0008 Score=58.40 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=123.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC-YPDAAAYNAAIRN 89 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 89 (272)
..|..|-..|....+..+|...|+...+.+.. +...+......|++..+++.|..+.-..-+... ..-..-|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 57888888898888999999999999887544 777889999999999999999998433332210 0011223334455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH--HHHHhcCcHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV--KLCKRQEKVE 167 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~ 167 (272)
|...++..+|..-|+......+. |...|..+..+|.+.|++..|.++|.+.... .|+. +|...- -.-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 77889999999999999887655 8889999999999999999999999988765 3443 232222 2335788999
Q ss_pred HHHHHHHHHHHc
Q 048616 168 IALQLWNDMVEK 179 (272)
Q Consensus 168 ~a~~~~~~~~~~ 179 (272)
++...+..+...
T Consensus 648 eald~l~~ii~~ 659 (1238)
T KOG1127|consen 648 EALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 999888877643
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.0038 Score=52.14 Aligned_cols=144 Identities=13% Similarity=0.002 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC--------hhhHHHHHHHHH
Q 048616 76 CYPDAAAYNAAIRNYCI--A---KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSND--------LRSSWNLYCRMM 142 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~ 142 (272)
.+.+...|...+.+... . ++...|..+|++..+..+. ....|..+..++..... ...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777777766433 2 2266777788887776322 23334433333322111 122222222222
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH
Q 048616 143 GT-GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV 221 (272)
Q Consensus 143 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (272)
.. ....+...+..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 21 122334555555555555677777777777776654 35566677777777777777777777776654 45555
Q ss_pred hHH
Q 048616 222 SFR 224 (272)
Q Consensus 222 ~~~ 224 (272)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 544
No 175
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.95 E-value=0.0047 Score=47.54 Aligned_cols=195 Identities=9% Similarity=0.010 Sum_probs=146.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
..+..+...|+...|++....+++..+- +...+..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh
Confidence 3445566789999999999999987544 88889989999999999999998888777653 346677777888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHH----HH---------HHHHhhcCChhhHHHHHHHHHhCCCCCCH---hhHHHHHH
Q 048616 95 RLRDASGLMDEMVEKGLSPNATTYN----LF---------FRVFYWSNDLRSSWNLYCRMMGTGCLPNT---QSCMFLVK 158 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 158 (272)
+.+.++...++.++.+ ||...+. .+ +......++|.++++-.+...+....... ..+..+-.
T Consensus 238 d~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 9999999999998763 4433221 11 12345567777777777777665432222 23445556
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
++...+++.+|++.-.++.+.. +.|..++.--..+|.-...++.|..-|+...+.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7778899999999999988764 455778877888899999999999999888775
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=8.2e-05 Score=43.61 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=26.5
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
..|++++|.++++.+.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555443 223444445555555555555555555555544
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=7.3e-05 Score=43.82 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=25.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555442 224444445555555555555555555555544
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00068 Score=50.87 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=74.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
.-+.+.+++.+|+..|.+.++..+. |.+.|..-..+|.+.|+++.|++-.+.....+ +-...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3466778888888888888887544 67777778888888888888888877776654 334578888888888888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDV 190 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~ 190 (272)
+|.+.|++.++. .|+-.+|-.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 888888877665 455444433
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00029 Score=40.86 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=23.1
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 160 CKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|..+|+++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444433 22334444444444444444444444444443
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.81 E-value=0.0019 Score=44.39 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH-----hCCCCCCHhhH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM-----GTGCLPNTQSC 153 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 153 (272)
....++..+...|++++|..+.+.+....+. +...|..+|.+|...|+...|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3444555666667777777777776666433 56666677777777777777777666552 23666666543
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=0.00019 Score=41.61 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
..+.+.|++++|.+.|+++.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555554322 4455555555555555555555555555543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.003 Score=41.48 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHh
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPD--AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP--NATTYNLFFRVFY 126 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 126 (272)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667788888888888877765443 2345556667777788888888887777652210 1112222334666
Q ss_pred hcCChhhHHHHHHHHH
Q 048616 127 WSNDLRSSWNLYCRMM 142 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~ 142 (272)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777765543
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0082 Score=44.54 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (272)
+..+-.....+..+++|++-.. .+.+.++..+.-.|.+.-....+.+.++...+.++.....+.+.-.+.|+.
T Consensus 156 i~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 156 LANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 3333333333555555554432 233445555555566666666666666655444555556666666666666
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLV-----KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEK 206 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (272)
+.|...|++..+..-..+..+.+.++ ..+.-++++..|...+.++...+ ..+....|.-.-+..-.|+..+|.+
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 66666666554432233333333322 23344556666666666665554 3333333433334445677777777
Q ss_pred HHHHHHHc
Q 048616 207 SFLEMIEK 214 (272)
Q Consensus 207 ~~~~~~~~ 214 (272)
.++.|.+.
T Consensus 308 ~~e~~~~~ 315 (366)
T KOG2796|consen 308 QLEAMVQQ 315 (366)
T ss_pred HHHHHhcc
Confidence 77777665
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00093 Score=50.17 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
..+.+++++|+..|.+.++.. +-|++.|..-..+|++.|.++.|++=.+..+..... -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 445677777777777777653 335556666677777777777777766666655322 355677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 135 WNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
.+.|++..+. .|+..+|-.=+...
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 7777766554 56666665555544
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.75 E-value=0.0002 Score=42.08 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK-RLRDASGLMDEMVE 108 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 108 (272)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444455555555555555555555555442 223444455555555555 45555555555443
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.0018 Score=49.09 Aligned_cols=97 Identities=11% Similarity=-0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISP--DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--CYPDAAAYNAAIR 88 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 88 (272)
|...+..+.+.|++++|...|+.+.+..+.. ....+..+..+|...|++++|...|+.+.+.- .+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444443344555555555555555432110 01234445555555555555555555555431 0111233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048616 89 NYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.+...|+.++|..+|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.002 Score=47.67 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=115.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+++.+-.....+..+++|++-. ....+.++..+.-.|.+.-....+++..+...+.++.....|++.-.+.||
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD 227 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD 227 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc
Confidence 3344433344477777776543 334567888888889999999999999998777788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHH-----HHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 96 LRDASGLMDEMVEKGLSPNATTYNLF-----FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
.+.|...|++..+..-..+..+++.+ ...|.-.+++..|...+.+....+ +.+....+.-.-+..-.|+..+|.
T Consensus 228 ~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 228 IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHH
Confidence 99999999977755333344444433 345666788889999998887664 345555555555556678999999
Q ss_pred HHHHHHHHcCCC
Q 048616 171 QLWNDMVEKGFG 182 (272)
Q Consensus 171 ~~~~~~~~~~~~ 182 (272)
+.+..+....+.
T Consensus 307 K~~e~~~~~~P~ 318 (366)
T KOG2796|consen 307 KQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHhccCCc
Confidence 999999887433
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=0.00037 Score=40.93 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKE 73 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 73 (272)
+.+|..+-..+...|++++|+..|++..+.+.. +...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555666666666666666665554322 4455555555555555 45666666555544
No 189
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.02 Score=46.66 Aligned_cols=192 Identities=13% Similarity=0.005 Sum_probs=104.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH-------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTS-------IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (272)
+.-++..-..|...|.+.+....-+...+.|-. ...-|+. +..++.+.++++.++..|.+.....-.|+.
T Consensus 257 it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-- 333 (539)
T KOG0548|consen 257 ITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-- 333 (539)
T ss_pred hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH--
Confidence 334455556777777777777766665555432 2222332 334566678888999999887654333321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (272)
..+....+++.+......-.+... ..-.-.-...+.+.|++..|...|.+++..+ +-|...|....-+|.+
T Consensus 334 -------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 334 -------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 222233344444444333332211 1111122445566677777777777766654 4456666666666677
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.|.+..|..=.+...+.+ ++....|..=..++....++++|.+.|.+.++.
T Consensus 405 L~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776666666555554443 333334444444444455666666666666554
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0073 Score=51.92 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048616 20 YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (272)
....|..++|+.+|.+-.+ |..|=+.|-..|.|++|.++-+.=-.-. -..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 3466888888888887665 3334456667889999988765432221 234566666666667888888
Q ss_pred HHHHHHHH----------HcCC---------CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 100 SGLMDEMV----------EKGL---------SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 100 ~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
++.|++.. ...+ ..|...|.....-+-..|+.+.|+.+|.... -|-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeE
Confidence 88776532 1110 1233344444444455666666766666543 355677777
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 161 KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
|-+|+.++|-++-++- -|....-.+.+.|...|++.+|..+|.+.+
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7888888888776652 244444567888888888888888887654
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.012 Score=44.45 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=43.7
Q ss_pred CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHH
Q 048616 114 NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ---EKVEIALQLWNDMVEKGFGSYILVSDV 190 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (272)
|...|..|..+|...|+++.|..-|.+..+.. .++...+..+..++..+ ..-.++..+++++...+ +.+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44445555555555555555555555444331 22333333333333221 12334445555554443 233333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 191 LFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444555555555555555443
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.66 E-value=0.011 Score=43.07 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH----HHHHHHHHHhhhHHH
Q 048616 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF----RRIKALMELANKQEA 238 (272)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~ 238 (272)
+...|.+.|.+..|..-++.+++. -|+.... ..++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 445566666666666666666654 3333322 335556666665553
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.65 E-value=0.012 Score=43.01 Aligned_cols=179 Identities=10% Similarity=0.034 Sum_probs=94.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDIS--PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
....+...|++.+|.+.|+.+...-+. -.....-.++.++.+.|+++.|...++++.+.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455778888888888887764221 123345556777778888888888888877653221122222223322221
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSP-----NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
....... .....+ -...+..++.-|-......+|...+..+.+. .-.. -..+.+.|.+.|.+..
T Consensus 91 ~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHH
T ss_pred HhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHH
Confidence 1111111 000000 1234566666666666666666655555322 1111 1235567888999999
Q ss_pred HHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHH
Q 048616 169 ALQLWNDMVEKGF--GSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 169 a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
|..-++.+.+.-. +......-.++.++.+.|..+.+.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999988887621 112234566778888888877544
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.003 Score=47.82 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----HHhHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS----QVSFR 224 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~ 224 (272)
..|...+....+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+. .|+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHH
Confidence 3455555555667888888888888887642221 245567788888889999999998888765 232 23333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 225 RIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+...+...|+.++|..+|+++.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667778888899999888888766
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.013 Score=44.37 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC---ChhhHHHHHHHHHhCCCCCCHhhH
Q 048616 77 YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN---DLRSSWNLYCRMMGTGCLPNTQSC 153 (272)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 153 (272)
+-|...|-.|...|.+.|+.+.|..-|.+..+... ++...+..+..++.... .-.++..+|+++...+ +-+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 45788899999999999999999999988887643 25666666666554432 3467888899888775 4466777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777788889999999999999998875
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0026 Score=43.71 Aligned_cols=71 Identities=20% Similarity=0.123 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCcHHhH
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI-----EKGHKPSQVSF 223 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 223 (272)
+...++..+...|+++.|..+...+.... +.+...|..+|.++...|+..+|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445555666777777777777766665 5566667777777777777777777776653 23666666543
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.52 E-value=0.0026 Score=42.22 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHH
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-GLSPNATTYNLFFR 123 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 123 (272)
..|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555433 34444455555544
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.48 E-value=0.004 Score=41.31 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=70.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHh---------------hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMR---------------DEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
|..++..+|.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56789999999999999999999987651 123468899999999999999999999999999875
Q ss_pred -cCCCCCHHHHHHHHHHHHhc
Q 048616 74 -YGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 74 -~~~~~~~~~~~~l~~~~~~~ 93 (272)
-+++.+..+|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 46777888999888765443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.0016 Score=38.62 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
.|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555554322 4445555555555555555555555555544
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.0023 Score=37.95 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=19.1
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444444433332 2223333333333344444444444444443
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.37 E-value=0.016 Score=39.97 Aligned_cols=87 Identities=8% Similarity=-0.039 Sum_probs=48.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
+...|++++|..+|+-+...++ -+..-|..|..++-..+++++|...|......+.. |+..+--...++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3456666666666666665432 24444555555556666666666666555443321 333333345566666666666
Q ss_pred HHHHHHHHh
Q 048616 135 WNLYCRMMG 143 (272)
Q Consensus 135 ~~~~~~~~~ 143 (272)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666554
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.028 Score=39.60 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (272)
..+..+..+.=|++...+-..+-.+ .-|+..--..|..+..+.|+..+|...|++...--+.-|......+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 3344555555566655544333333 35777777788889999999999999998887654555777777888888889
Q ss_pred CChhhHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 129 NDLRSSWNLYCRMMGTG---CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
+++..+...++.+.+.. ..| .+...+.+.+...|...+|+.-|+.....-..|...+ ..-..+.+.|+.+++.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~p--d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSP--DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREAN 213 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCC--CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHH
Confidence 99999999998886653 123 3455667888889999999999998887643333333 3445567788777666
Q ss_pred HHHHHHHHcCCCCcHHhHH
Q 048616 206 KSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~ 224 (272)
.-+..+.+. ..-+...|.
T Consensus 214 aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 214 AQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHHHH-HHhcchhHH
Confidence 544444332 122444554
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.03 Score=38.72 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
+...|++++|..+|.-+...++. +..-|..|..++...+++++|...|......+. -|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44567777777777666655443 455556666666667777777777665543332 2333344455566666666666
Q ss_pred HHHHHHHHH
Q 048616 170 LQLWNDMVE 178 (272)
Q Consensus 170 ~~~~~~~~~ 178 (272)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666554
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.003 Score=49.79 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=133.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHH--H--cCCCC-CHHHHHHHHHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDV----ISYTSIIGGLGLVGQPDKARDVLKEMK--E--YGCYP-DAAAYNAAIRN 89 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~~ 89 (272)
-+++.|+...-..+|+...+-|.. |. .+|..|.++|.-.+++++|+++...=. . .|-+. ...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 378899999999999999987754 33 457777888888899999998864311 1 11111 12233345555
Q ss_pred HHhcCCHHHHHHHHHHH----HHcCCC-CCHHhHHHHHHHHhhcCC--------------------hhhHHHHHHHH---
Q 048616 90 YCIAKRLRDASGLMDEM----VEKGLS-PNATTYNLFFRVFYWSND--------------------LRSSWNLYCRM--- 141 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~--- 141 (272)
+--.|.+++|.-.-.+- .+.|-+ .....+..+...|...|. ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55667777776432221 122211 123344455666654432 22233343321
Q ss_pred -HhCCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH----cCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 048616 142 -MGTGCL-PNTQSCMFLVKLCKRQEKVEIALQLWNDMVE----KGF-GSYILVSDVLFDLLCDMGKLVEAEKSFLEMI-- 212 (272)
Q Consensus 142 -~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-- 212 (272)
...|-. .--..|..+-..|--.|+++.|+...+.-.. .|- ......+..+..++.-.|+++.|.+.++.-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111110 1113455555555567889999887765432 221 2234566778888888999999999887643
Q ss_pred --HcCC-CCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 213 --EKGH-KPSQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 213 --~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
+.|- .....+..+|...|--..++++|+.++++-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222 2233344457778888888888888877643
No 205
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.021 Score=49.18 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=118.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH----HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIG----GLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
....-++...+...++-|+.+-+.- +. +..+...+.. -+.+.|++++|...|-+-... +.|+ .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3445677777888888887776543 22 3333444444 455789999999888777643 2232 245
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
.-|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6667777888888899999999986 56666889999999999999888877654 2221 123456667777778888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+|..+-..... +......+ +-..+++++|.+++..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 87766554332 22222333 44678888888888765
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0022 Score=38.65 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CC-HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DIS-PD-VISYTSIIGGLGLVGQPDKARDVLKEM 71 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (272)
.+|+.+-..|...|++++|+..|++..+. |.. |. ..++..+..++...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555544321 100 11 233444444555555555555555444
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0043 Score=37.34 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCc-HHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GH-KPS-QVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.+++.+...|...|++++|.+.|++..+. |- .|+ ..++..+...+...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665432 11 111 2344446666666777777776666654
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.04 E-value=0.11 Score=41.26 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHhh---cCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKG---LSPNATTYNLFFRVFYW---SNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
+...++-.|-...+++...++++.+...- +.-....-....-++.+ .|+.++|++++..+......++..++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556778888888888888887651 11122222234455666 7888888888888655555777778877
Q ss_pred HHHHHHh---------cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHHHcCCC-
Q 048616 156 LVKLCKR---------QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK-LV---EAEKSF----LEMIEKGHK- 217 (272)
Q Consensus 156 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~----~~~~~~~~~- 217 (272)
+.+.|-. ...+++|...|.+.-+.. |+...--.++..+.-.|. .+ +..++- ....++|..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7776632 224566666666554432 332211112222222332 11 222222 122233332
Q ss_pred --CcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 218 --PSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 218 --p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.|-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 233333457888888888888888888887543
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.11 Score=40.78 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 048616 117 TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC 196 (272)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (272)
+.+.-+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++..++-.. . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44555666677787777777766552 46778888888888888888877765432 1 12356677888888
Q ss_pred hcCCHHHHHHHHHH
Q 048616 197 DMGKLVEAEKSFLE 210 (272)
Q Consensus 197 ~~g~~~~a~~~~~~ 210 (272)
+.|+..+|..+...
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 88888888877766
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.043 Score=43.35 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-HHHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKAL 229 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~ 229 (272)
.++..+..++.+.+++..|+..-+..+..+ ++|....-.=..++...|+++.|+..|+.+++. .|+....+. |+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 356778888899999999999999998887 556555555678899999999999999999885 777777776 6555
Q ss_pred HHHhhhHH-HHHHHHHHHHhc
Q 048616 230 MELANKQE-ALQNLSNKMALF 249 (272)
Q Consensus 230 ~~~~~~~~-~a~~~~~~~~~~ 249 (272)
-.+..... ...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 55555444 446788888653
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.97 E-value=0.036 Score=44.75 Aligned_cols=64 Identities=8% Similarity=-0.005 Sum_probs=45.7
Q ss_pred CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 114 NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT----QSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777788888888888777665 3442 34777777777778888887777777664
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.95 E-value=0.12 Score=41.64 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=73.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDED-ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA-YNAAIR 88 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 88 (272)
.+|-..|+...+..-++.|..+|-++.+.+ +.++..++++++..++ .|+..-|..+|+-=... + ||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHH
Confidence 345555555555555666666666666655 3455555666665544 35555666666543332 1 23322 234455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPN--ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
.+.+.++-..|..+|+..+.. +..+ ...|..+|.--..-|+...+..+-++|.+. -|...+...+..-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 555666666666666643322 0111 344566666556666666665555555443 33443444444433
No 213
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.95 E-value=0.069 Score=37.25 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 100 SGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
.++++.+.+.+++|+...+..++..+.+.|++..... +...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4556666777888888888888888888887655444 4455566666655555433332 223344444444433
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 180 GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 180 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
= . ..+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+.+
T Consensus 88 L-~---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 L-G---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred h-h---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0 0 12356777888999999999988775322 22333557778877777776666666665543
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.94 E-value=0.075 Score=37.54 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=96.3
Q ss_pred CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCccHHHH
Q 048616 112 SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG---FGSYILVS 188 (272)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 188 (272)
.|+..--..|..++.+.|+..+|...|++...--..-|......+.++....+++..|...++++.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 466666677888899999999999999888765556677788888888888999999999998887653 24443 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHH----HHHHHHHHHHhcC
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQE----ALQNLSNKMALFG 250 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~ 250 (272)
-.+.+.+...|++.+|...|+..... .|+...-......+.+.|+.+ +..++++.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~ 227 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSR 227 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 45677888899999999999988876 555544433444455555433 3445666665443
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.069 Score=43.21 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=55.8
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDV---ISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
.+...|+.+-.+|.+.|++++|+..|++..+.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678899999999999999999999998876433 22 35888999999999999999999999875
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.83 E-value=0.2 Score=40.98 Aligned_cols=159 Identities=12% Similarity=0.153 Sum_probs=92.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHhhc
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN--LFFRVFYWS 128 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 128 (272)
+|.-..+..+.+.-++.-++..+. .|+..+.-.++ +--......+|++++++..+.|-. .+. .... ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s~~~~---~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKSQFLQ---HH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchhhhhh---cc
Confidence 444444556666666666666653 34443322222 222345578899999888776321 111 0111 11
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG-SYILVSDVLFDLLCDMGKLVEAEKS 207 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~ 207 (272)
|. .++........|-..+-..+..++-+.|+.++|.+.++++.+.... .+..+...|++++...+.+.++..+
T Consensus 244 g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 11 1111222222333344445666777899999999999999865422 3445677899999999999999999
Q ss_pred HHHHHHcCCC-CcHHhHHH
Q 048616 208 FLEMIEKGHK-PSQVSFRR 225 (272)
Q Consensus 208 ~~~~~~~~~~-p~~~~~~~ 225 (272)
+.+..+...+ .-...|+.
T Consensus 318 L~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTA 336 (539)
T ss_pred HHHhccccCCchHHHHHHH
Confidence 9998654322 22334555
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.1 Score=39.12 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS--PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC-YP-DAAAYNA 85 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ 85 (272)
...|+.-+..+ +.|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+.-. .| -+..+-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34677766655 567788888888887765321 1223344578888888888888888888876421 11 2356666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777888888888888888876
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.18 Score=39.58 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
+.+.-+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 33444555666677776666655442 25777788888888888888776665432 1 13366777888888
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
+.|+..+|..+...+ + + ..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888888777777651 1 1 3456667788888877765544
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.17 Score=38.54 Aligned_cols=145 Identities=11% Similarity=0.111 Sum_probs=90.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
......|++.+|...|+...+.... +...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778999999999888877444 345566788899999999999999988755432222222223334444444444
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHHHHHHHhhh
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK-PSQVSFRRIKALMELANK 235 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~ 235 (272)
+...+-...-.. +-|...--.+...+...|+.++|.+.+-.+.+++.. -|...-..++..+..-|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444433322 335555566777888889999988888777665332 233344456666655553
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.16 Score=38.17 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHHhHHHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGF--GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH--KPSQVSFRRI 226 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l 226 (272)
..|+..+..+ +.|++..|..-|....+... .-....+-.|.+++...|++++|..+|..+.+.-. +.-+.++-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577766665 67789999999988887632 11223445688899999999999999998876511 1122345557
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 227 KALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.......|+.++|...|+++.+.-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 778888899999999999988766
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.59 E-value=0.11 Score=34.50 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 150 TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK 217 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (272)
...+...+.++..+|+.+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445566667777777777777777776543 555666667777777777777777777777777654
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.28 Score=39.15 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=108.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHh
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG---CYPDAAAYNAAIRNYCI---AKRLRDASGLMDEMVEKGLSPNATT 117 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (272)
+..+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566777999999999999999998652 11223333344556667 8999999999999766666678888
Q ss_pred HHHHHHHHhh---------cCChhhHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcC-cHHHHHHHH---HH-HHHcC
Q 048616 118 YNLFFRVFYW---------SNDLRSSWNLYCRMMGTGCLPNTQS---CMFLVKLCKRQE-KVEIALQLW---ND-MVEKG 180 (272)
Q Consensus 118 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~-~~~~a~~~~---~~-~~~~~ 180 (272)
|..+.+.|-. ....++|...|.+.-+. .|+... +..++....... .-.+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888776532 22467788888876554 244433 222333222111 112222222 22 22233
Q ss_pred C---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 181 F---GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 181 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
. ..+-..+..++.+..-.|+.++|.+..+.|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234445567889999999999999999999875
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.41 Score=40.67 Aligned_cols=215 Identities=10% Similarity=0.107 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHH-----
Q 048616 14 NCLIDVYCKDRQ--VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD-AAAYNA----- 85 (272)
Q Consensus 14 ~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----- 85 (272)
+..=.+|.+..+ +-+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+- |.+.. ...|+-
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD 675 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFD 675 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHH
Confidence 333344544443 2233334456667777777643 445566677888888777653 22111 011110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHhhcCChhhHHHHHHH------HHhCCC---CCCHhhHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEK--GLSPNATTYNLFFRVFYWSNDLRSSWNLYCR------MMGTGC---LPNTQSCM 154 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~ 154 (272)
...-+...|+.++-..+.++-.+- +++- =.+....+...|+.++|..+.-+ +.+-+. ..+..+..
T Consensus 676 ~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~ 751 (1081)
T KOG1538|consen 676 YAQEFLGSGDPKEKKMLIRKRADWARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL 751 (1081)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence 112233333333333333222111 1110 11233445556666666654321 111111 22344555
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-----------H
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-----------F 223 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----------~ 223 (272)
.+...+.+...+..|-++|..|-+. ..+++.....+++++|..+.+..-+. .||... |
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhH
Confidence 5555556677778888888877543 35677788899999999888876543 344321 2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 224 RRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.-.-.+|.++|+..+|.++++++...
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22345788888888888888887543
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.038 Score=41.65 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred CcCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----------------ChhHHH
Q 048616 7 KPDIVSYNCLIDVYCKD-----RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG----------------QPDKAR 65 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 65 (272)
+.|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555666666655433 445555555666667777777777777776654321 112356
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 66 DVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+++++|...|+.||-.+-..|+++|.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666666666666666666666666655443
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.21 Score=39.70 Aligned_cols=126 Identities=8% Similarity=0.012 Sum_probs=88.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCC---------CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEK-----GLS---------PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
.+.|.+.|++..|...|++.... +.. .-...++.+..++.+.+++..|+..-......+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34577778888888777765432 111 122356677788899999999999998888775 667777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHc
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV-EAEKSFLEMIEK 214 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~ 214 (272)
...--.++...|+++.|+..|+.+.+.. +.|..+-+.++..-.+..... ...++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7778889999999999999999998875 444455555555544444433 346777777643
No 226
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.47 E-value=0.069 Score=40.62 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDE 105 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (272)
+........+..+. --..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~e---~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE---LFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 54544444444432 134567888899999999999999999998874 56888999999999999999999999988
Q ss_pred HHH-----cCCCCCHHhHHHHHHHHh
Q 048616 106 MVE-----KGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 106 ~~~-----~~~~~~~~~~~~l~~~~~ 126 (272)
+.. .|+.|...+.........
T Consensus 213 l~~~~~edlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 213 LKKTLAEELGIDPAPELRALYEEILR 238 (280)
T ss_pred HHHHhhhhcCCCccHHHHHHHHHHhc
Confidence 765 488898888777776643
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.13 Score=34.01 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=51.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHhhcCC
Q 048616 54 GLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY---NLFFRVFYWSND 130 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~ 130 (272)
+.+..|+.+.|++.|.+.... .+-....||.-..++--.|+.++|+.=+.+..+..-.-+...+ ..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455566666676666666654 2345566666666666666666666666665544211122222 222234555666
Q ss_pred hhhHHHHHHHHHhCC
Q 048616 131 LRSSWNLYCRMMGTG 145 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~ 145 (272)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665554
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.45 E-value=0.15 Score=34.59 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH
Q 048616 154 MFLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~ 175 (272)
..+++.|.+.+.++++..++..
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 3344444444444444444443
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.44 E-value=0.1 Score=39.39 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred CHhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 048616 44 DVISYTSIIGGLGL-----VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA----------------KRLRDASGL 102 (272)
Q Consensus 44 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 102 (272)
|...|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+- .+-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 56667777766643 356777777889999999999999999999875432 233557899
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCCh-hhHHHHHHHHH
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDL-RSSWNLYCRMM 142 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 142 (272)
+++|...|+.||..+-..++.++.+.+.. .+..++.-.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999887765 34555555553
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.25 Score=38.38 Aligned_cols=152 Identities=6% Similarity=-0.100 Sum_probs=86.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
.|+..+|-..++++.+. .+.|...+...=.++.-.|+.+.-...++++... +++-.+..-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45566666666666654 4456666666666777777777777777776644 2211122223344455667777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 135 WNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY---ILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
++.-++..+.+ +.|.-.-.+....+.-.|++.++.++..+-...--..+ ..-|-...-.+...+.++.|+++|+.-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 77777766554 34555566666666667777777776655433210000 111222233344557777777777643
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.40 E-value=0.46 Score=39.62 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=104.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH------hHHHHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKG-LSPNAT------TYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
++...=.||-+.+++.+.+..+.+ +. .+. .|+..+..++. ..+.+.+.++++.+.+. -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 333444688899998888776542 22 221 34444443333 45668899999998776 566665554
Q ss_pred HH-HHHHhcCcHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH-HHH
Q 048616 156 LV-KLCKRQEKVEIALQLWNDMVEKG---FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIK-ALM 230 (272)
Q Consensus 156 l~-~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~ 230 (272)
.- +.+...|++++|.+.++...... .......+--+...+.-..++++|.+.|..+.+.. ..+...|.-+. .++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 43 45678899999999999755321 12333455567777888999999999999998864 34566666543 344
Q ss_pred HHhhhH-------HHHHHHHHHHHh
Q 048616 231 ELANKQ-------EALQNLSNKMAL 248 (272)
Q Consensus 231 ~~~~~~-------~~a~~~~~~~~~ 248 (272)
...++. ++|.+++.++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 555666 788888888654
No 232
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.39 E-value=0.18 Score=34.80 Aligned_cols=52 Identities=15% Similarity=0.008 Sum_probs=26.4
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMF-LVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
.+.++.+++..++..+.-. .|....... -...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666666666443 233222111 112334566666666666665544
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.37 E-value=0.32 Score=37.49 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=126.9
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCCCH------hhHHHHHHHHHhcC-ChhHHHHHHHHHHHc--------CCCCCH---
Q 048616 21 CKDRQVEKAYKIVEKMRDED--ISPDV------ISYTSIIGGLGLVG-QPDKARDVLKEMKEY--------GCYPDA--- 80 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 80 (272)
.+.|+.+.|...+.+..... ..|+. ..|+.-.. ..+.+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46899999999999887642 22332 12333333 33455 888888888776543 122332
Q ss_pred --HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 81 --AAYNAAIRNYCIAKRLR---DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 81 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
.++..++.+|...+..+ +|.++++.+...... .+..+..-+..+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 46677888888877654 455666666544322 34555566777777899999999999998762 223444555
Q ss_pred HHHHH---HhcCcHHHHHHHHHHHHHcCCCccHH-HH-HHHHHH---HHhcC------CHHHHHHHHHHHHH-cCCCCcH
Q 048616 156 LVKLC---KRQEKVEIALQLWNDMVEKGFGSYIL-VS-DVLFDL---LCDMG------KLVEAEKSFLEMIE-KGHKPSQ 220 (272)
Q Consensus 156 l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~li~~---~~~~g------~~~~a~~~~~~~~~-~~~~p~~ 220 (272)
++..+ .... ...+...+..+....+.|... .. ..++.. ..+.+ +++...++++...+ .+.+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55544 3433 345666666655544444432 11 111111 11211 24555555554332 2233344
Q ss_pred HhHHHH-------HHHHHHhhhHHHHHHHHHHH
Q 048616 221 VSFRRI-------KALMELANKQEALQNLSNKM 246 (272)
Q Consensus 221 ~~~~~l-------~~~~~~~~~~~~a~~~~~~~ 246 (272)
.+-.++ ...+.+.++++.|.++|+-.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 443333 33456678899999988853
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.35 E-value=0.39 Score=38.21 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=77.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG 101 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (272)
-.|+++.|.+-|+-|... +..-.--...|.-..-+.|+.+.|.+.-++.-... +--...+...+...+..|+|+.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 357888888888877753 11011112222222345667777777666665442 1223456677777788888888888
Q ss_pred HHHHHHHcC-CCCCHH--hHHHHHHHHh---hcCChhhHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCcHHHHHHHHH
Q 048616 102 LMDEMVEKG-LSPNAT--TYNLFFRVFY---WSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWN 174 (272)
Q Consensus 102 ~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 174 (272)
+++.-.... +.++.. .-..|+.+-. -.-+...|.+.-.+.. .+.|+..- -....+++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 877655332 222211 1111111100 0112333333322222 22344322 2223355666666666666666
Q ss_pred HHHHcCCCc
Q 048616 175 DMVEKGFGS 183 (272)
Q Consensus 175 ~~~~~~~~~ 183 (272)
.+-+....|
T Consensus 288 ~aWK~ePHP 296 (531)
T COG3898 288 TAWKAEPHP 296 (531)
T ss_pred HHHhcCCCh
Confidence 666553333
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.28 E-value=0.54 Score=39.23 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048616 50 SIIGGLGLVGQPDKARDVLKEMKEYG-CYPDA-----AAYNAAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
.++...+-.||-+.+++.+.+..+.+ +.-.. -.|+..+..++. ..+.+.|.++++.+.+. .|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34445566799999999998877643 22111 234444444433 45678899999999987 56776665
Q ss_pred HH-HHHHhhcCChhhHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH-H
Q 048616 120 LF-FRVFYWSNDLRSSWNLYCRMMGTGC---LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD-L 194 (272)
Q Consensus 120 ~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~ 194 (272)
.. .+.+...|++++|.+.|++...... +.....+--+.-.+.-..++++|.+.|..+.+.. ..+..+|.-+.- +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 43 3566778999999999997653211 1122334445566778899999999999999875 445555544333 3
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 048616 195 LCDMGKL-------VEAEKSFLEMI 212 (272)
Q Consensus 195 ~~~~g~~-------~~a~~~~~~~~ 212 (272)
+...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4567777 88888887664
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.27 E-value=0.35 Score=39.88 Aligned_cols=105 Identities=14% Similarity=0.038 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
.+.++..+-+.|-.+.|+++-++-.. -.....+.|+++.|.++.+++ ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 45555555555555555554332211 123344455555555443322 244455555555555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
.|+++-|++.|++.. -+..++-.|.-.|+.+...++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555555555554432 1333444444455555544444444433
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.26 E-value=0.2 Score=34.01 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC
Q 048616 50 SIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN 129 (272)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (272)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+..+.+.. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34555555555566666666655554 245555566666665542 2223333321 1 12233344555666666
Q ss_pred ChhhHHHHHHHH
Q 048616 130 DLRSSWNLYCRM 141 (272)
Q Consensus 130 ~~~~a~~~~~~~ 141 (272)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.25 E-value=0.028 Score=29.43 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+..+...|.+.|++++|+++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 239
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.48 Score=37.92 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=94.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhH---HHHH-------
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSC---MFLV------- 157 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~------- 157 (272)
.++.-.|+.++|.+.--...+.... +......--.++...++.+.+...|++....+ |+...- ....
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 3455667777777776666655221 22222222233445667777888887776553 443221 1111
Q ss_pred ---HHHHhcCcHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHHHHHH
Q 048616 158 ---KLCKRQEKVEIALQLWNDMVEK---GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ-VSFRRIKALM 230 (272)
Q Consensus 158 ---~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 230 (272)
.-..+.|++..|.+.|.+.+.. +..++...|........+.|+.++|+.--++..+. .|.. ..|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHH
Confidence 2234678888888888887755 34566666766666777888888888887777653 2111 1122234456
Q ss_pred HHhhhHHHHHHHHHHHHhcC
Q 048616 231 ELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~ 250 (272)
...+++++|.+-+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66778888888887766544
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.17 Score=41.69 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
..+.++..+-+.|..+.|+++.. |+ ..-.....+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 36667777777777777776642 22 23456667889999998775443 47789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQ 171 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (272)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.++..++.+.....| -++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987643 5667778888999888888887777665 24555566667788888877
Q ss_pred HHHH
Q 048616 172 LWND 175 (272)
Q Consensus 172 ~~~~ 175 (272)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.35 Score=35.91 Aligned_cols=195 Identities=13% Similarity=0.080 Sum_probs=99.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD------VISYTSIIGGLGLVGQPDKARDVLKEMK----EYGCYPDA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 80 (272)
..|..-..+|....++++|...+.+..+- ...+ ...|...+...-....+.++..++++.. +.| .|++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccch
Confidence 45666667787888888888877666531 1112 2234444444455566667777776654 333 3443
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHc---CCC--CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCCC-
Q 048616 81 AAYNA-AIRNYCIAKRLRDASGLMDEMVEK---GLS--PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLPN- 149 (272)
Q Consensus 81 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 149 (272)
..... -..-....-++++|+++|++.... +-. --...+...-..+++.+.+.+|-..+.+-... .--++
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 32210 011123445667777777665422 100 01223444555666666666655544332110 00111
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 150 TQSCMFLVKLCKRQEKVEIALQLWNDMVEKG---FGSYILVSDVLFDLLCDMGKLVEAEKSF 208 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (272)
-..|...|-.+....++..|+..++.--+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1234445555556667777777776633321 123445556666665 456666666554
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.13 E-value=0.14 Score=39.07 Aligned_cols=78 Identities=5% Similarity=0.055 Sum_probs=50.3
Q ss_pred HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCCCccHHHHHH
Q 048616 116 TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE-----KGFGSYILVSDV 190 (272)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 190 (272)
.++..++..+...++.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566666666777777777777666653 45666677777777777777777766666554 366666666555
Q ss_pred HHHH
Q 048616 191 LFDL 194 (272)
Q Consensus 191 li~~ 194 (272)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.11 E-value=0.39 Score=35.90 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=100.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYG--CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
...|+..+. -.+.|++++|.+.|+.+..+. -+-...+.-.++.++.+.+++++|+..+++.....+......|-.-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444443 446788888888888888652 12234455666777788888888888888888775444444555555
Q ss_pred HHHhhc-------CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048616 123 RVFYWS-------NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLL 195 (272)
Q Consensus 123 ~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (272)
.+++.- ++...+..-+..+. .++.-|=.+.-...|..-+..+...=-..+ ..+.+.|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E----m~IaryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDALAGHE----MAIARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 555531 22222222222221 111111111112222222222211100000 2456677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHh---HHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 196 CDMGKLVEAEKSFLEMIEKGHKPSQVS---FRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.+.|.+..|..-+++|++. .+-+..+ +-.+..+|...|-.++|...-+-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7888888888888888776 2222222 23356677777777777766655544
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.08 E-value=0.4 Score=35.82 Aligned_cols=81 Identities=14% Similarity=0.020 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDI--SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
...|+.-+. -.+.|++++|.+.|+.+....+ +-...+...++-++.+.++++.|+..+++....-......-|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 345555554 4589999999999999987532 2234556667778889999999999999998764333334444445
Q ss_pred HHHH
Q 048616 88 RNYC 91 (272)
Q Consensus 88 ~~~~ 91 (272)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5444
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.99 E-value=0.4 Score=35.01 Aligned_cols=225 Identities=15% Similarity=0.062 Sum_probs=142.9
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCYPDAAAYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (272)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46666677777666654322 13556677777777888888888877777652 23345566666677777777788888
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHH-HHhhcCChhhHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 101 GLMDEMVEKGLSPNATTYNLFFR-VFYWSNDLRSSWNLYCRMMGTGC--LPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
+.+.........+ ......... .+...++++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877654332 122222333 67788888888888888754221 1223334444444667788888888888877
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS-QVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6642213566677777777888888888888887765 333 3334444444445566777777777766544
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.95 E-value=0.034 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDE 39 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 39 (272)
|..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.61 Score=36.42 Aligned_cols=154 Identities=8% Similarity=-0.004 Sum_probs=107.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY---GCYPDAAAYNAAIRNYCIAKRLRD 98 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 98 (272)
..|+..+|-..++++++. .|.|...+...=.+|.-.|+.+.-...++++... +++....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356777888888888875 4557788888888999999999988999988754 222222333344455678999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT---GCLPNTQSCMFLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (272)
|++.-++..+.+.. |...-.+....+..+++..++.++..+-... +-..-...|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999999887643 7777888889999999999998887654221 1000011122222234456899999999976
Q ss_pred HH
Q 048616 176 MV 177 (272)
Q Consensus 176 ~~ 177 (272)
-.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.78 E-value=0.32 Score=32.29 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=68.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcC
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS---CMFLVKLCKRQE 164 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 164 (272)
-+....|+++.|++.|.+.+..-++ ....||.-..++--.|+.++|++-+++..+..-.-+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567889999999999998876433 778899999999999999999998888766422223333 333334566788
Q ss_pred cHHHHHHHHHHHHHcC
Q 048616 165 KVEIALQLWNDMVEKG 180 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~ 180 (272)
+.+.|..=|...-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887776665
No 249
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.70 E-value=0.63 Score=39.62 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=109.1
Q ss_pred CCCCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH-----HHHHHHhcCChhHHHHHHHHHHHc-
Q 048616 1 MREMGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTS-----IIGGLGLVGQPDKARDVLKEMKEY- 74 (272)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~- 74 (272)
|+++|-.|+..... ..++-.|++.+|-++|.+--..+- -...|+- ...-+...|+.++-..+.++-.+.
T Consensus 626 ~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 626 RKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 45677778876543 445667888888888865322110 0111111 222334445444444444333221
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCCC---CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 048616 75 -GCYPDAAAYNAAIRNYCIAKRLRDASGLMD------EMVEKGLSP---NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 75 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
+++-. .+...++...|+.++|..+.- -+.+.+-+. +..+...+..-+.+...+.-|-++|..|-..
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11111 223455667788888876532 222222222 3445555555566677788899999887432
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 145 GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI-----------LVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
..++......++|++|..+-+...+. .+++ .-|..--.+|.+.|+-.+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34666777889999999887765443 2332 1223344567788888888888887754
Q ss_pred c
Q 048616 214 K 214 (272)
Q Consensus 214 ~ 214 (272)
.
T Consensus 846 n 846 (1081)
T KOG1538|consen 846 N 846 (1081)
T ss_pred h
Confidence 4
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.66 E-value=0.76 Score=35.74 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHhhcCCh
Q 048616 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI--A----KRLRDASGLMDEMVEKGLS---PNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 131 (272)
+++.+.+++.|.+.|++.+..+|-+....... . .....|.++|+.|.+..+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788889999998887766554333332 1 2356788999999987432 344455555443 33333
Q ss_pred ----hhHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCc--HHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048616 132 ----RSSWNLYCRMMGTGCLPNT--QSCMFLVKLCKRQEK--VEIALQLWNDMVEKGFGSYILVSDVLF 192 (272)
Q Consensus 132 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (272)
+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 5567788888877766543 334444443332222 457888999999999888776665543
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.60 E-value=0.44 Score=33.93 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD--AAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATTYNL 120 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 120 (272)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+-.++....-.+++..+...+.+.... |..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567778888888888888888888776543333 335566777777788888887777665533 22111111111
Q ss_pred HHH--HHhhcCChhhHHHHHHHH
Q 048616 121 FFR--VFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 121 l~~--~~~~~~~~~~a~~~~~~~ 141 (272)
... .+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 234467788877777655
No 252
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.54 E-value=0.48 Score=38.02 Aligned_cols=240 Identities=13% Similarity=0.039 Sum_probs=135.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHH--Hhh--CCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHH-H---HHcCCC-CCH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEK--MRD--EDIS-PDVISYTSIIGGLGLVGQPDKARDVLKE-M---KEYGCY-PDA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~--~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~---~~~~~~-~~~ 80 (272)
..|..|-++|.-.+++++|++.-.. ... .|-+ -.......|.+.+--.|.+++|+-.-.+ + .+.|-. ...
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 4566777777778889998886432 111 0100 0122233344444455666666543221 1 122211 123
Q ss_pred HHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHhhcCChhhHH
Q 048616 81 AAYNAAIRNYCIAKR--------------------LRDASGLMDEMVEK----GLS-PNATTYNLFFRVFYWSNDLRSSW 135 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 135 (272)
..+..+...|...|+ ++.|.++|.+=++. |-. ..-..|..|-..|.-.|+++.|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 455556666665442 33344444332211 100 01234555666666778898887
Q ss_pred HHHHHH----HhCCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc----C-CCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 136 NLYCRM----MGTGCL-PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK----G-FGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 136 ~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
..-+.- .+.|-+ .....+..+..++.-.|+++.|.+.|+..... | -.......-+|...|.-...+++|+
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 665432 222322 23456778888888999999999988775432 2 1222333445777777778888888
Q ss_pred HHHHHHHHc-----CCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 206 KSFLEMIEK-----GHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 206 ~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.++.+-+.. ...-....+.+|..++...|..++|..+...-++..
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 887654321 112344567778888888888888888777655443
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.52 E-value=0.45 Score=32.20 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=32.7
Q ss_pred HhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 56 GLVGQPDKARDVLKEMKEYGC--YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.+.|++++|.+.|+.+..+-. +-.....-.++.+|.+.+++++|...+++.++.++.....-|-..+.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 345555555555555554310 1122334445555555555555555555555554332233333333333
No 254
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.36 Score=37.22 Aligned_cols=128 Identities=10% Similarity=0.082 Sum_probs=78.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHh
Q 048616 51 IIGGLGLVGQPDKARDVLKEMK----------EYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATT 117 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 117 (272)
|.++|.....|+.-....-++- ..|.+.+..+...++..-....+++.++..+-++... -..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 4555666666655444432332 2234445555555565555567778887777777643 11222222
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
+ +.++. +-.-++++++.++..=++.|+-||..+++.+++.+.+.+++.+|.++.-.|....
T Consensus 105 ~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 105 H-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred H-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 22222 2334667777777777788888888888888888888888888888777776554
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.48 E-value=0.43 Score=31.76 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=77.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG 101 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (272)
-.|.+++..++..+...+. +..-+|-+|--....-+-+-..++++.+ |---|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHH
Confidence 3566666677766665532 3344444554444444444433333333 2112221 2344443333
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048616 102 LMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF 181 (272)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (272)
.+-.+ | .++......+..+...|.-+...+++..+...+ .++......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33222 1 145566778888889999999999998886543 67788888899999999999999999999888875
Q ss_pred C
Q 048616 182 G 182 (272)
Q Consensus 182 ~ 182 (272)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.41 E-value=1.1 Score=35.87 Aligned_cols=190 Identities=13% Similarity=0.037 Sum_probs=115.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGG--LGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRNYCIAKRLRD 98 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 98 (272)
.|+-..|.+.-.+..+. +.-|......++.+ -.-.|+++.|.+-|+.|... |.... ..-|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 46666776666554322 22244444444443 33469999999999999853 32222 2223333457889999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC-CCCCHh--hHHHHHHH--HHh-cCcHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG-CLPNTQ--SCMFLVKL--CKR-QEKVEIALQL 172 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~--~~~-~~~~~~a~~~ 172 (272)
|.++-++.-..... -...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+ -.. .-+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99888887766433 35677889999999999999999998765432 233332 12222222 111 2245566655
Q ss_pred HHHHHHcCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 173 WNDMVEKGFGSYILV-SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
-.+..+. .|+..- -..-..++.+.|+..++-.+++.+=+....|+
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 5554443 444322 12334678899999999999998877655554
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.16 Score=39.02 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 048616 4 MGVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDED---ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (272)
.|.+.++.+...++..-....+++.++..+-+++... ..|+. +-...++.+.+ =++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3555666666666666666778888888877776431 12222 12223333332 3577888888888888999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.+++.+|..+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888777654
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.89 Score=34.80 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=98.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (272)
.......|++.+|..+|+...+..- -+...--.+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3445678899999999999887642 345666678889999999999999999887552222333333445666666666
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF-GSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 201 (272)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..+++.+.--|.-
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 6666666555443 33666667777888889999999887777665532 22334445666666555533
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.38 E-value=0.32 Score=34.63 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN--ATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566777778888888888888888776643332 2345566677777777777777766653
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.37 E-value=0.57 Score=32.41 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=10.0
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 048616 90 YCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (272)
+.+.|++.+|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44445555555555554443
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.36 E-value=1.2 Score=36.25 Aligned_cols=132 Identities=9% Similarity=0.154 Sum_probs=88.3
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048616 115 ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG-CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD 193 (272)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (272)
...|...+....+..-.+.|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+.-... ++.+....+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456667777777777888888888887776 5677777888877764 56777788888764443 1223333345666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 194 LLCDMGKLVEAEKSFLEMIEKGHKPS--QVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.+...++-+.|..+|+..+++ +..+ ...|..++..=..-|+...+..+-++|.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777788888888888855443 2222 356777777777777777777776666653
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.31 E-value=1.7 Score=37.56 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=90.8
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCC--------HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRD-EDISPD--------VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY 77 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (272)
.|-...|..+.......-.++.|+..|-+... .|++.- ...-..=+. +--|++++|.+++-++-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 46677888887777777777888777765543 222210 000011111 223778888887777655432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHhhcCChhhHHHHHHH-------------HH
Q 048616 78 PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS--PNATTYNLFFRVFYWSNDLRSSWNLYCR-------------MM 142 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~~ 142 (272)
.+..+.+.|++-...++++.-. .+.. .-...|+.+...+.....|++|.+.|.. +.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE 836 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 2334444455444444332210 0000 0012333333333333333333333322 10
Q ss_pred --------hCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 143 --------GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 143 --------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
...++-+....-.+...+...|.-++|.+.+-+ .+ .| ..-+..|....++.+|.++.+..
T Consensus 837 ~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s-~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 837 LFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RS-LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---cc-Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 012233445555666777777777777665532 22 22 23456677777777777776654
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=1.6 Score=37.79 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=102.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 42 SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCY--------PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (272)
.|.+..|..+.......-+++-|...|-+.... |++ .+...-.+=+.+| -|++++|++++-++-...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 577888888887777777777777776655431 221 1112222223333 388999999987776542
Q ss_pred CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC-C-------------CCCCHhhHHHHHHHHHhcCcHHHHHHHHHH---
Q 048616 113 PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT-G-------------CLPNTQSCMFLVKLCKRQEKVEIALQLWND--- 175 (272)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 175 (272)
..|..+.+.|+|-.+.++++.--.. + .-.+...|......|...|+.+.-.+.+-.
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 2345555566665555555421000 0 011222344444444444444332222211
Q ss_pred ---HHH--cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 176 ---MVE--KGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 176 ---~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+.. ..++-+....-.+.+++.+.|.-++|.+.+-+- +. | ...+..|...+++.+|.++-++.
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 123445556667778888888888888776443 11 1 23566788888888888877764
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.25 E-value=0.66 Score=32.49 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 33 VEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (272)
++.+.+.+++|+...+..+++.+.+.|++.. +.++.+.++-+|.......+-.+. +....+.++=-+|...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 3344445566666666666666666665433 233333333344333332221111 1222333333333322
Q ss_pred CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 113 PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112344555555666666666655543221 11122334455555555444444444433
No 265
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.19 E-value=0.61 Score=31.76 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=10.0
Q ss_pred HhcCcHHHHHHHHHHHHHc
Q 048616 161 KRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (272)
...|++.+|.++++++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3455555555555555444
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.13 E-value=0.63 Score=31.53 Aligned_cols=79 Identities=8% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLS--PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
-.....+.|++++|.+.|+.+...-+. -...+-..++.+|.+.+++++|...+++.++....-...-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456679999999999998876221 134555678889999999999999999988875443345566666665543
Q ss_pred C
Q 048616 164 E 164 (272)
Q Consensus 164 ~ 164 (272)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.09 E-value=1.2 Score=34.64 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh--cC----ChhhHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCc-
Q 048616 96 LRDASGLMDEMVEKGLSPNATTYNLFFRVFYW--SN----DLRSSWNLYCRMMGTGC---LPNTQSCMFLVKLCKRQEK- 165 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 165 (272)
+++...+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556788899999998777776553333333 22 34668899999987632 2344455555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 048616 166 ---VEIALQLWNDMVEKGFGSYIL--VSDVLFDLLCDMGK--LVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230 (272)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (272)
.+.++.+|+.+.+.|+..+-. ..+.++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 356778888888877755433 33333333322222 457889999999999998888887654443
No 268
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.04 E-value=1.2 Score=34.15 Aligned_cols=137 Identities=9% Similarity=0.109 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHhhcCC--hhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 95 RLRDASGLMDEMVE-KGLSPNATTYNLFFRVFYWSND--LRSSWNLYCRMMG-TGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 95 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
.+.+|+++|+.... ..+--|......+++......+ ...-.++.+-+.. .+..++..+...++..+++.+++....
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663221 1233466777777777766322 2223333333322 234677788888889999999999999
Q ss_pred HHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHcCCCCcHHhHHHHHHHHH
Q 048616 171 QLWNDMVEK-GFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM-----IEKGHKPSQVSFRRIKALME 231 (272)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~~~~l~~~~~ 231 (272)
++|...... +...|...|..+|+.....|+..-...+.++- .+.|+..+...-.++-+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 988877655 56778888889999999999988776666542 23345555554444444443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.03 E-value=0.081 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEM 106 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~ 106 (272)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 270
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.5 Score=35.30 Aligned_cols=157 Identities=13% Similarity=0.001 Sum_probs=94.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------------HHH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA-------------YNA 85 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ 85 (272)
++.-.|++++|.+.--...+.+.. +....-.--.++.-.++.+.+...|++....+ |+-.. +..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 444567788887777666665322 33322222234445677778888887776543 33221 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEK---GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (272)
-.+-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.--+.....+ ..-...+..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHH
Confidence 223355778888888888888755 344555666666677788888888887777665432 0111223333345556
Q ss_pred cCcHHHHHHHHHHHHHc
Q 048616 163 QEKVEIALQLWNDMVEK 179 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~ 179 (272)
.++|++|.+-++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77888888888776655
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.98 E-value=1.6 Score=36.07 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=56.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHH
Q 048616 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV-SFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 182 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 260 (272)
.+-..+-..+..++.+.|+.++|.+.+++|.+....-|.. ....|+.++...+.+.++..++.+-.+... .+.-...|
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~Y 334 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICY 334 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHH
Confidence 3334444567778889999999999999998753221222 333489999999999999999998754332 12334556
Q ss_pred HHhh
Q 048616 261 LAEM 264 (272)
Q Consensus 261 ~~ll 264 (272)
...|
T Consensus 335 TaAL 338 (539)
T PF04184_consen 335 TAAL 338 (539)
T ss_pred HHHH
Confidence 5554
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.93 E-value=0.079 Score=26.30 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEK 35 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~ 35 (272)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555544
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.90 E-value=0.54 Score=29.62 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 10 IVSYNCLIDVYCKDRQVE--KAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
-..|++--..|....+.+ +..+-++.+...++.|++.+....+++|.+.+++..|.++|+-++..
T Consensus 8 ~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 8 DEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333444444444433333 45555666666666667777777777777777777777777666543
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.86 E-value=0.89 Score=31.94 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=51.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHh-hHHHHHH--HHHhcCcHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNAT-TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQ-SCMFLVK--LCKRQEKVE 167 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~ 167 (272)
+.+..++|+.-|.++.+.|...=+. ...-......+.|+-..|...|++.-.....|-.. -...+=. .+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3344555555555555543321000 11111223344555555555555554332222221 1111111 123455555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
....-.+.+...+-+.-...-..|.-+-.+.|++.+|..+|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555554443332222223334444445566666666666655543
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=1.2 Score=33.20 Aligned_cols=196 Identities=14% Similarity=0.050 Sum_probs=105.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCC
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA------AYNAAIRNYCIAKRLRDASGLMDEMV----EKGLSPN 114 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 114 (272)
...|..-..+|...+++++|...+.+..+- .+.+.. .|...+-..-....+.++..++++.. +.| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 345666777888889999998888777632 122222 23333333444555666666666554 223 344
Q ss_pred HHhHH-HHHHHHhhcCChhhHHHHHHHHHh---CC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCcc
Q 048616 115 ATTYN-LFFRVFYWSNDLRSSWNLYCRMMG---TG--CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK----GFGSY 184 (272)
Q Consensus 115 ~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 184 (272)
...-. --..-...+.++++|+++|++... .+ ...-...+...-+.+.+...+++|-..+.+-... .-.++
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 33211 011123456677777777776532 11 1111233455556667777777766555443211 11111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 185 -ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG---HKPSQVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 185 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
-..|...|-.+....++..|.+.++.--+.+ -.-+..+...|+.+|- .|+.+++..++
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 1234455556667778999999998754332 1224456666887776 45666665543
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.78 E-value=1.1 Score=32.60 Aligned_cols=202 Identities=15% Similarity=0.055 Sum_probs=130.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE-DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 456666777777788888888888777652 223355566667777777778888888888887654333 122222223
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC
Q 048616 89 -NYCIAKRLRDASGLMDEMVEKGL--SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP-NTQSCMFLVKLCKRQE 164 (272)
Q Consensus 89 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 164 (272)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 67788888888888888755321 1123334444444667778888888888876653 22 3566777777777788
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.++.+...+......... ....+..+...+...+..+++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888877765322 2233333444444667788888888777665
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.76 E-value=1.4 Score=33.73 Aligned_cols=147 Identities=11% Similarity=0.098 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHhHHHHHH
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKE-YGCYPDAAAYNAAIRNYCI-AK-RLRDASGLMDEMVEK-GLSPNATTYNLFFR 123 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 123 (272)
|..++. +...+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555554 34456778888874332 3355677888888877766 22 233333444444432 44567777888999
Q ss_pred HHhhcCChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH-----HHHcCCCccHHHHHHHHHHHHh
Q 048616 124 VFYWSNDLRSSWNLYCRMMGT-GCLPNTQSCMFLVKLCKRQEKVEIALQLWND-----MVEKGFGSYILVSDVLFDLLCD 197 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~~ 197 (272)
.++..++|.+.+++++..... +..-|...|..+|+.....|+..-...+.++ +.+.++..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999999887654 5566888899999999999998887777765 3345666666665555554443
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.68 E-value=1 Score=31.69 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=83.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh---HH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAY-NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT---YN 119 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~ 119 (272)
+...|..-++ +.+.+..++|+.-|.++.+.|...-+..- -.......+.|+...|...|+++-.....|-..- -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555555 34566677888888888776654333221 2233445667888888888888776544443321 11
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS 183 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (272)
--...+..+|.++......+-+...+-+.-...-..|--+.-+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1223456677788777777777555534444445556566667888888888887776543333
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=3.1 Score=36.70 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=96.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
+.+.+.|++++|...|-+-... +.| ..++.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3455789999999888776543 232 23666677777888888899999999874 5566678999999999998
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
+-.++.+... .|.. ..-....+..+-+.+-.++|..+-..... .......++ -..+++++|.+++..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8877776554 3321 11245567777777777777766654422 333444444 3567888988888765
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.41 E-value=0.54 Score=29.30 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048616 28 KAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (272)
++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555666666666666666666666666666554
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=94.03 E-value=2.9 Score=34.39 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHhhC-CCCCC-HhhHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCC
Q 048616 14 NCLIDVYCKD-----RQVEKAYKIVEKMRDE-DISPD-VISYTSIIGGLGL---------VGQPDKARDVLKEMKEYGCY 77 (272)
Q Consensus 14 ~~li~~~~~~-----g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~ 77 (272)
...+.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4555554442 2356788888888721 22333 3334333333221 233456777777777765 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH---hhHH
Q 048616 78 PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT---QSCM 154 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 154 (272)
.|+.....+..+..-.++++.|...|++....++. ...+|....-...-.|+.++|.+.+++..+. .|.. ....
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHH
Confidence 57777777777777778889999999888877532 4555555555667788888888888886554 3332 2333
Q ss_pred HHHHHHHhcCcHHHHHHHHHH
Q 048616 155 FLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~ 175 (272)
..+..|+.. .++.+..++-+
T Consensus 413 ~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCC-chhhhHHHHhh
Confidence 334455443 45666666543
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.03 E-value=1.1 Score=32.39 Aligned_cols=81 Identities=10% Similarity=0.045 Sum_probs=63.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHhhcC
Q 048616 53 GGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK---GLSPNATTYNLFFRVFYWSN 129 (272)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 129 (272)
-.+.+.|+ +.|.+.|-++...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.+
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 34555554 678888989988776667777777777666 57889999999888754 33678999999999999999
Q ss_pred ChhhHH
Q 048616 130 DLRSSW 135 (272)
Q Consensus 130 ~~~~a~ 135 (272)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999885
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.58 E-value=4.3 Score=34.88 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHH--HH-HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSII--GG-LGLVGQPDKARDVLKEMKE-------YGCYPDAAAYNAAIRNYCIAK- 94 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 94 (272)
...|...++...+.|.. ........+ .+ +...+|.+.|+.+|+...+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888777632 222121122 22 4466789999999998876 44 3335566777776643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh-cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCcHH
Q 048616 95 ----RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW-SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK--RQEKVE 167 (272)
Q Consensus 95 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 167 (272)
+.+.|..++....+.|. |+...+-..+..... ..+...|.++|......|.. ....+..++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 66779999988888875 355544333333333 35678899999998888743 2222222222221 334778
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
.|..++...-+.|....... ...+..+.. ++++.+.-.+..+.+.|
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 88888888887772222222 222223333 66666655555554443
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.12 E-value=0.31 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMR 37 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 37 (272)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555555555555555543
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.98 E-value=3.9 Score=32.59 Aligned_cols=225 Identities=12% Similarity=0.074 Sum_probs=125.2
Q ss_pred hcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHH-HH---HHcC-CCCCHHHHHHHHHHHHhcC
Q 048616 22 KDRQVEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPDKARDVLK-EM---KEYG-CYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~-~~~~~~~~~~l~~~~~~~~ 94 (272)
...+.++|+..|..-..+ +..-.-.++..+..+.++.|.+++++..-- +| .+.. -..--..|..+..++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777787777665543 111122356666677777787776654321 11 1110 0011234455555555555
Q ss_pred CHHHHHHHHHHHHHc-CCCCC---HHhHHHHHHHHhhcCChhhHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCc
Q 048616 95 RLRDASGLMDEMVEK-GLSPN---ATTYNLFFRVFYWSNDLRSSWNLYCRMMGT-----GCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 165 (272)
++.+++.+-..-... |..|. -....++-.+....+.++++++.|+...+. +......++..+-..|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 566666555444332 22221 122334556677777888888888876442 112234567788888888888
Q ss_pred HHHHHHHHHHHHHc----CCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHH----HHHHHHH
Q 048616 166 VEIALQLWNDMVEK----GFGSYILVSD-----VLFDLLCDMGKLVEAEKSFLEMIEKGH-KPSQVSFR----RIKALME 231 (272)
Q Consensus 166 ~~~a~~~~~~~~~~----~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~----~l~~~~~ 231 (272)
+++|.-+.....+. ++..-..-|. .+.-++...|...+|.+.-++..+..+ .-|..++. .+...|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 88887766654432 2222222222 234456677888788877776543311 12333333 4677888
Q ss_pred HhhhHHHHHHHHHHH
Q 048616 232 LANKQEALQNLSNKM 246 (272)
Q Consensus 232 ~~~~~~~a~~~~~~~ 246 (272)
..|+.+.+..-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888877666653
No 286
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=6 Score=34.61 Aligned_cols=110 Identities=9% Similarity=-0.038 Sum_probs=77.6
Q ss_pred CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048616 114 NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD 193 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (272)
...+.+--+..+...|+-.+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+..+. +.-|..++.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 34455556667778888888888877664 67888998889999999999987776654331 345677889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHH
Q 048616 194 LLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL 242 (272)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (272)
+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++
T Consensus 753 ~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 99999999999998876521 11 244455555555555443
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.86 E-value=0.52 Score=22.67 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
+|..+..++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555554444
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.83 E-value=3.6 Score=31.80 Aligned_cols=199 Identities=10% Similarity=0.026 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCC-----HhhHHHHHHHHHhcCChh---HHHHHHHHHHHcC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDE--------DISPD-----VISYTSIIGGLGLVGQPD---KARDVLKEMKEYG 75 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~ 75 (272)
.||.-...+.+..+++.|..++++..+. ...|+ ..++..++.++...+..+ +|..+++.+....
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 4555555554443888888877765432 12222 245667778888777655 5566666665442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh--cCChhhHHHHHHHHHhCCCCCCHh-h
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW--SNDLRSSWNLYCRMMGTGCLPNTQ-S 152 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~ 152 (272)
.-.+.++..-+..+.+.++.+.+.+.+.+|+..-.. ....+...+..+.. ......+...+..+....+.|... .
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHH
Confidence 223556656677777789999999999999976221 33445555555422 233456667776665555555553 1
Q ss_pred HHH-HHH-H--HHhcC------cHHHHHHHHHHHHHc-CCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 048616 153 CMF-LVK-L--CKRQE------KVEIALQLWNDMVEK-GFGSYILVSDVL-------FDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 153 ~~~-l~~-~--~~~~~------~~~~a~~~~~~~~~~-~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~ 212 (272)
... ++. . ..+.+ .++...+++..+... +.+.+..+-.++ ...+.+.+++++|.++|+-..
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111 111 1 11211 245555555543332 223333332222 233457899999999998543
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.80 E-value=0.19 Score=24.59 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 048616 79 DAAAYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a 99 (272)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.78 E-value=0.42 Score=24.20 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.71 E-value=6 Score=34.06 Aligned_cols=181 Identities=17% Similarity=0.111 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHhhc
Q 048616 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRN-----YCIAKRLRDASGLMDEMVE-------KGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 128 (272)
...+.++++...+.|. ......+..+ +....+.+.|+..|+.... .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4678899998888763 3332223322 4456789999999998877 44 233455666677664
Q ss_pred C-----ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH--hcCC
Q 048616 129 N-----DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR-QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC--DMGK 200 (272)
Q Consensus 129 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~ 200 (272)
. +.+.|..++......| .|+.......+.-... ..+...|.++|...-+.|.. ....+..+..... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 6677999999988887 4455444333333322 34678999999999888843 2222222222111 3347
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Q 048616 201 LVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGP 251 (272)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (272)
.+.|..++++..++|......... .+..+.. +..+.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~-~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLG-AFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHH-HHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 889999999999887332222222 2222222 555555555555555553
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.69 E-value=0.52 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 188 SDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
|..+..++...|++++|...|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.60 E-value=0.051 Score=37.08 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=25.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMD 104 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (272)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433445555555555555544444444443
No 294
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.53 E-value=1.1 Score=32.72 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHHhHHHHHH
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG--HKPSQVSFRRIKA 228 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~ 228 (272)
|...-++.+.+.+.+.+++...++-.+.+ +.+..+-..+++.++-.|++++|..-++-.-... ..+-..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34555677778899999999988877775 5566666778999999999999998777665431 2233344444443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.43 E-value=0.22 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=12.9
Q ss_pred CHHhHHHHHHHHhhcCChhhHH
Q 048616 114 NATTYNLFFRVFYWSNDLRSSW 135 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~ 135 (272)
+...|+.+...|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666665553
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.34 E-value=0.66 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
+..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555555444
No 297
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.27 E-value=3.9 Score=31.24 Aligned_cols=57 Identities=7% Similarity=-0.071 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
-|.+++..++|.+++...-+--+.--+..+.....-|-.|.+.+++..+.++-..-.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345555555555555444433322112223333333444555555555555544443
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.26 E-value=2.6 Score=28.84 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 23 DRQVEKAYKIVEKMRDEDIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
.++.+++..+++.|.-..+. |...++. ...+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555432111 1112222 22334555555555555555544
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.16 E-value=6.3 Score=33.02 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=85.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
|.....+++..++...++.-+..+-.+|..-| -+-..|..++.+|... ..++-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444555555555555555555556666543 3555566666666665 445566666666665442 3333333333
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLP------NTQSCMFLVKLCKRQEKVEIALQLWNDMVEK-GFGSYILVSDVLFDLLC 196 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 196 (272)
-|-+ .+.+++...|.+....= .| -...|.-+.... ..+.+....+...+... |...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 56666666666554321 11 112333333211 23555555555555433 33334445555556677
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 048616 197 DMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~ 215 (272)
...++.+|.+++..+.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 7777777777777776653
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.14 E-value=0.66 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 190 VLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
.+...+.+.|++++|.+.|++..+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.04 E-value=0.13 Score=35.04 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45667777888888888888887665556778888888888888778888777621 11333456667777777
Q ss_pred HHHHHHHHHHHH
Q 048616 166 VEIALQLWNDMV 177 (272)
Q Consensus 166 ~~~a~~~~~~~~ 177 (272)
++++..++..+.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777666543
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.91 E-value=2.3 Score=31.18 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--CYPDAAAYNAAIRN 89 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (272)
|.+..+..+.+.+..++++....+-.+.++. +..+-..+++.++-.|+|++|..-++-.-+.. ..+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888888888888777766433 66667778888888888888877766655432 23344566665554
No 303
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.85 E-value=4.2 Score=31.09 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH---
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK--- 161 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 161 (272)
.=|.+++..++|.+++...-+--+.--+........-|-.|.+.+++..+.++-..-.+.--.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34677788888888777665544331112233445555667788888777777766544322223334666655554
Q ss_pred --hcCcHHHHHHHH
Q 048616 162 --RQEKVEIALQLW 173 (272)
Q Consensus 162 --~~~~~~~a~~~~ 173 (272)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 467888887776
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.75 E-value=2.2 Score=26.99 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048616 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLF 192 (272)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (272)
..+-+..+...++.|+..+..+.+++|.+.+++..|.++++-++..- .+....|..++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 44445555556667777777777777777777777777777666441 22222555544
No 305
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=8.7 Score=33.70 Aligned_cols=226 Identities=14% Similarity=0.015 Sum_probs=122.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS----PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG----------- 75 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------- 75 (272)
.+|..+..-.-..|+++-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-++...-
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~ 587 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRN 587 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666788888888887543222111 122234556666777888887777776665431
Q ss_pred CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHHc-CCCCCHHhHHHHHHHHhhcCChhh----------H
Q 048616 76 CYPDAAAYNAAIR--------NYCIAKRLRDASGLM--DEMVEK-GLSPNATTYNLFFRVFYWSNDLRS----------S 134 (272)
Q Consensus 76 ~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~----------a 134 (272)
.+.....|.-+++ .+.+.++..++...| +..... -+.+-..........+.+.....- -
T Consensus 588 ~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 1111122222222 011122222222211 110000 001111112223334444333111 1
Q ss_pred HHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 135 WNLYCRMMG-TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+++.+.+.. .|.....-+.+--+.-+...|+-.+|.++-.+.+ .||...|-.=+.+++..+++++-+++-+...
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 222222211 2223333455556666778888888888776653 6788888888899999999998777665542
Q ss_pred cCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 214 KGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
++.-|.-+..+|.+.|+.++|..++.+.
T Consensus 743 -----sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 743 -----SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred -----CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 2466777889999999999999888774
No 306
>PRK11906 transcriptional regulator; Provisional
Probab=91.67 E-value=6.7 Score=32.38 Aligned_cols=80 Identities=6% Similarity=-0.035 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
.+|.++-++..+.+ +-|......+..+....++++.|...|++....+ +....+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555544 3355555555555555566666666666666553 222233333344445566666666666665
Q ss_pred HH
Q 048616 212 IE 213 (272)
Q Consensus 212 ~~ 213 (272)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 44
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.64 E-value=3.9 Score=29.61 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCcH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT---GCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
..+.|+ +.|.+.|-++...+.--++..-. .+..|.-..+.+++..++.+..+. +-.+|...+..|+..+-+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345555 77899998888776554555444 445555578899999999887543 3478899999999999999999
Q ss_pred HHHH
Q 048616 167 EIAL 170 (272)
Q Consensus 167 ~~a~ 170 (272)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.47 E-value=7.6 Score=32.57 Aligned_cols=179 Identities=8% Similarity=0.098 Sum_probs=124.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
|-...-+++..+.++.++.-+..+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44566778889999999999999999998865 3677889999999988 678888999999987542 3444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----CCHHhHHHHHHHHhhcCChhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHh
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLS-----PNATTYNLFFRVFYWSNDLRSSWNLYCRMMG-TGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 162 (272)
-| ..++.+.+...|..+...=++ .-...|..+...- ..+.+..+.+...+.. .|..--...+.-+-.-|..
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44 448889999999888765221 0122455444321 4566777777777644 3434445566667788889
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048616 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLL 195 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (272)
..++.+|++++..+.+++ ..|...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 999999999999888775 44444444444433
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.22 E-value=0.89 Score=21.46 Aligned_cols=25 Identities=0% Similarity=-0.169 Sum_probs=15.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 226 IKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+..++.+.|+.++|.+.|+++.+.-
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4555556666666666666666544
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.00 E-value=4.9 Score=29.59 Aligned_cols=186 Identities=12% Similarity=-0.004 Sum_probs=105.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048616 20 YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (272)
|-..|-+.-|.-=|.+.....+. -+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-|.. .-.|++..|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhh
Confidence 44456666666666666654322 4567888888888999999999999999887544343444444433 345888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHH-HHHHhCCCCCCHhhHHHHH-HHHHhcCcHHHHHHHHHHHH
Q 048616 100 SGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLY-CRMMGTGCLPNTQSCMFLV-KLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 177 (272)
.+=|.+.-+.... |+. -..-+..--+.-++.+|..-+ ++.... |..-|...| ..|...=..+ .+++.+.
T Consensus 153 q~d~~~fYQ~D~~-DPf-R~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPN-DPF-RSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCC-ChH-HHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHH
Confidence 8877776665332 221 111222223344566665443 333322 333333222 2222111111 2222222
Q ss_pred HcCC------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 178 EKGF------GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 178 ~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
...- ..-..||--+.+.+...|+.++|..+|+-.+..++
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2110 11135777788899999999999999998876643
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.95 E-value=6.9 Score=32.51 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=77.9
Q ss_pred hcCChhhHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 127 WSNDLRSSWN-LYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 127 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
..|+.-.|-+ ++..+....-.|+... .....+...|+++.+.+.+....+. +.....+...+++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455544433 3333443322344333 3334556789999998888776544 3444566778888888999999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 206 KSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
..-..|....+. +..............|-++++.-.|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999888876554 44444444445566778888888888887544
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.78 E-value=3.9 Score=32.30 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
.|.+.|.+++|++.|..-.... +-+.+++..-..+|.+...+..|+.=-......+ ......|+.-..+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 3455566666666665544331 1255555555555655555555544433333222 1222233333333333444444
Q ss_pred HHHHHHHHHH
Q 048616 204 AEKSFLEMIE 213 (272)
Q Consensus 204 a~~~~~~~~~ 213 (272)
|.+=++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 4444444443
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.74 E-value=7.2 Score=31.05 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 183 SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP---SQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
....+|..+...+.+.|+++.|...+..+...+..+ +......-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777777888888888888888776643221 222233345566666777777777777665
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.49 E-value=5.6 Score=29.33 Aligned_cols=183 Identities=9% Similarity=-0.006 Sum_probs=98.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPD-AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWN 136 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (272)
.|-+.-|.-=|.+.... .|+ +.+||-+.--+...|+++.|.+.|+...+..+.-+-...|-= -++.--|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHH
Confidence 34444444444444443 344 668888888888999999999999999887544232222222 23445678888877
Q ss_pred HHHHHHhCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHH-HHHcCCCccHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 137 LYCRMMGTGC-LPNTQSCMFLVKLCKRQEKVEIALQLWND-MVEKGFGSYILVSD-VLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
-+...-+.+. .|-...|..+.. ..-++.+|..-+.+ ..+. +..-|. .++..|...=..+.+.+-...-..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7666644431 222333333332 33456666544433 3222 222332 233333333222222222211111
Q ss_pred cCC---CCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 214 KGH---KPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 214 ~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+- ..=..||--+...+...|+.++|..+|+-....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 100 0123577778888999999999999888776544
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.45 E-value=15 Score=34.20 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh--HHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 192 FDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS--FRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
+.+|...|+|.+|+.+..++.. .-+... -..|..-+...+++-+|.++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4555666666666666555521 112222 1346777777777777777776653
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.17 E-value=0.71 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
..++.+.|++++|.+.|+++++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33444445555555555555443
No 317
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=15 Score=33.31 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHH--
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDI---SPDVISYTSIIGGLGLVGQP--DKARDVLKEMKEYGCYPDAAAYN-- 84 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 84 (272)
-|..|+..|...|+.++|+++|.+.....- .--...+..++.-..+.+.. +-..++-+...+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467788888888888888888888766310 00111223333333333332 22222222222211000000000
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 85 ----------AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 85 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
..+-.|......+-+..+++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345556666677777777655444456666666665544
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.56 E-value=3.6 Score=25.78 Aligned_cols=59 Identities=12% Similarity=0.260 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048616 133 SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLF 192 (272)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (272)
++.+-++.+...+..|+..+..+.+++|-+.+++..|.++++-++..- ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 444555555566667777777777777777777777777777665331 11333454444
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.42 E-value=0.71 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLM 103 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~ 103 (272)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444444
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.38 E-value=1.5 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666554
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=14 Score=31.73 Aligned_cols=151 Identities=15% Similarity=0.044 Sum_probs=97.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048616 21 CKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (272)
.-.|+++.|..++..+. ....+.+...+.+.|-.++|+++ .+|+..- .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 34677777777654443 22345566667777777776654 2332221 23345668888888
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 101 GLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7766543 566788888888899999988888876543 4456666777777776666666666665
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+.| .-.-++...|+++++.+++.+-
T Consensus 723 -~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 -KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 333 2334566788888888877654
No 322
>PHA02875 ankyrin repeat protein; Provisional
Probab=88.62 E-value=8.9 Score=31.51 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC
Q 048616 20 YCKDRQVEKAYKIVEKMRDEDISPDVIS--YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA--AYNAAIRNYCIAKR 95 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 95 (272)
.++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556665544443 3454443321 222344444556554 333344445444322 11123444555666
Q ss_pred HHHHHHHH
Q 048616 96 LRDASGLM 103 (272)
Q Consensus 96 ~~~a~~~~ 103 (272)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544444
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.36 E-value=1.7 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=8.5
Q ss_pred HHHHhcCcHHHHHHHHHHHH
Q 048616 158 KLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~ 177 (272)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.22 E-value=1.6 Score=22.88 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=7.6
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 048616 54 GLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~ 72 (272)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333444444444444333
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.99 E-value=1.9 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555554443
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=13 Score=31.85 Aligned_cols=133 Identities=14% Similarity=-0.022 Sum_probs=93.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..-+.+...+-+.|-.++|+++- +|.. .-.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 35566777777777777776542 3332 12344557789999988776653 567799999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
.+.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. .+. ...+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHH
Confidence 999999999999977654 45566677778887777777666666663 232 233556789999998
Q ss_pred HHHHHH
Q 048616 171 QLWNDM 176 (272)
Q Consensus 171 ~~~~~~ 176 (272)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 887653
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.93 E-value=6.7 Score=26.82 Aligned_cols=117 Identities=10% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CC
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVI--SYTSIIGGLGLVGQPDKARDVLKEMKEYG-----CY 77 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 77 (272)
.+.++..+|...+... ...|.+.+..++.. ..+.++.-....+++...+.+++.+.... -.
T Consensus 9 ~~~~nL~~w~~fi~~~------------~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~ 76 (145)
T PF13762_consen 9 NVLANLEVWKTFINSH------------LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGW 76 (145)
T ss_pred chhhhHHHHHHHHHHH------------HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhh
Confidence 4456666776666543 33444444444442 35666776677777877777777764221 13
Q ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhh
Q 048616 78 PDAAAYNAAIRNYCIAKR-LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS 133 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (272)
.+...|..++.+..+... ---+..+|.-+.+.+.+++..-|..++.++.+....+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 466788888888866555 44566778888877788888888889888777644333
No 328
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.73 E-value=17 Score=31.11 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=117.9
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
++..+|+.-+..-.+.|+++.+.-+|++.... ...=...|-..+.-....|+.+-|..++....+--++..+.+.-.-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 46678999999999999999999999887642 11123456666666666799888888887777654333322222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhhcCChhhHH---HHHHHHHhCCCCCCHhhHHHHHH-----
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNAT-TYNLFFRVFYWSNDLRSSW---NLYCRMMGTGCLPNTQSCMFLVK----- 158 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~----- 158 (272)
...-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. +++...... .-+..+...+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 22344689999999999998763 4432 2223344556677777776 333333222 112222222221
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
.+.-.++.+.|..++.++.+.- +++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 2234578899999999988764 777788888888776665
No 329
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=87.67 E-value=7 Score=26.82 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=32.7
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 32 IVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
+.+.+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|-..-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555554443 34455555555555666666666666655555444444444444443
No 330
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.38 E-value=6.5 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048616 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLF 192 (272)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (272)
..+-+..+...++.|+.......+++|-+.+++..|.++|+-++.. ..+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3444555566677788888888888888888888888888776654 233333444443
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.91 E-value=12 Score=28.65 Aligned_cols=203 Identities=9% Similarity=0.077 Sum_probs=115.6
Q ss_pred CCCCCcCHHhHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcCChhHHHHHHHHHHHc---C
Q 048616 3 EMGVKPDIVSYNCLIDVY-CKDRQVEKAYKIVEKMRDEDISPDVI---SYTSIIGGLGLVGQPDKARDVLKEMKEY---G 75 (272)
Q Consensus 3 ~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 75 (272)
+.|-+||+..=|..-+.- .+...+++|+.-|.+..+.......+ ....++....+.+++++....+.++... .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 456778887766544432 23457899999999887743222333 3456788899999999999999888521 1
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----
Q 048616 76 C--YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVE----K-GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT---- 144 (272)
Q Consensus 76 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 144 (272)
+ .-+....|+++.--....+.+...+.++.-.+ . +-..--.|-..|-..|...+++.+..++++++..+
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 12445667777665555555555555443322 1 00001112345666777777777777777776442
Q ss_pred -CC------CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCCccHHHHHHHHHHH-----HhcCCHHHHHH
Q 048616 145 -GC------LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK-GFGSYILVSDVLFDLL-----CDMGKLVEAEK 206 (272)
Q Consensus 145 -~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~ 206 (272)
|- ..-..+|..=|..|..+.+-.....++++.... ..-|.+.... +|+-| .+.|++++|..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 10 011245666666676666666666666654422 2234433322 23322 34566666543
No 332
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.88 E-value=3.3 Score=22.12 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=19.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 048616 196 CDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIK 227 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 227 (272)
.+.|-++++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 45566666666666666666666555555443
No 333
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.81 E-value=4.1 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
++...++++.++.. ..|-.---.+|.++.+.|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 22222223466677777777777777766643
No 334
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=86.73 E-value=8 Score=26.53 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
...+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555554433 23455555555555666666666666555555555444555554444
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.14 E-value=11 Score=27.48 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=43.0
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048616 126 YWSNDLRSSWNLYCRMMGTGCLPNT-----QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK 200 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (272)
..+|++++|.+-|...... +++.. ..|..-..++.+.+.++.|+.--....+.+. .+......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 4455555555555555443 11111 1233333444556666666655555555442 122222233345666666
Q ss_pred HHHHHHHHHHHHHc
Q 048616 201 LVEAEKSFLEMIEK 214 (272)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (272)
+++|++=|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
No 336
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.01 E-value=21 Score=30.54 Aligned_cols=185 Identities=10% Similarity=0.000 Sum_probs=117.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
+..+|..-+.--.+.|+.+.+.-+|++..-- +..-...|-..+.-....|+.+.|..++....+-.++-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888889999999999999988642 222344555555555556999999988877766544433333222222
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHHHH---HHHHHHHHcCCCccHHHHHHHHHH-----
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEIAL---QLWNDMVEKGFGSYILVSDVLFDL----- 194 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~----- 194 (272)
..-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+. +++....... .+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHH
Confidence 3445789999999999997763 443 23333444556788888887 4444333221 122222222211
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh
Q 048616 195 LCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234 (272)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (272)
+.-.++.+.|..++.++.+. .+++...|..++.......
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33468889999999999876 4556666766766665544
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.93 E-value=6.8 Score=24.83 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=23.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
..+...|++++|..+.+.. ..||...|-++-. .+.|.-+++..-+.+|..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444555555555554433 2445444443332 2445555555545454444
No 338
>PRK09687 putative lyase; Provisional
Probab=85.60 E-value=15 Score=28.49 Aligned_cols=236 Identities=9% Similarity=-0.014 Sum_probs=148.7
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP----DKARDVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 82 (272)
.+|..+....+.++...|.. .+...+..+... ++...-...+.++++.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 35667777788888888764 444445555543 3566666677788888864 4677778777443 367777
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 048616 83 YNAAIRNYCIAKRL-----RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157 (272)
Q Consensus 83 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (272)
-...+.++...+.. ..+...+...... ++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 76677776655421 2334444333332 466666777888888877 4566666666553 3445555566
Q ss_pred HHHHhcC-cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhH
Q 048616 158 KLCKRQE-KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQ 236 (272)
Q Consensus 158 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (272)
.++.+.+ +-+.+...+..+.. .++..+-...+.++.+.|+. .|...+....+.+ + .....+.++..-|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666543 23456666666553 34556667788888898884 5666666666542 2 233477788888885
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHhhccccc
Q 048616 237 EALQNLSNKMALFGPSMIPKREEYLAEMSASDS 269 (272)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~ 269 (272)
++...+..+.... ||...-...+.+|..
T Consensus 252 -~a~p~L~~l~~~~----~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYKF----DDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhhC----CChhHHHHHHHHHhc
Confidence 5777788877644 777777777777653
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.40 E-value=17 Score=28.88 Aligned_cols=76 Identities=3% Similarity=-0.077 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCcHHHHHHHHHH
Q 048616 99 ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR---QEKVEIALQLWND 175 (272)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~ 175 (272)
-+.++++.++.+. .+......++..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|.+
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445555555433 244445555555555555555555555555442 2234444444443322 2234445444444
Q ss_pred H
Q 048616 176 M 176 (272)
Q Consensus 176 ~ 176 (272)
.
T Consensus 128 ~ 128 (321)
T PF08424_consen 128 C 128 (321)
T ss_pred H
Confidence 3
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.39 E-value=15 Score=28.45 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=22.4
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
..|..+|.+.+|.++.++....+ +.+...+-.++..+...|+--.+..-+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 34444445555554444444432 334444444444444444433333333
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.28 E-value=33 Score=32.18 Aligned_cols=78 Identities=21% Similarity=0.122 Sum_probs=37.3
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 204 (272)
+.+...+++|.-.|+..-+ ..-.+.+|...|+|.+|..+..++.... .--..+-..|+.-+...++.-+|
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhH
Confidence 3345555555555544311 1223455556666666666665543211 00011113455555666666666
Q ss_pred HHHHHHHH
Q 048616 205 EKSFLEMI 212 (272)
Q Consensus 205 ~~~~~~~~ 212 (272)
-++..+..
T Consensus 1019 a~il~e~~ 1026 (1265)
T KOG1920|consen 1019 AKILLEYL 1026 (1265)
T ss_pred HHHHHHHh
Confidence 66655543
No 342
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.16 E-value=4.2 Score=21.71 Aligned_cols=31 Identities=3% Similarity=0.173 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSII 52 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (272)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.02 E-value=7.6 Score=24.62 Aligned_cols=88 Identities=17% Similarity=0.067 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSN 244 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (272)
..++|..+-+.+...+-. ....--+=+..+.+.|++++|..+.+.+ ..||...|-++. -.+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 456777777777655422 2222233445678999999999988776 589998887764 345677777777777
Q ss_pred HHHhcCCCCCCCHHHHHH
Q 048616 245 KMALFGPSMIPKREEYLA 262 (272)
Q Consensus 245 ~~~~~~~~~~p~~~~~~~ 262 (272)
+|...| .|....|..
T Consensus 93 rla~sg---~p~lq~Faa 107 (115)
T TIGR02508 93 RLAASG---DPRLQTFVA 107 (115)
T ss_pred HHHhCC---CHHHHHHHH
Confidence 776665 466666554
No 344
>PRK09687 putative lyase; Provisional
Probab=84.36 E-value=17 Score=28.16 Aligned_cols=186 Identities=10% Similarity=-0.020 Sum_probs=94.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHhHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL----RDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
+.......+.++...|. +.+...+..+... +|...-...+.++...|+. +++...+..+... .|+...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 55566666666666664 3444444445432 4556666666667776653 4566666666433 24555555
Q ss_pred HHHHHHhhcCCh-----hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048616 120 LFFRVFYWSNDL-----RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDL 194 (272)
Q Consensus 120 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (272)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 555555554321 223333333322 2355555566667766666 3455555555442 222333444555
Q ss_pred HHhcC-CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 195 LCDMG-KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 195 ~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
+.+.+ ..+.+...+..+.. .++...-...+.++.+.++......+.+.
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~ 231 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKE 231 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHH
Confidence 55542 23455555555553 33444444456666666664433333333
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.17 E-value=18 Score=28.14 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcC-----CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChh
Q 048616 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYC------IAK-----RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR 132 (272)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (272)
-.+...+..+.-.+....++...++++. ++| ...+|+++|.-+.+..- .+.+-..++..+-...+..
T Consensus 106 LnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~k 183 (361)
T COG3947 106 LNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEK 183 (361)
T ss_pred HHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchh
Confidence 3333444443333334556666666665 122 24689999999887632 2344456777777777777
Q ss_pred hHHHHHHHH-------Hh-------------------CCCCCCHhhHHHHHHHHHh-cCcHHHHHHHHHHHHHcCCCc--
Q 048616 133 SSWNLYCRM-------MG-------------------TGCLPNTQSCMFLVKLCKR-QEKVEIALQLWNDMVEKGFGS-- 183 (272)
Q Consensus 133 ~a~~~~~~~-------~~-------------------~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-- 183 (272)
+|...+... .. .++.-|..-|...++.... ...++++.++.......-++-
T Consensus 184 ka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~ 263 (361)
T COG3947 184 KASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEAD 263 (361)
T ss_pred hHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccc
Confidence 777665432 11 1234555666666665532 346677777776653221111
Q ss_pred --------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 184 --------------YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 184 --------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
...+++.....|..+|.+.+|.++.+..+.. .| +...+-.+++.+...|+.-.+..-++++.
T Consensus 264 y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 264 YPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 1224455667888999999999999998775 44 44444458899999998666666666553
No 346
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=83.93 E-value=13 Score=32.49 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCcHHH------HHHHHHHHHHcCCCccHHHHHHH
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGT--GCLPNTQSCMFLVKLCKRQEKVEI------ALQLWNDMVEKGFGSYILVSDVL 191 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 191 (272)
.|+.+|..+|++..+.++++.+... |-+.-...++..++...+.|.++- +.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 6788888888888888888887543 333445567777788888776543 23333332 245566677666
Q ss_pred HHHHHh
Q 048616 192 FDLLCD 197 (272)
Q Consensus 192 i~~~~~ 197 (272)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 347
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=83.87 E-value=12 Score=26.77 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=23.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSND 130 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (272)
+-.|.+.|.+++|.+++++.... |+......-+....+.++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 34567777777777777777653 344444444444444433
No 348
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.77 E-value=24 Score=29.32 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHcCCCccH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYI----LVSDVLFDL--LCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
.+..-..+-+-+.+.|++|-. ..-|.+.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-......++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 344444444444455544432 222333322 3345666655543333322 35566666655555555556666
Q ss_pred HHHHHHHH
Q 048616 239 LQNLSNKM 246 (272)
Q Consensus 239 a~~~~~~~ 246 (272)
|..++..+
T Consensus 514 A~~~l~~L 521 (549)
T PF07079_consen 514 AWEYLQKL 521 (549)
T ss_pred HHHHHHhC
Confidence 66666654
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.69 E-value=10 Score=25.16 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 63 KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+..+-++.+....+.|++.....-+.++-+.+|+..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666667777777777777777777777777777766644
No 350
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.64 E-value=20 Score=28.48 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 148 PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS---YILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
....++..+.+.+.+.|.++.|...+..+...+... .+...-.-.+.+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777888888888888888888877643111 223334455666777888888888877766
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.47 E-value=33 Score=30.07 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=106.0
Q ss_pred HHHHHHHHh-hCCCCCC--HhhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCCHHHH
Q 048616 29 AYKIVEKMR-DEDISPD--VISYTSIIGGLG-LVGQPDKARDVLKEMKEYGCYPDAA-----AYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 29 a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 99 (272)
|+..++-+. +..++|. ..++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 444555555 3333332 334555555555 5688999999999876443222221 2335566677766666 9
Q ss_pred HHHHHHHHHcC----CCCCHHhHHHH-HHHHhhcCChhhHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCcHHHH
Q 048616 100 SGLMDEMVEKG----LSPNATTYNLF-FRVFYWSNDLRSSWNLYCRMMGTG---CLPNTQSCMFLVKLCK--RQEKVEIA 169 (272)
Q Consensus 100 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a 169 (272)
...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 98888877541 11122223333 222333479999999998875431 2444555555665553 45666777
Q ss_pred HHHHHHHHHcC---------CCccHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 048616 170 LQLWNDMVEKG---------FGSYILVSDVLFDLLC--DMGKLVEAEKSFLEMI 212 (272)
Q Consensus 170 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 212 (272)
.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777663321 2345667777776544 6778777777766554
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.38 E-value=16 Score=26.43 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=24.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 192 FDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+.....|.+++|+..++...+.+.. ......-..++...|+.++|..-|++..+..
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33444455555555555444332111 1111122344555555555555555554443
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.35 E-value=21 Score=30.67 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=47.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHH
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWN 136 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (272)
-.|+...|...+.........-.......|.+...+.|-...|..++.+..... ...+-++..+..++....+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666555432211122233344455555556666666666555543 2344555666666666677777777
Q ss_pred HHHHHHhC
Q 048616 137 LYCRMMGT 144 (272)
Q Consensus 137 ~~~~~~~~ 144 (272)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 77666554
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.32 E-value=26 Score=28.77 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=91.9
Q ss_pred CCCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 048616 3 EMGVKPDIVS--YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVI--SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP 78 (272)
Q Consensus 3 ~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (272)
+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~ 94 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFA 94 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcc
Confidence 3566665532 33445556677887544 4444555544422 11234555667788776655554 33211
Q ss_pred CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC---H
Q 048616 79 DAA---AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT--YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN---T 150 (272)
Q Consensus 79 ~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 150 (272)
+.. .-...+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++ .
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~ 166 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDC 166 (413)
T ss_pred cccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCC
Confidence 110 011233444555665 45555566665554321 123444555677765544444 3333322 2
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV---SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.-.+.+ ...+..|+.+-+ +.+.+.|..++... ....+...+..|+.+- .+.+.+.|..|+.
T Consensus 167 ~g~TpL-~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 167 CGCTPL-IIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred CCCCHH-HHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 222333 334456765544 44445555444321 1234444456676653 3444556666654
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.27 E-value=29 Score=29.15 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
....|+++.+.+.+...... +-....+...++......|++++|..+-.-|....+. +...........-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34556777776666655432 2334455666666666677777777776666655443 333333333333445556666
Q ss_pred HHHHHHHHhC
Q 048616 135 WNLYCRMMGT 144 (272)
Q Consensus 135 ~~~~~~~~~~ 144 (272)
...|+++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 6666666443
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.11 E-value=11 Score=27.31 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKE-YGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+...+......++.+......+...+ ....|++.+|..++..+...|+.++|.++..++...
T Consensus 111 ~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 111 YAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33334433455555444443333332 124689999999999999999999999999998876
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.82 E-value=13 Score=26.83 Aligned_cols=33 Identities=15% Similarity=-0.087 Sum_probs=22.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 182 GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 182 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.|+..+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666677777777777777666666553
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.63 E-value=6.5 Score=23.61 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=20.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPD--AAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
...+-++|+..|+...+.-..+. -.++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544322211 12344445555555555554443
No 359
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=81.12 E-value=5.6 Score=22.91 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=27.6
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL 57 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (272)
.|+...++.++..+++..-.+.++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666553 244455444444443
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.00 E-value=19 Score=26.32 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=67.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
+-+...|++++|..-|.+.++.-+.... ..|..-..++.+.+.++.|+.--...++.+ +........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 4577889999999999999987332222 234444567888889999988887777764 22334444556678889
Q ss_pred CcHHHHHHHHHHHHHcC
Q 048616 164 EKVEIALQLWNDMVEKG 180 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~ 180 (272)
..+++|+.=|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999988774
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=24 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCcHHhHH
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEM----IEKGHKPSQVSFR 224 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~ 224 (272)
.-++..+.+.|++.+|..+...+ .+.+-+|+..+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 44677788888888888765543 3334455544443
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.66 E-value=1.9 Score=28.76 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=11.0
Q ss_pred CChhHHHHHHHHHHHcCCCCC
Q 048616 59 GQPDKARDVLKEMKEYGCYPD 79 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~ 79 (272)
|.-..|..+|++|.++|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344445555555555555544
No 363
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.43 E-value=40 Score=29.65 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=91.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---c
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG-CYPDAAAYNAAIRNYCI---A 93 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 93 (272)
..+.-.|+++.|++.+-+ ..+...+...+...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888766 2233445555555555443322222211 2222111 01122456778888876 4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHH-HHHhhcCChhhHH-----------HHHHH---HHhCCCCCCHh---hHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFF-RVFYWSNDLRSSW-----------NLYCR---MMGTGCLPNTQ---SCMF 155 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-----------~~~~~---~~~~~~~~~~~---~~~~ 155 (272)
.+..+|.++|--+....-+.....+...+ ......++++..+ .++++ +.... .++.. +...
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~-~~~~~~~~i~~~ 419 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFD-DDEDFLREIIEQ 419 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-S-SSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCC-CcHHHHHHHHHH
Confidence 56778888776665432211122222222 2222233222111 11221 11111 11222 2333
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHHHHcC-----C-C
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFD-LLCDMGK-----------LVEAEKSFLEMIEKG-----H-K 217 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~-----------~~~a~~~~~~~~~~~-----~-~ 217 (272)
...-+...|++++|..+|.-..+.+ .-..+.|..+. +...... ...|..+.+.....+ + .
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3445667888999988887655331 11223333333 2222222 334555554443221 1 1
Q ss_pred CcHHhHHHHHHH-----HHHhhhHHHHHHHHHHH
Q 048616 218 PSQVSFRRIKAL-----MELANKQEALQNLSNKM 246 (272)
Q Consensus 218 p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~ 246 (272)
.+..|+..|+.. ....|+++.|.+.++++
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 223455544332 35678888888777765
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=23 Score=26.60 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 048616 54 GLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~ 72 (272)
.+.-.+++++|.++|.+.-
T Consensus 23 lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 4445567888888877654
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.82 E-value=17 Score=24.94 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHhhcCC-hhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGL-----SPNATTYNLFFRVFYWSND-LRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
.+.++.-....+++....++++.+.-... ..+...|.+++.+..+..- .--+..+|..+++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666666667776666666632100 1234455566655544433 23345555555555555566666666
Q ss_pred HHHHHh
Q 048616 157 VKLCKR 162 (272)
Q Consensus 157 ~~~~~~ 162 (272)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655543
No 366
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.55 E-value=18 Score=28.79 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=59.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHH
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQE 237 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (272)
.-|.++|.+++|+..|..-.... +.+.+++..-..+|.+..++..|..=....+..+- .-...|..-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 34678999999999998766553 33777777777889998888877766655543210 01122333333333345555
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHH
Q 048616 238 ALQNLSNKMALFGPSMIPKREEYLA 262 (272)
Q Consensus 238 ~a~~~~~~~~~~~~~~~p~~~~~~~ 262 (272)
+|.+-++..++ +.|+...+..
T Consensus 183 EAKkD~E~vL~----LEP~~~ELkK 203 (536)
T KOG4648|consen 183 EAKKDCETVLA----LEPKNIELKK 203 (536)
T ss_pred HHHHhHHHHHh----hCcccHHHHH
Confidence 56555555554 3366544433
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.51 E-value=11 Score=22.66 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=6.6
Q ss_pred HHHHHHHhcCCHHHHH
Q 048616 190 VLFDLLCDMGKLVEAE 205 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~ 205 (272)
.++.+++.-|++.+++
T Consensus 48 ~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 48 YLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 368
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.47 E-value=20 Score=25.67 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhC
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.+..|.+.|.+++|.+++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC
Confidence 456799999999999999998764
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.40 E-value=4.4 Score=18.02 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRD 38 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~ 38 (272)
|..+...+...|+++.|...|+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44445555555555555555555443
No 370
>PRK09462 fur ferric uptake regulator; Provisional
Probab=78.84 E-value=6.2 Score=27.14 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=40.6
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 35 KMRDEDISPDVISYTSIIGGLGLV-GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
.+.+.|++++.. -..++..+... ++.-.|.++++++.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345567775554 34455555543 456788888888888776667777666777777777643
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.20 E-value=13 Score=22.82 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=16.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChh
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR 132 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (272)
..|+.+.|.+++..+. .| +..|..++.++-..|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3355555555555555 32 223445555555544433
No 372
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=78.07 E-value=26 Score=30.70 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPD------KARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+|+.+|..+|++.++.++++.+... |-+.-...+|..|+...+.|.++ .|.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999988764 22223456777888888888764 3444444443 34467777777
Q ss_pred HHHHHh
Q 048616 87 IRNYCI 92 (272)
Q Consensus 87 ~~~~~~ 92 (272)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.20 E-value=25 Score=25.52 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHhhcCChhhHHHHHHHHHhCCCCCCH----hhHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN--LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT----QSCM 154 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 154 (272)
..|..++.... .+.. +.....+.+...+......++. .+...++..+++++|...++..... +-|. .+--
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~l 130 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHH
Confidence 34444454443 2333 4555556666552221111222 2346678889999999988877643 1121 2233
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
.+.+.....|.+++|..+++.....+..+ .....-.+.+...|+-++|..-|...++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44556678899999999998877664332 223445677889999999999999988875
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.65 E-value=52 Score=28.90 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=112.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH---
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMK-EYGCYPDA--AAYNAAIRNYC-IAKRLRDASGLMDEMVEKGLSPNAT--- 116 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 116 (272)
+...|..+|.. |++.++-+. +..++|.. .++-.+...+. ...+++.|+..+.+.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 55667766664 455555555 33344432 34555666665 6889999999999876543222222
Q ss_pred --hHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCCCHhhHHHH-HHHHHhcCcHHHHHHHHHHHHHcC---CCccHH
Q 048616 117 --TYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLPNTQSCMFL-VKLCKRQEKVEIALQLWNDMVEKG---FGSYIL 186 (272)
Q Consensus 117 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 186 (272)
.-..++..+.+.+... |...+++..+. +..+-...+..+ +..+...++...|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234556666666655 88888876543 223334444444 333334479999999998876542 244455
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC---------CCcHHhHHHHHHHH--HHhhhHHHHHHHHHHH
Q 048616 187 VSDVLFDLLC--DMGKLVEAEKSFLEMIEKGH---------KPSQVSFRRIKALM--ELANKQEALQNLSNKM 246 (272)
Q Consensus 187 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 246 (272)
++-.++.+.. +.+..+++.+.++++..... .|...+|..+++.+ ...|++..+...++++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544 45667778888877743221 23455666655543 4556655555555444
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.59 E-value=25 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 048616 201 LVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230 (272)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (272)
+++|.+.|+...+. .|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555543 66767776655444
No 376
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=75.56 E-value=46 Score=27.76 Aligned_cols=193 Identities=10% Similarity=0.033 Sum_probs=90.9
Q ss_pred HhcCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHh
Q 048616 56 GLVGQPDKARDVLKEMKEY--GCYP------------DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGL----SPNATT 117 (272)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 117 (272)
.+.+++.+|.+.+..-.++ +-+| |-..=+..++++...|++.++..+++++...=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3556666666666555433 2111 111124455666677777777777766654422 245666
Q ss_pred HHHHHHHHhhc--------CCh-------hhHHHHHHHHHhC------CCCCCHhhHHHHHHHHHhc--CcHHHHHHHHH
Q 048616 118 YNLFFRVFYWS--------NDL-------RSSWNLYCRMMGT------GCLPNTQSCMFLVKLCKRQ--EKVEIALQLWN 174 (272)
Q Consensus 118 ~~~l~~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~ 174 (272)
|+.++-.+.+. ... +-+.-..+++... .+.|....+..++....-. .+..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 66544333321 111 1111111222111 2233333444444433221 12222233333
Q ss_pred HHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 175 DMVEKGFGSYIL-VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK----PSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 175 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.-...-+.|+-. ....++..+.+ +.+++..+.+.+....+. -=..+|..++....+.++...|.+.+.-++..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333444422 22333444433 555555555554433211 12346677788888888888898888877654
Q ss_pred C
Q 048616 250 G 250 (272)
Q Consensus 250 ~ 250 (272)
.
T Consensus 328 d 328 (549)
T PF07079_consen 328 D 328 (549)
T ss_pred C
Confidence 4
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.14 E-value=70 Score=32.73 Aligned_cols=150 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 50 SIIGGLGLVGQPDKARDVLKE----MKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.+..+-.+.+.+.+|...+++ ..+. ......+..+...|...+++|...-+....... |+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---PS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---cc---HHHHHHHH
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
...|++..|...|+.+.+.+ ++...+++-++..-...|.++......+......-.-....++.=+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Q ss_pred HHH
Q 048616 206 KSF 208 (272)
Q Consensus 206 ~~~ 208 (272)
...
T Consensus 1539 ~~l 1541 (2382)
T KOG0890|consen 1539 SYL 1541 (2382)
T ss_pred hhh
No 378
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.08 E-value=3.8 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 048616 198 MGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228 (272)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (272)
.|.-.+|..+|..|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34445566777777777766654 455444
No 379
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.89 E-value=20 Score=23.14 Aligned_cols=78 Identities=6% Similarity=-0.107 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 130 DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFL 209 (272)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (272)
..++|..+.+.+...+. -...+-.+-+..+.+.|++++| +..-. ....||...|-+|- -.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 44666666666655542 2233333344455566666666 11111 12245555444333 236666666666666
Q ss_pred HHHHc
Q 048616 210 EMIEK 214 (272)
Q Consensus 210 ~~~~~ 214 (272)
++..+
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.39 E-value=31 Score=29.78 Aligned_cols=100 Identities=6% Similarity=-0.060 Sum_probs=58.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQ 171 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (272)
..|+...|.+.+.......+.-..+..-.|.....+.+....|..++.+..... .....++..+-+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777777776665543222223334445555666666677777776655443 2334456666677777777888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHH
Q 048616 172 LWNDMVEKGFGSYILVSDVLFD 193 (272)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~ 193 (272)
.|++..+.. +.+..+-+.|..
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHH
Confidence 877776654 333344444443
No 381
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=73.70 E-value=29 Score=24.54 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=31.6
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 37 RDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
.+.|++++..- ..++..+...++.-.|.++++++.+.+...+..|...-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44455544432 334444444455556666666666666555555555555555555543
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.69 E-value=10 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048616 188 SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218 (272)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (272)
|+.-|+..++.|++++|+.++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3455555555555555555555555555543
No 383
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.49 E-value=9.3 Score=29.67 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGC 76 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (272)
+..|....+.||+++|+.++++.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555554443
No 384
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.74 E-value=19 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 048616 197 DMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228 (272)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (272)
+.|+..+|.+.+-.+.+.+..|...-...|..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777777777777777666666554444443
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.33 E-value=63 Score=29.67 Aligned_cols=116 Identities=8% Similarity=-0.036 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCcH--HHHHHHHHHHHHcCCCccHHHHH--
Q 048616 117 TYNLFFRVFYWSNDLRSSWNLYCRMMGTG---CLPNTQSCMFLVKLCKRQEKV--EIALQLWNDMVEKGFGSYILVSD-- 189 (272)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 189 (272)
-|..|+..|...|+.++|+++|.+..... ..--..-+..+++.+.+.+.. +-+.++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788999999999999999999886532 111112233455555554443 55555554444332111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 190 ----------VLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 190 ----------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
.-+-.|......+-+..+++.+....-.++..-.+.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223355667777888888888776656666666667666654
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.13 E-value=16 Score=20.77 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 200 KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.++...++++.+... +-|-.---.++.++...|++++|.++++++..
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566666666543 22333333589999999999999999998764
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=71.87 E-value=49 Score=26.39 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHhC---CCCCCHhhHH--HHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGT---GCLPNTQSCM--FLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
+...-+.++.++|++.++++.+. .-.|+.+.|. ...+.+...|+.+++.+++++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333444555555555554321 1123333222 222333444555555555554443
No 388
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.81 E-value=18 Score=31.38 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYILV 187 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (272)
+.+++.+|.+.+-.+.+.+..|...-
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 34677777777767766666665443
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.53 E-value=24 Score=22.73 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHH
Q 048616 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCR 140 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (272)
.++|..+.+.+...+. ....+--+-+..+.+.|++++|+ ........||...|-+| +-.+.|.-+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL----l~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL----LLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH----HHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH----HhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 4455555555554432 11112222233344555555551 11111223444444333 33445555555555555
Q ss_pred HHhCC
Q 048616 141 MMGTG 145 (272)
Q Consensus 141 ~~~~~ 145 (272)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 54443
No 390
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.31 E-value=35 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
+++|.+.|++.... .|+..+|..-+.... +|-+++.++.+++
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 34445555554443 566667766665553 3444555555543
No 391
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=71.24 E-value=43 Score=26.35 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH----------hcCcHHHH
Q 048616 100 SGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCK----------RQEKVEIA 169 (272)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 169 (272)
.++|+.+...++.|.-.++..+.-.+.+.=.+..++.+|+.+...... |..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 577888888888888888877777777777888888888888654222 555555554 35788877
Q ss_pred HHHHHH
Q 048616 170 LQLWND 175 (272)
Q Consensus 170 ~~~~~~ 175 (272)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 392
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=70.74 E-value=50 Score=26.00 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=9.2
Q ss_pred CCCHhhHHHHHHHHHhcC
Q 048616 147 LPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~ 164 (272)
+|+..+...+...+...|
T Consensus 220 Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 220 PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred CCcchhHHHHHHHHhHhh
Confidence 555555555555444443
No 393
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.60 E-value=35 Score=24.14 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=32.3
Q ss_pred HHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 107 VEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
...|++++..- ..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34455544432 34444444455556667777777666655666665555666655553
No 394
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=69.46 E-value=19 Score=20.52 Aligned_cols=16 Identities=6% Similarity=0.082 Sum_probs=7.4
Q ss_pred hcCChhhHHHHHHHHH
Q 048616 127 WSNDLRSSWNLYCRMM 142 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~ 142 (272)
..|++-+|.++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3445555555555543
No 395
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.31 E-value=56 Score=25.98 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh---cCChhhHHHHH
Q 048616 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW---SNDLRSSWNLY 138 (272)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 138 (272)
+.-+.++++..+.+ +.+......+|..+.+..+.++..+.++++...... +...|...|..... .-.++...++|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556667766653 345666667777777777777777777777776432 55566665554433 22344555554
Q ss_pred HHHHh------CCC----CCC----Hhh---HHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048616 139 CRMMG------TGC----LPN----TQS---CMFLVKLCKRQEKVEIALQLWNDMVEKGF 181 (272)
Q Consensus 139 ~~~~~------~~~----~~~----~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (272)
.+..+ .+. .+. ... +..+...+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44321 111 011 111 22222233467888888888887777654
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.01 E-value=45 Score=25.27 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHhhcCChhhHHHHHHHH
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEK----GL-SPNATTYNLFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
-.+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556677777777777777766422 21 233445556666777777777766655444
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.92 E-value=25 Score=21.84 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445667777777777777664
No 398
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=68.61 E-value=25 Score=21.61 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048616 31 KIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (272)
++|+-....|+..|...|..++....-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555544444443334444444444443
No 399
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=59 Score=25.87 Aligned_cols=136 Identities=10% Similarity=-0.014 Sum_probs=81.8
Q ss_pred CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH----cCCCcc
Q 048616 110 GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT-GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE----KGFGSY 184 (272)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 184 (272)
.++.|...++.|..+ +....++..+..+...+. |-.--...+......|++.|+.+.|.+.++...+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344566555555443 122233333334444332 2222234566677789999999999988877654 377777
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH--HHHHHHhhhHHHHHHHHHHHH
Q 048616 185 ILVSDVL-FDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI--KALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 185 ~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 247 (272)
...+..= .-.|..+.-+.+-.+..+.+.+.|...+...--.. .-.|..-+++.+|..+|-+..
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 7665443 33455556677778888888899887766532221 223455678888888877754
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.25 E-value=26 Score=21.77 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHhcCCHHHHHHHHHHHh----hCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 20 YCKDRQVEKAYKIVEKMR----DEDISPD----VISYTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~----~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
..+.|++.+|.+.+.+.. ..+.... ....-.+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457899999966665553 3332221 12233345567788999999999998874
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.24 E-value=50 Score=25.04 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIE----KGH-KPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
-.+..-|.+.|++++|.++|+.+.. .|- .+...+...+..++...|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456667777777777777776632 121 123333344666666777777666655444
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=68.24 E-value=15 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=18.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG 59 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (272)
.+...+..-.|.++++.+.+.+..++..|.-..++.+.+.|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444445555555544444444444444444444444
No 403
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.94 E-value=50 Score=24.93 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=44.1
Q ss_pred CChhhHHHHHHHHHhC--CCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH---HHH-HHHh--
Q 048616 129 NDLRSSWNLYCRMMGT--GCLPNT---QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDV---LFD-LLCD-- 197 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~-~~~~-- 197 (272)
.++++|+..|+..-+. |-..+. ..+.-+....+..+++.+|+.+|+++....+..+..-|.. ++. ++|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555555555554221 111122 2233333344677899999999999887755444433322 111 1222
Q ss_pred cCCHHHHHHHHHHHHHc
Q 048616 198 MGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 198 ~g~~~~a~~~~~~~~~~ 214 (272)
..+.-.+...+++..+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 23444556666666554
No 404
>PRK09462 fur ferric uptake regulator; Provisional
Probab=67.73 E-value=37 Score=23.31 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChh
Q 048616 70 EMKEYGCYPDAAAYNAAIRNYCIA-KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR 132 (272)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (272)
.+.+.|..++..= ..++..+... +..-.|.++++.+.+.+...+..|..--+..+...|-..
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455666554433 3344444443 456778888888887776667777666677777776553
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.20 E-value=19 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=17.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 048616 193 DLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI 226 (272)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (272)
-++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 3455666666666666666654 5555444433
No 406
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.73 E-value=68 Score=25.96 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c-----CCCCCHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD----AAAYNAAIRNYCIAKRLRDASGLMDEMVE-K-----GLSPNAT 116 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~ 116 (272)
+++.+-.++.+.+.+...+++..+.... +.|. .....-++..+.+.+++..++..++.-.. . ...|...
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 3455666666777776666665555433 1222 23344566677778887777766643321 1 1222211
Q ss_pred hHHHHH--HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH--------HHhcCcH--------HHHHHHHHHHHH
Q 048616 117 TYNLFF--RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL--------CKRQEKV--------EIALQLWNDMVE 178 (272)
Q Consensus 117 ~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~--------~~a~~~~~~~~~ 178 (272)
.....- -.|...+++++|.-+|...... |....-...+.+ +...|+. ..|.++++.|..
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 111111 1245678999999999887642 333222222333 3344544 233333333220
Q ss_pred -------cCCCccHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH----HHHHHHhhhHHHHHHHH
Q 048616 179 -------KGFGSYILVSDVLFD----LLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRI----KALMELANKQEALQNLS 243 (272)
Q Consensus 179 -------~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~ 243 (272)
.-..........++. .+.+-++..-|......+-++.+.-=..||.+| +.-..+.+..+++.+..
T Consensus 260 pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~I 339 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYI 339 (422)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH
Confidence 000001111233332 234556677777777777666555445566654 22223445556666666
Q ss_pred HHHHhcC
Q 048616 244 NKMALFG 250 (272)
Q Consensus 244 ~~~~~~~ 250 (272)
-+|.+.|
T Consensus 340 lqmie~~ 346 (422)
T KOG2582|consen 340 LQMIEDG 346 (422)
T ss_pred HHHhccC
Confidence 6666544
No 407
>PHA03100 ankyrin repeat protein; Provisional
Probab=66.64 E-value=78 Score=26.65 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=9.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 196 CDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
+..|+.+ +++.+.+.|..|+.
T Consensus 258 ~~~~~~~----iv~~Ll~~gad~n~ 278 (480)
T PHA03100 258 VYNNNPE----FVKYLLDLGANPNL 278 (480)
T ss_pred HHcCCHH----HHHHHHHcCCCCCc
Confidence 4455543 33344455554443
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.61 E-value=28 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=7.1
Q ss_pred cCcHHHHHHHHHHHH
Q 048616 163 QEKVEIALQLWNDMV 177 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~ 177 (272)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 409
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=66.26 E-value=29 Score=22.49 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=18.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
+...+..-.|.++++++.+.+...+..|....+..+...|
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333344445555555554444444444444444444444
No 410
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=66.22 E-value=53 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
.-|......|+++.|.+...++.
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhC
Confidence 34445555666666665555543
No 411
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.03 E-value=13 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444444445555555554444444444444444444444
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.69 E-value=66 Score=25.16 Aligned_cols=99 Identities=9% Similarity=0.091 Sum_probs=63.6
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHH----cCCCccHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-
Q 048616 149 NTQSCMFLVKLCKRQEKVEIALQLWNDMVE----KGFGSYILVSD-VLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS- 222 (272)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~- 222 (272)
-...+..+...|++.++.+.+.+..++..+ .|.+.|....- .+.-.|....-+++-++..+.|.++|...+...
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356777888899999999988887776554 36666644322 233344555567888899999999998765542
Q ss_pred HHHH-HHHHHHhhhHHHHHHHHHHHH
Q 048616 223 FRRI-KALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 223 ~~~l-~~~~~~~~~~~~a~~~~~~~~ 247 (272)
|... .-.+...+++.+|..++-...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2221 112334456677776766654
No 413
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=64.54 E-value=60 Score=24.59 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
++|...++.-... ..+..+...+..++...++...+..+++.+.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3444444443222 2355555555566666666677777776664
No 414
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=64.51 E-value=26 Score=22.93 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (272)
.++..+...+..-.|.++++.+.+.+...+..|..--+..+.+.|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34444555555555666666666555555555555555555555543
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.31 E-value=73 Score=25.16 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----------cCChhhH
Q 048616 65 RDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----------SNDLRSS 134 (272)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 134 (272)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+...+.+|+.+... ..-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 478888888899999999988888888888999999999999863 3336666666653 6888888
Q ss_pred HHHHHH
Q 048616 135 WNLYCR 140 (272)
Q Consensus 135 ~~~~~~ 140 (272)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.75 E-value=39 Score=21.82 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
.|..++..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 457788888888888888888888876
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.70 E-value=85 Score=25.72 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 048616 54 GLGLVGQPDKARDVLKEMKEYGCYPDAA--AYNAAIRNYCI--AKRLRDASGLMDEMVEK 109 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 109 (272)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888876 555444 44555555543 45677888888776654
No 418
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.64 E-value=1.3e+02 Score=27.67 Aligned_cols=224 Identities=11% Similarity=-0.017 Sum_probs=119.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVI-------SYTSIIG-GLGLVGQPDKARDVLKEMKEY----GCYPDAAAYNAAIRN 89 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 89 (272)
...++.+|..++.++...-..|+.. .|+.+-. .....|++++|.++-+...+. -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4678999999998886642222221 2333322 234568889998888776643 233455667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHH---HHH--HHHhhcCChhh--HHHHHHHHHhC-----C-CCCCHhhHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYN---LFF--RVFYWSNDLRS--SWNLYCRMMGT-----G-CLPNTQSCMFL 156 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~~~~~~--a~~~~~~~~~~-----~-~~~~~~~~~~l 156 (272)
..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+... ....+...... . ..+-..+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888899999998887766542222333332 222 23445563322 22223222111 1 01223455555
Q ss_pred HHHHHhcC-cHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-HH---HHH--
Q 048616 157 VKLCKRQE-KVEIALQLWNDMVEKGFGSYILVS--DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-FR---RIK-- 227 (272)
Q Consensus 157 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~---~l~-- 227 (272)
+.++.+.. ...++..-+.--......|-.... ..|.+.....|+.++|...++++......++... |. ..+
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhH
Confidence 55555522 111222222221222222222222 3677888899999999999999876544432111 11 122
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 048616 228 ALMELANKQEALQNLSNK 245 (272)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~ 245 (272)
......|+.+.+.....+
T Consensus 667 ~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 667 ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcccCCHHHHHHHHHh
Confidence 233456777777666555
No 419
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.68 E-value=76 Score=24.84 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=58.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKE----YGCYPDAAAYNA-AIRNYCIAKRLRDASGLMDEMVEKGLSPNA--- 115 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 115 (272)
-...+..+..-|++.++.+.+.++..+..+ .|.+.|....-. |.-.|....-.++-++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356677888889999998888887766543 455555443322 222333344467777888888888764322
Q ss_pred -HhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 116 -TTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 116 -~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
.+|..+ .+....++.+|-.++....
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 233322 1223456777777766553
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.00 E-value=96 Score=25.43 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHh--cCChhHHHHHHHHHHHc
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVI--SYTSIIGGLGL--VGQPDKARDVLKEMKEY 74 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 74 (272)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 555554 45555565554 45678999999988765
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.58 E-value=84 Score=24.61 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=96.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-------hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVI-------SYTSIIGGLGLVGQPDKARDVLKEMKE----YGCYPDAAAYN 84 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 84 (272)
+.+-..+.+++++|+..+.++...|...+.. +...+...|.+.|+...--++.....+ ..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4566778899999999999999998876654 445677889999988776666544332 22122344556
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHhhcCChhhHHHHHH----HHHhCCCCCCHhhHH
Q 048616 85 AAIRNYCI-AKRLRDASGLMDEMVEKGLSPNA-----TTYNLFFRVFYWSNDLRSSWNLYC----RMMGTGCLPNTQSCM 154 (272)
Q Consensus 85 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~ 154 (272)
.++..+-. ...++.-+.+....++...+-.. ..=..++..+.+.|.+.+|+.+.. ++.+.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 66666543 34466666666666544222111 112357788999999999987664 445555566655443
Q ss_pred HHH-HHHHhcCcHHHHHHHH
Q 048616 155 FLV-KLCKRQEKVEIALQLW 173 (272)
Q Consensus 155 ~l~-~~~~~~~~~~~a~~~~ 173 (272)
.+= .+|-...++.++..-+
T Consensus 169 llESKvyh~irnv~KskaSL 188 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHH
Confidence 322 2333334444444333
No 422
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.29 E-value=1.5e+02 Score=27.31 Aligned_cols=197 Identities=10% Similarity=0.010 Sum_probs=108.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 048616 56 GLVGQPDKARDVLKEMKEYGCYPDA-------AAYNAAI-RNYCIAKRLRDASGLMDEMVEK----GLSPNATTYNLFFR 123 (272)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 123 (272)
....++.+|..++.++...-..|+. ..++.+- ......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999999888754222222 1233332 2234578899999888776654 22345556677777
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhh---HHHHH--HHHHhcCcH--HHHHHHHHHHHHc---CC---CccHHHHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQS---CMFLV--KLCKRQEKV--EIALQLWNDMVEK---GF---GSYILVSDV 190 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~--~~a~~~~~~~~~~---~~---~~~~~~~~~ 190 (272)
+..-.|++++|..+.++..+....-+... +..+. ..+..+|.. .+.+..+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988877654322223332 22222 234566633 2333333333322 10 122234444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHHHHHHHHHhcCCC
Q 048616 191 LFDLLCDM-GKLVEAEKSFLEMIEKGHKPSQVSFR--RIKALMELANKQEALQNLSNKMALFGPS 252 (272)
Q Consensus 191 li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (272)
+..++.+. +...++..-+.-.......|-...+. .++......|+.++|....+++......
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 55555442 22222323333222332233333333 4677888899999999999998766533
No 423
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=59.28 E-value=35 Score=20.17 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
+.+.|..++..++... +-++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4466666776666543 45567777777666554
No 424
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.04 E-value=1.4e+02 Score=27.00 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISP---DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
|+.+.+.+.+++|++..+..... .| ....+...|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45566778888888877665432 22 2345666777777788888887777777643 445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
++..... .-+.......+...|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 4433222 122222122345566666666555
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.87 E-value=17 Score=16.50 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHhhC
Q 048616 25 QVEKAYKIVEKMRDE 39 (272)
Q Consensus 25 ~~~~a~~~~~~~~~~ 39 (272)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555543
No 426
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.38 E-value=70 Score=23.33 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=86.0
Q ss_pred CCCCCcCHHhHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 3 EMGVKPDIVSYNCLIDVYCKDR----QVEKAYKIVEKMRDEDISPDVI----SYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
+.|.-+|...++.++..+.+.. .++-+.++=.+....++.++.. ....=+..|-+.|||.+--.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Confidence 3678888899998888776553 3444444444444455444332 1222234455566665554444443321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC
Q 048616 75 GCYPDAAAYNAAIRNYCIAKRLRD-----ASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN 149 (272)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (272)
+-+.++++. |+.+.++-.+ +| ..-|.....+-++.-+.+++-+.+ =
T Consensus 81 ---------------ce~~~dlq~~~~~va~~Ltkd~Kd---k~-~vPFceFAetV~k~~q~~e~dK~~----------L 131 (233)
T PF14669_consen 81 ---------------CEKFADLQRFCACVAEALTKDSKD---KP-GVPFCEFAETVCKDPQNDEVDKTL----------L 131 (233)
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHhcccc---cC-CCCHHHHHHHHhcCCccchhhhhh----------h
Confidence 111111111 1112222211 11 122444444444443333332222 0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC--------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 150 TQSCMFLVKLCKRQEKVEIALQLWNDMVEKG--------------FGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
-.+=.+++-.|-+.-++.++.++++.+.+.. ..+--...|.-...|.+.|.+|.|..++++
T Consensus 132 GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 132 GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 1122234455556666666666666654421 223344556666777777777777777763
No 427
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.73 E-value=82 Score=23.93 Aligned_cols=137 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
......|..|...-++.-|-...+++.+ ....-..+++ |.+..+-+--.++.+-....++.-+..-...++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHHc-CC-----------CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEK-GL-----------SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
...||..+|+.-++.-... |. .|.+.....++..|... ++++|.+++.++.+.|..|....-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHHHHHHH
No 428
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.35 E-value=1.4e+02 Score=26.45 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=32.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV 58 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (272)
+..+|. +|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345665 666788999999999999665543 344556677788887665
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.98 E-value=83 Score=23.75 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh-cCChhhHHHHHHHH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW-SNDLRSSWNLYCRM 141 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 141 (272)
.+...+-+.|+++++...++++...+...+..-.+.+-.+|-. -|....+++++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3556677778888888888888877666666666666666532 33344455555544
No 430
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.43 E-value=93 Score=24.14 Aligned_cols=223 Identities=9% Similarity=0.047 Sum_probs=133.2
Q ss_pred CCCCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 048616 39 EDISPDVISYTSIIGGL-GLVGQPDKARDVLKEMKEYGCYPDA---AAYNAAIRNYCIAKRLRDASGLMDEMVEK---GL 111 (272)
Q Consensus 39 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 111 (272)
.+..||+..=|..-.+- .+..++++|+.-|++..+....... .....++....+.+++++....+.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45567766544433322 2345789999999999875322222 24456788889999999999999888632 11
Q ss_pred C--CCHHhHHHHHHHHhhcCChhhHHHHHHHH----Hh-CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---
Q 048616 112 S--PNATTYNLFFRVFYWSNDLRSSWNLYCRM----MG-TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF--- 181 (272)
Q Consensus 112 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 181 (272)
. -+....|.++.-..-..+.+-...+|+.- .. .+-..-..|-+-+-..|...+.+.....+++++...--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 13445666666555555555555554432 11 11122334555677777788888888888888865310
Q ss_pred -Cc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHH-----HHhhhHHHHH-HHHHHH
Q 048616 182 -GS-------YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG-HKPSQVSFRRIKALM-----ELANKQEALQ-NLSNKM 246 (272)
Q Consensus 182 -~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~-~~~~~~ 246 (272)
.. -...|..=|..|....+-..-..++++..... --|.+.... +++-| .+.|.+++|. .+|+.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 13566677778888888888888888765432 234444333 33333 4566666654 566666
Q ss_pred HhcCCCCCCCHHHHHH
Q 048616 247 ALFGPSMIPKREEYLA 262 (272)
Q Consensus 247 ~~~~~~~~p~~~~~~~ 262 (272)
+...-.-.|-..|+..
T Consensus 259 KNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLK 274 (440)
T ss_pred hcccccCCcchhHHHH
Confidence 6554444566655443
No 431
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.25 E-value=1.5e+02 Score=26.66 Aligned_cols=27 Identities=0% Similarity=-0.047 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 188 SDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
|..+.+++.-..+.+.|.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 345677788888888888888888764
No 432
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=56.01 E-value=78 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDE 39 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 39 (272)
..+.++..+...|+++.|-+.|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455555566666666666666655543
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.50 E-value=1.1e+02 Score=24.59 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
.--+.+|+++|++..+.| ..+|+.- ..+...+. ..+.+.+.+...-..+-..+..+..+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~------~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSP------QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhcc------chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 345678888888887763 2233311 11111111 122233332222222233455555688999999999
Q ss_pred HHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 173 WNDMVEKGF-GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
++++.+.-. ..-..+...+++++....-+.++..++-+..+...
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 998876521 11123345688888888877777777766655433
No 434
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=1.7e+02 Score=26.58 Aligned_cols=150 Identities=15% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYP---DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (272)
++-+.+.+.+++|++..+..... .| -.......+..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34456677888888777665432 33 3456777888889999999999998888765 677787777777777
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH--------------H---HcCCCccHHHHHHH
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM--------------V---EKGFGSYILVSDVL 191 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~---~~~~~~~~~~~~~l 191 (272)
++......++ .......+...|..++..+.. .+...-.++..+- . +..-. +...-..|
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 7765544332 222222345567777766655 2222222211111 0 00111 12333558
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 048616 192 FDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~~~ 212 (272)
+..|...+++++|.+.+-...
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 888999999999999887765
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.71 E-value=98 Score=23.94 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 048616 60 QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI----AKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 112 (272)
+..+|.++|+...+.|. ......|..+|.. ..+..+|...|++..+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 44556666665554442 2222223333333 23555666666666555543
No 436
>PRK09857 putative transposase; Provisional
Probab=54.65 E-value=1e+02 Score=24.16 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGP 251 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (272)
..++....+.++.++..++++.+.+. ..+......+++.-+...|..+++.++.++|...|.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444445556665566666655544 222333444566666666666667777777777663
No 437
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=53.74 E-value=1.2e+02 Score=24.71 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHh-
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYG-----CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK----GLSPNATT- 117 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~- 117 (272)
..++..++...+.++++++.|+...+-. ......++..|.+.|.+..|+++|.-+..+..+. ++. |...
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence 3446667777778888888888776421 1123457788888888889988888766554432 322 2221
Q ss_pred H-----HHHHHHHhhcCChhhHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 118 Y-----NLFFRVFYWSNDLRSSWNLYCRMMG----TGCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 118 ~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
| .-+.-++-..|....|.+.-++..+ .|-.+ -......+.+.|-..|+.+.|+.-|+...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2233456667777777777766532 33222 23345566677888888888887776644
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.38 E-value=1.2e+02 Score=24.35 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHhhCCCCC-------------CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 048616 24 RQVEKAYKIVEKMRDEDISP-------------DVISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCYPDAAAYNAAIRN 89 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 89 (272)
++.+....++..+...+..| |...++.+..+ +..+.++-.+..++..+. |-.--...+.....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35555566666666555443 33333333322 112333444444444433 222233456666778
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHhh-cCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEK----GLSPNATTYNLFFRVFYW-SNDLRSSWNLYCRMMGTGCLPNT----QSCMFLVKLC 160 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 160 (272)
|++-||.+.|++.+++..+. |.+.|...+.+-+..+.. ..-..+-++-.+.+.+.|-..+. .+|..+- |
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ 191 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--C 191 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--H
Confidence 99999999999888776543 667677666554443333 22334555555556666544333 3444432 2
Q ss_pred HhcCcHHHHHHHHHHHHH
Q 048616 161 KRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~ 178 (272)
....++.+|-.+|-+...
T Consensus 192 msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 192 MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHhHHHHHHHHHHHcc
Confidence 345678888888776554
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.77 E-value=1.2e+02 Score=24.38 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh------cCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHH
Q 048616 96 LRDASGLMDEMVEKGLSPNATTYNLFFRVFYW------SNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 168 (272)
++++..++++....+. |.+......|.++.. .-+|.....+|+.+.... |+. ++.|-.+ +..+....+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhHHh
Confidence 3444455555444443 455555544444322 224444455555444332 222 2233222 2233334444
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 169 ALQLWNDMVEKG-FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 169 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
+..+.+-+...+ ..-....+..=...+.+.|+.++|..-|+.....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 444444444331 1111112222333445555555555555555543
No 440
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=52.73 E-value=44 Score=19.28 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 048616 185 ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALME 231 (272)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (272)
...++.+++..++-.-++++...+.+..+.|. .+..+|..-.+.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34445555555555555555555555555543 23334433333333
No 441
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.73 E-value=72 Score=21.77 Aligned_cols=88 Identities=6% Similarity=0.036 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 59 GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR---LRDASGLMDEMVE-KGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
+++-...+-+..-...+ .++..+--.+..++.+..+ ..+.+.+++++.+ ....-...-..-|.-++.+.++++++
T Consensus 12 ~d~~~~~e~~~rq~a~~-~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARS-DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred hhhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Q ss_pred HHHHHHHHhCCCCCC
Q 048616 135 WNLYCRMMGTGCLPN 149 (272)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (272)
.++.+.+.+. .||
T Consensus 91 ~~yvd~ll~~--e~~ 103 (149)
T KOG3364|consen 91 LRYVDALLET--EPN 103 (149)
T ss_pred HHHHHHHHhh--CCC
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.72 E-value=1.1e+02 Score=23.53 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----hhCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHH---cCC--CCCHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKM----RDEDISPDVISYTSIIGGLGLVGQPD-KARDVLKEMKE---YGC--YPDAAAYNA 85 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~ 85 (272)
-...+.+.|+...|-++-..+ .+.+.+++......++..+...+.-+ +-.++.+++.+ .+- .-++.....
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence 334455666655554443333 33455666655556665555443221 22333333332 111 124566667
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLM 103 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~ 103 (272)
+...|.+.|++.+|+..|
T Consensus 96 ~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHH
Confidence 777777777777777655
No 443
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.49 E-value=1.2e+02 Score=23.89 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 048616 96 LRDASGLMDEMVEKGL----SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQ 171 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (272)
.+.|.+.|++....+. ..++.....++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667777777776421 234555566666677777755544444444432 356666777788877888888888
Q ss_pred HHHHHHHcC-CCccHHHHHHHHHHHHhcCC--HHHHHHHHHH----HHHcCCCCcHHhHHHHHHH----HHHhhhHHHHH
Q 048616 172 LWNDMVEKG-FGSYILVSDVLFDLLCDMGK--LVEAEKSFLE----MIEKGHKPSQVSFRRIKAL----MELANKQEALQ 240 (272)
Q Consensus 172 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~ 240 (272)
+++.+...+ +++.. . ..++..+...+. .+.+.+++.. +.+. ..++......++.. +......+++.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888877754 44332 3 334444442333 3666666543 3222 22222233334433 33445556666
Q ss_pred HHHHH
Q 048616 241 NLSNK 245 (272)
Q Consensus 241 ~~~~~ 245 (272)
++++.
T Consensus 300 ~f~~~ 304 (324)
T PF11838_consen 300 EFFED 304 (324)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66654
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.88 E-value=1.3e+02 Score=24.16 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=61.0
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSF 208 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (272)
.-..+|+++|++..+.+ ..+|+ --+.+...|. ..+.+.+.+...-..+-..+.-+-.+.|+..+|.+.|
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~------~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYR-QSQQCQHQSP------QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhcc------chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34566777777765542 22332 1111222222 2223334432222333355666667899999999999
Q ss_pred HHHHHcCCCCcHHhHH---HHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 209 LEMIEKGHKPSQVSFR---RIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 209 ~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+++.+. .|-...++ .++.++....-+..+..++.+..+..
T Consensus 299 RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 299 RDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 998765 34333333 37888887777777777766655433
No 445
>PRK09857 putative transposase; Provisional
Probab=50.80 E-value=1.2e+02 Score=23.80 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
+..++....+.++.++..++++.+.+.. +........+.+-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4556665567777777777877776652 33334445667777788888888888899988888755
No 446
>PRK10941 hypothetical protein; Provisional
Probab=50.38 E-value=1.2e+02 Score=23.54 Aligned_cols=56 Identities=5% Similarity=-0.077 Sum_probs=23.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3344445555555555555544432 1122222222333444555555544444443
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.72 E-value=1.2e+02 Score=23.46 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 048616 24 RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL----VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK----- 94 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 94 (272)
.+..+|.++|...-+.|.. .....|...+.. ..+..+|..++++..+.|..+...+...+...|..-.
T Consensus 91 ~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 4578899999977776643 333445555544 4488999999999999986543333444444444421
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCC
Q 048616 95 --RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 95 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 146 (272)
+...|...+.+.-..+ +......+...|.. ..++.+|..+|...-+.|.
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2336777777777765 23333333333322 3466677777777766653
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.69 E-value=1.1e+02 Score=25.84 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNA-TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
-+...++++.|..++.+.++. .|+. ..|..-..++.+.+++..|+.=+...++.. +--...|..-..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 344455566666666665554 2322 222223345555555555555544444432 111222222223334444444
Q ss_pred HHHHHHHHHH
Q 048616 168 IALQLWNDMV 177 (272)
Q Consensus 168 ~a~~~~~~~~ 177 (272)
+|...|+...
T Consensus 90 ~A~~~l~~~~ 99 (476)
T KOG0376|consen 90 KALLDLEKVK 99 (476)
T ss_pred HHHHHHHHhh
Confidence 4444444433
No 449
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=49.61 E-value=2.3e+02 Score=26.62 Aligned_cols=164 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHH----HhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRV----FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
+++.++|..+...-..--+-+...+-.. =......++..++++....--...|.......+.. +......|..+
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~--k~D~r~da~kl 1169 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYAL--KEDTRPDAVKL 1169 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhc--ccCCcchHHHH
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGK----------------------LVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (272)
-..|.... +.+|+++++.|. .++-.+.|.++.+---..|..++..-...+
T Consensus 1170 k~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha 1241 (1304)
T KOG1114|consen 1170 KKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHA 1241 (1304)
T ss_pred HHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHH
Q ss_pred HHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 231 ELANKQEALQNLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
...|++..+.+++.++.+..- -.++...+..++.-|.++|
T Consensus 1242 ~~~~~yGr~lK~l~kliee~~-es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1242 KALGQYGRALKALLKLIEENG-ESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhC
No 450
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.47 E-value=63 Score=27.06 Aligned_cols=109 Identities=13% Similarity=-0.001 Sum_probs=68.6
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK 200 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (272)
...+...+.++.|..++.+.++. .|+... |..-..++.+.+++..|..=.....+.. +.....|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 44566778899999999998876 455444 4444467788888888887766666654 1112222222233444455
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhh
Q 048616 201 LVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANK 235 (272)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (272)
+.+|...|+.... +.|+..-+...+.-|.....
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHHH
Confidence 6666666666554 57888877777766655443
No 451
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=49.21 E-value=49 Score=22.53 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 048616 195 LCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228 (272)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (272)
+.+.|-+.+...++++|.++|+..+...|+.++.
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4456666677777777777777777666665443
No 452
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=49.13 E-value=1.6e+02 Score=24.70 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=55.1
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHc
Q 048616 143 GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDL--------LCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~ 214 (272)
...+.||..+.+-+...++..-..+-...+|+-..+.+ .|-...+-++|-. -.+...-+++.++++.|-..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34677888887777777777777777888888777765 4443333333321 12345567888888877544
Q ss_pred CCCCcHHhHHHHHHHHHH
Q 048616 215 GHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~ 232 (272)
=-.-|..-+-.|++.|..
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 222355556666666653
No 453
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=49.01 E-value=2.2e+02 Score=26.88 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=34.1
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 048616 162 RQEKVEIALQLWNDMVEKGFGSYI-LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (272)
....+.+++.+|..|...|+.... ..|...-..+.+.+.+.+|..+|..-++....|-...-.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~ 153 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLR 153 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 444556666666666666554333 334444455555666666666666665555555444333
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.40 E-value=1.3e+02 Score=23.53 Aligned_cols=112 Identities=9% Similarity=0.017 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
++....+.++.....+.+..+.. ...-...+..+...|++..|++++.+..+.- . ...-|.++=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHH
Confidence 34444555555555555555532 3334456777788999999999888765420 0 11111111111 112
Q ss_pred HHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 166 VEIALQLWNDMVEK-----GFGSYILVSDVLFDLLCDMGKLVEAEKSF 208 (272)
Q Consensus 166 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (272)
+++-......+.+. -...|+..|..++.+|.-.|+...+.+-+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23333333332221 11567778899999999888876655433
No 455
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=47.94 E-value=2.4e+02 Score=26.51 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDE 39 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~ 39 (272)
=+++.....++.|...|+++..+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~ 504 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRES 504 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhc
Confidence 35566677777888877777654
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.65 E-value=82 Score=20.97 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGS-YILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
.+.++|..|..+|+.. ....|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555666665554422 233455555555566666666666554
No 457
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.27 E-value=1.3e+02 Score=25.71 Aligned_cols=106 Identities=13% Similarity=-0.025 Sum_probs=68.2
Q ss_pred HHhcCCHHHHHHHHHHHhh---CCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCCH----
Q 048616 20 YCKDRQVEKAYKIVEKMRD---EDISPD-----VISYTSIIGGLGLVGQPDKARDVLKEMKE-------YGCYPDA---- 80 (272)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 80 (272)
+--.|++.+|.+++...-- .|...+ -..||.+.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3457899999888765421 221112 12245566666677777777777776653 4555422
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 81 -------AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 81 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
.+|| ..-.|...|++-.|.+.|.+..+. +..++..|.-+..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 344577889999999999888765 33478889888888864
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.92 E-value=19 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA-AAYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 100 (272)
..|.+++|++.|......+ ++....|..-.+.+.+.+++..|++=+....+.+ ||. .-|-.--.+-...|+|.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4566777777777666653 3355556666666777777777776666665542 332 22322233334457777777
Q ss_pred HHHHHHHHcCCCCCHH
Q 048616 101 GLMDEMVEKGLSPNAT 116 (272)
Q Consensus 101 ~~~~~~~~~~~~~~~~ 116 (272)
..+....+.+..+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 7777777766554443
No 459
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.78 E-value=1.5e+02 Score=23.86 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNT----QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLC 196 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (272)
++++.++..++.. .|+. ..|.++++.....|.++.++.+|++....|..|-..+-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555443 3333 3455666666666666667777776666666666555555555544
No 460
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.61 E-value=78 Score=20.43 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 118 YNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666654
No 461
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.25 E-value=1.3e+02 Score=22.92 Aligned_cols=118 Identities=8% Similarity=-0.059 Sum_probs=72.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCH
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDV-ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA-AYNAAIRNYCIAKRL 96 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 96 (272)
.|....+++.|+..|.+.... .|+. .-|..-+.++.+..+++.+.+=-.+..+. .|+.. ....+...+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 344556788888877766654 4555 44566677777888888777665555553 45544 334455666777888
Q ss_pred HHHHHHHHHHHH----cCCCCCHHhHHHHHHHHhhcCChhhHHHHHHH
Q 048616 97 RDASGLMDEMVE----KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCR 140 (272)
Q Consensus 97 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (272)
+.|+..+.+... ..+.+.......|..+--+.-...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888877643 33444455566666554444444444444443
No 462
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.05 E-value=39 Score=26.97 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=47.7
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHH
Q 048616 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI-LVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~ 205 (272)
..|.++.|++.|...+..+ ++....|.--.+++.+..+...|++=++.....+ ||. .-|-.=-.+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4455666666666665553 3344445444555556666666655555444432 221 12222222333456666776
Q ss_pred HHHHHHHHcCCCCcHH
Q 048616 206 KSFLEMIEKGHKPSQV 221 (272)
Q Consensus 206 ~~~~~~~~~~~~p~~~ 221 (272)
..|....+.+..+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 6666666665554443
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.01 E-value=1.4e+02 Score=23.31 Aligned_cols=112 Identities=11% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS 128 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (272)
-.++....+.++.....+.++.+.. ...-...+..+...|++..|++++.+..+.- . +...|+.+=..-.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~-- 171 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSS-- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhH--
Confidence 3355556666666666666666643 2233345666778889999988887766430 0 1111121111111
Q ss_pred CChhhHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 048616 129 NDLRSSWNLYCRMMGT-----GCLPNTQSCMFLVKLCKRQEKVEIALQ 171 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (272)
++++-....+++.+. -..-|...|..+..+|.-.|+.+.+.+
T Consensus 172 -~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 -QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 112222222222111 114677889999999988887666553
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.85 E-value=1.7e+02 Score=23.68 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSY----ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
-.+++..++.++... .|+ ..-|-.+.......|.+++++.+|++.+..|..|=...-..++..+..
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 345667777776654 333 345677888888999999999999999999999988877777777663
No 465
>PRK10941 hypothetical protein; Provisional
Probab=44.74 E-value=1.5e+02 Score=23.03 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHH
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKG-LSPNATTYNLFFRVF 125 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 125 (272)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4556667888999999999999988764 3455666666777889999999988888877653 234444444444443
No 466
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=44.61 E-value=1.1e+02 Score=21.78 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 048616 100 SGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (272)
.+++..+.+.|..-|...-...+..-.+.| ..-..+.+++.+.| .+..+....+..+......+.|..++..
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG--i~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG--IDDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC--CCHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 334444444444333333333333333333 23334444455555 2333444444434444444444444443
No 467
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.08 E-value=1.4e+02 Score=22.45 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=10.2
Q ss_pred HHHHHhhcCChhhHHHHHHH
Q 048616 121 FFRVFYWSNDLRSSWNLYCR 140 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~ 140 (272)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.90 E-value=1.3e+02 Score=22.28 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=11.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.....+.|+.++|.+.|.++...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 33444455555555555555443
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.81 E-value=2.2e+02 Score=24.70 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHH
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3555566666666666666555
No 470
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.55 E-value=2.5e+02 Score=25.45 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHhHHHHHHHH
Q 048616 61 PDKARDVLKEMKEYGCYPDAAAY-NAAIRNYCIAKRLRDASGLMDEMV-EKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~ 125 (272)
..+.+...+.+.+..-.|+..+- -.+-..|...|++++|+++--... ...+.+++..+..++.-|
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~ 105 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKC 105 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHH
Confidence 34445555555544333333332 222356777788888887654443 224455566555555444
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.04 E-value=80 Score=19.49 Aligned_cols=41 Identities=17% Similarity=0.008 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
++|+-....|+..|...|..+++.+.-.--++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=42.73 E-value=2.6e+02 Score=25.31 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-------------cHHHHHHHHHHH
Q 048616 130 DLRSSWNLYCRM-MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-------------YILVSDVLFDLL 195 (272)
Q Consensus 130 ~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~li~~~ 195 (272)
..++....+... ...|+..+......+++.. .|++..+..+++++...+-.. +......+++++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 048616 196 CDMGKLVEAEKSFLEMIEKGHKPSQVS 222 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (272)
.. ++...++.+++++...|..+....
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHH
No 473
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.36 E-value=1e+02 Score=20.62 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-HHHHHHHhhhHHHHHHHHH
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR-IKALMELANKQEALQNLSN 244 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~ 244 (272)
.++.-++.-.|..++|.+++.... --++-...|. ++..|.++.+.+++.++-+
T Consensus 70 EAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 70 EALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444444555555555444331 1112222333 4555555555444444433
No 474
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.45 E-value=2.4e+02 Score=24.62 Aligned_cols=231 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDE 105 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (272)
.+...++.+.....--.+....|..+++.+.... .+.-.++++++.. .. ...+..++++....|......-+.+.
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~ 365 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQW 365 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HHHcCCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCc-------HHHHH
Q 048616 106 MVEKGLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT-------QSCMFLVKLCKRQEK-------VEIAL 170 (272)
Q Consensus 106 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~-------~~~a~ 170 (272)
+....+.+ .....-..+-.....-..+-...+++-+......+.. .++..+++-+|.... -+-..
T Consensus 366 i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~ 445 (574)
T smart00638 366 IKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK 445 (574)
T ss_pred HHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHh--hhHHHHHHHHHHHHh
Q 048616 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELA--NKQEALQNLSNKMAL 248 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 248 (272)
.+.+.+.+.--.-+..--...|.++.+.|. ..+...+..........+...-...+.++.+. ...+.+..++-.+-.
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Q ss_pred cCCCCCCCHHHHHHhh
Q 048616 249 FGPSMIPKREEYLAEM 264 (272)
Q Consensus 249 ~~~~~~p~~~~~~~ll 264 (272)
.. -.|...-..+++
T Consensus 525 n~--~e~~EvRiaA~~ 538 (574)
T smart00638 525 NR--AEPPEVRMAAVL 538 (574)
T ss_pred CC--CCChHHHHHHHH
No 475
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.49 E-value=2.2e+02 Score=23.79 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHH
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEK--GLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
--|++...-.|+.+...+.++.+... |-.|. .+| .-+.-+|...+++.+|.+.|-..
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHH
Confidence 44566666778877666667666543 22222 233 33556777788888888888665
No 476
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.43 E-value=2e+02 Score=23.45 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=68.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH--------HhhcCCh--------hhHHHHHHHHH-------hCCC
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV--------FYWSNDL--------RSSWNLYCRMM-------GTGC 146 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~--------~~a~~~~~~~~-------~~~~ 146 (272)
|...++++.|+.++...+-. |....-...+.+ +.-.|.. ..|...++.|. +--.
T Consensus 193 ciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~ 269 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYL 269 (422)
T ss_pred eeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHh
Confidence 45678999999999888754 332222223333 2334443 22333333331 0000
Q ss_pred CCCHhhHHHHHHH----HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 147 LPNTQSCMFLVKL----CKRQEKVEIALQLWNDMVEKGFGSYILVSDVL----FDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 147 ~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
.-...+...++.. +.+-++..-+......+.++++..-..+|..+ |.-.++.+..++|.+..-+|.+.|
T Consensus 270 ~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 270 KDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred cCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 1111124444433 34567777777777777777666556666554 333446778888888888887764
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.42 E-value=2.2e+02 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=13.7
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhh
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
.+.+.|+.++..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666655544333
No 478
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.37 E-value=71 Score=18.15 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=8.1
Q ss_pred hcCcHHHHHHHHHHHH
Q 048616 162 RQEKVEIALQLWNDMV 177 (272)
Q Consensus 162 ~~~~~~~a~~~~~~~~ 177 (272)
..|++-+|-++++++-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 4555555555555554
No 479
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.00 E-value=1.6e+02 Score=22.08 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHhh--cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048616 118 YNLFFRVFYW--SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLL 195 (272)
Q Consensus 118 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (272)
|...+.++-. .++++.|.+.+-. -.+.|+. -.-++.++...|+.+.|..+++...-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 4555666543 4666777766622 2222222 2247777878899999999998754322 122223333444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh
Q 048616 196 CDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (272)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 67799999998887765421 1346666777666444
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.47 E-value=2.2e+02 Score=23.64 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
..+.-+.+.|...|+++.|++.|.+.+.- ..+-....|-.+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35667777888888888888888875442 11223445666666666777877777666666543
No 481
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.07 E-value=95 Score=21.22 Aligned_cols=35 Identities=3% Similarity=-0.091 Sum_probs=22.5
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
+.+.|-..+...++++|.+.|+..+..+|+.+++-
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 34455666666777777777777777776666553
No 482
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=38.97 E-value=2e+02 Score=22.83 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=50.0
Q ss_pred hHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-------------HHHHHHHHHHHHhc
Q 048616 133 SSWNLYCRM-MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY-------------ILVSDVLFDLLCDM 198 (272)
Q Consensus 133 ~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~~ 198 (272)
+...++++. .+.|+..+......++... .|++..+...++.....+-..+ ......++++. ..
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~~ 264 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-EA 264 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-Hc
Confidence 344445443 3456666676776666654 6788887777765543211111 11223344443 55
Q ss_pred CCHHHHHHHHHHHH-HcCCCCc
Q 048616 199 GKLVEAEKSFLEMI-EKGHKPS 219 (272)
Q Consensus 199 g~~~~a~~~~~~~~-~~~~~p~ 219 (272)
|+..+|..++.++. +.|..|.
T Consensus 265 ~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 265 GDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCCHH
Confidence 78999999999986 6777655
No 483
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=38.46 E-value=94 Score=19.02 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 048616 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMR 37 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 37 (272)
+.|+...||.+++.....+.+.-|..++.+..
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 56777777777777777777766666655544
No 484
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.30 E-value=1.1e+02 Score=19.95 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=8.0
Q ss_pred cCcHHHHHHHHHHHHHcC
Q 048616 163 QEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~ 180 (272)
....++|+++++.|.++|
T Consensus 74 C~T~EEALEVInylek~G 91 (128)
T PF09868_consen 74 CKTDEEALEVINYLEKRG 91 (128)
T ss_pred hCcHHHHHHHHHHHHHhC
Confidence 334444444444444444
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.03 E-value=3.8e+02 Score=25.94 Aligned_cols=155 Identities=10% Similarity=-0.006 Sum_probs=86.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----------------------CCCCC-----HHhHHHHHHHHhhcCChhhHHHHHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEK-----------------------GLSPN-----ATTYNLFFRVFYWSNDLRSSWNLYCR 140 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (272)
+|...|...+|+..|.+.... |-.|+ .+-|...++.+-+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 366778888888887765321 21222 23466677777777777777777666
Q ss_pred HHhCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH------------HH
Q 048616 141 MMGTGCLPN----TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV------------EA 204 (272)
Q Consensus 141 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~a 204 (272)
.++. ++++ ..+++.+.+.....|.+-+|...+-..... ..-......++-.++..|.++ +.
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 6554 2222 235666777777777777776655332111 112234556666677777655 33
Q ss_pred HH-HHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHH-HHHH
Q 048616 205 EK-SFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL-SNKM 246 (272)
Q Consensus 205 ~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~ 246 (272)
.. +++...+...--...-|+.|...+...+++.+|-.+ |+..
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEya 1129 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYA 1129 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 33 233222221111223466677777777777776554 4443
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.82 E-value=1.1e+02 Score=19.57 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 048616 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY 118 (272)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (272)
..+.+++....+....+.....|.-.|++.|+.+.|.+-|+.=... -|.+.+|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 3444555554443333334444555577777777777776654432 4455444
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.77 E-value=3e+02 Score=24.60 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=56.6
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLPN------TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
..+..++..+.+.|..-... ++.| ......+--+|.+..+++.|.+++.+..+.+ +.+..+--.+..++...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh
Confidence 34556677777776543322 1112 2345566667778889999999999988876 33444555566777888
Q ss_pred CCHHHHHHHHHHHH
Q 048616 199 GKLVEAEKSFLEMI 212 (272)
Q Consensus 199 g~~~~a~~~~~~~~ 212 (272)
|.-++|+.+.....
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 88888888776554
No 488
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.75 E-value=3e+02 Score=24.65 Aligned_cols=60 Identities=7% Similarity=0.075 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH-HHHHHHHHhhhHHHHHHHHHHHH
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.....-+..-.+.++++.+...+..|.... . +...|. -+.+++...|+.++|..+|+++.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEA-K-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhh-c-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344445555568889998888888875432 2 222233 37778777899999999998864
No 489
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=37.64 E-value=1.2e+02 Score=19.89 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGL 111 (272)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (272)
+..++..+.+.|.-.|.......+....+.+. .....+-.++.+.|+
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi 57 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGI 57 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCC
Confidence 34444444444444333333344443333111 122334444444444
No 490
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=37.60 E-value=1.2e+02 Score=19.88 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 048616 99 ASGLMDEMV 107 (272)
Q Consensus 99 a~~~~~~~~ 107 (272)
+.+.+.++.
T Consensus 8 ~~~~L~~Lk 16 (113)
T PF08870_consen 8 AKEQLKKLK 16 (113)
T ss_pred HHHHHHHHH
Confidence 333444433
No 491
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.43 E-value=1.9e+02 Score=22.16 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=74.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHhhcCChh
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDA-AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT-YNLFFRVFYWSNDLR 132 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 132 (272)
|.....+..|+..+.+.... .|+. .-|+.-+-++.+..+++.+..=-.+.++. .|+..- ...+-..+.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33456678888877777664 5666 44556677788888888887766666654 455443 334455667788899
Q ss_pred hHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 133 SSWNLYCRM----MGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 133 ~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
.|+..+.+. .+..+++-......|..+--+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999888876 33444455556666666644444555555555443
No 492
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.37 E-value=1.8e+02 Score=21.89 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC---CHhhHH--HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH
Q 048616 112 SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP---NTQSCM--FLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186 (272)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (272)
.+...-++.|+--|.-...+.+|.+.|.. +.++.| |..++. .-|+.....|+++.|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34445556666555555555555555533 333333 222222 34445567777777777776665443333322
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHH
Q 048616 187 VSDVLFD----LLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 187 ~~~~li~----~~~~~g~~~~a~~~~~~ 210 (272)
.+-.+.. -..+.|..++|+++++.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222111 12355556666665544
No 493
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=37.05 E-value=1.1e+02 Score=19.53 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcC
Q 048616 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG--QPDKARDVLKEMKEYG 75 (272)
Q Consensus 14 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 75 (272)
..++..|...+++++|.+-+.++.... -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 446677888889998888888875432 22334444555555443 2344555566666554
No 494
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=36.91 E-value=1.6e+02 Score=21.12 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
..+++..+.+.|...|...-...+..-.+.| ..-..+..++.+.|+ +..+-...+..+......+.|..++..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4555666666666656555555566555555 445677788888886 455556666666666666667766665433
Q ss_pred C-CCCCCHhhHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 048616 144 T-GCLPNTQSCMFLVKLCKRQE-KVEIALQLWNDMV 177 (272)
Q Consensus 144 ~-~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 177 (272)
. +.+|+..-..-+.+.+...| .++.+..++..+.
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 3 23455444444455554454 4444555554443
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.83 E-value=91 Score=18.35 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 197 DMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
..|+.+.+.+++++..+.|..|.......+..+...
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555666666666655555554444434444433
No 496
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.73 E-value=2.5e+02 Score=23.38 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--C----C-CCCHHhHHHHHHHHhhcCChhhHHHHHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEK--G----L-SPNATTYNLFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
...|++..+-.||+..|+++++.+.-. + + .-...++.-+.-+|...+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788899999999998766421 1 1 112345666777888999999999998775
No 497
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.68 E-value=2.1e+02 Score=22.49 Aligned_cols=82 Identities=9% Similarity=-0.062 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048616 131 LRSSWNLYCRMMGTGC----LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEK 206 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (272)
...|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 3667788888776422 345556666777777888877666666655543 345666788999999999999999
Q ss_pred HHHHHHHcC
Q 048616 207 SFLEMIEKG 215 (272)
Q Consensus 207 ~~~~~~~~~ 215 (272)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 999988754
No 498
>COG0819 TenA Putative transcription activator [Transcription]
Probab=36.60 E-value=1.8e+02 Score=21.72 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhhcCChhhHH-----------HHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 104 DEMVEKGLSPNATTYNLFFRVFYWSNDLRSSW-----------NLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
+.+.+....|....|...+...+..|++.+.. ++..++.+....+....|...++.|+...-.+.+..+
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
.+.+-+..-..+..-...+...+...-+++.+.
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~F 210 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTASRFELAF 210 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.41 E-value=2.8e+02 Score=23.81 Aligned_cols=31 Identities=3% Similarity=-0.052 Sum_probs=15.7
Q ss_pred CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 110 GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
|+..+......++ -...|+...|+.++++..
T Consensus 197 gi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 197 NVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred CCCCCHHHHHHHH--HHcCChHHHHHHHHHHHH
Confidence 4444444444332 234466666666666543
No 500
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.24 E-value=2.2e+02 Score=22.67 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=35.9
Q ss_pred hhcCChhhHHHHH-HHHHhCCCCCCHh----hHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 126 YWSNDLRSSWNLY-CRMMGTGCLPNTQ----SCMFLVKLCKRQEK-VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 126 ~~~~~~~~a~~~~-~~~~~~~~~~~~~----~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
.+...+++..... ++|.+.+ -|+.. .|..++++-.-..+ -.-|.+.+++ ...|..|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCC
Confidence 3344455554444 3455554 45544 35555554322211 1112233332 346778899999999
Q ss_pred CHHHHH
Q 048616 200 KLVEAE 205 (272)
Q Consensus 200 ~~~~a~ 205 (272)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877543
Done!