Query 048616
Match_columns 272
No_of_seqs 488 out of 1282
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 19:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.1E-38 1.4E-42 256.8 24.8 208 27-234 7-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.2E-38 2.1E-42 255.7 24.8 197 2-198 17-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.9E-26 6.4E-31 193.7 31.3 257 7-271 302-564 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.1E-24 3.8E-29 183.0 31.0 238 8-250 337-580 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-20 4.1E-25 150.4 31.1 238 7-249 64-334 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-20 6.2E-25 149.3 30.3 232 13-250 138-369 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.3E-20 1.8E-24 149.3 28.8 236 8-250 24-287 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.1E-20 3.1E-24 147.9 29.7 233 9-248 59-323 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.9 1.6E-22 5.5E-27 171.3 12.6 151 9-164 126-286 (1134)
10 4eqf_A PEX5-related protein; a 99.9 5.5E-20 1.9E-24 145.3 22.8 238 9-250 64-311 (365)
11 3hym_B Cell division cycle pro 99.9 7.5E-19 2.6E-23 136.6 27.5 228 16-248 62-298 (330)
12 1fch_A Peroxisomal targeting s 99.9 5.5E-19 1.9E-23 139.6 26.1 237 9-250 63-315 (368)
13 3spa_A Mtrpol, DNA-directed RN 99.9 2.3E-21 7.7E-26 164.4 12.2 120 115-234 127-250 (1134)
14 3hym_B Cell division cycle pro 99.9 1.9E-18 6.6E-23 134.2 28.0 241 5-250 17-266 (330)
15 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.4E-23 133.8 25.6 236 9-250 20-270 (327)
16 3uq3_A Heat shock protein STI1 99.8 1.1E-17 3.6E-22 125.5 25.6 244 9-266 4-255 (258)
17 4eqf_A PEX5-related protein; a 99.8 2E-18 6.9E-23 136.4 22.1 233 8-245 97-352 (365)
18 3mkr_A Coatomer subunit epsilo 99.8 2.1E-17 7.2E-22 126.4 26.8 232 11-260 35-271 (291)
19 3ieg_A DNAJ homolog subfamily 99.8 5.8E-17 2E-21 127.2 30.0 237 9-250 2-264 (359)
20 3ieg_A DNAJ homolog subfamily 99.8 9.1E-17 3.1E-21 126.1 30.9 235 10-249 37-335 (359)
21 2pl2_A Hypothetical conserved 99.8 5.4E-18 1.8E-22 124.2 22.0 199 7-211 2-211 (217)
22 1fch_A Peroxisomal targeting s 99.8 5.3E-18 1.8E-22 133.9 22.9 234 8-245 96-355 (368)
23 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.1E-22 129.6 23.6 235 8-247 53-313 (327)
24 3u4t_A TPR repeat-containing p 99.8 1.2E-16 3.9E-21 121.0 26.7 249 9-265 2-262 (272)
25 2gw1_A Mitochondrial precursor 99.8 2.8E-17 9.6E-22 135.3 25.1 243 8-260 235-485 (514)
26 2gw1_A Mitochondrial precursor 99.8 3.1E-17 1E-21 135.1 25.1 237 8-250 37-402 (514)
27 2ho1_A Type 4 fimbrial biogene 99.8 3.1E-16 1.1E-20 117.3 28.1 212 45-264 37-249 (252)
28 2vq2_A PILW, putative fimbrial 99.8 3.1E-16 1.1E-20 115.0 27.5 213 45-264 8-222 (225)
29 3mkr_A Coatomer subunit epsilo 99.8 4.4E-17 1.5E-21 124.6 23.6 221 17-250 6-230 (291)
30 1ouv_A Conserved hypothetical 99.8 1.6E-15 5.4E-20 114.9 30.7 224 9-250 5-252 (273)
31 2pl2_A Hypothetical conserved 99.8 5.8E-17 2E-21 118.7 21.4 200 42-247 2-212 (217)
32 2ho1_A Type 4 fimbrial biogene 99.8 2.6E-16 8.7E-21 117.7 25.4 209 10-224 37-246 (252)
33 2vq2_A PILW, putative fimbrial 99.8 6E-16 2.1E-20 113.5 26.7 213 8-225 6-220 (225)
34 2h6f_A Protein farnesyltransfe 99.8 7.4E-16 2.5E-20 121.8 27.7 242 9-261 96-356 (382)
35 2q7f_A YRRB protein; TPR, prot 99.8 9.5E-17 3.2E-21 119.3 21.1 201 9-214 22-222 (243)
36 3fp2_A TPR repeat-containing p 99.8 1.6E-15 5.6E-20 125.5 28.2 234 11-250 244-492 (537)
37 3fp2_A TPR repeat-containing p 99.8 2.2E-15 7.7E-20 124.7 28.3 163 83-250 246-408 (537)
38 2q7f_A YRRB protein; TPR, prot 99.8 4.9E-16 1.7E-20 115.4 21.2 203 43-250 21-223 (243)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.9E-16 3.1E-20 116.2 22.3 224 21-250 16-245 (275)
40 1b89_A Protein (clathrin heavy 99.7 1.2E-17 4.2E-22 131.5 10.6 205 8-247 30-234 (449)
41 2ond_A Cleavage stimulation fa 99.7 2.6E-14 8.8E-19 110.3 29.1 239 9-251 7-272 (308)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-15 7.7E-20 113.9 21.3 225 9-243 42-269 (275)
43 3vtx_A MAMA; tetratricopeptide 99.7 3.2E-14 1.1E-18 101.2 22.3 164 46-213 6-169 (184)
44 4abn_A Tetratricopeptide repea 99.7 2.1E-14 7E-19 117.3 23.7 215 26-246 84-318 (474)
45 3uq3_A Heat shock protein STI1 99.7 2.6E-14 8.9E-19 106.9 22.3 193 45-250 5-203 (258)
46 3vtx_A MAMA; tetratricopeptide 99.7 5.1E-14 1.7E-18 100.1 22.5 175 78-260 3-177 (184)
47 3nf1_A KLC 1, kinesin light ch 99.6 2.2E-14 7.4E-19 110.3 18.9 243 7-250 24-308 (311)
48 3nf1_A KLC 1, kinesin light ch 99.6 3.4E-14 1.2E-18 109.2 18.9 171 44-214 26-224 (311)
49 1ouv_A Conserved hypothetical 99.6 2.5E-12 8.4E-17 97.3 28.3 192 44-250 5-216 (273)
50 3u4t_A TPR repeat-containing p 99.6 2.8E-13 9.7E-18 102.2 21.6 208 9-221 36-255 (272)
51 2h6f_A Protein farnesyltransfe 99.6 9E-13 3.1E-17 104.2 24.6 215 9-231 130-364 (382)
52 2ond_A Cleavage stimulation fa 99.6 1.7E-12 5.9E-17 100.0 25.7 202 9-214 49-270 (308)
53 4abn_A Tetratricopeptide repea 99.6 7.8E-14 2.7E-18 113.9 18.7 197 8-210 100-317 (474)
54 4a1s_A PINS, partner of inscut 99.6 5.3E-14 1.8E-18 112.7 17.3 239 10-249 48-332 (411)
55 1b89_A Protein (clathrin heavy 99.6 1.1E-14 3.7E-19 114.9 12.8 195 8-232 59-253 (449)
56 3as5_A MAMA; tetratricopeptide 99.6 1.1E-12 3.7E-17 92.9 20.9 165 10-178 8-172 (186)
57 3ulq_A Response regulator aspa 99.6 1.9E-12 6.4E-17 102.9 23.4 232 16-250 109-369 (383)
58 4i17_A Hypothetical protein; T 99.6 4.8E-12 1.6E-16 93.1 23.7 207 43-264 5-220 (228)
59 2ooe_A Cleavage stimulation fa 99.6 1E-11 3.6E-16 102.8 28.3 236 11-250 231-493 (530)
60 3as5_A MAMA; tetratricopeptide 99.6 6E-13 2E-17 94.2 17.9 162 47-212 10-171 (186)
61 3sf4_A G-protein-signaling mod 99.6 5.8E-13 2E-17 106.2 19.8 243 6-249 5-296 (406)
62 2xm6_A Protein corresponding t 99.6 7.9E-11 2.7E-15 96.6 32.1 222 9-248 38-287 (490)
63 3ro2_A PINS homolog, G-protein 99.6 4.6E-13 1.6E-17 103.8 18.0 239 10-249 5-292 (338)
64 2xm6_A Protein corresponding t 99.6 8E-11 2.7E-15 96.6 32.0 189 10-213 75-287 (490)
65 4i17_A Hypothetical protein; T 99.6 5.5E-12 1.9E-16 92.8 22.7 202 8-223 5-216 (228)
66 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.5E-18 109.9 15.3 240 11-250 87-373 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.5 9.7E-13 3.3E-17 112.0 20.3 166 9-178 8-173 (723)
68 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5.2E-17 110.7 20.9 166 44-213 8-173 (723)
69 3edt_B KLC 2, kinesin light ch 99.5 5.4E-13 1.9E-17 101.0 15.7 227 21-249 12-281 (283)
70 3ro2_A PINS homolog, G-protein 99.5 1E-12 3.5E-17 101.8 17.4 241 10-250 43-333 (338)
71 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 106.8 15.5 240 10-249 47-336 (406)
72 3q15_A PSP28, response regulat 99.5 1.7E-11 5.8E-16 97.2 23.3 229 17-249 108-365 (378)
73 3edt_B KLC 2, kinesin light ch 99.5 1.1E-12 3.6E-17 99.3 15.3 160 55-214 11-198 (283)
74 4g1t_A Interferon-induced prot 99.5 3E-10 1E-14 92.5 30.6 219 7-230 48-291 (472)
75 4g1t_A Interferon-induced prot 99.5 2.8E-11 9.4E-16 98.7 22.8 246 10-260 136-469 (472)
76 2ooe_A Cleavage stimulation fa 99.5 6.9E-11 2.3E-15 98.0 24.6 202 9-214 271-492 (530)
77 3qky_A Outer membrane assembly 99.4 1.2E-10 4E-15 87.5 22.4 190 9-220 14-228 (261)
78 1qqe_A Vesicular transport pro 99.4 2E-11 7E-16 93.3 18.2 194 52-247 44-267 (292)
79 1hz4_A MALT regulatory protein 99.4 9.8E-11 3.4E-15 92.5 22.5 237 12-248 55-321 (373)
80 1hz4_A MALT regulatory protein 99.4 2.1E-10 7E-15 90.7 24.2 237 13-249 17-282 (373)
81 3mv2_B Coatomer subunit epsilo 99.4 2.8E-10 9.7E-15 86.1 23.5 180 64-250 85-283 (310)
82 1qqe_A Vesicular transport pro 99.4 7.5E-11 2.6E-15 90.1 19.8 203 11-213 38-268 (292)
83 2fo7_A Synthetic consensus TPR 99.4 7.1E-11 2.4E-15 78.7 17.3 129 12-143 3-131 (136)
84 1xi4_A Clathrin heavy chain; a 99.4 3.9E-10 1.3E-14 99.8 25.4 203 10-247 1105-1307(1630)
85 2fo7_A Synthetic consensus TPR 99.4 1.3E-10 4.3E-15 77.5 17.8 125 86-213 7-131 (136)
86 2pzi_A Probable serine/threoni 99.4 2.1E-10 7E-15 97.8 22.6 174 21-200 402-583 (681)
87 3urz_A Uncharacterized protein 99.4 1.8E-10 6.1E-15 83.5 19.3 134 85-224 59-194 (208)
88 3ulq_A Response regulator aspa 99.4 6.4E-11 2.2E-15 94.0 18.0 203 9-214 142-368 (383)
89 3qky_A Outer membrane assembly 99.4 3.9E-10 1.3E-14 84.6 21.4 186 44-250 14-225 (261)
90 3mv2_B Coatomer subunit epsilo 99.3 3.9E-10 1.3E-14 85.4 19.8 183 29-220 85-286 (310)
91 3rjv_A Putative SEL1 repeat pr 99.3 9.1E-10 3.1E-14 80.0 20.5 177 28-216 4-199 (212)
92 3q15_A PSP28, response regulat 99.3 3.6E-10 1.2E-14 89.6 19.7 200 10-213 141-364 (378)
93 3urz_A Uncharacterized protein 99.3 4.3E-10 1.5E-14 81.4 18.3 134 120-261 59-194 (208)
94 1xi4_A Clathrin heavy chain; a 99.3 1.6E-09 5.6E-14 96.0 24.2 193 16-246 1055-1247(1630)
95 3rjv_A Putative SEL1 repeat pr 99.3 3.1E-09 1E-13 77.2 21.4 177 62-250 3-198 (212)
96 3dra_A Protein farnesyltransfe 99.3 1.6E-08 5.5E-13 77.2 26.0 235 19-261 42-296 (306)
97 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.2E-09 7.6E-14 78.7 20.7 185 44-250 3-214 (225)
98 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.9E-09 1.3E-13 77.3 21.7 188 9-215 3-214 (225)
99 2pzi_A Probable serine/threoni 99.3 2.6E-10 8.8E-15 97.2 17.5 172 56-234 402-582 (681)
100 2vsy_A XCC0866; transferase, g 99.3 4.3E-10 1.5E-14 94.0 17.8 154 23-180 2-158 (568)
101 4ga2_A E3 SUMO-protein ligase 99.3 1E-10 3.6E-15 80.1 11.7 143 18-164 5-148 (150)
102 3qou_A Protein YBBN; thioredox 99.3 6E-10 2E-14 84.9 17.0 168 77-248 114-283 (287)
103 3qou_A Protein YBBN; thioredox 99.3 6.2E-10 2.1E-14 84.8 17.0 168 42-213 114-283 (287)
104 2r5s_A Uncharacterized protein 99.2 2E-10 6.8E-15 80.9 12.7 78 134-212 93-171 (176)
105 2vsy_A XCC0866; transferase, g 99.2 9.8E-10 3.3E-14 91.8 18.3 155 58-216 2-159 (568)
106 2r5s_A Uncharacterized protein 99.2 4.5E-10 1.5E-14 79.1 13.3 156 16-175 12-169 (176)
107 2ifu_A Gamma-SNAP; membrane fu 99.2 2.2E-09 7.4E-14 82.6 18.1 215 22-241 3-253 (307)
108 4e6h_A MRNA 3'-END-processing 99.2 1.3E-08 4.3E-13 86.1 23.7 237 11-250 303-571 (679)
109 3e4b_A ALGK; tetratricopeptide 99.2 2E-08 6.8E-13 81.5 23.2 188 47-250 178-388 (452)
110 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-10 6.4E-15 78.8 9.6 142 54-199 6-148 (150)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.3E-08 4.5E-13 73.6 19.1 131 10-145 6-151 (213)
112 3e4b_A ALGK; tetratricopeptide 99.1 8.4E-09 2.9E-13 83.7 19.6 226 9-250 68-352 (452)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 8.4E-09 2.9E-13 79.3 17.8 194 11-207 37-254 (307)
114 3u3w_A Transcriptional activat 99.1 1E-07 3.6E-12 72.6 23.6 208 32-248 33-265 (293)
115 3u3w_A Transcriptional activat 99.1 3.4E-08 1.2E-12 75.3 20.9 165 49-213 79-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.9E-08 9.9E-13 71.8 19.1 129 47-180 8-151 (213)
117 1a17_A Serine/threonine protei 99.1 1.7E-08 5.7E-13 69.8 16.2 96 12-109 15-110 (166)
118 4gco_A Protein STI-1; structur 99.1 1.7E-08 5.7E-13 66.8 14.9 97 11-109 14-110 (126)
119 2c2l_A CHIP, carboxy terminus 99.1 1.4E-09 4.8E-14 82.6 10.9 99 9-109 3-101 (281)
120 1na0_A Designed protein CTPR3; 99.1 2.4E-08 8.1E-13 65.3 15.4 99 10-110 9-107 (125)
121 2vyi_A SGTA protein; chaperone 99.0 1.5E-08 5.3E-13 66.8 14.5 120 9-131 11-130 (131)
122 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.5E-12 70.9 22.4 207 9-220 66-292 (306)
123 2c2l_A CHIP, carboxy terminus 99.0 6.2E-09 2.1E-13 79.0 13.9 194 44-249 3-199 (281)
124 4e6h_A MRNA 3'-END-processing 99.0 5.5E-08 1.9E-12 82.2 20.4 214 9-226 342-580 (679)
125 2lni_A Stress-induced-phosphop 99.0 2.2E-08 7.4E-13 66.4 14.7 118 7-127 13-130 (133)
126 3q7a_A Farnesyltransferase alp 99.0 3.1E-07 1.1E-11 70.9 22.8 241 12-260 56-339 (349)
127 1a17_A Serine/threonine protei 99.0 4.3E-08 1.5E-12 67.7 16.4 12 233-244 130-141 (166)
128 2qfc_A PLCR protein; TPR, HTH, 99.0 8.3E-08 2.8E-12 73.2 18.8 169 45-213 75-265 (293)
129 2e2e_A Formate-dependent nitri 99.0 2.1E-08 7.3E-13 70.4 14.4 119 57-178 22-143 (177)
130 2qfc_A PLCR protein; TPR, HTH, 99.0 5.3E-07 1.8E-11 68.7 23.2 168 80-247 75-264 (293)
131 4gco_A Protein STI-1; structur 99.0 4.8E-08 1.6E-12 64.5 14.7 95 47-143 15-109 (126)
132 2e2e_A Formate-dependent nitri 99.0 1.4E-08 4.8E-13 71.3 12.7 122 21-145 21-145 (177)
133 1na0_A Designed protein CTPR3; 99.0 7E-08 2.4E-12 63.0 15.2 93 47-141 11-103 (125)
134 3gw4_A Uncharacterized protein 99.0 1.5E-08 5.2E-13 72.6 12.9 155 21-176 3-173 (203)
135 4f3v_A ESX-1 secretion system 99.0 8E-08 2.7E-12 71.9 16.8 187 22-214 18-237 (282)
136 3gyz_A Chaperone protein IPGC; 99.0 1.6E-08 5.3E-13 69.1 11.8 126 9-144 8-133 (151)
137 3gw4_A Uncharacterized protein 99.0 2.4E-08 8.3E-13 71.5 13.6 157 56-213 3-175 (203)
138 2lni_A Stress-induced-phosphop 98.9 7.3E-08 2.5E-12 63.8 14.8 93 47-141 18-110 (133)
139 1p5q_A FKBP52, FK506-binding p 98.9 5.5E-08 1.9E-12 75.7 15.9 132 44-177 146-292 (336)
140 2vyi_A SGTA protein; chaperone 98.9 8.9E-08 3.1E-12 63.1 14.5 60 48-108 15-74 (131)
141 4f3v_A ESX-1 secretion system 98.9 3.2E-07 1.1E-11 68.7 18.7 197 57-263 18-247 (282)
142 1p5q_A FKBP52, FK506-binding p 98.9 1E-07 3.5E-12 74.2 16.4 153 58-213 126-293 (336)
143 3gyz_A Chaperone protein IPGC; 98.9 1.1E-07 3.8E-12 64.8 14.5 99 80-180 36-134 (151)
144 2vgx_A Chaperone SYCD; alterna 98.9 2.3E-08 7.9E-13 68.1 10.6 97 45-143 21-117 (148)
145 1elw_A TPR1-domain of HOP; HOP 98.9 2.5E-07 8.6E-12 59.6 15.1 99 9-109 3-101 (118)
146 3upv_A Heat shock protein STI1 98.9 1.4E-07 4.6E-12 62.2 13.9 98 10-109 4-101 (126)
147 2vgx_A Chaperone SYCD; alterna 98.9 2.2E-08 7.7E-13 68.2 9.9 93 119-213 25-117 (148)
148 4b4t_Q 26S proteasome regulato 98.8 9.3E-07 3.2E-11 71.0 20.2 197 17-213 11-244 (434)
149 2fbn_A 70 kDa peptidylprolyl i 98.8 2.8E-08 9.5E-13 71.2 9.9 97 151-249 89-186 (198)
150 2xcb_A PCRH, regulatory protei 98.8 8.5E-08 2.9E-12 64.7 11.8 96 12-109 20-115 (142)
151 4gcn_A Protein STI-1; structur 98.8 2.2E-07 7.5E-12 61.4 13.4 98 11-109 9-112 (127)
152 3upv_A Heat shock protein STI1 98.8 3.8E-07 1.3E-11 60.0 14.2 98 45-144 4-101 (126)
153 3dss_A Geranylgeranyl transfer 98.8 1.9E-05 6.7E-10 60.7 26.8 238 11-260 27-311 (331)
154 1elw_A TPR1-domain of HOP; HOP 98.8 8.4E-07 2.9E-11 57.1 15.6 98 45-144 4-101 (118)
155 3sz7_A HSC70 cochaperone (SGT) 98.8 3.3E-07 1.1E-11 63.4 14.2 100 8-109 9-108 (164)
156 2xcb_A PCRH, regulatory protei 98.8 1E-07 3.4E-12 64.3 11.2 99 44-144 17-115 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.8 3.6E-07 1.2E-11 65.3 14.6 161 16-179 10-186 (198)
158 2kck_A TPR repeat; tetratricop 98.8 1.2E-07 4.1E-12 60.6 10.7 97 47-144 8-106 (112)
159 2dba_A Smooth muscle cell asso 98.8 9.8E-07 3.4E-11 59.4 15.8 99 9-110 27-129 (148)
160 1elr_A TPR2A-domain of HOP; HO 98.8 1.9E-07 6.5E-12 61.5 11.8 109 10-121 4-118 (131)
161 3q49_B STIP1 homology and U bo 98.8 4.6E-07 1.6E-11 60.4 13.8 98 9-108 8-105 (137)
162 3q49_B STIP1 homology and U bo 98.7 2.2E-06 7.6E-11 57.0 16.1 100 43-144 7-106 (137)
163 1elr_A TPR2A-domain of HOP; HO 98.7 6.5E-07 2.2E-11 58.8 13.2 94 120-214 9-108 (131)
164 4gcn_A Protein STI-1; structur 98.7 6.7E-07 2.3E-11 59.0 13.0 97 46-143 9-111 (127)
165 3q7a_A Farnesyltransferase alp 98.7 1.4E-05 4.9E-10 61.8 22.0 206 9-219 87-335 (349)
166 4b4t_Q 26S proteasome regulato 98.7 3.8E-06 1.3E-10 67.5 19.7 198 51-248 10-244 (434)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 1.3E-06 4.5E-11 60.3 14.8 95 118-214 14-108 (164)
168 2kck_A TPR repeat; tetratricop 98.7 4.5E-07 1.5E-11 57.9 11.5 97 81-179 7-106 (112)
169 1hxi_A PEX5, peroxisome target 98.7 3E-07 1E-11 60.1 10.4 91 16-108 23-113 (121)
170 2dba_A Smooth muscle cell asso 98.7 2.2E-06 7.5E-11 57.7 15.0 98 44-144 27-128 (148)
171 3ro3_A PINS homolog, G-protein 98.6 3.8E-07 1.3E-11 62.4 10.4 97 11-107 10-116 (164)
172 1hxi_A PEX5, peroxisome target 98.6 2.1E-06 7.2E-11 56.1 13.3 97 152-250 19-115 (121)
173 2xev_A YBGF; tetratricopeptide 98.6 5.3E-06 1.8E-10 54.5 14.8 94 14-109 6-105 (129)
174 3ro3_A PINS homolog, G-protein 98.6 9.8E-07 3.3E-11 60.3 11.6 130 83-212 12-156 (164)
175 1wao_1 Serine/threonine protei 98.6 3E-07 1E-11 75.1 10.3 125 12-139 8-134 (477)
176 3dss_A Geranylgeranyl transfer 98.6 9.3E-05 3.2E-09 56.9 22.7 191 55-250 39-268 (331)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.5E-06 1.2E-10 68.4 15.8 122 47-170 270-405 (457)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.7E-06 5.7E-11 70.3 13.8 130 10-141 268-412 (457)
179 2xev_A YBGF; tetratricopeptide 98.5 9.6E-06 3.3E-10 53.2 14.7 94 49-144 6-105 (129)
180 3k9i_A BH0479 protein; putativ 98.5 5.7E-07 2E-11 58.3 8.0 86 23-109 3-90 (117)
181 1ihg_A Cyclophilin 40; ppiase 98.5 2.5E-06 8.4E-11 67.3 12.9 89 80-170 273-361 (370)
182 1dce_A Protein (RAB geranylger 98.5 3.1E-05 1.1E-09 64.5 19.6 175 24-203 43-244 (567)
183 1wao_1 Serine/threonine protei 98.5 8.1E-07 2.8E-11 72.5 10.0 122 51-175 12-135 (477)
184 3rkv_A Putative peptidylprolyl 98.5 5.1E-06 1.7E-10 57.1 12.7 99 10-109 11-126 (162)
185 3k9i_A BH0479 protein; putativ 98.5 7.7E-07 2.6E-11 57.7 7.8 87 57-144 2-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.4 5.1E-06 1.7E-10 65.5 13.5 138 81-241 224-362 (370)
187 2uy1_A Cleavage stimulation fa 98.4 0.00023 7.8E-09 58.3 23.3 205 26-248 195-412 (493)
188 3rkv_A Putative peptidylprolyl 98.4 1.1E-05 3.6E-10 55.5 13.3 69 150-221 63-131 (162)
189 3n71_A Histone lysine methyltr 98.4 5.2E-06 1.8E-10 67.6 12.8 127 124-250 318-465 (490)
190 1klx_A Cysteine rich protein B 98.4 3E-05 1E-09 51.8 13.8 111 24-145 9-127 (138)
191 2if4_A ATFKBP42; FKBP-like, al 98.3 3.8E-06 1.3E-10 65.4 10.5 96 117-214 232-328 (338)
192 2hr2_A Hypothetical protein; a 98.3 1.8E-05 6.1E-10 53.7 12.2 99 10-108 11-130 (159)
193 3n71_A Histone lysine methyltr 98.3 6.2E-06 2.1E-10 67.2 11.8 124 55-178 319-463 (490)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 2.8E-06 9.7E-11 66.1 9.2 148 81-250 180-329 (338)
195 2hr2_A Hypothetical protein; a 98.3 2.5E-05 8.6E-10 53.0 12.1 96 46-142 12-129 (159)
196 2uy1_A Cleavage stimulation fa 98.2 0.00029 1E-08 57.7 19.8 189 8-213 211-412 (493)
197 1dce_A Protein (RAB geranylger 98.2 0.00021 7E-09 59.6 18.7 171 60-235 44-241 (567)
198 2l6j_A TPR repeat-containing p 98.2 1.7E-06 5.7E-11 55.2 4.8 65 9-74 3-67 (111)
199 1klx_A Cysteine rich protein B 98.2 0.00011 3.8E-09 49.0 13.4 110 60-180 10-127 (138)
200 2kat_A Uncharacterized protein 98.1 7.4E-05 2.5E-09 47.9 11.8 80 133-214 3-82 (115)
201 1na3_A Designed protein CTPR2; 98.1 6.9E-05 2.4E-09 45.5 10.6 62 47-109 11-72 (91)
202 1na3_A Designed protein CTPR2; 98.1 7.9E-05 2.7E-09 45.2 10.8 80 10-91 9-88 (91)
203 2l6j_A TPR repeat-containing p 98.1 3.2E-05 1.1E-09 49.0 9.3 93 44-138 3-101 (111)
204 2kat_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 48.5 10.5 80 28-109 3-82 (115)
205 1zu2_A Mitochondrial import re 98.0 3.2E-05 1.1E-09 52.4 8.5 97 21-121 13-130 (158)
206 1zu2_A Mitochondrial import re 97.9 0.00013 4.4E-09 49.4 10.0 86 127-214 14-120 (158)
207 3ma5_A Tetratricopeptide repea 97.8 0.00015 5E-09 45.3 8.5 62 45-107 7-68 (100)
208 3ma5_A Tetratricopeptide repea 97.8 0.00025 8.7E-09 44.2 9.0 64 79-143 6-69 (100)
209 3ly7_A Transcriptional activat 97.7 0.002 6.9E-08 50.0 14.6 141 42-188 191-346 (372)
210 3ly7_A Transcriptional activat 97.7 0.003 1E-07 49.0 15.4 49 76-125 190-243 (372)
211 3qwp_A SET and MYND domain-con 97.6 0.00042 1.4E-08 55.6 10.2 88 54-141 296-397 (429)
212 3qww_A SET and MYND domain-con 97.6 0.0003 1E-08 56.5 9.0 62 46-107 341-409 (433)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00031 1.1E-08 43.4 6.0 55 19-74 9-64 (99)
214 3qww_A SET and MYND domain-con 97.5 0.0008 2.7E-08 54.0 9.6 61 186-246 341-408 (433)
215 3qwp_A SET and MYND domain-con 97.5 0.001 3.5E-08 53.4 10.2 90 123-212 295-398 (429)
216 2kc7_A BFR218_protein; tetratr 97.4 0.001 3.5E-08 41.0 8.2 57 157-214 7-64 (99)
217 3mkq_A Coatomer beta'-subunit; 97.4 0.0062 2.1E-07 53.0 14.9 155 18-211 607-762 (814)
218 3mkq_A Coatomer beta'-subunit; 97.3 0.017 5.7E-07 50.3 16.3 104 13-143 632-735 (814)
219 1pc2_A Mitochondria fission pr 97.2 0.014 4.7E-07 39.2 11.6 86 132-221 15-105 (152)
220 3bee_A Putative YFRE protein; 97.2 0.01 3.6E-07 36.2 10.4 66 148-214 4-72 (93)
221 2v5f_A Prolyl 4-hydroxylase su 97.2 0.01 3.6E-07 37.0 10.6 66 44-109 4-75 (104)
222 3bee_A Putative YFRE protein; 97.1 0.012 4.1E-07 35.9 10.4 65 114-179 5-72 (93)
223 1pc2_A Mitochondria fission pr 97.1 0.012 4.2E-07 39.4 10.5 83 25-109 13-100 (152)
224 3mkq_B Coatomer subunit alpha; 97.1 0.037 1.2E-06 38.1 13.0 26 80-105 34-59 (177)
225 3mkq_B Coatomer subunit alpha; 96.9 0.054 1.8E-06 37.3 13.4 130 17-176 12-141 (177)
226 3u64_A Protein TP_0956; tetrat 96.8 0.059 2E-06 40.4 13.2 91 62-154 180-281 (301)
227 1wy6_A Hypothetical protein ST 96.8 0.052 1.8E-06 35.4 15.3 139 57-217 19-157 (172)
228 4h7y_A Dual specificity protei 96.7 0.062 2.1E-06 35.7 12.2 102 9-112 12-126 (161)
229 4h7y_A Dual specificity protei 96.5 0.088 3E-06 35.0 11.0 100 44-145 12-124 (161)
230 4gns_B Protein CSD3, chitin bi 96.4 0.033 1.1E-06 47.7 10.9 128 14-142 252-398 (754)
231 3u64_A Protein TP_0956; tetrat 96.3 0.081 2.8E-06 39.6 10.9 91 132-224 180-281 (301)
232 2ff4_A Probable regulatory pro 96.2 0.28 9.7E-06 38.7 14.4 130 7-154 109-249 (388)
233 2v5f_A Prolyl 4-hydroxylase su 96.1 0.12 4E-06 32.1 12.0 61 154-214 9-75 (104)
234 1nzn_A CGI-135 protein, fissio 96.0 0.16 5.3E-06 32.8 10.5 66 148-214 33-103 (126)
235 1wy6_A Hypothetical protein ST 95.7 0.24 8.3E-06 32.4 14.8 150 11-182 6-157 (172)
236 4fhn_B Nucleoporin NUP120; pro 95.6 1.1 3.8E-05 40.9 17.3 130 117-248 901-1049(1139)
237 2ff4_A Probable regulatory pro 95.5 0.1 3.5E-06 41.2 9.4 74 47-121 173-251 (388)
238 1nzn_A CGI-135 protein, fissio 95.4 0.29 9.8E-06 31.6 10.6 91 158-250 9-104 (126)
239 4gns_B Protein CSD3, chitin bi 95.0 0.42 1.4E-05 41.1 11.9 53 192-246 344-397 (754)
240 4b4t_P 26S proteasome regulato 94.9 1.2 4.1E-05 35.9 16.6 189 23-213 29-246 (445)
241 1v54_E Cytochrome C oxidase po 93.8 0.67 2.3E-05 28.4 9.2 48 26-73 26-73 (109)
242 1v54_E Cytochrome C oxidase po 93.2 0.84 2.9E-05 28.0 9.5 46 133-178 28-73 (109)
243 3ffl_A Anaphase-promoting comp 92.5 1.6 5.4E-05 29.6 8.9 69 4-72 12-90 (167)
244 1zbp_A Hypothetical protein VP 92.5 0.39 1.3E-05 35.4 6.4 56 158-214 5-60 (273)
245 2y69_E Cytochrome C oxidase su 92.4 1.4 4.9E-05 28.6 9.2 77 47-124 53-131 (152)
246 4b4t_R RPN7, 26S proteasome re 92.2 2.8 9.7E-05 33.5 11.7 99 81-179 132-237 (429)
247 2y69_E Cytochrome C oxidase su 91.9 1.7 5.8E-05 28.3 9.5 42 136-177 74-115 (152)
248 4b4t_R RPN7, 26S proteasome re 91.3 3.8 0.00013 32.8 11.6 61 47-107 133-195 (429)
249 4fhn_B Nucleoporin NUP120; pro 90.8 9.6 0.00033 34.9 17.9 189 14-209 816-1044(1139)
250 3o48_A Mitochondria fission 1 90.7 2.3 7.9E-05 27.6 9.7 66 78-143 38-106 (134)
251 4b4t_P 26S proteasome regulato 90.2 6.2 0.00021 31.7 20.1 238 5-245 51-320 (445)
252 3esl_A Checkpoint serine/threo 90.1 3.6 0.00012 28.9 10.0 74 147-220 74-150 (202)
253 2uwj_G Type III export protein 90.0 2.1 7.3E-05 26.1 7.7 77 130-214 21-97 (115)
254 2p58_C Putative type III secre 89.8 2.3 7.7E-05 26.1 8.3 49 159-213 49-97 (116)
255 3lvg_A Clathrin heavy chain 1; 89.7 0.00015 5E-09 58.0 -14.6 82 11-100 55-136 (624)
256 1wdy_A 2-5A-dependent ribonucl 89.2 1.8 6E-05 31.9 7.7 208 15-244 7-240 (285)
257 2uwj_G Type III export protein 88.9 2.7 9.2E-05 25.7 7.7 88 164-262 20-107 (115)
258 3txn_A 26S proteasome regulato 88.6 7.7 0.00026 30.6 14.5 164 11-176 20-207 (394)
259 2p58_C Putative type III secre 88.5 2.9 9.9E-05 25.6 8.8 88 164-262 21-108 (116)
260 1k1a_A B-cell lymphoma 3-encod 87.3 4.2 0.00014 29.0 8.5 26 17-42 13-38 (241)
261 3o48_A Mitochondria fission 1 86.0 5.3 0.00018 26.0 12.8 79 146-226 36-117 (134)
262 1y8m_A FIS1; mitochondria, unk 85.8 5.7 0.0002 26.2 13.8 76 147-224 36-114 (144)
263 1y8m_A FIS1; mitochondria, unk 85.2 6.2 0.00021 26.0 11.5 21 123-143 85-105 (144)
264 3ffl_A Anaphase-promoting comp 85.2 6.9 0.00024 26.5 9.4 122 45-179 20-151 (167)
265 3txn_A 26S proteasome regulato 85.0 13 0.00043 29.4 19.4 58 50-107 104-166 (394)
266 3lvg_A Clathrin heavy chain 1; 84.4 0.014 4.7E-07 47.1 -6.3 87 9-104 82-168 (624)
267 4a1g_A Mitotic checkpoint seri 82.9 8.3 0.00028 25.7 9.3 51 169-219 84-135 (152)
268 2d2s_A Exocyst complex compone 81.7 13 0.00043 27.0 9.2 88 16-106 24-117 (235)
269 3lpz_A GET4 (YOR164C homolog); 81.4 16 0.00056 28.0 19.1 112 47-173 37-159 (336)
270 1k1a_A B-cell lymphoma 3-encod 80.8 11 0.00038 26.7 8.4 180 51-243 12-203 (241)
271 1zbp_A Hypothetical protein VP 80.2 16 0.00054 27.1 10.9 118 122-250 4-130 (273)
272 4ady_A RPN2, 26S proteasome re 79.7 34 0.0012 30.6 17.7 226 15-247 416-656 (963)
273 4b4t_S RPN3, 26S proteasome re 79.3 25 0.00086 28.9 12.5 65 45-109 231-299 (523)
274 3eiq_C Programmed cell death p 78.0 22 0.00076 27.6 16.8 82 152-234 219-302 (358)
275 3jxi_A Vanilloid receptor-rela 77.7 1.6 5.4E-05 31.8 3.0 55 17-71 9-72 (260)
276 2zu6_B Programmed cell death p 76.8 22 0.00075 26.9 14.0 80 153-233 169-250 (307)
277 2ion_A PDCD4, programmed cell 74.9 16 0.00054 24.4 8.1 65 12-77 11-77 (152)
278 3ljn_A Hypothetical protein; a 73.7 16 0.00056 28.0 8.0 216 9-245 17-266 (364)
279 3eyy_A Putative iron uptake re 73.1 17 0.00058 23.9 6.9 58 105-164 9-66 (145)
280 2xig_A Ferric uptake regulatio 72.3 18 0.00063 23.9 8.5 59 36-95 18-76 (150)
281 3hra_A Ankyrin repeat family p 72.1 11 0.00037 25.9 6.0 17 205-221 158-174 (201)
282 3aji_A 26S proteasome non-ATPa 72.0 18 0.00063 25.4 7.4 181 17-220 10-200 (231)
283 3eu9_A Huntingtin-interacting 71.9 21 0.0007 25.1 7.7 206 18-248 14-235 (240)
284 3jxi_A Vanilloid receptor-rela 71.0 4.5 0.00015 29.4 4.0 189 52-248 9-250 (260)
285 1mzb_A Ferric uptake regulatio 70.7 19 0.00064 23.3 7.1 59 36-95 9-68 (136)
286 3eyy_A Putative iron uptake re 70.4 19 0.00067 23.6 6.6 59 35-95 9-67 (145)
287 3kea_A K1L; tropism, ANK repea 70.4 15 0.00051 27.2 6.8 20 156-175 164-183 (285)
288 2fe3_A Peroxide operon regulat 70.3 20 0.00068 23.5 8.2 59 105-164 12-70 (145)
289 2wpv_A GET4, UPF0363 protein Y 70.3 33 0.0011 26.1 20.5 112 47-173 35-157 (312)
290 3esl_A Checkpoint serine/threo 70.1 26 0.00088 24.7 9.5 57 198-256 92-149 (202)
291 1mzb_A Ferric uptake regulatio 69.9 19 0.00067 23.2 7.4 58 106-164 9-67 (136)
292 2xig_A Ferric uptake regulatio 69.6 21 0.00073 23.6 7.9 58 106-164 18-75 (150)
293 2w57_A Ferric uptake regulatio 69.3 22 0.00074 23.5 7.0 59 36-95 8-67 (150)
294 2w57_A Ferric uptake regulatio 69.2 22 0.00074 23.5 7.5 59 105-164 7-66 (150)
295 2wvi_A Mitotic checkpoint seri 69.0 24 0.00081 23.9 7.0 72 77-151 60-132 (164)
296 2fe3_A Peroxide operon regulat 68.9 22 0.00074 23.3 7.9 59 36-95 13-71 (145)
297 2b7e_A PRE-mRNA processing pro 68.9 3.5 0.00012 22.4 2.1 29 27-55 3-31 (59)
298 3eu9_A Huntingtin-interacting 68.2 9.7 0.00033 26.9 5.2 42 55-100 16-59 (240)
299 1qsa_A Protein (soluble lytic 67.9 55 0.0019 27.7 20.7 115 130-248 229-347 (618)
300 1bpo_A Protein (clathrin); cla 65.3 54 0.0018 26.6 9.8 142 23-177 342-483 (494)
301 2d2s_A Exocyst complex compone 65.2 36 0.0012 24.6 12.0 89 86-177 24-118 (235)
302 4ets_A Ferric uptake regulatio 65.0 29 0.00098 23.3 7.5 58 106-164 24-83 (162)
303 4aez_C MAD3, mitotic spindle c 64.7 36 0.0012 24.4 8.6 53 167-219 131-184 (223)
304 3lpz_A GET4 (YOR164C homolog); 64.6 46 0.0016 25.6 21.1 140 55-213 65-215 (336)
305 3hra_A Ankyrin repeat family p 64.0 20 0.0007 24.4 6.1 81 18-103 10-92 (201)
306 3kea_A K1L; tropism, ANK repea 63.8 29 0.00098 25.6 7.2 145 52-213 35-186 (285)
307 1ug3_A EIF4GI, eukaryotic prot 63.6 46 0.0016 25.6 8.3 66 12-78 13-79 (339)
308 4ets_A Ferric uptake regulatio 63.6 31 0.001 23.2 7.0 58 37-95 25-84 (162)
309 3mwm_A ZUR, putative metal upt 62.8 17 0.00059 23.7 5.1 44 51-94 19-62 (139)
310 3d5l_A Regulatory protein RECX 62.3 40 0.0014 24.1 11.7 14 99-112 95-108 (221)
311 2etb_A Transient receptor pote 62.0 14 0.00046 26.7 5.0 19 227-245 225-243 (256)
312 3mwm_A ZUR, putative metal upt 61.2 18 0.00061 23.6 5.0 46 119-164 17-62 (139)
313 2ijq_A Hypothetical protein; s 61.0 35 0.0012 23.0 7.9 50 59-108 46-103 (161)
314 1wdy_A 2-5A-dependent ribonucl 60.5 45 0.0015 24.1 8.5 211 16-251 42-277 (285)
315 4b4t_S RPN3, 26S proteasome re 60.1 72 0.0025 26.3 9.8 66 9-74 230-299 (523)
316 2rfa_A Transient receptor pote 59.7 39 0.0013 23.6 7.1 55 191-246 157-220 (232)
317 2ijq_A Hypothetical protein; s 59.4 38 0.0013 22.8 7.6 48 94-141 46-101 (161)
318 2wvi_A Mitotic checkpoint seri 59.2 38 0.0013 22.9 11.5 73 147-222 60-133 (164)
319 2o03_A Probable zinc uptake re 59.1 14 0.00047 23.8 4.1 42 18-59 18-59 (131)
320 3t8k_A Uncharacterized protein 59.1 40 0.0014 23.0 8.5 47 204-250 132-181 (186)
321 4ady_A RPN2, 26S proteasome re 59.0 1E+02 0.0035 27.7 17.0 178 27-213 471-657 (963)
322 2fu4_A Ferric uptake regulatio 58.2 24 0.00082 20.2 7.3 58 36-94 8-66 (83)
323 2o03_A Probable zinc uptake re 58.1 30 0.001 22.2 5.6 43 52-94 17-59 (131)
324 3t8k_A Uncharacterized protein 55.7 46 0.0016 22.7 8.7 28 52-79 42-69 (186)
325 2wpv_A GET4, UPF0363 protein Y 53.8 71 0.0024 24.3 20.6 140 54-212 62-215 (312)
326 3eiq_C Programmed cell death p 53.6 55 0.0019 25.4 7.2 25 13-37 220-244 (358)
327 3bqo_A Telomeric repeat-bindin 52.4 14 0.00049 25.8 3.3 48 166-213 94-145 (211)
328 3bu8_A Telomeric repeat-bindin 52.2 61 0.0021 23.1 8.1 18 195-212 124-141 (235)
329 3l6a_A Eukaryotic translation 51.9 83 0.0028 24.5 8.0 71 82-157 14-90 (364)
330 2fu4_A Ferric uptake regulatio 50.0 34 0.0012 19.5 7.3 33 131-163 33-65 (83)
331 1ug3_A EIF4GI, eukaryotic prot 48.5 90 0.0031 23.9 8.1 64 48-112 14-78 (339)
332 4gq2_M Nucleoporin NUP120; bet 47.4 1.6E+02 0.0054 26.5 11.7 49 116-164 898-950 (950)
333 3qil_A Clathrin heavy chain 1; 45.8 20 0.00068 22.8 2.9 47 16-65 38-84 (125)
334 4a1g_A Mitotic checkpoint seri 45.8 64 0.0022 21.5 10.5 71 77-150 65-136 (152)
335 3b7b_A Euchromatic histone-lys 45.6 26 0.0009 24.6 4.2 207 16-248 14-235 (237)
336 3e3v_A Regulatory protein RECX 45.2 71 0.0024 21.8 10.7 22 190-211 141-163 (177)
337 4fke_A Aminopeptidase N; zinc 44.8 1.7E+02 0.0059 26.1 17.8 167 14-183 690-864 (909)
338 3twr_A Tankyrase-2; ankyrin re 44.7 62 0.0021 21.0 5.8 16 19-34 14-29 (165)
339 3aji_A 26S proteasome non-ATPa 44.6 72 0.0025 22.1 6.4 179 51-252 9-197 (231)
340 2rg8_A Programmed cell death p 43.5 29 0.001 23.4 3.8 27 12-38 12-38 (165)
341 2ko4_A Mediator of RNA polymer 43.2 21 0.00072 20.6 2.5 32 5-36 31-62 (81)
342 2pnn_A Transient receptor pote 42.8 20 0.0007 26.1 3.3 19 227-245 237-255 (273)
343 2yru_A Steroid receptor RNA ac 42.8 62 0.0021 20.4 5.4 42 32-73 48-89 (118)
344 3f3f_C Nucleoporin NUP85; stru 42.3 1.3E+02 0.0043 25.2 7.8 74 94-169 495-568 (570)
345 2zu6_B Programmed cell death p 42.3 1.1E+02 0.0037 23.2 8.5 64 13-77 169-234 (307)
346 3k1s_A PTS system, cellobiose- 41.9 61 0.0021 20.1 8.0 24 226-249 85-108 (109)
347 3pvs_A Replication-associated 41.6 1.4E+02 0.0047 24.0 12.2 32 93-124 268-299 (447)
348 3c1d_A Protein ORAA, regulator 40.6 79 0.0027 21.0 13.9 50 61-112 46-95 (159)
349 2r9g_A AAA ATPase, central reg 40.5 93 0.0032 21.8 10.5 32 58-90 27-58 (204)
350 2pnn_A Transient receptor pote 40.0 38 0.0013 24.6 4.4 56 16-71 16-80 (273)
351 1bd8_A P19INK4D CDK4/6 inhibit 39.8 30 0.001 22.3 3.5 20 16-35 5-24 (156)
352 1bd8_A P19INK4D CDK4/6 inhibit 39.5 29 0.001 22.4 3.4 15 91-105 10-24 (156)
353 1n11_A Ankyrin; clathrin, BAND 39.4 86 0.0029 24.6 6.7 50 15-68 16-67 (437)
354 3lxu_X Tripeptidyl-peptidase 2 38.1 2.6E+02 0.009 26.4 11.7 74 165-240 1264-1337(1354)
355 3dfg_A Xcrecx, regulatory prot 38.1 89 0.003 20.9 13.6 11 189-199 136-146 (162)
356 2rfa_A Transient receptor pote 36.6 1.1E+02 0.0036 21.3 9.2 184 16-213 6-222 (232)
357 4g8k_A 2-5A-dependent ribonucl 35.7 1.4E+02 0.0047 22.4 7.7 99 136-250 220-324 (337)
358 2p22_A Suppressor protein STP2 35.0 35 0.0012 23.3 3.1 49 43-92 109-157 (174)
359 3l6a_A Eukaryotic translation 34.9 1.6E+02 0.0055 22.9 14.0 69 11-80 13-83 (364)
360 2ion_A PDCD4, programmed cell 34.8 99 0.0034 20.5 11.1 66 118-184 12-79 (152)
361 3ygs_P Procaspase 9; apoptosis 34.2 57 0.002 19.6 3.8 14 96-109 53-66 (97)
362 3d9h_A CDNA FLJ77766, highly s 34.1 70 0.0024 23.5 5.1 211 10-243 12-242 (285)
363 2f6m_A Suppressor protein STP2 34.0 62 0.0021 17.9 4.7 43 189-232 6-48 (65)
364 3bge_A Predicted ATPase; struc 34.0 1.2E+02 0.0041 21.2 8.6 34 92-125 19-52 (201)
365 4aez_C MAD3, mitotic spindle c 33.8 1.3E+02 0.0044 21.5 9.3 54 97-150 131-185 (223)
366 2dzn_A Probable 26S proteasome 33.5 46 0.0016 23.1 3.9 18 18-35 7-24 (228)
367 1ixm_A SPO0B, protein (sporula 33.1 1.2E+02 0.0041 21.0 5.9 26 153-178 35-60 (192)
368 3pvs_A Replication-associated 33.0 1.9E+02 0.0065 23.2 15.0 29 78-108 192-220 (447)
369 3bge_A Predicted ATPase; struc 32.6 1.3E+02 0.0044 21.1 8.8 41 51-91 10-53 (201)
370 2nsz_A Programmed cell death p 32.6 98 0.0033 19.7 12.4 23 119-141 11-33 (129)
371 3ljn_A Hypothetical protein; a 32.2 1.5E+02 0.0051 22.5 6.8 152 44-210 17-195 (364)
372 3t5v_B Nuclear mRNA export pro 32.1 1.6E+02 0.0055 23.8 7.0 63 47-109 178-249 (455)
373 2dzn_A Probable 26S proteasome 31.8 87 0.003 21.6 5.1 173 52-243 6-194 (228)
374 3c1d_A Protein ORAA, regulator 31.4 1.2E+02 0.004 20.2 11.9 51 96-148 46-96 (159)
375 3f3f_C Nucleoporin NUP85; stru 31.0 2.4E+02 0.0081 23.7 7.9 74 59-134 495-568 (570)
376 3ctd_A Putative ATPase, AAA fa 30.9 1.4E+02 0.0049 21.1 8.3 34 92-125 47-80 (213)
377 1zl8_A LIN-7; heterodimer, alp 29.9 62 0.0021 16.7 2.7 44 200-245 8-51 (53)
378 1uzc_A Hypothetical protein FL 29.3 59 0.002 18.3 2.9 32 26-58 14-46 (71)
379 2yru_A Steroid receptor RNA ac 28.9 1.1E+02 0.0038 19.3 6.0 19 160-178 71-89 (118)
380 3bu8_A Telomeric repeat-bindin 28.8 1.6E+02 0.0055 21.0 12.1 49 61-109 88-143 (235)
381 2qfz_A TBC1 domain family memb 28.6 1.4E+02 0.0047 22.9 6.0 48 171-218 230-277 (345)
382 3t5v_B Nuclear mRNA export pro 28.4 2E+02 0.0067 23.3 6.9 29 153-181 179-207 (455)
383 2dod_A Transcription elongatio 28.4 72 0.0025 18.6 3.3 34 26-60 16-50 (82)
384 1wgl_A TOLL-interacting protei 28.1 35 0.0012 18.4 1.8 18 198-215 36-53 (59)
385 2p22_A Suppressor protein STP2 27.4 1.3E+02 0.0044 20.6 4.8 46 151-197 112-157 (174)
386 3lxu_X Tripeptidyl-peptidase 2 27.3 3.7E+02 0.013 25.5 9.0 77 132-211 1266-1342(1354)
387 2etb_A Transient receptor pote 27.2 1.7E+02 0.0057 20.7 8.3 57 16-73 5-71 (256)
388 3r88_A Anthranilate phosphorib 27.2 2.3E+02 0.0077 22.2 7.4 67 8-75 21-89 (377)
389 1qsa_A Protein (soluble lytic 27.0 2.9E+02 0.0099 23.4 21.3 88 157-248 222-313 (618)
390 4gq2_M Nucleoporin NUP120; bet 27.0 3.5E+02 0.012 24.4 11.9 107 156-267 816-946 (950)
391 3ctd_A Putative ATPase, AAA fa 25.5 1.8E+02 0.0062 20.6 10.2 66 47-112 34-107 (213)
392 3bqo_A Telomeric repeat-bindin 25.1 1.1E+02 0.0039 21.4 4.3 25 155-179 122-146 (211)
393 4g8k_A 2-5A-dependent ribonucl 25.1 2.1E+02 0.0073 21.3 9.4 50 160-220 280-329 (337)
394 2qfz_A TBC1 domain family memb 24.9 1.8E+02 0.0063 22.2 6.1 112 62-177 189-313 (345)
395 2qq8_A TBC1 domain family memb 24.5 1.4E+02 0.0049 22.7 5.4 111 31-144 214-327 (334)
396 2r9g_A AAA ATPase, central reg 23.4 2E+02 0.0068 20.2 9.1 62 85-147 16-85 (204)
397 1rw2_A ATP-dependent DNA helic 23.1 1.7E+02 0.0058 19.4 4.9 53 200-252 73-126 (152)
398 1oai_A Nuclear RNA export fact 22.9 95 0.0033 16.7 2.9 22 24-45 34-56 (59)
399 2bn5_A PSI; nuclear protein, s 22.8 69 0.0024 14.8 2.5 22 226-247 8-29 (33)
400 2jp7_A MRNA export factor MEX6 22.3 34 0.0012 18.3 1.1 20 25-45 34-53 (57)
401 2keb_A DNA polymerase subunit 22.0 1.4E+02 0.0049 18.1 7.1 31 169-199 28-58 (101)
402 3ph0_C ASCG; type III secretio 20.9 1.1E+02 0.0037 16.4 4.2 7 197-203 52-58 (61)
403 2cwy_A Hypothetical protein TT 20.7 1.5E+02 0.005 17.7 5.8 16 59-74 15-30 (94)
404 2crb_A Nuclear receptor bindin 20.6 1.5E+02 0.0051 17.8 4.6 25 187-211 17-41 (97)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.1e-38 Score=256.81 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------H
Q 048616 27 EKAYKIVEKMRDEDISPDV-ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR---------L 96 (272)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 96 (272)
..+..+.+++.+.+..+++ ..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665544 35788899999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh
Q 048616 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234 (272)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (272)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|...+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999988887654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.2e-38 Score=255.74 Aligned_cols=197 Identities=13% Similarity=0.179 Sum_probs=183.1
Q ss_pred CCCCCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------hhHHHHHHHHH
Q 048616 2 REMGVKPDI-VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ---------PDKARDVLKEM 71 (272)
Q Consensus 2 ~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 71 (272)
++.++.++. ..++.+|++|++.|++++|+++|++|.+.|++||..+|+.||.+|++.+. +++|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 456666554 46899999999999999999999999999999999999999999987765 57899999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHh
Q 048616 72 KEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (272)
.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
||+.+|.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.9e-26 Score=193.72 Aligned_cols=257 Identities=11% Similarity=0.022 Sum_probs=205.2
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..+++.+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 589999999999999999999999999999876533 67788888888888888888888888887653 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
+.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 88888888888888888888876432 67788888888888888888888888887664 44677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc--HHhHHHHHHHHHHhhhHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GHKPS--QVSFRRIKALMELANKQEALQ 240 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~ 240 (272)
++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888887765 446777888888888888888888888888765 56776 667888888888888888888
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHhhcccccCC
Q 048616 241 NLSNKMALFGPSMIPKREEYLAEMSASDSFS 271 (272)
Q Consensus 241 ~~~~~~~~~~~~~~p~~~~~~~ll~ac~~~~ 271 (272)
++++++.+.++ ++..+|..+..++...|
T Consensus 537 ~~~~~~~~~~p---~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 537 DALNQGLLLST---NDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHSS---CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC---CChHHHHHHHHHHHHhC
Confidence 88888877661 35566666666554443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-24 Score=182.96 Aligned_cols=238 Identities=7% Similarity=-0.054 Sum_probs=215.3
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.+..+|+.++.++.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 367789999999999999999999999998754 4478899999999999999999999999998864 34688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
.+|.+.|++++|+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998754 378899999999999999999999999998764 457889999999999999999
Q ss_pred HHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHH
Q 048616 168 IALQLWNDMVEK----GFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQN 241 (272)
Q Consensus 168 ~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (272)
+|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|...|++++|.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999876 55676 7899999999999999999999999998874 3478889999999999999999999
Q ss_pred HHHHHHhcC
Q 048616 242 LSNKMALFG 250 (272)
Q Consensus 242 ~~~~~~~~~ 250 (272)
+++++.+..
T Consensus 572 ~~~~~l~~~ 580 (597)
T 2xpi_A 572 HLHESLAIS 580 (597)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999999876
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.2e-20 Score=150.39 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=148.5
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+.+..+|..+...+.+.|++++|++.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34667778888888888888888888888776532 245567777777777777777777777776653 2234455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC--------------------
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC-------------------- 146 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 146 (272)
...+...|++++|.+.|+++.+..+. +..+|..+...+.+.|++++|...|+++.+.+.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666655322 455566666666666666666666655543320
Q ss_pred -------------CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 147 -------------LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 147 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+.+..++..+..++.+.|++++|...++++.+.+ +.+..+|..+...+.+.|++++|.+.|+++.+
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1234455556666666666666666666666554 33345566666666666666666666666665
Q ss_pred cCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 214 KGHKPSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.. +.+..++..+...+...|++++|...++++.+.
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 52 335555666666666666666666666666543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=1.8e-20 Score=149.33 Aligned_cols=232 Identities=11% Similarity=0.005 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
+..+...+...|++++|.+.|+++.+..+ -+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 34444444455555555555555554322 134555555666666666666666666665543 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
.|++++|...+++.....+. +..++..+...+.+.|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...
T Consensus 216 ~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666655332 57788889999999999999999999998874 34577899999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999875 6677899999999999999999999999998752 3356678889999999999999999999998754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.3e-20 Score=149.30 Aligned_cols=236 Identities=10% Similarity=0.006 Sum_probs=144.6
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 355677777777777788888888887777653 3366777777777777777777777777777664 33566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHH------------HHHHhhcCChhhHHHHHHHHHhCCCCCCHhh
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNA---TTYNLF------------FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
.+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 7777777777777777777765321 22 333333 233566666666666666665542 334555
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh-HHHH-----
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS-FRRI----- 226 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l----- 226 (272)
+..+..++.+.|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+. .|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 5666666666666666666666655543 334455556666666666666666666666543 222222 2222
Q ss_pred -------HHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 227 -------KALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 227 -------~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...+...|++++|...++++.+..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455555666666666666655543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=9.1e-20 Score=147.94 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=116.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA---AAYNA 85 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 85 (272)
+..+|..+..++...|++++|...|+++.+.+.. +...+..+..++.+.|++++|.+.|+++.+.. +.+. ..+..
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 136 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQ 136 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 4556666666666666666666666666654322 45566666666666666666666666665542 1122 33333
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 048616 86 A------------IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSC 153 (272)
Q Consensus 86 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (272)
+ ...+...|++++|...|+++.+.... +..++..+...|.+.|++++|...|+++.+.. +.+..++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3 22255555555555555555544322 44455555555555555555555555554432 2234445
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCc--
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVL------------FDLLCDMGKLVEAEKSFLEMIEKGHKPS-- 219 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-- 219 (272)
..+...+...|++++|...++.+.+.. +.+...+..+ ...+.+.|++++|.++|+++.+. .|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 555555555555555555555554432 1122222222 44444445555555555544443 222
Q ss_pred ---HHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 220 ---QVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 220 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
...+..+...+.+.|++++|...++++.+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333344444444444445444444443
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=171.30 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=126.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRD---EDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
-..+||++|++|++.|++++|.++|++|.+ .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC------HhhHHHHHH
Q 048616 86 AIRNYCIAKRL-RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN------TQSCMFLVK 158 (272)
Q Consensus 86 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 158 (272)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..+..|+ ..+...+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999988765553 444444444 3334443 445556666
Q ss_pred HHHhcC
Q 048616 159 LCKRQE 164 (272)
Q Consensus 159 ~~~~~~ 164 (272)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 676554
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=5.5e-20 Score=145.33 Aligned_cols=238 Identities=11% Similarity=-0.075 Sum_probs=196.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+...+.+.|++++|++.|+++.+..+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456688899999999999999999999988653 378899999999999999999999999999874 446889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC---------CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC-CCHhhHHHHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSP---------NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL-PNTQSCMFLVK 158 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 158 (272)
+|...|++++|...|+++.+..... ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999998763210 1222334578899999999999999999876422 15788999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
.+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 5567889999999999999999999999998873 2246778889999999999999
Q ss_pred HHHHHHHHHhcC
Q 048616 239 LQNLSNKMALFG 250 (272)
Q Consensus 239 a~~~~~~~~~~~ 250 (272)
|...+++..+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.5e-19 Score=136.57 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=114.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
++..+...|++++|..+++++.+... .+...+..+...+...| ++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcc
Confidence 33444444444444444444443321 13344444444445555 4555555555554432 223444555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 048616 95 RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWN 174 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (272)
++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 140 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp CHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 555555555555544322 23344445555555555555555555555442 2344555555556666666666666665
Q ss_pred HHHHcC--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 175 DMVEKG--------FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 175 ~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+..+.. .+.+..++..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...+++.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 554421 022234555566666666666666666666655421 23444555666666666666666666655
Q ss_pred Hh
Q 048616 247 AL 248 (272)
Q Consensus 247 ~~ 248 (272)
.+
T Consensus 297 l~ 298 (330)
T 3hym_B 297 LG 298 (330)
T ss_dssp TT
T ss_pred Hc
Confidence 43
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=5.5e-19 Score=139.59 Aligned_cols=237 Identities=10% Similarity=-0.052 Sum_probs=200.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788899999999999999999999998753 378889999999999999999999999999875 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH---------------HHHHHhhcCChhhHHHHHHHHHhCCCCC-CHhh
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNL---------------FFRVFYWSNDLRSSWNLYCRMMGTGCLP-NTQS 152 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 152 (272)
.+...|++++|.+.++++...... +...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999987543 2222221 2344448999999999999997763221 5788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 4567789999999999999999999999998863 3356677889999999
Q ss_pred hhhHHHHHHHHHHHHhcC
Q 048616 233 ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~ 250 (272)
.|++++|...+++..+..
T Consensus 298 ~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999998765
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=164.41 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=100.7
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHHHHHh---CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048616 115 ATTYNLFFRVFYWSNDLRSSWNLYCRMMG---TGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVL 191 (272)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (272)
..||+++|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788899999999999999988877753 478889999999999999999999999999999888888999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh
Q 048616 192 FDLLCDMGKL-VEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN 234 (272)
Q Consensus 192 i~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (272)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9988888874 678889999988899999988888776555443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.9e-18 Score=134.24 Aligned_cols=241 Identities=10% Similarity=0.073 Sum_probs=206.2
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
+.+.+...+..+...+...|++++|.++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 45667788889999999999999999999999886533 66677888899999999999999999999864 44678899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 85 AAIRNYCIAK-RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 85 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
.+...+...| ++++|.+.|++..+.... +...|..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 999999999999987543 57788999999999999999999999998764 33456777788999999
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCcHHhHHHHHHHHHHhhh
Q 048616 164 EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG--------HKPSQVSFRRIKALMELANK 235 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~ 235 (272)
|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. .+.+...+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998875 5567888999999999999999999999998752 13345678889999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 048616 236 QEALQNLSNKMALFG 250 (272)
Q Consensus 236 ~~~a~~~~~~~~~~~ 250 (272)
+++|...+++..+..
T Consensus 252 ~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 252 YAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998876
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=2.2e-18 Score=133.78 Aligned_cols=236 Identities=10% Similarity=-0.080 Sum_probs=198.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+...+...|++++|..+|+++.+.... +...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4566778888999999999999999999886533 77889999999999999999999999999874 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH--------------HH-HHhhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF--------------FR-VFYWSNDLRSSWNLYCRMMGTGCLPNTQSC 153 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (272)
.+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999999987433 33333333 22 3778899999999999998764 4467889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHh
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELA 233 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (272)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998875 4567788999999999999999999999998863 23567788899999999
Q ss_pred hhHHHHHHHHHHHHhcC
Q 048616 234 NKQEALQNLSNKMALFG 250 (272)
Q Consensus 234 ~~~~~a~~~~~~~~~~~ 250 (272)
|++++|...+++..+..
T Consensus 254 g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 99999999999998766
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-17 Score=125.51 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=202.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PD----AAA 82 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 82 (272)
.+..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999998876 68889999999999999999999999999875311 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (272)
+..+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8999999999999999999999999874 443 34666788999999999998763 3456778888899999
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHH
Q 048616 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL 242 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (272)
.|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+.++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998876 4567888999999999999999999999998873 33567778899999999999999999
Q ss_pred HHHHHhcCC--CCCCCHHHHHHhhcc
Q 048616 243 SNKMALFGP--SMIPKREEYLAEMSA 266 (272)
Q Consensus 243 ~~~~~~~~~--~~~p~~~~~~~ll~a 266 (272)
+++..+... ...|+.......+.-
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999876430 122666555555443
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2e-18 Score=136.36 Aligned_cols=233 Identities=12% Similarity=0.078 Sum_probs=190.4
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD-------- 79 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 79 (272)
.+..+|..+...|.+.|++++|++.|+++.+... .+..++..+..++...|++++|...++++.+.. |+
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 173 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK 173 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhh
Confidence 4678999999999999999999999999988643 368899999999999999999999999998753 22
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 80 ---AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 80 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
...+..+...+...|++++|.+.++++.+.... ++..++..+...+...|++++|...+++..+.. +.+..++..
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 252 (365)
T 4eqf_A 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNR 252 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 223344578899999999999999999987543 157889999999999999999999999998764 456789999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CcHHhHH
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK-----------PSQVSFR 224 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~ 224 (272)
+..++...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.|+++.+.... .+...|.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 9999999999999999999998875 445788899999999999999999999998765211 1256788
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 048616 225 RIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~ 245 (272)
.+..++...|+.+.+..+.++
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 899999999999888877665
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=2.1e-17 Score=126.38 Aligned_cols=232 Identities=12% Similarity=0.075 Sum_probs=188.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP-DAAAYNAAIRN 89 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 89 (272)
.....+..+|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 3556678899999999999986654 2 35677888999999999999999999999998876545 56667777899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhH---HHHHHHHHhcCcH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSC---MFLVKLCKRQEKV 166 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 166 (272)
+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++++.+.. |+.... ..++..+...|++
T Consensus 111 ~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence 9999999999999987 3578889999999999999999999999998764 443211 2233444556999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHH-HHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEA-LQNLSNK 245 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~ 245 (272)
++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..+... -+..++..++..+...|+.++ +.+++++
T Consensus 183 ~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 183 QDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999874 66788999999999999999999999999988732 266677788888888888765 6789999
Q ss_pred HHhcCCCCCCCHHHH
Q 048616 246 MALFGPSMIPKREEY 260 (272)
Q Consensus 246 ~~~~~~~~~p~~~~~ 260 (272)
+.+.. |+....
T Consensus 261 ~~~~~----P~~~~~ 271 (291)
T 3mkr_A 261 LKDAH----RSHPFI 271 (291)
T ss_dssp HHHHC----TTCHHH
T ss_pred HHHhC----CCChHH
Confidence 98876 665443
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5.8e-17 Score=127.20 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=175.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
|+..+..+...+...|++++|+..|+++.+..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456777788888888888888888888877643 367778888888888888888888888888763 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHH------------HHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLS--PNATTYNLF------------FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCM 154 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (272)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 888888888888888888876320 133334333 467778888888888888887653 44667777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH----------
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR---------- 224 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~---------- 224 (272)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 78888888888888888888887764 456677778888888888888888888888765322 222222
Q ss_pred --HHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 225 --RIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 225 --~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+...+...|++++|...+++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12556777888888888888887765
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.1e-17 Score=126.08 Aligned_cols=235 Identities=12% Similarity=0.023 Sum_probs=112.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH-
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY--PDAAAYNAA- 86 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l- 86 (272)
..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+.... .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 445555555555555555555555555543221 3445555555555555555555555555543210 122222222
Q ss_pred -----------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 87 -----------IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 87 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
...+...|++++|.+.++++.+.... +...+..+...+...|++++|...+++..+.. +.+..++..
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 193 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYK 193 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 24444455555555555555444321 34444444444555555555555555444432 223344444
Q ss_pred HHHHHH----------------------------------------------hcCcHHHHHHHHHHHHHcCCCccH----
Q 048616 156 LVKLCK----------------------------------------------RQEKVEIALQLWNDMVEKGFGSYI---- 185 (272)
Q Consensus 156 l~~~~~----------------------------------------------~~~~~~~a~~~~~~~~~~~~~~~~---- 185 (272)
+...+. +.|++++|...++...+.... +.
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 272 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTV 272 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHH
Confidence 444444 455555555555554443211 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 112334455555555555655555555541 113444445555555566666666666655543
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=5.4e-18 Score=124.20 Aligned_cols=199 Identities=12% Similarity=-0.022 Sum_probs=133.9
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+++...+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 566677777888888888888888888888776433 67777778888888888888888888887764 3356677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 87 IRNYCIA-----------KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 87 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
..++... |++++|+..|++..+..+. +...+..+...+...|++++|...|++..+.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 7777777777777776433 56667777777777777777777777776665 56666777
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+..++...|++++|...++...+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777777776654 344566666777777777777777776654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=5.3e-18 Score=133.93 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=195.1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA-- 85 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 85 (272)
.+..+|..+...+...|++++|.+.|+++.+.+. .+..++..+...+...|++++|.+.++++.+.... +...+..
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 173 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE 173 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4677899999999999999999999999988753 37889999999999999999999999999986422 2222221
Q ss_pred -------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHh
Q 048616 86 -------------AIRNYCIAKRLRDASGLMDEMVEKGLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 86 -------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (272)
.+..+...|++++|...|+++.+..... +..++..+...+.+.|++++|...++++.... +.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 2333448899999999999999875432 57889999999999999999999999987763 44678
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------cHH
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP----------SQV 221 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~ 221 (272)
++..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...|+++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 89999999999999999999999998875 4567888999999999999999999999988752211 157
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 222 SFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
+|..+..++...|+.++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 788899999999999999988775
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.2e-17 Score=129.55 Aligned_cols=235 Identities=12% Similarity=0.048 Sum_probs=195.3
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA- 86 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 86 (272)
.+...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHh
Confidence 367788899999999999999999999998864 33778899999999999999999999999997642 233333333
Q ss_pred -------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh
Q 048616 87 -------------IR-NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 87 -------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
.. .+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 208 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQL 208 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHH
Confidence 22 377889999999999999987543 78889999999999999999999999997764 446788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------cHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-----------SQV 221 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~ 221 (272)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+..... +..
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 9999999999999999999999998875 4567788899999999999999999999998763321 466
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 222 SFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.+..+..++...|+.++|..++++..
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77889999999999999999887643
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.2e-16 Score=120.98 Aligned_cols=249 Identities=8% Similarity=-0.013 Sum_probs=197.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD--AAAYNAA 86 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (272)
|...+......+...|++++|+..|++..+..+. +...+..+..++...|++++|+..+++..+.+..++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3445666778899999999999999999987543 566889999999999999999999999998432222 3348899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (272)
...+...|++++|.+.|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987544 66789999999999999999999999987763 44566677776344455699
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCcH------HhHHHHHHHHHHhhhH
Q 048616 167 EIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK---LVEAEKSFLEMIEKG-HKPSQ------VSFRRIKALMELANKQ 236 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~~~~ 236 (272)
++|...++...+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+. ..|..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998875 4446777778888888888 888999999887652 12332 4666788899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHhhc
Q 048616 237 EALQNLSNKMALFGPSMIPKREEYLAEMS 265 (272)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ 265 (272)
++|...+++..+.. |+.......+.
T Consensus 238 ~~A~~~~~~al~~~----p~~~~a~~~l~ 262 (272)
T 3u4t_A 238 VKADAAWKNILALD----PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHC----TTCHHHHHHHC
T ss_pred HHHHHHHHHHHhcC----ccHHHHHHHhh
Confidence 99999999999866 66555444443
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.8e-17 Score=135.34 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=207.1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.+..+|..+...+...|++++|...|+++.+.+.. ...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 35678888999999999999999999999886543 8889999999999999999999999998764 44678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
..+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999987544 67788899999999999999999999997753 345678888999999999999
Q ss_pred HHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHH
Q 048616 168 IALQLWNDMVEKGFG-SY----ILVSDVLFDLLCD---MGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEAL 239 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (272)
+|...++.+.+.... ++ ...+..+...+.. .|++++|.+.++.+.+.. +.+...+..+...+...|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 999999998765321 11 3378889999999 999999999999998863 23566777899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHH
Q 048616 240 QNLSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~ 260 (272)
...+++..+.. |+....
T Consensus 469 ~~~~~~a~~~~----~~~~~~ 485 (514)
T 2gw1_A 469 ITLFEESADLA----RTMEEK 485 (514)
T ss_dssp HHHHHHHHHHC----SSHHHH
T ss_pred HHHHHHHHHhc----cccHHH
Confidence 99999999876 655443
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.1e-17 Score=135.11 Aligned_cols=237 Identities=13% Similarity=-0.012 Sum_probs=141.7
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC----------- 76 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 76 (272)
|+...|..+..++.+.|++++|++.++++.+.++ .+..+|..+..++.+.|++++|...|+++.+.+.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 6777777777788888888888888877776542 2556777777777777777777777776654431
Q ss_pred --------------------------------------------------------------------------------
Q 048616 77 -------------------------------------------------------------------------------- 76 (272)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (272)
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 048616 77 --------------------------------------YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTY 118 (272)
Q Consensus 77 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (272)
+.+..++..+...+...|++++|...++++.+... +...+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHH
Confidence 01122333344444455555555555555554432 24455
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++...+.. +.+...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 555555555555555555555555442 2344455566666666666666666666666554 23445556666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 199 GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 66666666666666542 2234455556666666677777777766665543
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=3.1e-16 Score=117.29 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=174.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5667888888999999999999999998764 346788888999999999999999999999887543 67788888899
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 125 FYWSNDLRSSWNLYCRMMGTGCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987732334 45677888888999999999999999988775 4456778889999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Q 048616 204 AEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEM 264 (272)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll 264 (272)
|..+++++.+.. +.+...+..+...+...|+.++|.++++++.+.. |+...+..++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY----PGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCCHHHHHHH
Confidence 999999988753 3455667778888999999999999999998866 6666555544
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=3.1e-16 Score=114.98 Aligned_cols=213 Identities=10% Similarity=-0.021 Sum_probs=117.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3444555555555555555555555555442 223445555555555555666666555555554322 44455555555
Q ss_pred Hhhc-CChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 048616 125 FYWS-NDLRSSWNLYCRMMGTGCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202 (272)
Q Consensus 125 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (272)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666555421122 23455555566666666666666666665543 233455566666666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEM 264 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll 264 (272)
+|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+.. |+......++
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF----PYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC----CCCHHHHHHh
Confidence 777766666654221344445555666666666676766666665544 5544444443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=4.4e-17 Score=124.59 Aligned_cols=221 Identities=11% Similarity=0.098 Sum_probs=179.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
+......|+++.|+..++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345567899999999998876543222234556678999999999999987755 2356778889999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (272)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999876545 455666777899999999999999987 46778899999999999999999999999
Q ss_pred HHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 176 MVEKGFGSYILV---SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 176 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...+++..+..
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 98875 33221 123344455669999999999999987 35577788889999999999999999999999876
No 30
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=1.6e-15 Score=114.95 Aligned_cols=224 Identities=11% Similarity=0.027 Sum_probs=196.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL----VGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
++.++..+-..+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56788888899999999999999999998843 56778889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 85 AAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999874 67888889999999 999999999999998875 55677778
Q ss_pred HHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 048616 157 VKLCKR----QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCD----MGKLVEAEKSFLEMIEKGHKPSQVSFRRIKA 228 (272)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (272)
...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|.++|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888887 899999999999998875 34667778888999 9999999999999998743 556677888
Q ss_pred HHHH----hhhHHHHHHHHHHHHhcC
Q 048616 229 LMEL----ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 229 ~~~~----~~~~~~a~~~~~~~~~~~ 250 (272)
.+.. .++.++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 899999999999999887
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=5.8e-17 Score=118.71 Aligned_cols=200 Identities=12% Similarity=-0.001 Sum_probs=161.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048616 42 SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121 (272)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (272)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4577888999999999999999999999999864 457888999999999999999999999999988644 67888899
Q ss_pred HHHHhhc-----------CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH
Q 048616 122 FRVFYWS-----------NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDV 190 (272)
Q Consensus 122 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (272)
...+... |++++|...+++..+.. +-+...+..+..++...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998764 3457788889999999999999999999999887 67788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
+..++...|++++|...|++..+.. +.+...+..+..++...|+.++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998863 2255667778999999999999999998754
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=2.6e-16 Score=117.75 Aligned_cols=209 Identities=13% Similarity=0.045 Sum_probs=179.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5788889999999999999999999998764 3367889999999999999999999999999874 3477889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998833334 45678888899999999999999999987764 4467888899999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (272)
|...++...+.. +.+...+..+...+...|++++|.++++++.+. .|+...+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 999999998765 456677888899999999999999999999886 45544433
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=6e-16 Score=113.46 Aligned_cols=213 Identities=9% Similarity=-0.048 Sum_probs=180.1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.+...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4567889999999999999999999999988643 367889999999999999999999999999874 44778899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 88 RNYCIA-KRLRDASGLMDEMVEKGLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999998322333 5778888999999999999999999997763 3457788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRR 225 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (272)
+++|...++...+.....+...+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999987753256677788888889999999999999998765 455554443
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=7.4e-16 Score=121.84 Aligned_cols=242 Identities=11% Similarity=0.036 Sum_probs=200.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ-PDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
+...|+.+...+.+.|++++|++.|++..+.... +...|+.+..++...|+ +++|+..|++..+.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3467888889999999999999999999987544 78889999999999996 999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCcH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR-QEKV 166 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 166 (272)
.++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++.+.+ +-+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998655 78899999999999999999999999998875 4467889999999988 5664
Q ss_pred HHH-----HHHHHHHHHcCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhh-----
Q 048616 167 EIA-----LQLWNDMVEKGFGSYILVSDVLFDLLCDMG--KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELAN----- 234 (272)
Q Consensus 167 ~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 234 (272)
++| +..++...... +-+...|..+...+...| ++++|.+.+.++ +. ...+...+..+..++...+
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 58888888765 446678888888888888 689999999888 33 2335556667888888864
Q ss_pred ----hHHHHHHHHHHH-HhcCCCCCCCHHHHH
Q 048616 235 ----KQEALQNLSNKM-ALFGPSMIPKREEYL 261 (272)
Q Consensus 235 ----~~~~a~~~~~~~-~~~~~~~~p~~~~~~ 261 (272)
..++|..+++++ .+.. |....|.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D----P~r~~~w 356 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD----TIRKEYW 356 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC----GGGHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC----chhHHHH
Confidence 358999999998 5544 7655443
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=9.5e-17 Score=119.29 Aligned_cols=201 Identities=14% Similarity=0.095 Sum_probs=102.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 344555555566666666666666666665432 245556666666666666666666666666543 234555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666655322 44555555566666666666666666554432 2244455555555555666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
|...++...+.. +.+..++..+..++...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666665555443 233445555555555556666666666555544
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=1.6e-15 Score=125.54 Aligned_cols=234 Identities=11% Similarity=0.017 Sum_probs=197.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+|..+...+...|++++|.+.|++..+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH
Confidence 457777788899999999999999998864 457889999999999999999999999999874 44688899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 91 CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999987543 56788899999999999999999999998764 445678888999999999999999
Q ss_pred HHHHHHHHcCC-----CccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhh
Q 048616 171 QLWNDMVEKGF-----GSYILVSDVLFDLLCDM----------GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANK 235 (272)
Q Consensus 171 ~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (272)
..++...+... ......+......+.+. |++++|...|++..+.. +.+...+..+...+...|+
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 99999876531 11122234445667777 99999999999998873 2356677789999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 048616 236 QEALQNLSNKMALFG 250 (272)
Q Consensus 236 ~~~a~~~~~~~~~~~ 250 (272)
.++|...|++..+..
T Consensus 478 ~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 478 IDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998876
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=2.2e-15 Score=124.74 Aligned_cols=163 Identities=11% Similarity=0.017 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR 162 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (272)
+..+...+...|++++|.+.+++..+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 4444455666677777777777776653 346666667777777777777777777776543 3345667777777777
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHH
Q 048616 163 QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNL 242 (272)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (272)
.|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 777777777777776654 3344566677777777777777777777776653 22344566677777777777777777
Q ss_pred HHHHHhcC
Q 048616 243 SNKMALFG 250 (272)
Q Consensus 243 ~~~~~~~~ 250 (272)
++++.+..
T Consensus 401 ~~~a~~~~ 408 (537)
T 3fp2_A 401 YDIAKRLE 408 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 77766543
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=4.9e-16 Score=115.40 Aligned_cols=203 Identities=17% Similarity=0.138 Sum_probs=159.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 355677888889999999999999999998864 456888999999999999999999999999987543 678888999
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (272)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999997764 4467788889999999999999999999998775 456778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
+|.+.++++.+.. +.+..++..+..++...|+.++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999998873 3356678889999999999999999999998876
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=8.9e-16 Score=116.15 Aligned_cols=224 Identities=8% Similarity=-0.079 Sum_probs=167.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 21 CKDRQVEKAYKIVEKMRDEDI---SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
...|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345788899999998887532 1245678888888889999999999999988764 346788888888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
+|.+.|++..+.... +...+..+...+.+.|++++|...++++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999988887443 5777888888899999999999999888765 3444444445555567788999999997777
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 178 EKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHK--P-SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
... +++...+ .++..+...++.++|.+.++...+.... | +...+..+...+...|++++|...+++..+..
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 654 3333343 3666777888888888888887554211 0 13566678888888999999999999888655
No 40
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-17 Score=131.50 Aligned_cols=205 Identities=12% Similarity=0.052 Sum_probs=93.3
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44569999999999999999999999653 47779999999999999999999988877764 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999998885 367789999999999999999999999976 47999999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
+|.+.+..+ .++.+|..++.+|+..|+++.|......+. ..|+. ...++..|.+.|.++++..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999987 267899999999999999999976665432 34444 4468899999999999999999865
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.6e-14 Score=110.28 Aligned_cols=239 Identities=9% Similarity=0.038 Sum_probs=189.0
Q ss_pred CHHhHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-------hcCCh-------hHHHH
Q 048616 9 DIVSYNCLIDVYCKD----RQV----EKAYKIVEKMRDEDISPDVISYTSIIGGLG-------LVGQP-------DKARD 66 (272)
Q Consensus 9 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~ 66 (272)
+...|...+....+. ++. ++|..+|++..+.. +-+...|..+...+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 456777777765554 233 78999999998864 337788888888776 35886 89999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 048616 67 VLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNAT-TYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (272)
+|++..+.-.+-+...|..++..+.+.|++++|.++|++..+..+. +.. .|..+...+.+.|++++|..+|++..+..
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999998312345678999999999999999999999999986332 333 78999999999999999999999998764
Q ss_pred CCCCHhhHHHHHHHHH-hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--cHH
Q 048616 146 CLPNTQSCMFLVKLCK-RQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG-HKP--SQV 221 (272)
Q Consensus 146 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~ 221 (272)
+++...|........ ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334444544333322 3799999999999988764 4467888999999999999999999999999863 455 355
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Q 048616 222 SFRRIKALMELANKQEALQNLSNKMALFGP 251 (272)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (272)
.|..++......|+.+.+..+++++.+..+
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 777788999999999999999999988773
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2.3e-15 Score=113.93 Aligned_cols=225 Identities=10% Similarity=-0.078 Sum_probs=178.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+..+|..+...+...|++++|...|++..+.... +..+|..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 5678999999999999999999999999886533 78899999999999999999999999999874 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 9999999999999999999874 444444555566677899999999998876653 3344444 46777788888899
Q ss_pred HHHHHHHHHHcCCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 169 ALQLWNDMVEKGFG---SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 169 a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
|...+......... .+...+..+...+.+.|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999887655321 12577888999999999999999999999876 4533 233355677788888887665
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=3.2e-14 Score=101.20 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......... +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 344444444444444444444444444432 123334444444444444444444444444433222 233333344444
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 126 YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
...++++.+...+.+..... +.+...+..+..++.+.|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444443321 2233334444444444444444444444444433 223334444444444444444444
Q ss_pred HHHHHHHH
Q 048616 206 KSFLEMIE 213 (272)
Q Consensus 206 ~~~~~~~~ 213 (272)
+.|++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=2.1e-14 Score=117.29 Aligned_cols=215 Identities=13% Similarity=0.007 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP-DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMD 104 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (272)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777666543 34788899999999999999 99999999999874 3468899999999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhhc---------CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--------CcHH
Q 048616 105 EMVEKGLSPNATTYNLFFRVFYWS---------NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ--------EKVE 167 (272)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 167 (272)
+..+.. |+...+..+...+... |++++|...+++..+.. +.+...+..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 6678888999999999 99999999999998764 44678889999999988 9999
Q ss_pred HHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFG--SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
+|...|++..+.... .+...|..+..+|...|++++|.+.|++..+... -+...+..+..++...|+.++|...+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999987521 5778899999999999999999999999988732 2455677788999999999999876554
Q ss_pred H
Q 048616 246 M 246 (272)
Q Consensus 246 ~ 246 (272)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.6e-14 Score=106.91 Aligned_cols=193 Identities=12% Similarity=0.032 Sum_probs=166.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHhH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS--PN----ATTY 118 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 118 (272)
...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999887 78899999999999999999999999998875322 12 5788
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
..+...+...|++++|...+++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999875 3443 35667789999999999998875 44567888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 199 GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999998874 3356778889999999999999999999998876
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=5.1e-14 Score=100.14 Aligned_cols=175 Identities=10% Similarity=0.001 Sum_probs=151.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 048616 78 PDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLV 157 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (272)
-++.+|..+...+.+.|++++|++.|++.++..+. +..++..+..++.+.|++++|...++...... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 36788999999999999999999999999988654 78889999999999999999999999987764 44567777788
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHH
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQE 237 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (272)
..+...++++.+...+....... +.+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88999999999999999988875 5567788889999999999999999999998873 235667888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHH
Q 048616 238 ALQNLSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 238 ~a~~~~~~~~~~~~~~~p~~~~~ 260 (272)
+|...|++..+.. |+...|
T Consensus 159 ~A~~~~~~al~~~----p~~a~~ 177 (184)
T 3vtx_A 159 EAVKYFKKALEKE----EKKAKY 177 (184)
T ss_dssp HHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHHhCC----ccCHHH
Confidence 9999999998754 766554
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.2e-14 Score=110.35 Aligned_cols=243 Identities=14% Similarity=0.054 Sum_probs=172.7
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE-------DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY----- 74 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (272)
+.+..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999998763 23335667888999999999999999999998764
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC-
Q 048616 75 -GC-YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK------GLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT- 144 (272)
Q Consensus 75 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 144 (272)
+. +....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 234567888999999999999999999998864 2212 3456778889999999999999999988653
Q ss_pred -----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC-------CCcc-------HHHHHHHHHHHHhcCCHHHH
Q 048616 145 -----GCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG-------FGSY-------ILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 145 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~g~~~~a 204 (272)
+..| ...++..+...+...|++++|...+++..+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 34578888899999999999999999987531 1111 12222333334455566666
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 205 EKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...+...... .+.+..++..+..++...|++++|..++++..+..
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 6677766543 12344566779999999999999999999987643
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.4e-14 Score=109.24 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=137.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEY-------GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK------G 110 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 110 (272)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998863 23345667888999999999999999999998764 2
Q ss_pred C-CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc---
Q 048616 111 L-SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT------GC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK--- 179 (272)
Q Consensus 111 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 179 (272)
- .....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|..++++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567788889999999999999999988653 22 223456788888999999999999999998764
Q ss_pred ---C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 180 ---G-FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 180 ---~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
+ .+....++..+...+...|++++|.+.++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 1233457788899999999999999999998763
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2.5e-12 Score=97.32 Aligned_cols=192 Identities=10% Similarity=0.061 Sum_probs=168.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
+..++..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888889999999999999999999984 356788889999999 999999999999999875 678888
Q ss_pred HHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048616 120 LFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR----QEKVEIALQLWNDMVEKGFGSYILVSDVL 191 (272)
Q Consensus 120 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (272)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999998875 67788888899988 999999999999999876 45566778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
Q 048616 192 FDLLCD----MGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL----ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 192 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 250 (272)
...+.. .+++++|.++|++..+.+ +...+..+...+.. .++.++|...+++..+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 888888 999999999999998874 45667778889999 999999999999998876
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.8e-13 Score=102.24 Aligned_cols=208 Identities=11% Similarity=0.090 Sum_probs=165.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD--VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+...|..+...|...|++++|++.+++..+....|+ ...|..+...+...|++++|+..|++..+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 445888899999999999999999999988432222 2348889999999999999999999999874 3467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc-
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK- 165 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 165 (272)
...+...|++++|.+.|++..+.... +...+..+...+...+++++|...|++..+.. +.+...+..+..++...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcc
Confidence 99999999999999999999887433 56677777734445569999999999998763 3346777778888888887
Q ss_pred --HHHHHHHHHHHHHcC-CCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH
Q 048616 166 --VEIALQLWNDMVEKG-FGSY------ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV 221 (272)
Q Consensus 166 --~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (272)
+++|...+++..+.. -.|+ ...|..+...|...|++++|.+.|++..+. .|+..
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 778888888876542 1222 257778889999999999999999999886 45443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=9e-13 Score=104.22 Aligned_cols=215 Identities=12% Similarity=0.086 Sum_probs=176.4
Q ss_pred CHHhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQ-VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
+...|+.+..++...|+ +++|+..|++..+.+.. +...|..+..++...|++++|+..|+++.+.. +-+...|..+.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg 207 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQ 207 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHH
Confidence 56789999999999997 99999999999987654 78899999999999999999999999999875 44788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh-cCChhhH-----HHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW-SNDLRSS-----WNLYCRMMGTGCLPNTQSCMFLVKLCK 161 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (272)
.++.+.|++++|+..|+++++..+. +...|+.+..++.. .|..++| +..+++..... +-+...|..+...+.
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 9999999999999999999998665 78899999999999 6665777 48888887764 345678888888888
Q ss_pred hcC--cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCcHHhH-HHHHH
Q 048616 162 RQE--KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG---------KLVEAEKSFLEM-IEKGHKPSQVSF-RRIKA 228 (272)
Q Consensus 162 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~p~~~~~-~~l~~ 228 (272)
..| ++++|.+.+..+ +.. +.+...+..+...|.+.| ..++|.++++++ .+. .|...-| ..+..
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGR 361 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHH
Confidence 888 689999999888 433 556678888999998874 358999999998 554 6655443 33444
Q ss_pred HHH
Q 048616 229 LME 231 (272)
Q Consensus 229 ~~~ 231 (272)
.+.
T Consensus 362 ~l~ 364 (382)
T 2h6f_A 362 SLQ 364 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.7e-12 Score=100.01 Aligned_cols=202 Identities=8% Similarity=0.039 Sum_probs=163.5
Q ss_pred CHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 9 DIVSYNCLIDVYCK-------DRQV-------EKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 9 ~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 56677777777653 5886 999999999998312236678999999999999999999999999985
Q ss_pred CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh-hcCChhhHHHHHHHHHhCCCCCCHh
Q 048616 75 GCYPD-AA-AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY-WSNDLRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 75 ~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (272)
.|+ .. +|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++|..+|++..+.. +-+..
T Consensus 129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 204 (308)
T 2ond_A 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 204 (308)
T ss_dssp --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 343 43 899999999999999999999999998754 34555544433322 3799999999999987753 34678
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKG-FGS--YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.+..++..+.+.|++++|..+|+...... +.| ....|..++....+.|+.++|..+++++.+.
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999863 344 4678888999999999999999999999876
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=7.8e-14 Score=113.89 Aligned_cols=197 Identities=9% Similarity=-0.018 Sum_probs=172.6
Q ss_pred cCHHhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQV-EKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
.+...|..+...+...|++ ++|++.|++..+.... +...|..+..+|.+.|++++|.+.|++..+.. |+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHH
Confidence 3678888999999999999 9999999999887533 68899999999999999999999999999864 678899999
Q ss_pred HHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc--------CChhhHHHHHHHHHhCCCC--
Q 048616 87 IRNYCIA---------KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS--------NDLRSSWNLYCRMMGTGCL-- 147 (272)
Q Consensus 87 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-- 147 (272)
...+... |++++|++.|++..+.... +...|..+..+|... |++++|...|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 9999999 9999999999999988644 688899999999988 99999999999998763 2
Q ss_pred -CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 148 -PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 148 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
-+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+..
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 477889999999999999999999999998876 44567788888899999999998876543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=5.3e-14 Score=112.67 Aligned_cols=239 Identities=10% Similarity=0.056 Sum_probs=181.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDV----ISYTSIIGGLGLVGQPDKARDVLKEMKEY----GC-YPDA 80 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 80 (272)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556677888999999999999999886433 33 46888889999999999999999988753 11 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHhhcCC-----------------hhhHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEK----GL-SPNATTYNLFFRVFYWSND-----------------LRSSWNLY 138 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 138 (272)
.++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888889999999999999999887754 11 1124567788889999999 99999988
Q ss_pred HHHHhC----CC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 139 CRMMGT----GC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF-----GSYILVSDVLFDLLCDMGKLVEAEKSF 208 (272)
Q Consensus 139 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (272)
++..+. +. .....++..+...+...|++++|...+++..+... ......+..+...+...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876432 11 12234777888899999999999999998775421 111237788889999999999999999
Q ss_pred HHHHHcCCC-----CcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 209 LEMIEKGHK-----PSQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 209 ~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 988654111 11345667888999999999999999988764
No 55
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=1.1e-14 Score=114.94 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=102.9
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
+|...|..++..+...|++++|++.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IG 129 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 129 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-------CC---------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHH
Confidence 67889999999999999999999988776664 3467888999999999999999998885 37778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVE 167 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (272)
..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999976 36899999999999999999999988 27889999999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 168 IALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
.|...... +..++.-...++..|.+.|++++|..+++...... +-....|+-+.-++.+
T Consensus 195 lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 195 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 99655443 22333334568899999999999999999987553 3344556655555554
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=1.1e-12 Score=92.89 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=104.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34566666777777777777777777765432 256666777777777777777777777776653 3355666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
+...|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777666533 245555666666666666666666666655442 23345555555555566666666
Q ss_pred HHHHHHHHH
Q 048616 170 LQLWNDMVE 178 (272)
Q Consensus 170 ~~~~~~~~~ 178 (272)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=1.9e-12 Score=102.88 Aligned_cols=232 Identities=9% Similarity=-0.060 Sum_probs=176.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C----CCCHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDE----DISP-DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--C----YPDAAAYN 84 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 84 (272)
....+...|++++|...|++..+. +-.+ ...++..+...+...|++++|+..+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677889999999999998763 1111 34678889999999999999999999987531 1 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLS-PN----ATTYNLFFRVFYWSNDLRSSWNLYCRMMG-----TGCLPNTQSCM 154 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (272)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999988754111 11 24678888999999999999999998866 32133456788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcHH-hHHHH
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEK----GFGSYILVSDVLFDLLCDMGK---LVEAEKSFLEMIEKGHKPSQV-SFRRI 226 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~-~~~~l 226 (272)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+.. .+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987654 212223345678888889999 67777777665 3344433 45568
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 227 KALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...|...|++++|...+++..+..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=4.8e-12 Score=93.07 Aligned_cols=207 Identities=9% Similarity=-0.041 Sum_probs=156.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888889999999999999999999998764477788888999999999999999999999987543 567888899
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHHH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNT-------QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS--YILVSDVLFD 193 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 193 (272)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++...+.+ +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999987753 2234 457777788889999999999999988764 33 3566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Q 048616 194 LLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAEM 264 (272)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll 264 (272)
++...| ...++++...+ ..+...|... .....+.+++|...+++..+.. |+......++
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~----p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS----PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC----CCCHHHHHHH
Confidence 776544 34455554442 2233444333 3445677899999999999876 6655444443
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1e-11 Score=102.85 Aligned_cols=236 Identities=8% Similarity=0.030 Sum_probs=182.0
Q ss_pred HhHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCChh-------HHHHHH
Q 048616 11 VSYNCLIDVYCKD----RQV----EKAYKIVEKMRDEDISPDVISYTSIIGGLGL-------VGQPD-------KARDVL 68 (272)
Q Consensus 11 ~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 68 (272)
..|...+...... ++. .++..+|++..... +-+...|......+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 5666666544332 232 47888999988763 3378888888888875 78987 899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC
Q 048616 69 KEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA-TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL 147 (272)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (272)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.... +. ..|..++..+.+.|++++|..+|++..+.. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 99986323446889999999999999999999999999986322 33 578888888899999999999999998763 2
Q ss_pred CCHhhHHHHHHH-HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCc--HHhH
Q 048616 148 PNTQSCMFLVKL-CKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH-KPS--QVSF 223 (272)
Q Consensus 148 ~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~ 223 (272)
.+...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 223333322222 336899999999999988764 44678899999999999999999999999998743 332 3467
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 224 RRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...+......|+.+.+..+++++.+.-
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777888888999999999999988765
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=6e-13 Score=94.23 Aligned_cols=162 Identities=11% Similarity=-0.001 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555666666666665554432 23445555555555556666666666655555432 23444555555555
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048616 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEK 206 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (272)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 2233444444444555555555555555444432 2233444444444444555555555
Q ss_pred HHHHHH
Q 048616 207 SFLEMI 212 (272)
Q Consensus 207 ~~~~~~ 212 (272)
.+++..
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=5.8e-13 Score=106.21 Aligned_cols=243 Identities=10% Similarity=0.012 Sum_probs=183.1
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC
Q 048616 6 VKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD----VISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCY 77 (272)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 77 (272)
..+....+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...+++..+. +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3456777888888999999999999999999886432 3 356888889999999999999999987643 212
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHhhcCC--------------------h
Q 048616 78 P-DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PN----ATTYNLFFRVFYWSND--------------------L 131 (272)
Q Consensus 78 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~ 131 (272)
| ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 2457788889999999999999999888754110 12 3467788888999999 9
Q ss_pred hhHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCCH
Q 048616 132 RSSWNLYCRMMGT----GCLP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF-----GSYILVSDVLFDLLCDMGKL 201 (272)
Q Consensus 132 ~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~ 201 (272)
++|...+++.... +..| ...++..+...+...|++++|...+++..+... .....++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999988876432 2111 234677888889999999999999988765411 11123777888899999999
Q ss_pred HHHHHHHHHHHHcC----CCCc-HHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 202 VEAEKSFLEMIEKG----HKPS-QVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 202 ~~a~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
++|...+++..+.. ..+. ..++..+...+...|++++|...+++..+.
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999876531 1111 345666888999999999999999987664
No 62
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=7.9e-11 Score=96.64 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=119.3
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 048616 9 DIVSYNCLIDVYCK----DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL----VGQPDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (272)
++..+..+-..|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555555 566777777776666553 44555556666666 666666776666666554 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhh
Q 048616 81 AAYNAAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQS 152 (272)
Q Consensus 81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (272)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555556666655 566666666666666553 34445555555554 556666666666655543 3444
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 048616 153 CMFLVKLCKR----QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCD----MGKLVEAEKSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (272)
+..+...|.. .++.++|...|+...+.+ +...+..+...|.. .+++++|.++|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555555554 555566666555555443 22333344444443 445555555555554432 222333
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHh
Q 048616 225 RIKALMEL----ANKQEALQNLSNKMAL 248 (272)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~ 248 (272)
.+...+.. .++.++|..+|++..+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 34444444 4444555555554443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=4.6e-13 Score=103.82 Aligned_cols=239 Identities=11% Similarity=0.008 Sum_probs=177.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD----VISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYP-DA 80 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (272)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445566677888999999999999999886432 3 357788889999999999999999887643 2122 25
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHhhcCC--------------------hhhHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGL-SPN----ATTYNLFFRVFYWSND--------------------LRSSW 135 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 135 (272)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778888899999999999999988765411 112 3367778888899999 89999
Q ss_pred HHHHHHHhC----CC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 136 NLYCRMMGT----GC-LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG-----FGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 136 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
..+++.... +. .....++..+...+...|++++|...+++..+.. ......++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876432 11 1123467778888899999999999998876541 1112336778888899999999999
Q ss_pred HHHHHHHHcCCC-Cc----HHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 206 KSFLEMIEKGHK-PS----QVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 206 ~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
+.+++..+.... ++ ..++..+...+...|++++|...+++..+.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999987653111 11 345666888899999999999999987654
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=8e-11 Score=96.60 Aligned_cols=189 Identities=12% Similarity=0.027 Sum_probs=98.0
Q ss_pred HHhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHH
Q 048616 10 IVSYNCLIDVYCK----DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGL----VGQPDKARDVLKEMKEYGCYPDAA 81 (272)
Q Consensus 10 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 81 (272)
...+..+-..|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3445555555655 666666666666666543 44445555555555 556666666666665553 344
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCCCCHhhH
Q 048616 82 AYNAAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCLPNTQSC 153 (272)
Q Consensus 82 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (272)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 222 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQ 222 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555554 556666666666655543 44455555555554 555556666655554443 23334
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 048616 154 MFLVKLCKR----QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCD----MGKLVEAEKSFLEMIE 213 (272)
Q Consensus 154 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 213 (272)
..+...|.. .+++++|...++...+.+ +...+..+...+.. .+++++|.++|++..+
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 444444433 445555555555544432 12222333333333 4444555555544443
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=5.5e-12 Score=92.75 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=157.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.|+..|......+...|++++|++.|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45688888999999999999999999999987654678888889999999999999999999999864 33567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC---HhhHHHHH
Q 048616 88 RNYCIAKRLRDASGLMDEMVEKGLSPNA-------TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN---TQSCMFLV 157 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 157 (272)
.++...|++++|++.+++..+..+. +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999987543 44 45777888899999999999999999876 444 45666676
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 223 (272)
.++...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+. .|+....
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 7765544 34455555443 23344444433 33567789999999999886 4554433
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.6e-13 Score=109.87 Aligned_cols=240 Identities=10% Similarity=0.009 Sum_probs=183.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE----D-ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY----GC-YPDA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 80 (272)
..|..+...|...|++++|.+.|++..+. + .+....++..+...+...|++++|...+++..+. +- ....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 57888999999999999999999987653 1 1224567888889999999999999999988754 11 2234
Q ss_pred HHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhhcCChhhHHHHH
Q 048616 81 AAYNAAIRNYCIAKR-----------------LRDASGLMDEMVEK----GLSP-NATTYNLFFRVFYWSNDLRSSWNLY 138 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (272)
.++..+...|...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 578888899999999 99999999887643 1111 2346778889999999999999999
Q ss_pred HHHHhCCCC-CC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048616 139 CRMMGTGCL-PN----TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF-----GSYILVSDVLFDLLCDMGKLVEAEKSF 208 (272)
Q Consensus 139 ~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (272)
++..+.... ++ ..++..+...+...|++++|...+++...... .....++..+...+...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 987553110 11 23778888999999999999999998775421 112467788899999999999999999
Q ss_pred HHHHHcC----CCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 209 LEMIEKG----HKP-SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 209 ~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
++..+.. ..+ ...++..+...+...|+.++|...+++..+..
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9887541 111 12356668899999999999999999987643
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=9.7e-13 Score=111.95 Aligned_cols=166 Identities=12% Similarity=-0.005 Sum_probs=140.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
++..|+.+-..|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999998886433 67888999999999999999999999998864 335788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
++.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999887544 67888889999999999999999999887764 3356788888899999999988
Q ss_pred HHHHHHHHHH
Q 048616 169 ALQLWNDMVE 178 (272)
Q Consensus 169 a~~~~~~~~~ 178 (272)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=1.5e-12 Score=110.75 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=148.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
+...|+.+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|++.|++.++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999874 346789999999999999999999999999988644 6889999999
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
++.+.|++++|++.|++..+.+ +-+...+..+..++.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998764 3467889999999999999999999999999876 4467788999999999999999
Q ss_pred HHHHHHHHHH
Q 048616 204 AEKSFLEMIE 213 (272)
Q Consensus 204 a~~~~~~~~~ 213 (272)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=5.4e-13 Score=100.95 Aligned_cols=227 Identities=14% Similarity=0.021 Sum_probs=155.2
Q ss_pred HhcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 048616 21 CKDRQVEKAYKIVEKMRD-------EDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY------GC-YPDAAAYNAA 86 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 86 (272)
...|++++|+..|++..+ .+.+....++..+...+...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345676767766666544 222335677888999999999999999999998754 22 2345678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC------C-CCCCHhh
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEK-----GL--SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT------G-CLPNTQS 152 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 152 (272)
...+...|++++|.+.+++..+. +. +....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988765 11 123567788889999999999999999988654 1 1223567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHc-------CCCc-cHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEK-------GFGS-YILVSDVLFDLLCDMGKLV------EAEKSFLEMIEKGHKP 218 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~p 218 (272)
+..+...+...|++++|...+++..+. ...+ ....+..+.......+... .+...++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 888889999999999999999988753 1111 2223333333333333322 22222222111 122
Q ss_pred -cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 219 -SQVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 219 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
...++..+...+...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345666899999999999999999987753
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1e-12 Score=101.83 Aligned_cols=241 Identities=12% Similarity=0.028 Sum_probs=181.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC-YPD---- 79 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---- 79 (272)
...|..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 467888999999999999999999987542 111 2356788888999999999999999998765311 112
Q ss_pred HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhhcCChhhH
Q 048616 80 AAAYNAAIRNYCIAKR--------------------LRDASGLMDEMVEK----GLSP-NATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 134 (272)
..++..+...+...|+ +++|.+.+++.... +..+ ....+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3477888899999999 99999999887543 1111 234677788899999999999
Q ss_pred HHHHHHHHhC----C-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC----C-ccHHHHHHHHHHHHhcCCHHHH
Q 048616 135 WNLYCRMMGT----G-CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF----G-SYILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 135 ~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~a 204 (272)
...+++..+. + ......++..+...+...|++++|...+++..+... . ....++..+...+...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999987543 1 111123778888899999999999999998765311 1 1145677888999999999999
Q ss_pred HHHHHHHHHcC----CCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 205 EKSFLEMIEKG----HKP-SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 205 ~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
...+++..+.. ..+ ...++..+...+...|++++|...+++..+..
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999886541 111 13356668999999999999999999988654
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4.7e-13 Score=106.76 Aligned_cols=240 Identities=11% Similarity=0.020 Sum_probs=181.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DISP-DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY-PD---- 79 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 79 (272)
..+|..+...+...|++++|...+++.... +..| ...++..+...+...|++++|...+++..+.... ++
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 467888999999999999999999987542 2122 2557788889999999999999999988753110 11
Q ss_pred HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhhcCChhhH
Q 048616 80 AAAYNAAIRNYCIAKR--------------------LRDASGLMDEMVEK----GLSP-NATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 134 (272)
..++..+...+...|+ +++|.+.+++..+. +..| ...++..+...+...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4478888899999999 99999999887643 1111 234677888899999999999
Q ss_pred HHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCc-cHHHHHHHHHHHHhcCCHHHH
Q 048616 135 WNLYCRMMGT----GCL-PNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG----FGS-YILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 135 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a 204 (272)
...+++..+. +.. ....++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 9999987542 111 112378888889999999999999999876531 111 145778889999999999999
Q ss_pred HHHHHHHHHcC----CCCc-HHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 205 EKSFLEMIEKG----HKPS-QVSFRRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 205 ~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
.+.+++..+.. ..+. ..++..+...+...|++++|...+++..+.
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999886541 1111 345667889999999999999999997654
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=1.7e-11 Score=97.20 Aligned_cols=229 Identities=10% Similarity=-0.067 Sum_probs=172.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C---CC-CHHHHHH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDI-SP----DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--C---YP-DAAAYNA 85 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~ 85 (272)
...+...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+++..+.. . .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456788999999999999876411 11 24578888899999999999999999887531 1 11 2457788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCCCCHhhHHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEK----GLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMG-----TGCLPNTQSCMF 155 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 155 (272)
+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++... .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 999999999999999999988753 1111 234677788999999999999999998866 43 333677888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcHH-hHHHHH
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKG----FGSYILVSDVLFDLLCDMGK---LVEAEKSFLEMIEKGHKPSQV-SFRRIK 227 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~-~~~~l~ 227 (272)
+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|..++++ .+..|+.. .+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 8999999999999999999987642 22234456666677778888 6777777665 33344433 444589
Q ss_pred HHHHHhhhHHHHHHHHHHHHhc
Q 048616 228 ALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
..|...|++++|...+++..+.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=1.1e-12 Score=99.33 Aligned_cols=160 Identities=17% Similarity=0.108 Sum_probs=124.9
Q ss_pred HHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHH
Q 048616 55 LGLVGQPDKARDVLKEMKEY-------GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK------GLSP-NATTYNL 120 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ 120 (272)
....|++++|+..+++..+. ..+....++..+...+...|++++|+..+++..+. +-.| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34568888888888877652 22234667889999999999999999999998865 2122 3567888
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc------C-CCccHH
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGT------G-CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK------G-FGSYIL 186 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 186 (272)
+...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999988653 1 1234567888889999999999999999998765 1 123456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
++..+...+...|++++|.+++++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999998764
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=3e-10 Score=92.52 Aligned_cols=219 Identities=11% Similarity=-0.026 Sum_probs=156.9
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE--------DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--- 75 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 75 (272)
+..+..||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344568999999999999999999999887541 112246789999999999999999999999886421
Q ss_pred ----CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH---HhhcCChhhHHHHHHHHHhCCC
Q 048616 76 ----CYPDAAAYNAAIRNYCIA--KRLRDASGLMDEMVEKGLSPNATTYNLFFRV---FYWSNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 76 ----~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 146 (272)
......++.....++... +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++..+.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 112356676666666554 4689999999999987543 45555555444 445678889999999887654
Q ss_pred CCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HH
Q 048616 147 LPNTQSCMFLVKLCKR----QEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS-QV 221 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~ 221 (272)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|.+.+++..+. .|+ ..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 3355556555555443 467889999999988775 556677888999999999999999999999886 343 44
Q ss_pred hHHHHHHHH
Q 048616 222 SFRRIKALM 230 (272)
Q Consensus 222 ~~~~l~~~~ 230 (272)
.+..+...|
T Consensus 283 ~~~~lg~~y 291 (472)
T 4g1t_A 283 LHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 454454444
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.8e-11 Score=98.68 Aligned_cols=246 Identities=14% Similarity=0.051 Sum_probs=118.9
Q ss_pred HHhHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 10 IVSYNCLIDVYCKD--RQVEKAYKIVEKMRDEDISPDVISYTSIIGG---LGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 10 ~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
..++.....++... +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++..+.. +.+..++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 34555554444443 4577888888777665322 33333333333 233455555555555555432 12333333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH------------------
Q 048616 85 AAIRNYCI----AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM------------------ 142 (272)
Q Consensus 85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------ 142 (272)
.+...+.. .|+.++|.+.+++....... +...+..+...|...|++++|...+++..
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 33322222 23344455555544443322 33444444444555555555544444433
Q ss_pred -----------------------------------hCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH-
Q 048616 143 -----------------------------------GTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL- 186 (272)
Q Consensus 143 -----------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 186 (272)
+.+ +.+..++..+...+...|++++|...|++..+....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 322 2233455666777788889999999998888765443321
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC-----------------------CCcHHhHHHHHHHHHHhhhHHHHHH
Q 048616 187 -VSDVLFD-LLCDMGKLVEAEKSFLEMIEKGH-----------------------KPSQVSFRRIKALMELANKQEALQN 241 (272)
Q Consensus 187 -~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (272)
.+..+.. .....|+.++|...|++..+... +.+..+|..+..++...|+.++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222 23467888888888877665321 2245567778888888999999999
Q ss_pred HHHHHHhcCCCCCCCHHHH
Q 048616 242 LSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~ 260 (272)
.|++..+.+. ..|+..++
T Consensus 452 ~y~kALe~~~-~~p~a~~~ 469 (472)
T 4g1t_A 452 DSERGLESGS-LIPSASSW 469 (472)
T ss_dssp -------------------
T ss_pred HHHHHHhcCC-CCCcHhhc
Confidence 9999887664 34555443
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=6.9e-11 Score=97.96 Aligned_cols=202 Identities=8% Similarity=0.043 Sum_probs=161.0
Q ss_pred CHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 9 DIVSYNCLIDVYCK-------DRQVE-------KAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 9 ~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56677777777775 69987 99999999986322346888999999999999999999999999985
Q ss_pred CCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HhhcCChhhHHHHHHHHHhCCCCCCHh
Q 048616 75 GCYPD-A-AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV-FYWSNDLRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 75 ~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (272)
.|+ . ..|..++..+.+.|++++|.++|++..+.... +...|...... +...|++++|..+|++..+.. +-+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence 344 3 58899999999999999999999999976322 33333322222 346899999999999987753 34578
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGF-GS--YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.+..++..+.+.|+.++|..+|+.....+. .| ....|...+......|+.+.+..++.++.+.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999988642 23 2457888888888999999999999998775
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=1.2e-10 Score=87.49 Aligned_cols=190 Identities=7% Similarity=-0.065 Sum_probs=115.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C-CCHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD---VISYTSIIGGLGLVGQPDKARDVLKEMKEYGC-Y-PDAAAY 83 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 83 (272)
+...+-.+...+.+.|++++|+..|+++.+..+. + ...+..+..++.+.|++++|+..|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666777777788888887777765322 2 45666677777777777777777777776531 1 123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 84 NAAIRNYCI--------AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 84 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
..+..++.. .|++++|...|+++.+..+. +......+... ...... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 666666766 77777777777777765322 22222111100 000000 0111345
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCcH
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGS--YILVSDVLFDLLCDM----------GKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
+...+.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 6677778888888888888877654221 334566666677655 7888888888888775 4444
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=2e-11 Score=93.26 Aligned_cols=194 Identities=9% Similarity=0.011 Sum_probs=120.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHH
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEY----GCYPD-AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PN----ATTYNLF 121 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 121 (272)
...|...|++++|...|++..+. |.+++ ..+|+.+..+|.+.|++++|+..+++..+.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888776543 22222 457777888888888888888888777643111 01 3466677
Q ss_pred HHHHhhc-CChhhHHHHHHHHHhCC----CCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH------HHHH
Q 048616 122 FRVFYWS-NDLRSSWNLYCRMMGTG----CLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI------LVSD 189 (272)
Q Consensus 122 ~~~~~~~-~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 189 (272)
...|... |++++|+..|++..+.. ..+. ..++..+...+.+.|++++|...+++..+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7777775 88888888887765431 1101 245677777888888888888888887765432221 1456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH------hHHHHHHHHH--HhhhHHHHHHHHHHHH
Q 048616 190 VLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV------SFRRIKALME--LANKQEALQNLSNKMA 247 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 247 (272)
.+..++...|++++|...|++..+. .|+.. .+..+..++. ..+++++|...|+++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6667777888888888888877653 33321 1223444443 2345667776666543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=9.8e-11 Score=92.54 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=146.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-C
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS-PD----VISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCY--P-D 79 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (272)
+++.+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|.+.+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 4556666777788888888888776542100 11 123455666777788888888888777642 221 2 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC--HhhH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP----NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN--TQSC 153 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 153 (272)
...+..+...+...|++++|...+++........ ...++..+...+...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 3455667777788888888888888777543211 124566677777888888888888877654211111 1111
Q ss_pred H----HHHHHHHhcCcHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcHH-
Q 048616 154 M----FLVKLCKRQEKVEIALQLWNDMVEKGFGS---YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GHKPSQV- 221 (272)
Q Consensus 154 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~- 221 (272)
. ..+..+...|++++|...++........+ ....+..+...+...|++++|.+.+++.... |..++..
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 1 22334667888888888887766543211 1224556677778888888888888776543 2222222
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 222 SFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
.+..+..++...|+.++|...+++...
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444466777788888888887777654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2.1e-10 Score=90.70 Aligned_cols=237 Identities=10% Similarity=-0.035 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHH
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVI----SYTSIIGGLGLVGQPDKARDVLKEMKEYGC-YPD----AAAY 83 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 83 (272)
+......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344456778899999999999987754322222 456667788889999999999998875311 112 2335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC--C--CHhh
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEK----GLS--P-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL--P--NTQS 152 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 152 (272)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67778899999999999999988753 221 2 2345666778899999999999999987543211 1 2346
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY-ILVSD-----VLFDLLCDMGKLVEAEKSFLEMIEKGHKPS---QVSF 223 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~ 223 (272)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|..++++.......++ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998875421111 11111 233457799999999999998865432211 2245
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 224 RRIKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
..+...+...|++++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788899999999999999987654
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=2.8e-10 Score=86.15 Aligned_cols=180 Identities=8% Similarity=0.050 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 64 ARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGL-SPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 34455555666777777777777777777665543 1245556666677777777777777777775
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHhcC--cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 143 GTGCLP-----NTQSCMFLVKL--CKRQE--KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 143 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+. .| +..+...+..+ ....| +.++|..+|+++.+.. |+......++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 24444555544 22223 6777777777765442 3212222333366677777777777775543
Q ss_pred c-----CC---CC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 214 K-----GH---KP-SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 214 ~-----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
. +. .| |..+...++......|+ .+.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 00 12 33344334444444554 5667777776644
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=7.5e-11 Score=90.14 Aligned_cols=203 Identities=11% Similarity=-0.029 Sum_probs=150.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DISPD-VISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYP-DA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (272)
..|+.....|...|++++|.+.|++..+. |-++. ..+|+.+..+|.+.|++++|+..+++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 32222 568899999999999999999999988753 2111 14
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH----
Q 048616 81 AAYNAAIRNYCIA-KRLRDASGLMDEMVEKGLSP-N----ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT---- 150 (272)
Q Consensus 81 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 150 (272)
.+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999988652111 1 346788899999999999999999999876433222
Q ss_pred --hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-c---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 048616 151 --QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-Y---ILVSDVLFDLLC--DMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 151 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 213 (272)
..+..+..++...|++++|...+++..+..... + ...+..++.++. ..+++++|.+.|+.+..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 156777788899999999999999987643211 1 113344556654 45678888888877643
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=7.1e-11 Score=78.74 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
.|..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 455666667777777777777777665432 245566666666777777777777777766553 234556666666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777766665322 455566666666666666666666666544
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=3.9e-10 Score=99.79 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=104.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
..+|..+..++.+.|++++|++.|.+. -+...|..++.++.+.|++++|.+.+....+.. +++...+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 445555555666666666666665432 144555556666666666666666665554432 222222235555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
|.+.+++++..... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 55555555322221 1 123444445555555666666666666553 2555555666666666666
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 048616 170 LQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6555543 1223444444444444444444433322 12233445566667777777777777776543
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=1.3e-10 Score=77.51 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++...+ +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 334444444444444444444433211 23333334444444444444444444443322 1223333344444444444
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
+++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444332 22233344444444455555555555544443
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=2.1e-10 Score=97.82 Aligned_cols=174 Identities=10% Similarity=-0.065 Sum_probs=143.6
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 21 CKDRQVEKAYKIVEKMR--------DEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 443 3366788889999999999999999999999864 3467889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL 172 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (272)
.|++++|++.|++..+.... +...+..+..++.+.|++++ ...|++..+.+ +-+...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999988544 67788899999999999999 99999998764 44677889999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGK 200 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (272)
|++..+.+ +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99887764 3345667777777766554
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.37 E-value=1.8e-10 Score=83.46 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
.+..++.+.|++++|+..|++..+..+. +...+..+...+...|++++|...|++..+.+ +-+..++..+..++...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3667777777777777777777776443 56677777777777777777777777776653 334556666666665444
Q ss_pred c--HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 048616 165 K--VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR 224 (272)
Q Consensus 165 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (272)
. .+.+...+..... ..|....+.....++...|++++|...|++.++. .|+.....
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 3 3334444444331 2232223333444556677888888888887764 56654433
No 88
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=6.4e-11 Score=94.01 Aligned_cols=203 Identities=8% Similarity=-0.012 Sum_probs=154.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDED--I----SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG----CYP 78 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 78 (272)
...+|..+...|...|++++|...+++..+.- . +....++..+...|...|++++|.+.+++..+.. ..+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 35688899999999999999999999886521 1 1124578888899999999999999999887531 111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCC
Q 048616 79 -DAAAYNAAIRNYCIAKRLRDASGLMDEMVEK----GL-SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLP 148 (272)
Q Consensus 79 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 148 (272)
...++..+..+|...|++++|.+.+++..+. +. +....++..+...+.+.|++++|...+++..+. +.+.
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1247888999999999999999999998872 22 234567888999999999999999999987543 1122
Q ss_pred CHhhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 149 NTQSCMFLVKLCKRQEK---VEIALQLWNDMVEKGFG-SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 149 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
....+..+...+...|+ +++|..+++.. +.. .....+..+...|...|++++|.+.+++..+.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23335667778888888 77777777665 222 33456778899999999999999999988653
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=3.9e-10 Score=84.58 Aligned_cols=186 Identities=12% Similarity=0.019 Sum_probs=124.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHhH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD---AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PN-ATTY 118 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 118 (272)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|++..+..+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55666677777888888888888888887753 123 566777778888888888888888888876331 11 3455
Q ss_pred HHHHHHHhh--------cCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 048616 119 NLFFRVFYW--------SNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSD 189 (272)
Q Consensus 119 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (272)
..+..++.. .|++++|...|++..+.. |+. .....+.... .+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 566667777 777888888887776642 322 2221111110 00000 011135
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHHh----------hhHHHHHHHHHHHHhcC
Q 048616 190 VLFDLLCDMGKLVEAEKSFLEMIEKGHKP--SQVSFRRIKALMELA----------NKQEALQNLSNKMALFG 250 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 250 (272)
.+...|.+.|++++|...|+++++..... ....+..+..++... |++++|...++++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 67788999999999999999998863221 234555677778766 89999999999999876
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=3.9e-10 Score=85.38 Aligned_cols=183 Identities=12% Similarity=0.080 Sum_probs=113.4
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 29 AYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC-YPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666544 34555556677777777888888888877765542 1255666677777788888888888888777
Q ss_pred HcCCCC-----CHHhHHHHHHHHhh--cC--ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 108 EKGLSP-----NATTYNLFFRVFYW--SN--DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 108 ~~~~~~-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
+. .| +..+...+..+++. .| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 34 23444455545222 23 777788888887554 34433334444467777888888888776554
Q ss_pred cC---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 179 KG---------FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 179 ~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.. -+.+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 21 03345555444444455565 677777777765 4554
No 91
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=9.1e-10 Score=79.98 Aligned_cols=177 Identities=12% Similarity=0.002 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 048616 28 KAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK----RLRDASGLM 103 (272)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 103 (272)
+|++.|++..+.| +...+..+...+...+++++|++.|++..+.| ++..+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 55666667777777777777777777776654 45566666666665 5 677777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCcHHHHHHHHH
Q 048616 104 DEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTGCL-PNTQSCMFLVKLCKR----QEKVEIALQLWN 174 (272)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 174 (272)
++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .....+..+-..|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776653 45555666666655 66777777777776655421 014455555556655 556666666666
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 048616 175 DMVEKGFGSYILVSDVLFDLLCDM-G-----KLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 216 (272)
...+.+ .+...+..|...|... | ++++|..+|+...+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 665541 1222344444444432 2 56666666666665543
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=3.6e-10 Score=89.57 Aligned_cols=200 Identities=11% Similarity=-0.005 Sum_probs=151.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DI-SP-DVISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYP- 78 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 78 (272)
..++..+...|...|+++.|...+++..+. +. .+ ...+++.+...+...|++++|.+.|++..+. +..+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 567888899999999999999999987652 11 11 2457788999999999999999999988753 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC----CCCC
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVE-----KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG----CLPN 149 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 149 (272)
...++..+..+|...|++++|.+.+++..+ .... ...++..+...+.+.|++++|...+++..+.. .+..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 235778899999999999999999999886 3322 36778888999999999999999999886531 1222
Q ss_pred HhhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 150 TQSCMFLVKLCKRQEK---VEIALQLWNDMVEKGFG-SYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
...+..+...+...++ +.+|..+++. .+.. .....+..+...|...|++++|.+.|++..+
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666777777 7777777765 3222 2334667788999999999999999998764
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=4.3e-10 Score=81.43 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=99.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
.+..++.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 38889999999999999999998764 4467889999999999999999999999999876 456677888888776655
Q ss_pred C--HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 048616 200 K--LVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYL 261 (272)
Q Consensus 200 ~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 261 (272)
. .+.+...++.... ..|....+.....++...|++++|...|++..+.. |+.....
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~----P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF----PSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS----CCHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCHHHHH
Confidence 4 3445556655532 23333333445666777899999999999988654 7755443
No 94
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.30 E-value=1.6e-09 Score=95.97 Aligned_cols=193 Identities=11% Similarity=0.089 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 45566677788888888777521 1222233322 455666666666644 245666677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 048616 96 LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (272)
+++|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 77777776442 255666667777777777777777776655443 22222334666666666666443332
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 176 MVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 1 223344445666666666666666666663 25566666666666666666666654
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=3.1e-09 Score=77.17 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC----ChhhHHHH
Q 048616 62 DKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN----DLRSSWNL 137 (272)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 137 (272)
.+|++.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888875 77888899999999999999999999999875 56777778888877 6 89999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCCHHHHHHHH
Q 048616 138 YCRMMGTGCLPNTQSCMFLVKLCKR----QEKVEIALQLWNDMVEKGFG-SYILVSDVLFDLLCD----MGKLVEAEKSF 208 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 208 (272)
|++..+.| +...+..+...|.. .+++++|...|+...+.+.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 55677777778876 88999999999999887632 125677778888888 88999999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHHh-h-----hHHHHHHHHHHHHhcC
Q 048616 209 LEMIEKGHKPSQVSFRRIKALMELA-N-----KQEALQNLSNKMALFG 250 (272)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 250 (272)
++..+. .++...+..|...|... | +.++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999886 23445666677777764 3 8999999999999888
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=1.6e-08 Score=77.16 Aligned_cols=235 Identities=11% Similarity=0.052 Sum_probs=180.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hh
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG--QPDKARDVLKEMKEYGCYPDAAAYNAAIRNY----CI 92 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 92 (272)
...+....++|+++++.+...++. +...|+.--..+...+ ++++++++++.+..... -+..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 334445567999999999987544 6778898888888888 99999999999998753 3555665544444 45
Q ss_pred c---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChh--hHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc--
Q 048616 93 A---KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR--SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK-- 165 (272)
Q Consensus 93 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 165 (272)
. +++++++++++++.+...+ +..+|+--.-.+.+.+.++ ++++.++++.+.+ +-+...|+.-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 5 7899999999999998765 8888888888888888888 9999999998875 4477788777777777776
Q ss_pred ----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCcHHhHHHHHHHHHHhhhHHH
Q 048616 166 ----VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE-AEKSFLEMIEKG--HKPSQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 166 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 238 (272)
++++.+.++...... +-|...|+-+-..+.+.|+..+ +..+..++.+.+ -..+...+..++.++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999988876 6677888888888888887444 556666665432 12355667778999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHH
Q 048616 239 LQNLSNKMALFGPSMIPKREEYL 261 (272)
Q Consensus 239 a~~~~~~~~~~~~~~~p~~~~~~ 261 (272)
|.++++.+.+. ..|...-|-
T Consensus 277 A~~~~~~l~~~---~Dpir~~yW 296 (306)
T 3dra_A 277 SRTVYDLLKSK---YNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHT---TCGGGHHHH
T ss_pred HHHHHHHHHhc---cChHHHHHH
Confidence 99999998762 126554443
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=2.2e-09 Score=78.66 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=121.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCY-P-DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA--TTYN 119 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 119 (272)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666778888999999999999999876322 1 1357778888999999999999999999887443211 2344
Q ss_pred HHHHHHhh------------------cCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 120 LFFRVFYW------------------SNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 120 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
.+..++.. .|++++|...|+++.+.. |+. .......... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHH---
Confidence 44444443 345666666666665542 222 1111111000 0000000
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 181 FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ----VSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.....+...+.+.|++++|...|+++++. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01124566788999999999999999886 3443 356668889999999999999999988766
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=3.9e-09 Score=77.34 Aligned_cols=188 Identities=10% Similarity=-0.059 Sum_probs=130.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS-P-DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA--AAYN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 84 (272)
+...+..+...+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666778899999999999999999875332 1 1356788899999999999999999999986422111 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 048616 85 AAIRNYCI------------------AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC 146 (272)
Q Consensus 85 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (272)
.+..++.. .|+.++|...|+++++..+. +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 55555554 57899999999999987432 22222221111 01111110
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 147 LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 215 (272)
.....+...+.+.|++++|...|+.+.+...... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456678889999999999999887642221 2467778889999999999999999888763
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=2.6e-10 Score=97.21 Aligned_cols=172 Identities=10% Similarity=0.007 Sum_probs=142.2
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 56 GLVGQPDKARDVLKEMK--------EYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
...|++++|++.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 43 2446678888999999999999999999999987544 77889999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 128 SNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKS 207 (272)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 207 (272)
.|++++|...|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3356788889999999999999 99999998876 45667888999999999999999999
Q ss_pred HHHHHHcCCCCc-HHhHHHHHHHHHHhh
Q 048616 208 FLEMIEKGHKPS-QVSFRRIKALMELAN 234 (272)
Q Consensus 208 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 234 (272)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 9998765 555 345555666665533
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=4.3e-10 Score=94.01 Aligned_cols=154 Identities=8% Similarity=0.002 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
.|++++|++.|++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888888765432 57778888888888889999998888888764 34577888888888888999999988
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CcHHHHHHHHHHHHHc
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ---EKVEIALQLWNDMVEK 179 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (272)
+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888877543 57778888888888889999988888887653 34566777888888888 8888888888888776
Q ss_pred C
Q 048616 180 G 180 (272)
Q Consensus 180 ~ 180 (272)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1e-10 Score=80.08 Aligned_cols=143 Identities=10% Similarity=-0.086 Sum_probs=101.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLR 97 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (272)
..+...|++++|++.+....... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34556678888888888776542 1244556677888888888888888888888764 346778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHH-HHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNL-YCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
+|+..|++..+..+. +..++..+...|.+.|+++++.+. +++..+.. +-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 888888888877543 577788888888888888766554 46666543 334556665555555555
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=6e-10 Score=84.89 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 048616 77 YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFL 156 (272)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (272)
+.+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 445667778888899999999999999999987544 6778888999999999999999999988665 3444333222
Q ss_pred -HHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhh
Q 048616 157 -VKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELAN 234 (272)
Q Consensus 157 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 234 (272)
...+...++.+.|...+++..... +.+...+..+...+...|++++|.+.|.++.+..... +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233567777888888898888775 5567788889999999999999999999998874322 2456777999999999
Q ss_pred hHHHHHHHHHHHHh
Q 048616 235 KQEALQNLSNKMAL 248 (272)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (272)
+.+++...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 98888888877543
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=6.2e-10 Score=84.79 Aligned_cols=168 Identities=8% Similarity=-0.013 Sum_probs=136.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH-
Q 048616 42 SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNL- 120 (272)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 120 (272)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3456677788888999999999999999999874 3467888999999999999999999999988763 44443332
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcC
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-YILVSDVLFDLLCDMG 199 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 199 (272)
....+.+.++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667788888999999887764 4567888899999999999999999999999875332 2677889999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048616 200 KLVEAEKSFLEMIE 213 (272)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (272)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887653
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=2e-10 Score=80.89 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-YILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
+...+++..+.. +-+...+..+..++...|++++|...++++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 444444444331 2234444445555555555555555555554443221 12344455555555555555555555443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=9.8e-10 Score=91.83 Aligned_cols=155 Identities=8% Similarity=-0.046 Sum_probs=117.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNL 137 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (272)
.|++++|++.+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 345788899999999999999999999999987543 678888999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 048616 138 YCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM---GKLVEAEKSFLEMIEK 214 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 214 (272)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987764 4457788889999999999999999999988875 44567788889999999 9999999999999887
Q ss_pred CC
Q 048616 215 GH 216 (272)
Q Consensus 215 ~~ 216 (272)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=4.5e-10 Score=79.05 Aligned_cols=156 Identities=7% Similarity=-0.039 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN-YCIAK 94 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 94 (272)
....+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..+++..+.. |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444445555555555444433211 33444444444445555555555554443321 122222111111 11111
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 95 RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP-NTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
+..+|...+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222344444444443221 34444444444455555555555554444432111 1233444444444445444444444
Q ss_pred HH
Q 048616 174 ND 175 (272)
Q Consensus 174 ~~ 175 (272)
++
T Consensus 168 ~~ 169 (176)
T 2r5s_A 168 RR 169 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.21 E-value=2.2e-09 Score=82.62 Aligned_cols=215 Identities=15% Similarity=0.067 Sum_probs=148.2
Q ss_pred hcCCHHHHHHHHHHHhhC------CCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 048616 22 KDRQVEKAYKIVEKMRDE------DISPDV----ISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYP-DAAAYNAA 86 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 86 (272)
..|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+. +-.+ -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356778888888766542 112332 25677778888899999999999987653 2111 14578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--C-CC--CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCC-CHhhHHHH
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKG--L-SP--NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLP-NTQSCMFL 156 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 156 (272)
...|...|++++|+..|++..+.. . .+ ...++..+...|.. |++++|+..|++.... +..+ ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 899999999999999999876541 1 11 13567778888888 9999999999887543 1111 13577888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH---H---hHHH
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEK----GFGSY-ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ---V---SFRR 225 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~---~~~~ 225 (272)
...+.+.|++++|...+++..+. +..+. ...+..+..++...|++++|...|++.. . .|+. . ....
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~ 238 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALED 238 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHH
Confidence 89999999999999999988764 21111 2356667777888899999999999987 4 3322 1 2233
Q ss_pred HHHHHHHhhhHHHHHH
Q 048616 226 IKALMELANKQEALQN 241 (272)
Q Consensus 226 l~~~~~~~~~~~~a~~ 241 (272)
++.++ ..++.+.+..
T Consensus 239 l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 239 LLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHH-HTTCHHHHHH
T ss_pred HHHHH-HhcCHHHHHH
Confidence 45555 4566665555
No 108
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=1.3e-08 Score=86.08 Aligned_cols=237 Identities=8% Similarity=0.046 Sum_probs=178.2
Q ss_pred HhHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHH
Q 048616 11 VSYNCLIDVYCKDR-------QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR-DVLKEMKEYGCYPDAAA 82 (272)
Q Consensus 11 ~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 82 (272)
..|...+..--..+ ..+++..+|++....- +-....|......+.+.|+.++|. .+|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 56666666544333 1345677898888753 447888998899888999999997 999999875 4556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHhHHHHHHHHhhcCChhhHHHHHHHH
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGL---------SPN------------ATTYNLFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
|-..+...-+.|++++|.++|+++.+... .|+ ...|...+....+.++.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888999999999999999886410 132 236777888888899999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhc-CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 048616 142 MGTGCLPNTQSCMFLVKLCKRQ-EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-- 218 (272)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-- 218 (272)
.+.-..+....|...+..-.+. ++.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|+..+.....+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 7761122233443333322333 4589999999998876 35566777888998889999999999999998763321
Q ss_pred cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 219 SQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
....|...+..-...|+.+.+..+.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567778888889999999999999999877
No 109
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.18 E-value=2e-08 Score=81.50 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048616 47 SYTSIIGGLGLVG---QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA----KRLRDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 47 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
.+..+...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|.+.|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5556666666666 6666777777666665 23444445555555443 56667777776665 32 334444
Q ss_pred HHHHH-H--hhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----cHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048616 120 LFFRV-F--YWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE-----KVEIALQLWNDMVEKGFGSYILVSDVL 191 (272)
Q Consensus 120 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (272)
.+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|+... .| +......+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44444 2 34666677777777666554 3444455555554 33 6667776666655 22 33344444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
Q 048616 192 FDLLCD----MGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL----ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 192 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 250 (272)
...|.. ..++++|..+|+...+.|. ......|...|.. ..+.++|..+|++..+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444444 2366677777766666543 2233334444442 235666666666665555
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=1.9e-10 Score=78.79 Aligned_cols=142 Identities=8% Similarity=-0.047 Sum_probs=74.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhh
Q 048616 54 GLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRS 133 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (272)
.+...|++++|+..+++..... +-+...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3444556666666666554321 112334445566666666666666666666655432 45566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHH-HHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQL-WNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
|...|++..+.+ +-+...+..+...+.+.|+++++... ++...+.. +.+..+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666655542 22345555555566666655544333 34444443 233444444444444443
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=1.3e-08 Score=73.60 Aligned_cols=131 Identities=8% Similarity=-0.053 Sum_probs=105.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...+..+...+...|++++|++.|++.. .|+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3445567778888999999999998774 4578888999999999999999999999988764 4467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---------------CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSP---------------NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (272)
+...|++++|.+.|++..+..... ....+..+..++.+.|++++|...|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999988763321 12567778888888888888888888887663
No 112
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.14 E-value=8.4e-09 Score=83.69 Aligned_cols=226 Identities=13% Similarity=0.053 Sum_probs=140.1
Q ss_pred CHHhHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcC-----
Q 048616 9 DIVSYNCLIDVYCKDR-----QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP---DKARDVLKEMKEYG----- 75 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~----- 75 (272)
+...+..+-..+...| ++++|...|++..+.|.. + .+..|...|...+.. .++.+.+.+..+.|
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~ 144 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAG 144 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHH
Confidence 4445555555444444 778888888888776533 2 344444444443321 12222222222211
Q ss_pred ---------------------------CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 76 ---------------------------CYPDAAAYNAAIRNYCIAK---RLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 76 ---------------------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
...++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 1233346677777777788 888888888888877653 555555566666
Q ss_pred hhc----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 126 YWS----NDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL-C--KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 126 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
... +++++|..+|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 554 68888888888876 32 34445555554 3 45788888888888887766 4455556666665 4
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
Q 048616 199 G-----KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL----ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 199 g-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 250 (272)
| ++++|.++|++.. . -+......+...|.. ..+.++|..+|++..+.|
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5 8888888888776 2 244555556666665 338888888888887766
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=8.4e-09 Score=79.29 Aligned_cols=194 Identities=11% Similarity=-0.009 Sum_probs=139.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE----DIS-PDVISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCYP-DA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (272)
..|+.....|...|++++|.+.|.+..+. +-. ....+|+.+...|.+.|++++|+..|++..+. |-.. ..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 47888888899999999999999987653 111 11457888899999999999999999987653 2111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCCC-H
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP-----NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLPN-T 150 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 150 (272)
.++..+...|.. |++++|+..|++..+..... ...++..+...+.+.|++++|+..|++.... +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 577888888988 99999999999887542111 1456788889999999999999999988653 21122 2
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-c---HHHHHHHHHHHHhcCCHHHHHHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-Y---ILVSDVLFDLLCDMGKLVEAEKS 207 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~ 207 (272)
..+..+..++...|++++|...|++.. ..... + ......++.++ ..|+.+.+.++
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 356666777788899999999999988 43211 1 12334455555 56777666553
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=1e-07 Score=72.63 Aligned_cols=208 Identities=10% Similarity=0.056 Sum_probs=138.8
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 32 IVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA---YNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
.+.++..-...|+..+...+...+.-.- + .+.......+... +...+..+...|++++|.+.+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444344567666666665553221 1 1111111222222 33346778889999999999999887
Q ss_pred cCC-CCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 109 KGL-SPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL-PN----TQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 109 ~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
... .|+. ..+..+...+...+++++|...+++....... ++ ..+++.+..+|...|++++|...+++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 532 1221 12334666777788999999999998764222 22 23688888999999999999999999874
Q ss_pred c-----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHHhh-hHHHHHHHHHHH
Q 048616 179 K-----GFGS-YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GHKPS-QVSFRRIKALMELAN-KQEALQNLSNKM 246 (272)
Q Consensus 179 ~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 246 (272)
. +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ...|..+..++...| +.++|...+++.
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2 1122 2347788999999999999999999987653 22222 456777888999999 469999988887
Q ss_pred Hh
Q 048616 247 AL 248 (272)
Q Consensus 247 ~~ 248 (272)
..
T Consensus 264 l~ 265 (293)
T 3u3w_A 264 SF 265 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=3.4e-08 Score=75.32 Aligned_cols=165 Identities=8% Similarity=-0.084 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhH
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGC-YPDA----AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PN----ATTY 118 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 118 (272)
...+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999987432 2221 13345667777788999999999999974322 22 2368
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHh----C-CCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCC-ccHHH
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRMMG----T-GCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEK----GFG-SYILV 187 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 187 (272)
+.+...|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +.. .-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8899999999999999999998863 1 11222 347888999999999999999999987643 212 22567
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 048616 188 SDVLFDLLCDMGK-LVEAEKSFLEMIE 213 (272)
Q Consensus 188 ~~~li~~~~~~g~-~~~a~~~~~~~~~ 213 (272)
|..+..++.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999999995 6999999988754
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.10 E-value=2.9e-08 Score=71.78 Aligned_cols=129 Identities=10% Similarity=-0.063 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
.+..+...+...|++++|+..|++.. .|+...+..+...+.+.|++++|.+.|++..+... .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556777888999999999998773 56888999999999999999999999999988754 36778888999999
Q ss_pred hcCChhhHHHHHHHHHhCCCC--------------C-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048616 127 WSNDLRSSWNLYCRMMGTGCL--------------P-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (272)
..|++++|...|++..+.... | ....+..+..++.+.|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998775311 1 12567778888889999999999998888764
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.08 E-value=1.7e-08 Score=69.85 Aligned_cols=96 Identities=14% Similarity=0.032 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
.|..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555544321 134445555555555555555555555555442 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048616 92 IAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (272)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555555544
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.7e-08 Score=66.77 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|...-..|.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45555666666666666666666666654322 55566666666666666666666666666553 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 048616 91 CIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (272)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666665
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=1.4e-09 Score=82.57 Aligned_cols=99 Identities=10% Similarity=-0.077 Sum_probs=63.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556666666677777777777777766654322 55666666666777777777777777666542 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048616 89 NYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (272)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 677777777777776666544
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=2.4e-08 Score=65.31 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=62.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666666667777777777777666543 2245566666666666677777777776666543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 048616 90 YCIAKRLRDASGLMDEMVEKG 110 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (272)
+...|++++|...++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666667777776666666553
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=1.5e-08 Score=66.83 Aligned_cols=120 Identities=10% Similarity=-0.023 Sum_probs=79.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45566667777777777777777777776643 2256666777777777777777777777777653 334666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL 131 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (272)
.+...|++++|...|++..+.... +...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777777665432 455555666666555543
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.2e-07 Score=70.92 Aligned_cols=207 Identities=10% Similarity=0.075 Sum_probs=162.8
Q ss_pred CHHhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hhc---CChhHHHHHHHHHHHcCCCCC
Q 048616 9 DIVSYNCLIDVYCKDR--QVEKAYKIVEKMRDEDISPDVISYTSIIGGL----GLV---GQPDKARDVLKEMKEYGCYPD 79 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~ 79 (272)
+...|+.--..+...| +++++++.++.+...+++ +..+|+.--..+ ... +++++++++++++.+.. +.+
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkn 143 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKN 143 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCC
Confidence 3456777777788888 999999999999987655 677777766665 555 78999999999999875 458
Q ss_pred HHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC------hhhHHHHHHHHHhCCCCCCHh
Q 048616 80 AAAYNAAIRNYCIAKRLR--DASGLMDEMVEKGLSPNATTYNLFFRVFYWSND------LRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~ 151 (272)
..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+-....+...+. ++++++.++++.... +-|..
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~S 221 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPS 221 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCcc
Confidence 888888888888889988 999999999998765 88888877777777776 888999999988775 55788
Q ss_pred hHHHHHHHHHhcCcHH-HHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 152 SCMFLVKLCKRQEKVE-IALQLWNDMVEKG--FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.|+..-..+.+.|+.. .+..+..++.+.+ -..+...+..+...+.+.|+.++|.++++.+.+. ..|-.
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHH
Confidence 8888888888877643 3555666655432 1345677888999999999999999999999863 34433
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=6.2e-09 Score=78.99 Aligned_cols=194 Identities=9% Similarity=-0.059 Sum_probs=134.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56678888899999999999999999999874 347888999999999999999999999999987543 6788889999
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNT-QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLV 202 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (272)
++...|++++|...|++..+.+ |+. ..+...+....+.. .+ .-+..........+......+.. + ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999886542 211 11111121111111 11 11222333333444444444433 2 368899
Q ss_pred HHHHHHHHHHHcCCCCcHHhHH-HHHHHHHHh-hhHHHHHHHHHHHHhc
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFR-RIKALMELA-NKQEALQNLSNKMALF 249 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-~~~~~a~~~~~~~~~~ 249 (272)
+|.+.++...+. .|+..... .+...+... +..+++.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988887764 55554433 355555554 6788899999987653
No 124
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.04 E-value=5.5e-08 Score=82.21 Aligned_cols=214 Identities=8% Similarity=-0.005 Sum_probs=160.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCC
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAY-KIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG---------CYP 78 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 78 (272)
+...|-..+..+...|+.++|. ++|++.... .+.+...|...+...-+.|++++|.++|+++.+.. ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4566777777777889999996 999999875 34467778888888999999999999999988641 013
Q ss_pred C------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc-CChhhHHHHHHHHHhCC
Q 048616 79 D------------AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS-NDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 79 ~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 145 (272)
+ ..+|...+....+.|+.+.|.++|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 2 3468888888888999999999999998761112334444333333343 4589999999998776
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 048616 146 CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFG--SYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223 (272)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 223 (272)
.+-+...+...+......|+.+.|..+|+........ -....|...+..-.+.|+.+.+.++.+++.+. .|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 3445666778888888899999999999998876532 24578888999888999999999999999887 4444333
Q ss_pred HHH
Q 048616 224 RRI 226 (272)
Q Consensus 224 ~~l 226 (272)
..+
T Consensus 578 ~~f 580 (679)
T 4e6h_A 578 EEF 580 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=2.2e-08 Score=66.42 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=74.9
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048616 7 KPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAA 86 (272)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (272)
+.+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34556667777777777777777777777766532 256666667777777777777777777776653 2355666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh
Q 048616 87 IRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW 127 (272)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (272)
..++.+.|++++|.+.|++..+.... +...+..+...+.+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 77777777777777777776665322 23344444444443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.03 E-value=3.1e-07 Score=70.95 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.++.+-....+.+..++|+++++.+...++. +..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3444444445556678999999999987655 7778888888888888 5999999999999875 34777888777777
Q ss_pred Hhc-C-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChh--------hHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 91 CIA-K-RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLR--------SSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 91 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
.+. + ++++++++++++.+...+ +..+|+--.-.+.+.+.++ ++++.++++.+.+ +-|...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 889999999999987655 7788877666666666666 8999999998875 44777888888887
Q ss_pred HhcCc-------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHH
Q 048616 161 KRQEK-------VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKL--------------------VEAEKSFLEMIE 213 (272)
Q Consensus 161 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~ 213 (272)
.+.+. ++++.+.+++..... +-|...|+-+-..+.+.|+. .+..++..++..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 77775 788999998888776 56777887766666666653 334444444433
Q ss_pred cC----C-CCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHH
Q 048616 214 KG----H-KPSQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 214 ~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 260 (272)
.+ . .++...+..++..|...|+.++|.++++.+.+. ..|-..-|
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~---~dpir~~y 339 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE---YDQMRAGY 339 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCGGGHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---hChHHHHH
Confidence 21 1 245566667899999999999999999998643 23554444
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.02 E-value=4.3e-08 Score=67.73 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHH
Q 048616 233 ANKQEALQNLSN 244 (272)
Q Consensus 233 ~~~~~~a~~~~~ 244 (272)
.|++++|...+.
T Consensus 130 ~~~~~~A~~~~~ 141 (166)
T 1a17_A 130 QKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHccc
Confidence 334444443333
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=8.3e-08 Score=73.17 Aligned_cols=169 Identities=8% Similarity=-0.080 Sum_probs=124.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD-----AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS---PN-- 114 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 114 (272)
...+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44566678888899999999999988876532211 123445667778889999999999988754221 12
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC----C-Cc
Q 048616 115 ATTYNLFFRVFYWSNDLRSSWNLYCRMMG---T-GCLP--NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG----F-GS 183 (272)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~ 183 (272)
..+++.+...|...|++++|...+++..+ . ...+ ...++..+...|...|++++|...+++..+.. . ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788899999999999999999988752 2 1111 12578888899999999999999998876432 1 11
Q ss_pred cHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048616 184 YILVSDVLFDLLCDMGKLVEA-EKSFLEMIE 213 (272)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 213 (272)
-..+|..+...+.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 256788889999999999999 777877654
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=2.1e-08 Score=70.36 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=51.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HhhcCCh--hh
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV-FYWSNDL--RS 133 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 133 (272)
..|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555442 234445555555555555555555555555544221 33344444444 3344444 44
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 134 SWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
|...+++..+.. +.+...+..+...+...|++++|...++...+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444332 11233333333444444444444444444433
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=5.3e-07 Score=68.70 Aligned_cols=168 Identities=8% Similarity=-0.023 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCC---CCC--
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA-----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGC---LPN-- 149 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 149 (272)
...+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556777889999999999999988876432111 2234455667788999999999998865321 122
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHH---cC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-
Q 048616 150 TQSCMFLVKLCKRQEKVEIALQLWNDMVE---KG-FGS--YILVSDVLFDLLCDMGKLVEAEKSFLEMIEKG----HKP- 218 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p- 218 (272)
..+++.+...|...|++++|...+++..+ .. -.+ ...++..+...|...|++++|.+.+++..+.. ..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34788889999999999999999999873 21 111 22578889999999999999999999886542 111
Q ss_pred cHHhHHHHHHHHHHhhhHHHH-HHHHHHHH
Q 048616 219 SQVSFRRIKALMELANKQEAL-QNLSNKMA 247 (272)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 247 (272)
-..+|..+...+...|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145677789999999999999 77777754
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=4.8e-08 Score=64.53 Aligned_cols=95 Identities=9% Similarity=-0.068 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
.+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.++.... +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444444555555555555555544432 223444444444555555555555555544444322 3444444444444
Q ss_pred hcCChhhHHHHHHHHHh
Q 048616 127 WSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (272)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=1.4e-08 Score=71.27 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=100.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 048616 21 CKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN-YCIAKRL--R 97 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 97 (272)
...|++++|...+++..+... .+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 457889999999999887643 377889999999999999999999999998764 3467788888888 7789998 9
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 048616 98 DASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (272)
+|...+++..+.... +...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999987543 67788889999999999999999999998763
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.97 E-value=7e-08 Score=62.99 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 33444444444444444444444444332 12333344444444444444444444444443321 12333333334444
Q ss_pred hcCChhhHHHHHHHH
Q 048616 127 WSNDLRSSWNLYCRM 141 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~ 141 (272)
..|++++|...++++
T Consensus 89 ~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 89 KQGDYDEAIEYYQKA 103 (125)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 444444444444433
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.97 E-value=1.5e-08 Score=72.56 Aligned_cols=155 Identities=13% Similarity=0.009 Sum_probs=83.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC
Q 048616 21 CKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY----GCY-PDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 95 (272)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567778887755444332 2234566777777777777777777777776641 111 123456666667777777
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcC
Q 048616 96 LRDASGLMDEMVEK----GLSP--NATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLP-NTQSCMFLVKLCKRQE 164 (272)
Q Consensus 96 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~ 164 (272)
+++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.... +... ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665543 1011 1233455556666666666666666655321 1000 0122344444555555
Q ss_pred cHHHHHHHHHHH
Q 048616 165 KVEIALQLWNDM 176 (272)
Q Consensus 165 ~~~~a~~~~~~~ 176 (272)
++++|...+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=8e-08 Score=71.88 Aligned_cols=187 Identities=7% Similarity=-0.141 Sum_probs=91.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCC---------------
Q 048616 22 KDRQVEKAYKIVEKMRDEDISPDVISYTSI-------IGGLGLVGQPDKARDVLKEMKEYGCYPD--------------- 79 (272)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (272)
..++.+.|.+.|.+..+..+. ....|..+ ...+.+.++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456677777777766665433 44555555 2333333334444433333322 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC--H
Q 048616 80 -------AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN--T 150 (272)
Q Consensus 80 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 150 (272)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334455556666666666666555432 222233444445566666666666665333221 110 1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGS--YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
..+..+-.++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 244445555566666666666666555322112 2223334444555666666666666666554
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=1.6e-08 Score=69.09 Aligned_cols=126 Identities=10% Similarity=-0.000 Sum_probs=91.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
...+...+.+.+...+.+.++ .+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~l~~~~~~~~~l~~a-------l~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~ 78 (151)
T 3gyz_A 8 NESISTAVIDAINSGATLKDI-------NAIP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAA 78 (151)
T ss_dssp -CHHHHHHHHHHHTSCCTGGG-------CCSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHH-------hCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334555666666555444333 3321 1245567777788888888888888888888764 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
++...|++++|+..|++.....+. +...|..+..+|.+.|++++|...|++..+.
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888877543 5677778888888888888888888888765
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=2.4e-08 Score=71.49 Aligned_cols=157 Identities=11% Similarity=-0.006 Sum_probs=102.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHhhcCC
Q 048616 56 GLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK----GLS-PNATTYNLFFRVFYWSND 130 (272)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 130 (272)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 2235667888888888899999999888887752 111 123456677778888888
Q ss_pred hhhHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCcc--HHHHHHHHHHHHhcC
Q 048616 131 LRSSWNLYCRMMGT----GCLP--NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKG---FGSY--ILVSDVLFDLLCDMG 199 (272)
Q Consensus 131 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g 199 (272)
+++|...+++.... +..| ....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776442 2111 23456667777888888888888887765321 0111 234566777788888
Q ss_pred CHHHHHHHHHHHHH
Q 048616 200 KLVEAEKSFLEMIE 213 (272)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (272)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888776653
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=7.3e-08 Score=63.81 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFY 126 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (272)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 34444444444444444444444444331 123334444444444444444444444444433221 3333334444444
Q ss_pred hcCChhhHHHHHHHH
Q 048616 127 WSNDLRSSWNLYCRM 141 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~ 141 (272)
+.|++++|...+++.
T Consensus 96 ~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 96 AMKDYTKAMDVYQKA 110 (133)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444443
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.94 E-value=5.5e-08 Score=75.74 Aligned_cols=132 Identities=11% Similarity=-0.042 Sum_probs=83.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD--------------AAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+...+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555666666666666666666666665432111 366677777777777777777777777766
Q ss_pred CCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH-HHHHHHHH
Q 048616 110 GLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA-LQLWNDMV 177 (272)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 177 (272)
... +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...+..|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 56666777777777777777777777776553 33455666666677777777766 34555544
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=8.9e-08 Score=63.05 Aligned_cols=60 Identities=10% Similarity=-0.039 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3333344444444444444444443331 12333333344444444444444444444433
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=3.2e-07 Score=68.66 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=142.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPDAAAYNAA-------IRNYCIAKRLRDASGLMDEMVEKGLSPN--------------- 114 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 114 (272)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5799999999999999874 3356677766 45566666666666666555441 111
Q ss_pred -------HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--H
Q 048616 115 -------ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY--I 185 (272)
Q Consensus 115 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (272)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456778899999999999999887653 544455556667889999999999998554432 221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS--QVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKREEYLAE 263 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 263 (272)
..+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|...|+++.... |+......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~----P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH----PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHHHHHH
Confidence 4667788999999999999999999985433254 2345557888999999999999999999877 554444443
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=1e-07 Score=74.17 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=121.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHhHHHHHH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN--------------ATTYNLFFR 123 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 123 (272)
.+++++|+..++...+.. +-+...+..+...+.+.|++++|...|++..+...... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456666666665544331 12567888899999999999999999999998754322 478888999
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 4467888889999999999999999999998875 4466788888889999999998
Q ss_pred H-HHHHHHHHH
Q 048616 204 A-EKSFLEMIE 213 (272)
Q Consensus 204 a-~~~~~~~~~ 213 (272)
| ...+..|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 456666654
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=1.1e-07 Score=64.80 Aligned_cols=99 Identities=8% Similarity=0.068 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
...+..+...+.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|++..+.. +-+...+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 446667777777888888888888888777543 67777777778888888888888888776653 3345667777777
Q ss_pred HHhcCcHHHHHHHHHHHHHcC
Q 048616 160 CKRQEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~ 180 (272)
+...|++++|...|+...+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 778888888888887777653
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=2.3e-08 Score=68.09 Aligned_cols=97 Identities=7% Similarity=-0.139 Sum_probs=56.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++.....+. +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3445555556666666666666666665543 234555556666666666666666666666655332 44555556666
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 048616 125 FYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~ 143 (272)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=2.5e-07 Score=59.64 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=60.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
++..|..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 344556666666666666666666666655432 245556666666666666666666666666543 234555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048616 89 NYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (272)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 666666666666666666654
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.4e-07 Score=62.17 Aligned_cols=98 Identities=15% Similarity=0.009 Sum_probs=64.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445666666677777777777777776665322 55666667777777777777777777776653 2345666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 048616 90 YCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (272)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=2.2e-08 Score=68.16 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM 198 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (272)
..+...+.+.|++++|...|++....+ +.+...+..+..++...|++++|...++...... +.+...+..+..++...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 333444444444444444444443332 2233344444444444455555555544444433 22333444444455555
Q ss_pred CCHHHHHHHHHHHHH
Q 048616 199 GKLVEAEKSFLEMIE 213 (272)
Q Consensus 199 g~~~~a~~~~~~~~~ 213 (272)
|++++|.+.|+...+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.84 E-value=9.3e-07 Score=71.04 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=141.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPD----------------VISYTSIIGGLGLVGQPDKARDVLKEMKEYG-CYPD 79 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 79 (272)
...+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+.++.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3457789999999999999987533211 1236788999999999999999999887531 1122
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CC
Q 048616 80 A----AAYNAAIRNYCIAKRLRDASGLMDEMVEK----GLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GC 146 (272)
Q Consensus 80 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 146 (272)
. .+.+.+...+...|+.++|.+++++.... +..+. ..++..+...+...|++++|..++++.... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22333444455678999999999887643 22222 456778899999999999999999987432 11
Q ss_pred CC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 147 LP-NTQSCMFLVKLCKRQEKVEIALQLWNDMVEK----GFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 147 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2457888889999999999999999887643 11111 24566677778889999999988877654
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.83 E-value=2.8e-08 Score=71.17 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (272)
..+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|.+.|++..+... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 566677777888888888888888877764 44566777788888888888888888888877622 2444555677777
Q ss_pred HHhhhHHHHH-HHHHHHHhc
Q 048616 231 ELANKQEALQ-NLSNKMALF 249 (272)
Q Consensus 231 ~~~~~~~~a~-~~~~~~~~~ 249 (272)
...++.+++. ..++.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777766666 455555443
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=8.5e-08 Score=64.70 Aligned_cols=96 Identities=11% Similarity=-0.095 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
.+..+...+.+.|++++|...|++....++. +...|..+..++.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3444444555555555555555555544322 44455555555555555555555555555543 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048616 92 IAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (272)
..|++++|.+.|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=2.2e-07 Score=61.40 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC--YPD----AAAYN 84 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 84 (272)
..+..+-..+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45555666666677777777777666654322 555666666666667777777766666654321 111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.+..++...|++++|++.|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666665554
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.8e-07 Score=60.00 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=65.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3455666666777777777777777776653 335666777777777777777777777777766433 45666666777
Q ss_pred HhhcCChhhHHHHHHHHHhC
Q 048616 125 FYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (272)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766543
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=1.9e-05 Score=60.68 Aligned_cols=238 Identities=10% Similarity=0.004 Sum_probs=169.6
Q ss_pred HhHHHHHHHH---HhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCC
Q 048616 11 VSYNCLIDVY---CKDRQV-EKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ----------PDKARDVLKEMKEYGC 76 (272)
Q Consensus 11 ~~~~~li~~~---~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 76 (272)
..|..+...+ .+.|.+ ++|+++++.+...++. +..+|+.--..+...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~- 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence 3454444433 345554 4899999999987644 66667765555444333 678999999998864
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC-hhhHHHHHHHHHhCCCCCCHhhH
Q 048616 77 YPDAAAYNAAIRNYCIAK--RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSND-LRSSWNLYCRMMGTGCLPNTQSC 153 (272)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 153 (272)
+-+..+|+.-...+.+.+ ++++++.+++.+.+..+. |..+|+--.-.+...|. ++++++.++.+.+.+ +-|...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 447788887777777877 489999999999998765 88888887777788888 589999999998875 4477777
Q ss_pred HHHHHHHHhc--------------CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----------CCHHHHHHHH
Q 048616 154 MFLVKLCKRQ--------------EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM-----------GKLVEAEKSF 208 (272)
Q Consensus 154 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~ 208 (272)
+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+. +.++++.+.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 7666666554 56888999999888776 55677776554444444 4578999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHHH-----HHhhhHHHHHHHHHHHHhcCCCCCCCHHHH
Q 048616 209 LEMIEKGHKPSQVSFRRIKALM-----ELANKQEALQNLSNKMALFGPSMIPKREEY 260 (272)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 260 (272)
+++.+. .||. .|..+..+. ...+..+++...+.++++.. |-..-+
T Consensus 262 ~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D----p~r~~~ 311 (331)
T 3dss_A 262 KELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD----PMRAAY 311 (331)
T ss_dssp HHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC----GGGHHH
T ss_pred HHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC----cchhhH
Confidence 999886 5665 454322211 13466778889999998755 665443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=8.4e-07 Score=57.11 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=64.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666666777777777777777776653 235666666677777777777777777777665432 45566666666
Q ss_pred HhhcCChhhHHHHHHHHHhC
Q 048616 125 FYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (272)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=3.3e-07 Score=63.37 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=71.8
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI 87 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (272)
.+...|..+...+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35566777777777778888888877777765432 66677777777777777777777777777664 33566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 048616 88 RNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.++...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777777765
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=1e-07 Score=64.35 Aligned_cols=99 Identities=8% Similarity=-0.122 Sum_probs=74.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455666677778888888888888887764 346677777888888888888888888888877543 5666777778
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 048616 124 VFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (272)
++...|++++|...|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=3.6e-07 Score=65.31 Aligned_cols=161 Identities=8% Similarity=-0.082 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------H
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD---------------A 80 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~ 80 (272)
........|+++.+.+.|+.-.... ......+..+...+.+.|++++|+..|++..+...... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3334445566666666665333221 11456677777778888888888888888876421111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
..+..+..++...|++++|+..+++..+... .+...+..+..++...|++++|...|++..+.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 6777788888888888888888888887643 366777788888888888888888888876653 33556677777777
Q ss_pred HhcCcHHHHH-HHHHHHHHc
Q 048616 161 KRQEKVEIAL-QLWNDMVEK 179 (272)
Q Consensus 161 ~~~~~~~~a~-~~~~~~~~~ 179 (272)
...++.+++. ..+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777776666 455555443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.78 E-value=1.2e-07 Score=60.64 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PNATTYNLFFRVF 125 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 125 (272)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34444445555555555555555554432 223444455555555555555555555555544211 0244445555555
Q ss_pred hhc-CChhhHHHHHHHHHhC
Q 048616 126 YWS-NDLRSSWNLYCRMMGT 144 (272)
Q Consensus 126 ~~~-~~~~~a~~~~~~~~~~ 144 (272)
... |++++|.+.+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=9.8e-07 Score=59.45 Aligned_cols=99 Identities=13% Similarity=-0.067 Sum_probs=68.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD----VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYN 84 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (272)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 55667777777777777777777777777653 33 4566666777777777777777777776653 23456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKG 110 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (272)
.+..++...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67777777777777777777776653
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=1.9e-07 Score=61.48 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGC--YPD----AAAY 83 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (272)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777776653 23566667777777777777777777777765421 111 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048616 84 NAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121 (272)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (272)
..+..++...|++++|.+.|++..+.. |+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 666677777777777777777776653 344444333
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=4.6e-07 Score=60.39 Aligned_cols=98 Identities=10% Similarity=-0.071 Sum_probs=47.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
+...|..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444555555555555555555555554443221 34444555555555555555555555554432 223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~ 108 (272)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555554443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=2.2e-06 Score=56.99 Aligned_cols=100 Identities=9% Similarity=-0.089 Sum_probs=75.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048616 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (272)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 356677777888888888888888888877764 345677777888888888888888888888776543 566777777
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888776543
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=6.5e-07 Score=58.83 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=42.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--Ccc----HHHHHHHHH
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF--GSY----ILVSDVLFD 193 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~li~ 193 (272)
.+...+...|++++|...+++..... +.+...+..+...+...|++++|...+........ .++ ..++..+..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33334444444444444444443321 22333344444444444444444444444433311 011 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048616 194 LLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.+...|++++|.+.|+...+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=6.7e-07 Score=59.01 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHhHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS--PN----ATTYN 119 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 119 (272)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666677777777776666653 234556666666666667777776666666543211 11 12344
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555555443
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.4e-05 Score=61.75 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=152.2
Q ss_pred CHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C-ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDR-QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV-G-QPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
+..+|+.--..+...| .++++++.++.+...+++ +..+|+.-...+.+. + ++++++++++++.+.. +.+...|+.
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4456777777777778 599999999999998765 888999888888776 7 8999999999999764 457778876
Q ss_pred HHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC-------hhhHHHHHHHHHhCCCCCCH
Q 048616 86 AIRNYCIAKRLR--------DASGLMDEMVEKGLSPNATTYNLFFRVFYWSND-------LRSSWNLYCRMMGTGCLPNT 150 (272)
Q Consensus 86 l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 150 (272)
-...+.+.|.++ ++++.++++++..+. |...|+-....+.+.+. ++++++.+++..... +-|.
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~ 242 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNV 242 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCH
Confidence 666666666666 899999999998765 88889888888888776 678888888887764 4577
Q ss_pred hhHHHHHHHHHhcCcH--------------------HHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 151 QSCMFLVKLCKRQEKV--------------------EIALQLWNDMVEKG-----FGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
..|+.+-..+.+.|.. .....+..++...+ -.+.......+++.|...|+.++|.
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 7777766666655542 23333333333221 1356678888999999999999999
Q ss_pred HHHHHHHHcCCCCc
Q 048616 206 KSFLEMIEKGHKPS 219 (272)
Q Consensus 206 ~~~~~~~~~~~~p~ 219 (272)
++++.+.+. ..|-
T Consensus 323 ~~~~~l~~~-~dpi 335 (349)
T 3q7a_A 323 KVFEKLSSE-YDQM 335 (349)
T ss_dssp HHHHHHHHT-TCGG
T ss_pred HHHHHHHhh-hChH
Confidence 999998754 3443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.8e-06 Score=67.46 Aligned_cols=198 Identities=10% Similarity=-0.057 Sum_probs=139.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPD----------------AAAYNAAIRNYCIAKRLRDASGLMDEMVEKG-LSP 113 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 113 (272)
-.+.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++.++...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567789999999999999987532211 1246788999999999999999998877531 111
Q ss_pred CH----HhHHHHHHHHhhcCChhhHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHc--C--
Q 048616 114 NA----TTYNLFFRVFYWSNDLRSSWNLYCRMMG----TGCLPN-TQSCMFLVKLCKRQEKVEIALQLWNDMVEK--G-- 180 (272)
Q Consensus 114 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-- 180 (272)
+. ...+.+-..+...|+++++..+++.... .+..+. ..++..+...+...|++++|..++.++... +
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 1233333445567889999999887643 222332 457788899999999999999999987653 1
Q ss_pred -CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc--HHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 181 -FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK----GHKPS--QVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 181 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
-.....++..++..|...|++++|..++++.... +.+|. ...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223457888999999999999999999887643 11111 12344456667777888888887776643
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.3e-06 Score=60.31 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 048616 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCD 197 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (272)
+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...++...+.. +.+...|..+..++..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233444444445555555555555555554443 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 048616 198 MGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 198 ~g~~~~a~~~~~~~~~~ 214 (272)
.|++++|.+.|++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 55555555555555543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=4.5e-07 Score=57.88 Aligned_cols=97 Identities=8% Similarity=-0.051 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP--NTQSCMFLVK 158 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 158 (272)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34445555566666666666666666554322 44455555555555666666666655555442 22 3444555555
Q ss_pred HHHhc-CcHHHHHHHHHHHHHc
Q 048616 159 LCKRQ-EKVEIALQLWNDMVEK 179 (272)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~ 179 (272)
++... |++++|.+.+......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555544
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=3e-07 Score=60.15 Aligned_cols=91 Identities=11% Similarity=-0.099 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444455555555555554443221 44444444444555555555555555544432 1233444444444455555
Q ss_pred HHHHHHHHHHHHH
Q 048616 96 LRDASGLMDEMVE 108 (272)
Q Consensus 96 ~~~a~~~~~~~~~ 108 (272)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.2e-06 Score=57.71 Aligned_cols=98 Identities=10% Similarity=-0.089 Sum_probs=69.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD----AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN 119 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (272)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45566777777777888888888888777653 44 566677777777777777777777777765332 456666
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhC
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777776654
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=3.8e-07 Score=62.37 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS-PD----VISYTSIIGGLGLVGQPDKARDVLKEMKEYG----CYP-DA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 80 (272)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45566666666777777777777665542100 01 1345555666666666666666666654321 000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
..+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555566666666666665554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=2.1e-06 Score=56.06 Aligned_cols=97 Identities=9% Similarity=-0.178 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALME 231 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (272)
.+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..+.... +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455667778888888888888888765 446677778888888889999999998888876322 4556666888888
Q ss_pred HhhhHHHHHHHHHHHHhcC
Q 048616 232 LANKQEALQNLSNKMALFG 250 (272)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~ 250 (272)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8899999998888887644
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=5.3e-06 Score=54.47 Aligned_cols=94 Identities=6% Similarity=-0.092 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 048616 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDV---ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD---AAAYNAAI 87 (272)
Q Consensus 14 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 87 (272)
..+...+...|++++|.+.|++..+.... +. ..+..+..++.+.|++++|...|++..+... .+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHH
Confidence 33455666777777777777777664322 22 3566666777777777777777777766531 22 45566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 048616 88 RNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=9.8e-07 Score=60.25 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCCC-CHhh
Q 048616 83 YNAAIRNYCIAKRLRDASGLMDEMVEKGLS-PN----ATTYNLFFRVFYWSNDLRSSWNLYCRMMGT----GCLP-NTQS 152 (272)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 152 (272)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.... +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555554444322100 00 123334444444455555555444443221 0000 0223
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEK----GF-GSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
+..+...+...|++++|...+++..+. +. ......+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444555555555555444322 10 0112233444444555555555555555443
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=3e-07 Score=75.07 Aligned_cols=125 Identities=11% Similarity=-0.014 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
.|..+...+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455677889999999999999886433 68889999999999999999999999999874 346788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HhhcCChhhHHHHHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV--FYWSNDLRSSWNLYC 139 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (272)
+.|++++|++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987543 34455555555 888899999999998
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=9.3e-05 Score=56.94 Aligned_cols=191 Identities=8% Similarity=0.024 Sum_probs=140.0
Q ss_pred HHhcCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048616 55 LGLVGQPD-KARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR----------LRDASGLMDEMVEKGLSPNATTYNLFFR 123 (272)
Q Consensus 55 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (272)
..+.|+++ +|+++++++...+. -+..+|+.--..+...+. +++++.+++.+....++ +..+|+.-.-
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34566665 89999999998642 244555544333333333 67899999999988665 7888887777
Q ss_pred HHhhcC--ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--
Q 048616 124 VFYWSN--DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEK-VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM-- 198 (272)
Q Consensus 124 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 198 (272)
.+.+.+ .+++++.+++.+.+.+ +-+...|+.-...+...|. ++++.+.+..+.+.+ +.|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 777777 4899999999998875 4477788877777778887 689999999999887 55667777666655554
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHh-----------hhHHHHHHHHHHHHhcC
Q 048616 199 ------------GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELA-----------NKQEALQNLSNKMALFG 250 (272)
Q Consensus 199 ------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~ 250 (272)
+.++++.+.++..+.... -|...|+-+-..+.+. +..+++.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 458899999999988743 3666776544444443 56889999999999876
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=3.5e-06 Score=68.42 Aligned_cols=122 Identities=10% Similarity=-0.070 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD--------------AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (272)
.|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++.++....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 445555555566666666666666554321111 345555555555555555555555555554322
Q ss_pred CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 048616 113 PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIAL 170 (272)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (272)
+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555442 223344444444554555444443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=1.7e-06 Score=70.29 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=105.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPD--------------VISYTSIIGGLGLVGQPDKARDVLKEMKEYG 75 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (272)
...|..+-..+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45778888999999999999999999987532211 5788899999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHH-HHHHH
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWN-LYCRM 141 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~ 141 (272)
+.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999987543 55677788888888888877653 44444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.53 E-value=9.6e-06 Score=53.17 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHH
Q 048616 49 TSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA---AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN---ATTYNLFF 122 (272)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 122 (272)
..+...+...|++++|...|+++.+... .+. ..+..+..++.+.|++++|...|++..+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 3455566677777777777777766532 122 35666667777777777777777777765432 2 44555666
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.++...|++++|...|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777766554
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=5.7e-07 Score=58.35 Aligned_cols=86 Identities=14% Similarity=-0.030 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDED--ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (272)
.|++++|+..|++..+.+ -+-+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466666777777766643 12234556666666777777777777777766653 234566666666677777777777
Q ss_pred HHHHHHHHc
Q 048616 101 GLMDEMVEK 109 (272)
Q Consensus 101 ~~~~~~~~~ 109 (272)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=2.5e-06 Score=67.27 Aligned_cols=89 Identities=8% Similarity=-0.130 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
..+|..+..+|.+.|++++|++.+++.++.... +...+..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555666666666666666666666654322 45555556666666666666666666655442 2234445555555
Q ss_pred HHhcCcHHHHH
Q 048616 160 CKRQEKVEIAL 170 (272)
Q Consensus 160 ~~~~~~~~~a~ 170 (272)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.48 E-value=3.1e-05 Score=64.50 Aligned_cols=175 Identities=8% Similarity=-0.080 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048616 24 RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ----------PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA 93 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (272)
...++|++.++++.+.++. +..+|+.--.++...++ ++++++.++++.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 4467889999999887544 67778877777777776 899999999999875 34778888888888888
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC-ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-------
Q 048616 94 K--RLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN-DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ------- 163 (272)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 163 (272)
+ +++++++.++++.+.... +..+|+--...+.+.+ .++++++.++++.+.+ +-+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999998765 7888888888888888 8899999999988775 44677777777666553
Q ss_pred -------CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 164 -------EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
+.++++.+.+....... +-+...|.-+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788999998888775 5567778777777777776443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=8.1e-07 Score=72.52 Aligned_cols=122 Identities=12% Similarity=-0.011 Sum_probs=75.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCC
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSND 130 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (272)
+...+.+.|++++|++.+++..+.. +.+..++..+..++.+.|++++|++.+++..+.... +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3445566777777777777777653 334667777777777777777777777777776433 56667777777777777
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCcHHHHHHHHHH
Q 048616 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKL--CKRQEKVEIALQLWND 175 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 175 (272)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777777765542 1223333333333 5566666666666654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=5.1e-06 Score=57.14 Aligned_cols=99 Identities=9% Similarity=0.055 Sum_probs=62.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CC---------CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDE--------DI---------SPDVISYTSIIGGLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (272)
+..+...-..+.+.|++++|+..|.+..+. .. +.+...|..+..++.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888888988888888887653 00 1122455556666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 73 EYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+.. +.+...|..+..++...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 234555666666666666666666666666655
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=7.7e-07 Score=57.72 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=64.1
Q ss_pred hcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 57 LVGQPDKARDVLKEMKEYG--CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+..+. +...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888754 2334567778888888888888888888888877544 577777788888888888888
Q ss_pred HHHHHHHHhC
Q 048616 135 WNLYCRMMGT 144 (272)
Q Consensus 135 ~~~~~~~~~~ 144 (272)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=5.1e-06 Score=65.46 Aligned_cols=138 Identities=6% Similarity=-0.095 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
..+..+...+.+.|++++|++.|++.++.- +... ..... +..... .+.+..+|..+..++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 346667777888888888888888777530 0000 00011 111111 122345677777778
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhhhHHHH
Q 048616 161 KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEAL 239 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 239 (272)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+. .| +...+..+..++...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 345667777888888888888888888888776 34 444555577777777777666
Q ss_pred HH
Q 048616 240 QN 241 (272)
Q Consensus 240 ~~ 241 (272)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=0.00023 Score=58.30 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDE 105 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (272)
.+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHH
Confidence 355778899888753 446788888888889999999999999999987 33433332 23222222222 333
Q ss_pred HHHcC---------C---CCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCcHHHHHHH
Q 048616 106 MVEKG---------L---SPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKR-QEKVEIALQL 172 (272)
Q Consensus 106 ~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~ 172 (272)
+.+.- . ......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 33220 0 011245666677777788899999999998 321 2233444322222222 2369999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 173 WNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
|+...+.- +.+...+...++...+.|+.+.|..+|+.+. .....|...+..=...|+.+.+..++++...
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99988763 3334566778888889999999999999972 2567777788777888999999998888764
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.1e-05 Score=55.52 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=52.1
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH
Q 048616 150 TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV 221 (272)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (272)
...|..+..++.+.|++++|...++...+.+ +.+...|..+..++...|++++|...|+...+. .|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 4567777777888888888888888877765 445667777888888888888888888888775 55544
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.40 E-value=5.2e-06 Score=67.65 Aligned_cols=127 Identities=9% Similarity=-0.143 Sum_probs=95.5
Q ss_pred HHhhcCChhhHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc-----C--CCccHHHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGT-------GCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK-----G--FGSYILVSD 189 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 189 (272)
.+...|++++|+.++++..+. ..+....+++.+..+|...|++++|+.++++.... | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887432 11223467999999999999999999999887642 2 222346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCcHH-hHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 190 VLFDLLCDMGKLVEAEKSFLEMIEK-----GH-KPSQV-SFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.|...|...|++++|..++++..+. |. .|+.. +.+.+..++...+.+++++.+|+++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987643 32 23333 33446778888899999999999998754
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=3e-05 Score=51.79 Aligned_cols=111 Identities=12% Similarity=-0.017 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048616 24 RQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI----AKRLRDA 99 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 99 (272)
+++++|++.|++..+.|. |... +...|...+.+++|+++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777777777777662 2332 5556666666777777777777764 55666667777766 6777777
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHHHHHHHHHhCC
Q 048616 100 SGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 145 (272)
.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777664 45556666666666 667777777777766655
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.35 E-value=3.8e-06 Score=65.41 Aligned_cols=96 Identities=5% Similarity=-0.087 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH-H
Q 048616 117 TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDL-L 195 (272)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 195 (272)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 44555556666666666666666655442 2344555556666666666666666666655432 1122333333333 2
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 048616 196 CDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~ 214 (272)
...+..+++.+.|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 2344555566666665543
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1.8e-05 Score=53.75 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=58.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-----CH-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDIS-P-----DV-----ISYTSIIGGLGLVGQPDKARDVLKEMKEY---- 74 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 74 (272)
...+...-..+.+.|++++|+..|++..+..+. | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344556666777888888888888887764322 0 11 25666666666666666666666666553
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 75 -GCYP-DAAAY----NAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 75 -~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
.+.| +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123 23344 5555566666666666666655543
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=6.2e-06 Score=67.19 Aligned_cols=124 Identities=10% Similarity=0.008 Sum_probs=67.9
Q ss_pred HHhcCChhHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHhHHH
Q 048616 55 LGLVGQPDKARDVLKEMKEY-----G--CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-----GLS-P-NATTYNL 120 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~ 120 (272)
+...|++++|+.++++..+. | .+....+++.|...|...|++++|+.++++.++. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567777777777666532 1 1112346667777777777777777777665532 211 1 1234566
Q ss_pred HHHHHhhcCChhhHHHHHHHHHh-----CC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 121 FFRVFYWSNDLRSSWNLYCRMMG-----TG--CLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
|...|...|++++|..++++..+ .| .+....+...+-.++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777666666665432 11 111223334444455555666666666665543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=2.8e-06 Score=66.09 Aligned_cols=148 Identities=8% Similarity=-0.012 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLC 160 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (272)
..+..+...+.+.|++++|...|++..... |+... +...++..++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 446666777778888888888888877652 33221 222333333332221 13678888899
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHH-HHHhhhHHH
Q 048616 161 KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQV-SFRRIKAL-MELANKQEA 238 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~-~~~~~~~~~ 238 (272)
.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+. .|+.. .+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 456778889999999999999999999998764 45433 33444444 344566778
Q ss_pred HHHHHHHHHhcC
Q 048616 239 LQNLSNKMALFG 250 (272)
Q Consensus 239 a~~~~~~~~~~~ 250 (272)
+..+|++|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888999887655
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=2.5e-05 Score=53.02 Aligned_cols=96 Identities=8% Similarity=-0.068 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYP------DA-----AAYNAAIRNYCIAKRLRDASGLMDEMVEK----- 109 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 109 (272)
..+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556667778888888888888887653220 12 26777777777777777777777777664
Q ss_pred --CCCCCHHhH----HHHHHHHhhcCChhhHHHHHHHHH
Q 048616 110 --GLSPNATTY----NLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 110 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
.+. +...| .....++...|++++|+..|++..
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 321 33445 555566666666666666666553
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.25 E-value=0.00029 Score=57.69 Aligned_cols=189 Identities=13% Similarity=0.033 Sum_probs=126.9
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC------------
Q 048616 8 PDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG------------ 75 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------ 75 (272)
.+...|-..+..+.+.|+++.|..+|++.... +.+...|. .|+...+.++. ++.+.+.-
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------C
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence 34667777788888899999999999999987 33433332 23332222222 33333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh-cCChhhHHHHHHHHHhCCCCCCHhhHH
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW-SNDLRSSWNLYCRMMGTGCLPNTQSCM 154 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (272)
......+|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 0112345777777777888999999999999 32 22344445432222222 346999999999987642 22344455
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
..+....+.|+.+.|..+|+.+. .....|...+..=...|+.+.+.+++++..+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777778899999999999872 2567888888877888999999999988864
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=0.00021 Score=59.61 Aligned_cols=171 Identities=9% Similarity=0.025 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcC
Q 048616 60 QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR----------LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSN 129 (272)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (272)
..++|++.++++.+.+ +-+..+|+.--.++...|+ ++++++.++++.+...+ +..+|+.-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467788999888864 2355667666666666666 88899999998887665 7788887777788888
Q ss_pred --ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--------
Q 048616 130 --DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE-KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM-------- 198 (272)
Q Consensus 130 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 198 (272)
+++++++.++++.+.+ +-+...|+.-..++.+.| .++++.+.++++.+.+ +.+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6688999999888775 346777777777777778 7888888888887765 44666776666655552
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhh
Q 048616 199 ------GKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANK 235 (272)
Q Consensus 199 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (272)
+.++++.+++++.+.... -|...|.-....+.+.+.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 456788888888877532 255556655555544443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.7e-06 Score=55.23 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=33.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
+...|..+...+...|++++|++.|++..+... .+...+..+..++.+.|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555555555555555555554322 14444555555555555555555555555543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=0.00011 Score=48.96 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhh----cCChhhHH
Q 048616 60 QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYW----SNDLRSSW 135 (272)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 135 (272)
++++|++.|++..+.| .++.. +...|...+..++|.+.|++..+.| +...+..+-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 4444555555555666666655543 44445555555554 45555555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcC
Q 048616 136 NLYCRMMGTGCLPNTQSCMFLVKLCKR----QEKVEIALQLWNDMVEKG 180 (272)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (272)
.+|++..+.| +...+..+-..|.. .+++++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 23334444444444 445555555555544443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=7.4e-05 Score=47.90 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 133 SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
++...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666655543 3345566666666677777777777777766654 3345566666777777777777777777665
Q ss_pred Hc
Q 048616 213 EK 214 (272)
Q Consensus 213 ~~ 214 (272)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=6.9e-05 Score=45.52 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
.+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444445555555555555544432 223444444555555555555555555555444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=7.9e-05 Score=45.24 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
...|..+...+...|++++|+..|++..+... .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44555556666666666666666666655432 245555666666666666666666666666542 2234444444444
Q ss_pred HH
Q 048616 90 YC 91 (272)
Q Consensus 90 ~~ 91 (272)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.2e-05 Score=49.04 Aligned_cols=93 Identities=5% Similarity=-0.131 Sum_probs=61.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHh
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN------ATT 117 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 117 (272)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++..+.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 45566777777888888888888888887763 345677777788888888888888888887765322 2 334
Q ss_pred HHHHHHHHhhcCChhhHHHHH
Q 048616 118 YNLFFRVFYWSNDLRSSWNLY 138 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~ 138 (272)
+..+..++...|+++.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444455555555555544433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=5.5e-05 Score=48.51 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 28 KAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
.|++.|++..+... .+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666543 256667777777777777777777777777653 2345667777777777777777777777766
Q ss_pred Hc
Q 048616 108 EK 109 (272)
Q Consensus 108 ~~ 109 (272)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=3.2e-05 Score=52.40 Aligned_cols=97 Identities=16% Similarity=0.038 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 21 CKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQP----------DKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++..+.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556778888888888776543 777777777777777664 47777777777764 23566777777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048616 91 CIAK-----------RLRDASGLMDEMVEKGLSPNATTYNLF 121 (272)
Q Consensus 91 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (272)
...| ++++|++.|++.++. .|+...|...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7654 677777777777765 3444444333
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.94 E-value=0.00013 Score=49.43 Aligned_cols=86 Identities=3% Similarity=-0.111 Sum_probs=44.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcH----------HHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 048616 127 WSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKV----------EIALQLWNDMVEKGFGSYILVSDVLFDLLC 196 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (272)
+.+.+++|.+.+++..+.. +.+...|..+-.++...+++ ++|+..|++..+.+ +.+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445566666666655543 33455555555555555443 35555555555544 223344555555555
Q ss_pred hcC-----------CHHHHHHHHHHHHHc
Q 048616 197 DMG-----------KLVEAEKSFLEMIEK 214 (272)
Q Consensus 197 ~~g-----------~~~~a~~~~~~~~~~ 214 (272)
..| ++++|.+.|++.++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 443 455555555555543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.83 E-value=0.00015 Score=45.29 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=29.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444455555555555555555554432 1233444445555555555555555555444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=0.00025 Score=44.17 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 79 DAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
+...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566777777777777777777777777776443 455677777777777777777777776543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.72 E-value=0.002 Score=50.01 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=86.4
Q ss_pred CCCHhhHHHHHHHHHh--cC---ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cC--CHHHHH---HHHHHHH
Q 048616 42 SPDVISYTSIIGGLGL--VG---QPDKARDVLKEMKEYGCYPD-AAAYNAAIRNYCI---AK--RLRDAS---GLMDEMV 107 (272)
Q Consensus 42 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~ 107 (272)
+.+...|...+++... .+ +..+|..+|++..+.. |+ ...|..+.-+|.. .+ ...... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4567777777765432 22 3467888888888763 43 3444433333321 11 111111 1122111
Q ss_pred H-cCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH
Q 048616 108 E-KGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL 186 (272)
Q Consensus 108 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (272)
. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+.+....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 1 1124467777777777777789999999998887774 677777777788888899999999888887764 4444
Q ss_pred HH
Q 048616 187 VS 188 (272)
Q Consensus 187 ~~ 188 (272)
+|
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.003 Score=49.04 Aligned_cols=49 Identities=16% Similarity=-0.024 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 76 CYPDAAAYNAAIRNYC--IAK---RLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
.+.+...|...+.+.. ..+ +..+|..+|++.++..+. ....|..+..+|
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~ 243 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD 243 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3456667766665543 222 357788888888877332 234444433333
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.64 E-value=0.00042 Score=55.64 Aligned_cols=88 Identities=8% Similarity=-0.088 Sum_probs=47.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHhHH
Q 048616 54 GLGLVGQPDKARDVLKEMKEYG---CYP----DAAAYNAAIRNYCIAKRLRDASGLMDEMVEK-----GLS-P-NATTYN 119 (272)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 119 (272)
.+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++.++. |.. | ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665321 111 2345566666666666666666666655432 211 1 123455
Q ss_pred HHHHHHhhcCChhhHHHHHHHH
Q 048616 120 LFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
.|...|...|++++|+.++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666666666666666654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.0003 Score=56.47 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 46 ISYTSIIGGLGLVGQPDKARDVLKEMKEY-----G-CYP-DAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
.+++.+..+|...|++++|..++++..+. | -.| ...+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555555555555555544321 1 011 12344455555555555555555554443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00031 Score=43.43 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 19 VYCKDRQVEKAYKIVEKMRDEDISPDVI-SYTSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
.+.+.|++++|++.|++..+.... +.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555443211 333 4444455555555555555555555443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.0008 Score=53.98 Aligned_cols=61 Identities=11% Similarity=-0.054 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCcH-HhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 186 LVSDVLFDLLCDMGKLVEAEKSFLEMIEK-----GH-KPSQ-VSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
.+++.+..+|...|++++|..++++.++. |. .|+. .+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445555555555555555555544321 11 1222 22334555555555555555555543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.001 Score=53.41 Aligned_cols=90 Identities=10% Similarity=-0.042 Sum_probs=46.7
Q ss_pred HHHhhcCChhhHHHHHHHHHhCC---CCC----CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc-----C--CCccHHHH
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTG---CLP----NTQSCMFLVKLCKRQEKVEIALQLWNDMVEK-----G--FGSYILVS 188 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~ 188 (272)
..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++.+.... | .+....++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666554320 111 1245556666666666666666666554421 1 11122345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~ 212 (272)
+.|...|...|++++|..++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556666666666666666665543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.45 E-value=0.001 Score=40.99 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEKGFGSYIL-VSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
...+.+.|++++|...++...+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566777777777777777654 33445 6666777777777888888877777765
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.37 E-value=0.0062 Score=52.96 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=101.7
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 18 DVYCKDRQVEKAYK-IVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 18 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
......+++++|.+ ++..+ + +......++..+.+.|.++.|+++.++-.. -.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCH
Confidence 34456789999877 54221 1 122337788888889999998876632211 13345678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886543 3778899999999999999999999998743 334445555566666666655555
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 177 VEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
...| . ++.-..+|.+.|++++|.+++.++
T Consensus 734 ~~~~-~-----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG-K-----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC-c-----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5443 1 123334455667777777766554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.017 Score=50.27 Aligned_cols=104 Identities=15% Similarity=0.027 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
...++..+.+.|..+.|.++.+ +. ..-.......|+++.|.++.+.+ .+...|..+...+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 3667777888888888876652 11 11234456789999999886443 477899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
.++++.|++.|.++.+ |..+...+...++.+...++-+....
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998753 34455555556666655554444433
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.19 E-value=0.014 Score=39.15 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE---KVEIALQLWNDMVEKGFGS--YILVSDVLFDLLCDMGKLVEAEK 206 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 206 (272)
..+.+.|.+....+ .++..+...+..++++.+ +++++..+++++.+.+ .| ....+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44555555555554 356777777777777777 6668888888877765 23 23333445556788888888888
Q ss_pred HHHHHHHcCCCCcHH
Q 048616 207 SFLEMIEKGHKPSQV 221 (272)
Q Consensus 207 ~~~~~~~~~~~p~~~ 221 (272)
+++.+++. .|+..
T Consensus 93 y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHH--CTTCH
T ss_pred HHHHHHhc--CCCCH
Confidence 88888875 66543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.01 Score=36.22 Aligned_cols=66 Identities=6% Similarity=-0.066 Sum_probs=39.0
Q ss_pred CCHhhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 148 PNTQSCMFLVKLCKRQEK---VEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
.+...+..+..++...++ .++|..++++..+.+ +.+......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 466666666666654 334455555666666667777777777766655
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.17 E-value=0.01 Score=37.03 Aligned_cols=66 Identities=6% Similarity=-0.150 Sum_probs=35.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG------CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
+..-+..+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33344455555555566666655555554321 1123445555666666666666666666666554
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.15 E-value=0.012 Score=35.93 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=31.1
Q ss_pred CHHhHHHHHHHHhhcCC---hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 114 NATTYNLFFRVFYWSND---LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 114 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
+...+..+..++...++ .++|..++++..+.+ +-+......+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 355555555554442 223444444445555555555555555555544
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.012 Score=39.40 Aligned_cols=83 Identities=11% Similarity=-0.062 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 048616 25 QVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG---QPDKARDVLKEMKEYGCYP--DAAAYNAAIRNYCIAKRLRDA 99 (272)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 99 (272)
....+.+-|.+..+.+. ++..+...+..++++++ +.++++.+++++.+.. .| ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554 57777777777888877 5668888888888764 23 344555566677888888888
Q ss_pred HHHHHHHHHc
Q 048616 100 SGLMDEMVEK 109 (272)
Q Consensus 100 ~~~~~~~~~~ 109 (272)
.+.++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888876
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.037 Score=38.11 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 80 AAAYNAAIRNYCIAKRLRDASGLMDE 105 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (272)
...|..|.....+.|+++-|++.|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.054 Score=37.27 Aligned_cols=130 Identities=12% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRL 96 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (272)
.......|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 45567899999999998876 2688999999999999999999999998864 33455567778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 97 RDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
++..++-+.....|- ++.....+...|+++++.++|.+. |..|.. .......|..+.|.++...+
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 877766665555432 566666777889999999988653 222211 11122356677777777665
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.059 Score=40.36 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhc-CChh
Q 048616 62 DKARDVLKEMKEYGCYPD---AAAYNAAIRNYCIA-----KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWS-NDLR 132 (272)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 132 (272)
..|...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. ++.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 46667777777653 44 55788888888884 88999999999888875432466666777777774 8888
Q ss_pred hHHHHHHHHHhCCCC--CCHhhHH
Q 048616 133 SSWNLYCRMMGTGCL--PNTQSCM 154 (272)
Q Consensus 133 ~a~~~~~~~~~~~~~--~~~~~~~ 154 (272)
++.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888877555 5544333
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.77 E-value=0.052 Score=35.43 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=78.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHH
Q 048616 57 LVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWN 136 (272)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (272)
-.|..++..++..+.... .+..-+|.++--....-+=+-..++++.+-.. .|. ...++......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345556666666555543 23444444444444444444444444443321 121 12233333333
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 137 LYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
.+-.+ ..+...+...+..+..+|+.++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33222 2244456667777778888888888887764432 56666667777888888888888888888888776
Q ss_pred C
Q 048616 217 K 217 (272)
Q Consensus 217 ~ 217 (272)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.72 E-value=0.062 Score=35.74 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=53.9
Q ss_pred CHHhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCCHh-hHHHHHHH------HHhcCChhHHHHHHHHHHHcC
Q 048616 9 DIVSYNCLIDVYCKDRQV------EKAYKIVEKMRDEDISPDVI-SYTSIIGG------LGLVGQPDKARDVLKEMKEYG 75 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 75 (272)
|..+|=..+...-+.|+. ++..++|++.... ++|+.. .|..-+.. +...+|.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666766 6666666666553 444321 11111111 112356666666666665442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 76 CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (272)
+-=...|......-.+.|+++.|.+++.+.+..+.+
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222445555555555666666666666666665544
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.53 E-value=0.088 Score=35.05 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=48.3
Q ss_pred CHhhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHHcC
Q 048616 44 DVISYTSIIGGLGLVGQP------DKARDVLKEMKEYGCYPDAA-AYNAAIRN------YCIAKRLRDASGLMDEMVEKG 110 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 110 (272)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555566666666555666 6666677766654 344321 11111111 122355555555555554432
Q ss_pred CCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 048616 111 LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTG 145 (272)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (272)
-.- ...|......-.+.|+..+|.+++.+....+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 222 4444444444455555555555555555544
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.033 Score=47.71 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHc------CCCC-CH----
Q 048616 14 NCLIDVYCKDRQ-VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ-PDKARDVLKEMKEY------GCYP-DA---- 80 (272)
Q Consensus 14 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~---- 80 (272)
..++..+...|+ ++.|.++|+++.+.....+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 68899999999886432222222233333333332 22455555554321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHH
Q 048616 81 ------AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMM 142 (272)
Q Consensus 81 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (272)
.....-...+...|+++.|+++-++.....+. +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222234567789999999999999987432 67899999999999999999999998873
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.26 E-value=0.081 Score=39.64 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHH
Q 048616 132 RSSWNLYCRMMGTGCLPN---TQSCMFLVKLCKRQ-----EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDM-GKLV 202 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 202 (272)
..|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.+++. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5566777777665 344 45788888888884 99999999999999886433466777788888884 9999
Q ss_pred HHHHHHHHHHHcCCC--CcHHhHH
Q 048616 203 EAEKSFLEMIEKGHK--PSQVSFR 224 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~--p~~~~~~ 224 (272)
++.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999988665 6654444
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.16 E-value=0.28 Score=38.72 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=68.9
Q ss_pred CcCHHhHHHHHHHHH---hcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhHH-HHHHHHHHHcCCCCCH
Q 048616 7 KPDIVSYNCLIDVYC---KDRQVEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPDKA-RDVLKEMKEYGCYPDA 80 (272)
Q Consensus 7 ~p~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~ 80 (272)
.-|...|..++.... ..|+.+.|.+.+.+.... |....... ...|-.. ..-+++.. .
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~----------~~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVEDK-------V 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHHHH-------H
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC----------chhHHHHHHHHHHHHH-------H
Confidence 346666666665433 357888888888887653 32211100 0111111 11111111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG-----TGCLPNTQSCM 154 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (272)
.+...++..+...|+.++|...+..+....+ .+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 1233455556666777777666666665533 2556666677777777777777766665522 36666665543
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.11 E-value=0.12 Score=32.11 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKG------FGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
..+...+.+.++++.|...++...+.. -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334444444444444444444433220 1223445555556666666666666666665543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.01 E-value=0.16 Score=32.80 Aligned_cols=66 Identities=11% Similarity=-0.031 Sum_probs=32.8
Q ss_pred CCHhhHHHHHHHHHhcCcHHH---HHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 148 PNTQSCMFLVKLCKRQEKVEI---ALQLWNDMVEKGFGS--YILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
++..+-..+..++.+..+... ++.++.++.+.+ .| .....-.+.-++.+.|++++|.++++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444445555555554433 555555555443 12 1122223344555666666666666666654
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.66 E-value=0.24 Score=32.37 Aligned_cols=150 Identities=13% Similarity=0.040 Sum_probs=106.3
Q ss_pred HhHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 11 VSYNCLIDV--YCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 11 ~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
.+...||.+ ..-.|.+++..++..+..+.. +..-+|-+|--....-+-+-..++++.+-+. -|.
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi-------- 71 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL-------- 71 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------
Confidence 344556654 445799999999999888753 5556777777777666666666665555332 232
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHH
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEI 168 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (272)
..+|++......+-.+- .++..++..+..+...|..++..+++..+... -+|+......+..+|.+.|+..+
T Consensus 72 --s~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 72 --DKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp --GGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred --HhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhh
Confidence 23466655555554332 25666788888999999999999999886443 37788888889999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 048616 169 ALQLWNDMVEKGFG 182 (272)
Q Consensus 169 a~~~~~~~~~~~~~ 182 (272)
+.+++.+.-+.|++
T Consensus 144 a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 144 ATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhH
Confidence 99999999888854
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.56 E-value=1.1 Score=40.87 Aligned_cols=130 Identities=6% Similarity=-0.046 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHhCCCC--CC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048616 117 TYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL--PN--TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLF 192 (272)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (272)
-|..++..+.+.+.++.+.++-+...+.... ++ ...|..+.+.+...|++++|...+-.+.....+ ......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 3455555566666666655555444332111 11 113555566666666666666666555444322 23444455
Q ss_pred HHHHhcCCH------------HHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHHhhhHHH-HHHHHHHHHh
Q 048616 193 DLLCDMGKL------------VEAEKSFLEMIEK--GHKPSQVSFRRIKALMELANKQEA-LQNLSNKMAL 248 (272)
Q Consensus 193 ~~~~~~g~~------------~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 248 (272)
..++..|.. +++.+++..-.+. .+.....-|..|-..+...|++.+ |.-+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 544544433 3333333322111 011111234556666666666554 4445665543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.51 E-value=0.1 Score=41.22 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVE-----KGLSPNATTYNLF 121 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 121 (272)
+...++..+...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|++.|+++.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45667888889999999999999988763 55788999999999999999999999988753 4999988765433
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.42 E-value=0.29 Score=31.57 Aligned_cols=91 Identities=9% Similarity=-0.115 Sum_probs=65.6
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-cHHhHH-HHHHHHHH
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE---AEKSFLEMIEKGHKP-SQVSFR-RIKALMEL 232 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p-~~~~~~-~l~~~~~~ 232 (272)
..-.....+..+.+-|......|. ++..+--.+..++++..+... +..++++..+.+ .| ...-+. .+.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333344556666777776666563 666666678888999887776 888888887753 23 333333 47889999
Q ss_pred hhhHHHHHHHHHHHHhcC
Q 048616 233 ANKQEALQNLSNKMALFG 250 (272)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~ 250 (272)
.|++++|.++++.+.+..
T Consensus 87 lg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999999999866
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.42 Score=41.14 Aligned_cols=53 Identities=17% Similarity=-0.032 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 192 FDLLCDMGKLVEAEKSFLEMIEKGHKP-SQVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
.+.+...|+++-|+++.++.... .| +-.+|..|..+|...|+++.|.-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455667777777777776664 33 3556667777777777777777666654
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=1.2 Score=35.87 Aligned_cols=189 Identities=11% Similarity=0.107 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHH----HHh
Q 048616 23 DRQVEKAYKIVEKMRD-----EDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCYPDAAAYNAAIRN----YCI 92 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~ 92 (272)
.|+++.|++.+-.+.+ .+..-+......++..|...++++...+.+.-+... |..+ .....+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 3678888887766654 223335666788889999999999988887766643 3222 222233332 222
Q ss_pred cCCHHHHH--HHHHHHHH--cC-CCC---CHHhHHHHHHHHhhcCChhhHHHHHHHHHh--CCCCCC---HhhHHHHHHH
Q 048616 93 AKRLRDAS--GLMDEMVE--KG-LSP---NATTYNLFFRVFYWSNDLRSSWNLYCRMMG--TGCLPN---TQSCMFLVKL 159 (272)
Q Consensus 93 ~~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~ 159 (272)
....+... .+.+.+.. .| +.. .......|...+...|++.+|.+++..+.. .+.... ...+..-++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33322211 11111110 01 111 112335677888899999999999988743 222211 2456677788
Q ss_pred HHhcCcHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 160 CKRQEKVEIALQLWNDMVEK----GFGSY--ILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
|...+++..|..++..+... ...|+ ...+...+..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88999999999988886532 22222 23556677777788888888887776643
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.77 E-value=0.67 Score=28.42 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 26 VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
.=+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665554
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.24 E-value=0.84 Score=27.99 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 133 SSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
++.+-++.+...++.|+..+..+.+++|-+.+++..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555543
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.52 E-value=1.6 Score=29.64 Aligned_cols=69 Identities=7% Similarity=-0.119 Sum_probs=37.3
Q ss_pred CCCCcCHH--hHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCC-------HhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048616 4 MGVKPDIV--SYNCLIDVYCKDRQVEKAYKIVEKMRDED-ISPD-------VISYTSIIGGLGLVGQPDKARDVLKEMK 72 (272)
Q Consensus 4 ~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (272)
.|+.|.-. .+-.-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35555433 33344566677778888777777654321 1222 1244556667777788888888777754
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.50 E-value=0.39 Score=35.45 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=44.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 158 KLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
....+.|+++++++....-.+.. +.|...-..+++.+|-.|++++|.+=++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567888888888887777765 667777778888899999999998888888765
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.43 E-value=1.4 Score=28.61 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 47 SYTSIIGGLGLVGQ--PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 47 ~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
-|..--..|...-+ .=+..+-++.+....+.|++......+.+|-+.+|+..|.++|+-+..+- .+....|..+++-
T Consensus 53 eFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 53 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 34443444443333 33556666777777788888888888888888888888888888777552 2344557666654
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.17 E-value=2.8 Score=33.54 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh---CCCCCCHhh--H
Q 048616 81 AAYNAAIRNYCIAKRLRDASGLMDEMVEKG--LSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG---TGCLPNTQS--C 153 (272)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~ 153 (272)
.+...+...|.+.|+++.|.+.+.++.+.. ...-...+-..++.+...+++..+...+.+... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366788899999999999999999998752 233356677888999999999999999988743 332333221 1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
..-...+...+++..|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234678888888888776543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.90 E-value=1.7 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 136 NLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
+-++.+...++.|+..+..+.+++|-+.+++..|.++++-++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333444444555555555555555555555555554444
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.28 E-value=3.8 Score=32.81 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEY--GCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
+...+...|.+.|++++|.+.+.++... +...-...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555555532 111223344445555555555555555555443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.82 E-value=9.6 Score=34.89 Aligned_cols=189 Identities=10% Similarity=-0.051 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH--------------------
Q 048616 14 NCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE-------------------- 73 (272)
Q Consensus 14 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 73 (272)
..++..+.+.+.++-+.++...... +...--.+..++...|++++|.+.|++...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3466777788888888776655433 333334567788889999999999976410
Q ss_pred cC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCC
Q 048616 74 YG--CYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA----TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCL 147 (272)
Q Consensus 74 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (272)
.. ...-..-|..++..+-+.+.++.+.++-...++....-+. ..|..+...+...+++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00 1123456778888999999999999888777654322122 25778889999999999999999887665433
Q ss_pred CCHhhHHHHHHHHHhcCcH------------HHHHHHHHHHHH-c-CCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 148 PNTQSCMFLVKLCKRQEKV------------EIALQLWNDMVE-K-GFGSYILVSDVLFDLLCDMGKLVEAEKSFL 209 (272)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (272)
......++...+..|.. ++..+++....+ . .+...+.-|..|-..+..+|++..|..++-
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHH
Confidence 44566666666655544 444444433221 1 112222345666666777788776655543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.74 E-value=2.3 Score=27.61 Aligned_cols=66 Identities=5% Similarity=-0.059 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 048616 78 PDAAAYNAAIRNYCIAKR---LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (272)
|+..+--.+..++++..+ ..+++.+++++.+.+..-....+.-+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443334444444332 223444444444433111122233344445555555555555555444
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.23 E-value=6.2 Score=31.75 Aligned_cols=238 Identities=9% Similarity=0.039 Sum_probs=136.6
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHH----HhcCChhHHH--HHHHHHH---Hc
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKMRDE-DISPDVISYTSIIGGL----GLVGQPDKAR--DVLKEMK---EY 74 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~a~--~~~~~~~---~~ 74 (272)
...-+......++..|...|+++...+.+..+.+. |..+. ....+++.+ ......+... .+.+.+. +.
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ 128 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN 128 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34456777888999999999999998888776553 33222 223344332 2333333211 1111111 11
Q ss_pred CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHhHHHHHHHHhhcCChhhHHHHHHHHHh---
Q 048616 75 GCYP---DAAAYNAAIRNYCIAKRLRDASGLMDEMVEK--GLSPN---ATTYNLFFRVFYWSNDLRSSWNLYCRMMG--- 143 (272)
Q Consensus 75 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 143 (272)
.+-. .......|...+...|++.+|.+++.++... |.... ...+...++.|...+++.+|..++.+...
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 1111 2234467888899999999999999998743 22211 24566777889999999999999988632
Q ss_pred -CCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCCccHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 144 -TGCLPN--TQSCMFLVKLCKRQEKVEIALQLWNDMVEK-GFGSYIL-----VSDVLFDLLCDMGKLVEAEKSFLEMIEK 214 (272)
Q Consensus 144 -~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~ 214 (272)
....|+ ...+...+..+...+++.+|.+.|.++... ....+.. .+..++... -.+....-..++......
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i-La~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV-LSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HSSCSSTTHHHHHSHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHhhc
Confidence 222232 245677777888899999998888777543 1111221 122222222 222222222333333222
Q ss_pred CCCCcHHhHHHHHHHHHHh--hhHHHHHHHHHH
Q 048616 215 GHKPSQVSFRRIKALMELA--NKQEALQNLSNK 245 (272)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~ 245 (272)
..-++...|..++.+|... .+++.+.+.|+.
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2235667777788887654 235555555544
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.14 E-value=3.6 Score=28.90 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCCHhhHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 147 LPNTQSCMFLVKLCKR--QEKVEIALQLWNDMVEKGFGSY-ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.-|..-....+..... .++..+...+|..|..+|+... ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3344444433333322 4446677777777777765433 345667777777788888888888887777766643
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.05 E-value=2.1 Score=26.12 Aligned_cols=77 Identities=8% Similarity=-0.033 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 130 DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFL 209 (272)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (272)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.. ..||...|-++-. .+.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 2222222233445566666665544332 2455554444432 25555555555555
Q ss_pred HHHHc
Q 048616 210 EMIEK 214 (272)
Q Consensus 210 ~~~~~ 214 (272)
++..+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55444
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.80 E-value=2.3 Score=26.06 Aligned_cols=49 Identities=14% Similarity=-0.014 Sum_probs=21.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 159 LCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
.+...|++++|..+.+.. ..||...|-++-. .+.|.-+++...+.++..
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344555555554444322 1444444433332 244544444444444433
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.67 E-value=0.00015 Score=57.99 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
.+|..|..+..+.+++.+|++-| .+. -|+..|..++....+.|.+++-++.+...++.. .++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 45666666666666666665544 221 145556777777777777777777766655442 2334445667777
Q ss_pred HhcCCHHHHH
Q 048616 91 CIAKRLRDAS 100 (272)
Q Consensus 91 ~~~~~~~~a~ 100 (272)
++.+++.+.+
T Consensus 127 Ak~~rL~elE 136 (624)
T 3lvg_A 127 AKTNRLAELE 136 (624)
T ss_dssp HTSCSSSTTT
T ss_pred HhhCcHHHHH
Confidence 7776655433
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.21 E-value=1.8 Score=31.87 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHH
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVI---SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRN 89 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 89 (272)
+.+...++.|+.+.+..+++ .|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 45556677888876665554 34333221 1123444555667654 4444455565443211 1122333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHh-------------hH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQ-------------SC 153 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~ 153 (272)
.+..|+.+ +++.+.+.|..++. ..++ .+...+..|+.+-+ +.+.+.|..++.. -.
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCC
Confidence 44556654 44445555554432 1122 23344455665433 3334444333321 11
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--HHHH
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSY---ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR--RIKA 228 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~ 228 (272)
..+...+..|+.+-+..+++. .|..++ ..-.+.+ ...+..++.....++++.+.+.|..++..... +.+.
T Consensus 150 -t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 -TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp -CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred -cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 233344456776655544432 132222 1111222 23345555555566666777777665543221 2334
Q ss_pred HHHHhhhHHHHHHHHH
Q 048616 229 LMELANKQEALQNLSN 244 (272)
Q Consensus 229 ~~~~~~~~~~a~~~~~ 244 (272)
.....|..+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4445566554444443
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.89 E-value=2.7 Score=25.69 Aligned_cols=88 Identities=15% Similarity=-0.024 Sum_probs=62.5
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 164 EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
-..++|..+-+.+...+. ....--+=+..+.+.|++++|..+.+.. ..||...|.++ +-.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 367888888888877763 3333333445678999999999887665 48999888766 445678888888888
Q ss_pred HHHHhcCCCCCCCHHHHHH
Q 048616 244 NKMALFGPSMIPKREEYLA 262 (272)
Q Consensus 244 ~~~~~~~~~~~p~~~~~~~ 262 (272)
.++...| .|....|..
T Consensus 92 ~~la~sg---~p~~q~Fa~ 107 (115)
T 2uwj_G 92 AGLGGSS---DPALADFAA 107 (115)
T ss_dssp HHHHTCS---SHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHH
Confidence 7777655 466655543
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.64 E-value=7.7 Score=30.63 Aligned_cols=164 Identities=9% Similarity=0.025 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC---CCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHH--
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDE-DIS---PDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAY-- 83 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 83 (272)
.....|...|.+.|+.++..+++.....- +.- -.......++..+.... ..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556777788888888888888766431 001 12334566677666543 33444444444443210 111222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHhhcCChhhHHHHHHHHHhC--CCCCCHhh
Q 048616 84 ----NAAIRNYCIAKRLRDASGLMDEMVEKGLSPN-----ATTYNLFFRVFYWSNDLRSSWNLYCRMMGT--GCLPNTQS 152 (272)
Q Consensus 84 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 152 (272)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567777888888888888777775411111 123444556677777888877777766332 12122222
Q ss_pred HHHHHH-----HHH-hcCcHHHHHHHHHHH
Q 048616 153 CMFLVK-----LCK-RQEKVEIALQLWNDM 176 (272)
Q Consensus 153 ~~~l~~-----~~~-~~~~~~~a~~~~~~~ 176 (272)
. ..+. .+. ..+++..|...|-+.
T Consensus 179 ~-a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 Q-GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp H-HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred H-HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 1111 233 567777777766553
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.54 E-value=2.9 Score=25.61 Aligned_cols=88 Identities=16% Similarity=0.042 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHH
Q 048616 164 EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLS 243 (272)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (272)
-..++|..+-+.+...+. ....--+=+..+.+.|++++|..+.+.. ..||...|.++. -.+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 367888888888877763 3333233445678999999999988765 489998887763 45677788888878
Q ss_pred HHHHhcCCCCCCCHHHHHH
Q 048616 244 NKMALFGPSMIPKREEYLA 262 (272)
Q Consensus 244 ~~~~~~~~~~~p~~~~~~~ 262 (272)
.++...| .|....|..
T Consensus 93 ~~la~sg---~p~~q~Fa~ 108 (116)
T 2p58_C 93 NRLARSQ---DPRIQTFVN 108 (116)
T ss_dssp HHHTTCC---CHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHH
Confidence 7776555 466655543
No 260
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=87.25 E-value=4.2 Score=29.01 Aligned_cols=26 Identities=4% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDIS 42 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~ 42 (272)
+...++.|+.+.+..+++.+.+.+..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445667777776666655554443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.01 E-value=5.3 Score=25.95 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=49.5
Q ss_pred CCCCHhhHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 048616 146 CLPNTQSCMFLVKLCKRQE---KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222 (272)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (272)
-.|+..+--.+..++.+.. +..+++.++.++.+.+..-.....--+.-++.+.|++++|.++.+.+.+. .|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHH
Confidence 3556666555666666655 34567778877776653223344445566777888888888888888775 565544
Q ss_pred HHHH
Q 048616 223 FRRI 226 (272)
Q Consensus 223 ~~~l 226 (272)
...|
T Consensus 114 A~~L 117 (134)
T 3o48_A 114 VGAL 117 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.80 E-value=5.7 Score=26.16 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=50.0
Q ss_pred CCCHhhHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 048616 147 LPNTQSCMFLVKLCKRQE---KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSF 223 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 223 (272)
.|+..+--.+..++.++. +..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++. .|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 466666666666676665 44567778888777543223333344566788889999999988888875 6655433
Q ss_pred H
Q 048616 224 R 224 (272)
Q Consensus 224 ~ 224 (272)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.21 E-value=6.2 Score=26.01 Aligned_cols=21 Identities=5% Similarity=-0.089 Sum_probs=9.1
Q ss_pred HHHhhcCChhhHHHHHHHHHh
Q 048616 123 RVFYWSNDLRSSWNLYCRMMG 143 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~ 143 (272)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444433
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.16 E-value=6.9 Score=26.54 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=67.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEYG-CYPDA-------AAYNAAIRNYCIAKRLRDASGLMDEMVEK--GLSPN 114 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 114 (272)
..++..-++.+...+.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++.++. .+.-+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556777888888998888877765321 12331 35566778888899999999999887543 11111
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 115 ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
..+...+ .. ...... .....++...---+..++.+.+++++|+.+++.+...
T Consensus 100 ~s~~~~~-~~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 100 SKVRPST-GN---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCccccc-cc---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111111 00 000000 0111223344444667778888888888888776544
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.97 E-value=13 Score=29.41 Aligned_cols=58 Identities=10% Similarity=-0.074 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048616 50 SIIGGLGLVGQPDKARDVLKEMKEYGCYPD-----AAAYNAAIRNYCIAKRLRDASGLMDEMV 107 (272)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (272)
.++..|...|++.+|..++.++.+.=-..| ..++-.-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355566666666666666666654211111 1234444455666666666666665554
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.40 E-value=0.014 Score=47.06 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=55.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
|+..|..+|....+.|.+++-.+.+...++.. + ++..=+.|+-+|++.++..+-.+++. .|+..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k-e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R-ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C-STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c-ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 56678889999999999999999886666542 2 44455678999999888765433321 233333344444
Q ss_pred HHHhcCCHHHHHHHHH
Q 048616 89 NYCIAKRLRDASGLMD 104 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~ 104 (272)
-|...|.++.|.-+|.
T Consensus 153 rcf~e~lYeAAKilys 168 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHSCCSTTSSTTGG
T ss_pred HHHHccCHHHHHHHHH
Confidence 4555555555444443
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.93 E-value=8.3 Score=25.72 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 169 ALQLWNDMVEKGFGSY-ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
...+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5566666666654322 34455566666666777777777766666655553
No 268
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=81.67 E-value=13 Score=26.97 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDE--DISP----DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRN 89 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (272)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355666777777777777765431 1221 111222223333333333333344444422 3445555555666
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048616 90 YCIAKRLRDASGLMDEM 106 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~ 106 (272)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66677777776666444
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.40 E-value=16 Score=28.04 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHhHHHHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL----MDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 122 (272)
+|.++..=|.+.+++++|++++..-. ..+.+.|+...|-++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555566666777777776654332 224444555444433 35555667778887777777
Q ss_pred HHHhhcCChh-hHHHHHHHH----HhCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 123 RVFYWSNDLR-SSWNLYCRM----MGTG--CLPNTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 123 ~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
..+.....-+ .-.++++++ .+.| ..-|......+...|.+.+++.+|+..|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7776654321 112222222 1111 2234455556666777777777776665
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=80.83 E-value=11 Score=26.71 Aligned_cols=180 Identities=11% Similarity=-0.011 Sum_probs=88.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHh
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATT--YNLFFRVFY 126 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 126 (272)
.+...++.|+.+.+..+++.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455677898888888887777665544321 112344455667754 4455555665443221 112344455
Q ss_pred hcCChhhHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCC
Q 048616 127 WSNDLRSSWNLYCRMMGTGCLP---NTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL---VSDVLFDLLCDMGK 200 (272)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 200 (272)
..|+.+-+..+++.....+..+ +..-.+. +...+..|+.+-+..++ +.|..++.. .-...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHH----HcCCCcccccccCCCcHHHHHHHcCC
Confidence 6777766666655433111111 2222222 33344566665544444 444333221 11223444556777
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHHHHH
Q 048616 201 LVEAEKSFLEMIEKGHKPSQVSFR--RIKALMELANKQEALQNLS 243 (272)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~ 243 (272)
.+-+. .+.+.|..++..... +.+......|..+-+..++
T Consensus 163 ~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 163 LSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp HHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66444 444556665443221 2333444556655444333
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.24 E-value=16 Score=27.11 Aligned_cols=118 Identities=7% Similarity=-0.002 Sum_probs=79.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcC
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGF--GSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 199 (272)
+....+.|++++++.....-++.. +.|...-..++..+|-.|+++.|.+-++...+... .+...+|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999999998887774 66788888899999999999999999988877642 2233345555543
Q ss_pred CHHHHHHHHHHHHHcCCCC----cHHhHH-HHHHHHH--HhhhHHHHHHHHHHHHhcC
Q 048616 200 KLVEAEKSFLEMIEKGHKP----SQVSFR-RIKALME--LANKQEALQNLSNKMALFG 250 (272)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p----~~~~~~-~l~~~~~--~~~~~~~a~~~~~~~~~~~ 250 (272)
+..=.+....+-.| ....|. .++.+.. ..|+.++|.++-.+..+..
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 22222222222222 112244 3666554 4689999999988887654
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.66 E-value=34 Score=30.62 Aligned_cols=226 Identities=7% Similarity=-0.061 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-------CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHH--
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDI-------SPDVISYTSIIGGLGLVGQ-PDKARDVLKEMKEYGCYPDAAAYN-- 84 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~-- 84 (272)
.+.-+....|..+++..++.......- .+....-..+.-+.+-.|. -+++.+.+..+....- +......
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 333445556665667776666554311 0111111222222332332 2456666666665321 1111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhH--HHHHHHH
Q 048616 85 AAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYN--LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSC--MFLVKLC 160 (272)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 160 (272)
.+...+.-.|+-+....++..+.+.. +..... .+.-++...|+.+.+..+++.+.... .|....- .++..+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 23333456677777777777666541 222222 33344557888888888888887642 3333222 2334567
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhh-HHHH
Q 048616 161 KRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANK-QEAL 239 (272)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a 239 (272)
+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+++..+.+.+ .|...--..+..+....|. ..++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 78889888777888877652 3343333333344555677776777776655442 4444433334444443333 2456
Q ss_pred HHHHHHHH
Q 048616 240 QNLSNKMA 247 (272)
Q Consensus 240 ~~~~~~~~ 247 (272)
...+..+.
T Consensus 649 id~L~~L~ 656 (963)
T 4ady_A 649 IDVLDPLT 656 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666664
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.29 E-value=25 Score=28.90 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 45 VISYTSIIGGLGLVGQPDKARDVLKEMKEY-GCYPDA--AAY-NAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
...++.+++.|...+.++.|..+..+..-- ...++. ..| .-+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345777788888888888888888877410 001111 122 23345566678888888887777654
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.04 E-value=22 Score=27.61 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 048616 152 SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK--LVEAEKSFLEMIEKGHKPSQVSFRRIKAL 229 (272)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 229 (272)
....++.=|...++.++|.+.++++....+ ....+...+..++-+.++ .+.+.+++..+...|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 467788888889999999999998864321 223445556666655443 45688888888888776555444445555
Q ss_pred HHHhh
Q 048616 230 MELAN 234 (272)
Q Consensus 230 ~~~~~ 234 (272)
+....
T Consensus 298 l~~ld 302 (358)
T 3eiq_C 298 YNEIP 302 (358)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 44433
No 275
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=77.71 E-value=1.6 Score=31.84 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-------hHHHHHHHHH--hcCChhHHHHHHHHH
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVI-------SYTSIIGGLG--LVGQPDKARDVLKEM 71 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (272)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556788887777777666655544422 2233443332 456666666666554
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=76.84 E-value=22 Score=26.94 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGK--LVEAEKSFLEMIEKGHKPSQVSFRRIKALM 230 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (272)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 557777888889999999999888633211 23444555555555433 456778888888777655444433344444
Q ss_pred HHh
Q 048616 231 ELA 233 (272)
Q Consensus 231 ~~~ 233 (272)
...
T Consensus 248 ~~l 250 (307)
T 2zu6_B 248 NEI 250 (307)
T ss_dssp HHH
T ss_pred Hhc
Confidence 433
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.90 E-value=16 Score=24.35 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ--PDKARDVLKEMKEYGCY 77 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 77 (272)
..+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888899999999999887532111 12233334444444322 34566777777766543
No 278
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=73.74 E-value=16 Score=27.97 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=103.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDV---ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNA 85 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (272)
|..-++.|. ..+..|+.+.+..+++ .|..++. .-++ .+...+..|+.+-+ +.+.+.|..++...-..
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLIE----TGVSPTIQNRFGCT-ALHLACKFGCVDTA----KYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHHH----TTCCTTCCCTTCCC-HHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBC
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHH----cCCCccccCCCCCc-HHHHHHHcCCHHHH----HHHHHCCCCccccCCCC
Confidence 444455444 4556788876666654 3443332 2223 34445556766544 44444454444322223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--------------------HhHHHHHHHHhhcC--ChhhHHHHHHHHHh
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEKGLSPNA--------------------TTYNLFFRVFYWSN--DLRSSWNLYCRMMG 143 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 143 (272)
.+...+..|+.+-+..+++.....|..++. .-.+ .+...+..| +.+-+..+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~---- 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQ---- 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHH----
Confidence 444556678888777777765554544332 1122 333444555 4444443333
Q ss_pred CCCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHHHHHc-C--C-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048616 144 TGCLPNT---QSCMFLVKLCKRQEKVEIALQLWNDMVEK-G--F-GSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGH 216 (272)
Q Consensus 144 ~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 216 (272)
.|..++. .-.+. +...+..|+.+-+..+++.-... + + ..+..-.+ .+...+..|+.+-+ +.+++.|.
T Consensus 162 ~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~ga 235 (364)
T 3ljn_A 162 LGASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVA----MRFVEMGI 235 (364)
T ss_dssp HTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHH----HHHHTTTC
T ss_pred cCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHH----HHHHHcCC
Confidence 3433332 22333 34445678877666665542210 0 0 01111112 23334567776543 34445666
Q ss_pred CCcHHhHH--HHHHHHHHhhhHHHHHHHHHH
Q 048616 217 KPSQVSFR--RIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 217 ~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 245 (272)
.++..... +-+......|..+-+..+++.
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 65543221 234444556777666666654
No 279
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=73.14 E-value=17 Score=23.89 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 105 EMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444566554432 33444444444 5566677766666655555555555555555544
No 280
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=72.28 E-value=18 Score=23.90 Aligned_cols=59 Identities=3% Similarity=0.019 Sum_probs=28.6
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 36 MRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455554332 233444444444555666666666655544455554444555554443
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.11 E-value=11 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCCCcHH
Q 048616 205 EKSFLEMIEKGHKPSQV 221 (272)
Q Consensus 205 ~~~~~~~~~~~~~p~~~ 221 (272)
.++.+.+.+.|..|+..
T Consensus 158 ~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 158 QDIVKLLMENGADQSIK 174 (201)
T ss_dssp HHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHCCCCCCcc
Confidence 45555566666665543
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=72.03 E-value=18 Score=25.35 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhc
Q 048616 17 IDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA---AAYNAAIRNYCIA 93 (272)
Q Consensus 17 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 93 (272)
+...++.|+.+....+++.-...-..++..-++. +...+..|+.+-+ +.+.+.|..++. .-++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 5667788999988888876432111123322333 3344556665444 444455544432 1222 23334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCcHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS--CMFLVKLCKRQEKVEI 168 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 168 (272)
|+.+ +++.+.+.|..++. ... ..+...+..++.+-+..+ .+.|..++... -...+...+..|+.+-
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 6654 44455555544332 112 233444555665544433 34444433221 1122334445667665
Q ss_pred HHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 169 ALQLWNDMVEKGFGSYIL--VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
+..++ +.|..++.. .-...+...+..|+.+- .+.+.+.|..|+.
T Consensus 155 v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 155 VHILL----FYKASTNIQDTEGNTPLHLACDEERVEE----AKFLVTQGASIYI 200 (231)
T ss_dssp HHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCSCC
T ss_pred HHHHH----hcCCCccccCCCCCCHHHHHHHCCCHHH----HHHHHHCCCCCCC
Confidence 54444 344333211 11122334456677553 3344455665543
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.86 E-value=21 Score=25.12 Aligned_cols=206 Identities=9% Similarity=0.030 Sum_probs=93.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHh
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVI--SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA---YNAAIRNYCI 92 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 92 (272)
...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+-+. .+.+.|..++... -...+...+.
T Consensus 14 ~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 14 VKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp HHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred HHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHH
Confidence 34567888776666554 34333221 1123455566677765444 4444443332111 1123444555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCcH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT---QSCMFLVKLCKRQEKV 166 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 166 (272)
.|+.+ +++.+.+.|..++. ... ..+...+..|+.+-+ +.+.+.|..++. .-.+.+..++.+.+.
T Consensus 86 ~~~~~----~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~- 155 (240)
T 3eu9_A 86 QGHLS----MVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIV----AYLIAKGQDVDMMDQNGMTPLMWAAYRTHS- 155 (240)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHCCS-
T ss_pred cCCHH----HHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHH----HHHHhcCCCccccCCCCCcHHHHHHHhCCh-
Confidence 67755 44444555554432 222 234444556665544 334444443332 223344444433332
Q ss_pred HHHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHHH
Q 048616 167 EIALQLWNDMVEKGFGSYIL---VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR--RIKALMELANKQEALQN 241 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 241 (272)
....++ +.+.+..++.. .-...+...+..|+.+-+..++ +.|..|+..... +-+......|+.+-+..
T Consensus 156 ~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 156 VDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINH 228 (240)
T ss_dssp STTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 223333 33333332211 1112344556778876444443 445555543222 24555566777776666
Q ss_pred HHHHHHh
Q 048616 242 LSNKMAL 248 (272)
Q Consensus 242 ~~~~~~~ 248 (272)
+.+.-.+
T Consensus 229 L~~~~~~ 235 (240)
T 3eu9_A 229 LQEARQA 235 (240)
T ss_dssp HHHHC--
T ss_pred HHHhhhc
Confidence 6655433
No 284
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=71.01 E-value=4.5 Score=29.35 Aligned_cols=189 Identities=13% Similarity=0.007 Sum_probs=91.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHHHcC---------CC-
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAA-------YNAAIRNYC--IAKRLRDASGLMDEMVEKG---------LS- 112 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 112 (272)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4455678999998888888887776655332 233433332 5677777776666543311 11
Q ss_pred CCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh----------------HHHHHHHHHhcCcHHHHHHHHHHH
Q 048616 113 PNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS----------------CMFLVKLCKRQEKVEIALQLWNDM 176 (272)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~ 176 (272)
.+..-++ .+...+..|+.+-+.-+ .+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELL----VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHH----HhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 0111122 33444556776544444 34454444322 122344445677766554444310
Q ss_pred HHcCCCcc---HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCC----------cHHhHHHHHHHHHHhhhHHH
Q 048616 177 VEKGFGSY---ILVSDVLFDLLCDMGK-----LVEAEKSFLEMIEKGHKP----------SQVSFRRIKALMELANKQEA 238 (272)
Q Consensus 177 ~~~~~~~~---~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~ 238 (272)
..|..++ ..-.+.|..+. ..|+ .+...++++.+.+.|..+ |..-.+ -+......|..+-
T Consensus 164 -~~ga~~~~~d~~g~TpLh~A~-~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~~ 240 (260)
T 3jxi_A 164 -HKQADLRRQDSRGNTVLHALV-AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIGI 240 (260)
T ss_dssp -SCCCCTTCCCTTSCCHHHHHH-HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHHH
T ss_pred -ccCCCCcccCCCCCcHHHHHH-HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHHH
Confidence 0333332 22223343333 2232 222234445555544332 222222 3444556777777
Q ss_pred HHHHHHHHHh
Q 048616 239 LQNLSNKMAL 248 (272)
Q Consensus 239 a~~~~~~~~~ 248 (272)
+..++++-..
T Consensus 241 v~~Ll~~g~~ 250 (260)
T 3jxi_A 241 FQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCCC
Confidence 7777766443
No 285
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=70.75 E-value=19 Score=23.33 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 36 MRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 445565555432 33444444444 455666666666666555555555555555555443
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=70.41 E-value=19 Score=23.59 Aligned_cols=59 Identities=7% Similarity=0.051 Sum_probs=29.5
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 35 KMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3444555554432 23344444444 45566666666655544555554444555554443
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.37 E-value=15 Score=27.19 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHHhcCcHHHHHHHHHH
Q 048616 156 LVKLCKRQEKVEIALQLWND 175 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~ 175 (272)
.+...+..|+.+-+..+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444566776666655554
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=70.35 E-value=20 Score=23.52 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=33.8
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 105 EMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3445666654442 3444555555556667777777766655556666555566665555
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.30 E-value=33 Score=26.05 Aligned_cols=112 Identities=8% Similarity=-0.011 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHhHHHHH
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASG----LMDEMVEKGLSPNATTYNLFF 122 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 122 (272)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...|-+ +++-+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444444555555555555443322 22344455544444 344444556777776666666
Q ss_pred HHHhhcCChh-hHHHHHHHH----HhCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 048616 123 RVFYWSNDLR-SSWNLYCRM----MGTG--CLPNTQSCMFLVKLCKRQEKVEIALQLW 173 (272)
Q Consensus 123 ~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (272)
..+.....-+ .-.++++++ .+.| ..-+......+...|.+.+++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655532111 112222222 1121 1124455555666666666666665544
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.05 E-value=26 Score=24.66 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCC
Q 048616 198 MGKLVEAEKSFLEMIEKGHKPSQV-SFRRIKALMELANKQEALQNLSNKMALFGPSMIPK 256 (272)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~ 256 (272)
.+...++.++|..|...|+--... -|...+..+...|++.+|.++|+.-++.+ -.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccH
Confidence 455779999999999988754444 45568999999999999999999988877 4464
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=69.93 E-value=19 Score=23.24 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=31.5
Q ss_pred HHHcCCCCCHHhHHHHHHHHhhcC-ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 106 MVEKGLSPNATTYNLFFRVFYWSN-DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 445566554442 33444554444 55667777777766655555555555555555544
No 292
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=69.57 E-value=21 Score=23.56 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 106 MVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455553332 33444555555555666666666655554455555555555555544
No 293
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=69.27 E-value=22 Score=23.53 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=30.7
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 36 MRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 445555554432 33444444444 455566666666665555555555555555555544
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=69.22 E-value=22 Score=23.52 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhhcC-ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 105 EMVEKGLSPNATTYNLFFRVFYWSN-DLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445566655443 33444554444 55667777777766655556666555666665555
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.03 E-value=24 Score=23.89 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHh
Q 048616 77 YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQ 151 (272)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (272)
.-|+.-....+..--.+ +.+..+|..|...|+-.. +..|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34555544444322222 447778888888765433 4556677777888899999999998888877676653
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=68.90 E-value=22 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=30.5
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048616 36 MRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (272)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44555554443 233444444445555666666666655544555555445555554443
No 297
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=68.85 E-value=3.5 Score=22.37 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 048616 27 EKAYKIVEKMRDEDISPDVISYTSIIGGL 55 (272)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 55 (272)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543334555677766666
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.22 E-value=9.7 Score=26.88 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 048616 55 LGLVGQPDKARDVLKEMKEYGCYPDAA--AYNAAIRNYCIAKRLRDAS 100 (272)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 100 (272)
.++.|+.+....++ +.|..++.. .-...+...+..|+.+-+.
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVK 59 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHH
Confidence 44566655444433 344333221 1112344555667654433
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.85 E-value=55 Score=27.67 Aligned_cols=115 Identities=4% Similarity=-0.018 Sum_probs=65.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhhH----HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048616 130 DLRSSWNLYCRMMGTGCLPNTQSC----MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAE 205 (272)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (272)
+.+.|...+....... ..+.... ..+.......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6678888887775432 2232222 222223333442345555555544332 23333444555556789999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 048616 206 KSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMAL 248 (272)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (272)
+.|..|...... .....--+.++....|+.+++..+|+++..
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999888543111 122222367788888999999999988753
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=65.29 E-value=54 Score=26.60 Aligned_cols=142 Identities=8% Similarity=-0.014 Sum_probs=96.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048616 23 DRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGL 102 (272)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (272)
..+.+-|.++- .+.|++--...|..-.+.+...|++++|-++--...+ |+-.+..|.+.+-.+-...|+..-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 36677666654 3456666667788888889999999999888766653 5667888887777766677888888899
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048616 103 MDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (272)
|..+.+.|- .+..---.+++.-...|+.+-..+++. +..+..+...=..+ +..+..-|..+|.+..
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 998888874 354444456666667777666666554 34455555443332 3446677777776653
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.18 E-value=36 Score=24.58 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048616 86 AIRNYCIAKRLRDASGLMDEMVEK--GLSP----NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKL 159 (272)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (272)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466777778888888877766532 2221 111112222222222222233333444422 3344445555566
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 048616 160 CKRQEKVEIALQLWNDMV 177 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~ 177 (272)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666777777776665543
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=64.96 E-value=29 Score=23.33 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcC
Q 048616 106 MVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT--GCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 164 (272)
+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33456665443 344556666666666777777777665 55556666655666666655
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.66 E-value=36 Score=24.36 Aligned_cols=53 Identities=11% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048616 167 EIALQLWNDMVEKGFGSY-ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPS 219 (272)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (272)
+....+|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 356678888877766433 45667777778888888888888888888777774
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.59 E-value=46 Score=25.58 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHhHHHHHH
Q 048616 55 LGLVGQPDKARDV----LKEMKEYGCYPDAAAYNAAIRNYCIAKRLR-DASGLMDEMVE----KG--LSPNATTYNLFFR 123 (272)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 123 (272)
+.+.|+...|-++ ++-+.+.++++|......++..+.....-+ .-..+.++++. .| ..-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 4455665544444 455566778888888888888776655422 12334444432 22 3346677777888
Q ss_pred HHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 048616 124 VFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVE 203 (272)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 203 (272)
.|.+.+++.+|...|- .|..++...+..++.-+...+.. ...+...-.+++ -|.-.+++..
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~--------------~e~dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDES--------------HTAPLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCG--------------GGHHHHHHHHHH-HHHHTTCHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHH-HHHHhCCHHH
Confidence 8999999988888772 23333445565554443333321 122222323333 3556778888
Q ss_pred HHHHHHHHHH
Q 048616 204 AEKSFLEMIE 213 (272)
Q Consensus 204 a~~~~~~~~~ 213 (272)
|..+++...+
T Consensus 206 A~~~~~~f~~ 215 (336)
T 3lpz_A 206 ANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.04 E-value=20 Score=24.41 Aligned_cols=81 Identities=10% Similarity=-0.006 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCC
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRNYCIAKR 95 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 95 (272)
...+..|+.+....++..-...--..+..-++. +...++.|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 344567888877777653221100112222333 33344566654 4444455555443221 1122334455677
Q ss_pred HHHHHHHH
Q 048616 96 LRDASGLM 103 (272)
Q Consensus 96 ~~~a~~~~ 103 (272)
.+-+..++
T Consensus 85 ~~~~~~Ll 92 (201)
T 3hra_A 85 TEILAYML 92 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544444
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=63.84 E-value=29 Score=25.62 Aligned_cols=145 Identities=6% Similarity=-0.112 Sum_probs=70.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhhc
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYWS 128 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 128 (272)
+...+..|+.+-+..++ +.|..++...-...+...+..|+.+-+ +.+.+.|..++. .-++ .+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 44445567766554444 444433322122344455566775544 444455554432 2222 33444566
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048616 129 NDLRSSWNLYCRMMGTGCLPNTQS---CMFLVKLCKRQEKVEIALQLWNDMVEKGFGS-YILVSDVLFDLLCDMGKLVEA 204 (272)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 204 (272)
|+.+-+.-+++. |..++... +...+...+..|+.+-+..+ .+.|..+ +...-...+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHH
Confidence 766555444443 44333322 12344555567776654444 3444322 111223445555678888877
Q ss_pred HHHHHHHHH
Q 048616 205 EKSFLEMIE 213 (272)
Q Consensus 205 ~~~~~~~~~ 213 (272)
.-+++.-..
T Consensus 178 ~~Ll~~gad 186 (285)
T 3kea_A 178 ILLLDYMTS 186 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHcCCC
Confidence 766665443
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=63.61 E-value=46 Score=25.58 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLV-GQPDKARDVLKEMKEYGCYP 78 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 78 (272)
....++.-|...|+.++|.+.++++...... ...+...+..++-+. ...+.+..++..+.+.|+-+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 3567888999999999999999887532111 111222222222221 12355666777777666543
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.60 E-value=31 Score=23.19 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=29.1
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 048616 37 RDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEY--GCYPDAAAYNAAIRNYCIAKR 95 (272)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 95 (272)
.+.|++++.. -..++..+...++.-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345554442 233445555555555666666666555 444454444444455555443
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.77 E-value=17 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=19.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444445555555554444444444444444444433
No 310
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=62.31 E-value=40 Score=24.06 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=6.6
Q ss_pred HHHHHHHHHHcCCC
Q 048616 99 ASGLMDEMVEKGLS 112 (272)
Q Consensus 99 a~~~~~~~~~~~~~ 112 (272)
...+++.+.+.|.-
T Consensus 95 i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 95 VEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 34444445555444
No 311
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=61.98 E-value=14 Score=26.67 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.2
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 048616 227 KALMELANKQEALQNLSNK 245 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~ 245 (272)
+......|..+-+..+++.
T Consensus 225 L~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhC
Confidence 3344555666655555554
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=61.21 E-value=18 Score=23.57 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE 164 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (272)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555556667777776666655556666555556555555
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.01 E-value=35 Score=22.99 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 048616 59 GQPDKARDVLKEMKEYGCYP--DAAAYNAAIR-N-----YCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 108 (272)
|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665443333 3344444444 2 1345666666666665543
No 314
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.50 E-value=45 Score=24.06 Aligned_cols=211 Identities=9% Similarity=-0.000 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDV---ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAA---AYNAAIRN 89 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~ 89 (272)
.+...+..|+.+-+.. +.+.|..++. ...+ .+...+..|+.+ +++.+.+.|..++.. -++ .+..
T Consensus 42 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~ 111 (285)
T 1wdy_A 42 PLHNAVQMSREDIVEL----LLRHGADPVLRKKNGAT-PFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFME 111 (285)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCCcccCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHH
Confidence 4455566777754444 4444544432 2222 333444556654 444555556544321 122 3334
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHh------------HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCC---HhhHH
Q 048616 90 YCIAKRLRDASGLMDEMVEKGLSPNATT------------YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPN---TQSCM 154 (272)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 154 (272)
.+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.. |..++ ..-.+
T Consensus 112 A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t 184 (285)
T 1wdy_A 112 AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRN 184 (285)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCC
T ss_pred HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCC
Confidence 45567654 4445555554443210 112344445566665554444321 33322 22223
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--HHHHHH
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL--VSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR--RIKALM 230 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~ 230 (272)
.+.. .+..++.....++.+.+.+.|..++.. .-...+...++.|+.+-+..+++. .|..++..... +-+...
T Consensus 185 ~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A 260 (285)
T 1wdy_A 185 ALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA 260 (285)
T ss_dssp HHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHH
T ss_pred HHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHH
Confidence 3333 334555444456666666676544421 112234445667877655444431 44444432211 233344
Q ss_pred HHhhhHHHHHHHHHHHHhcCC
Q 048616 231 ELANKQEALQNLSNKMALFGP 251 (272)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~ 251 (272)
...|..+-+ +.+.+.|.
T Consensus 261 ~~~~~~~i~----~~Ll~~Ga 277 (285)
T 1wdy_A 261 VELKLKKIA----ELLCKRGA 277 (285)
T ss_dssp HHTTCHHHH----HHHHHHSS
T ss_pred HHcCcHHHH----HHHHHcCC
Confidence 445655433 34444463
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.07 E-value=72 Score=26.30 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=47.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHh--hH-HHHHHHHHhcCChhHHHHHHHHHHHc
Q 048616 9 DIVSYNCLIDVYCKDRQVEKAYKIVEKMRDEDI-SPDVI--SY-TSIIGGLGLVGQPDKARDVLKEMKEY 74 (272)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (272)
-+..+|.+++.|...+.++.|..+..+..-... .++.. .| -.+.+.+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457899999999999999999999998752110 11111 11 12345666789999999999888764
No 316
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=59.75 E-value=39 Score=23.64 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc---------HHhHHHHHHHHHHhhhHHHHHHHHHHH
Q 048616 191 LFDLLCDMGKLVEAEKSFLEMIEKGHKPS---------QVSFRRIKALMELANKQEALQNLSNKM 246 (272)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (272)
-+...+..|+.+-+..+++.+.+.|..++ ..-.+ -+......|..+-+..+++.=
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 34455677888888777788887776442 22222 344455567776666666553
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.38 E-value=38 Score=22.83 Aligned_cols=48 Identities=4% Similarity=-0.023 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHhHHHHHH-H-----HhhcCChhhHHHHHHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSP--NATTYNLFFR-V-----FYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~ 141 (272)
|++-+|.++++.+-.....+ ....|..||. . ..+.|+...|..++.+.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666666665543333 3344444444 1 12355555565555554
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.23 E-value=38 Score=22.88 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 048616 147 LPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY-ILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVS 222 (272)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (272)
.-|..-....+...-..++ ...+|..|..+|+-.. ...|......+...|++.+|.++|..-++.+-.|-...
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3444444444433323333 5567777777765433 34566777777788888888888888888777776543
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=59.08 E-value=14 Score=23.78 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 048616 18 DVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVG 59 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (272)
..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444455555555555444444444444444444444
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=59.05 E-value=40 Score=23.01 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHHHHHHHHH-cCCCCcHHhHH--HHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 204 AEKSFLEMIE-KGHKPSQVSFR--RIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 204 a~~~~~~~~~-~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
-..+++.+.+ .|..++..... +-+....+.|..+.+.-+.+.+++.+
T Consensus 132 ~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3455555666 56555443322 12333344455444444444444333
No 321
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.03 E-value=1e+02 Score=27.72 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHH
Q 048616 27 EKAYKIVEKMRDEDISPDVI--SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAI--RNYCIAKRLRDASGL 102 (272)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~ 102 (272)
+++.+.+..+....- +... .-..+...+.-.|+.+....++..+.+.. +..+...+. -++.-.|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 455555555554321 1111 11123334456677777777777766532 333333333 344577999999999
Q ss_pred HHHHHHcCCCCCHHh-HH---HHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 103 MDEMVEKGLSPNATT-YN---LFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
.+.+... .++.. |. ++.-+|+..|+.....++++.+.... ..+..-...+.-++...|+.+.+.+++..+.+
T Consensus 547 i~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 547 ITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 9888764 23332 22 33456778899888888999887652 22333232233344446666667777766655
Q ss_pred cCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048616 179 KGFGSYILVSDVLFDLLCDMGKL-VEAEKSFLEMIE 213 (272)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 213 (272)
.+ .|....-..+.-+....|.. .++.+.+..+..
T Consensus 623 ~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 623 SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 44 55555444444444444443 567788888764
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.20 E-value=24 Score=20.21 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 36 MRDEDISPDVISYTSIIGGLGLVG-QPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544433 33444444443 34555666666655544445555555555555444
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.09 E-value=30 Score=22.16 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=19.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAK 94 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (272)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333334444455555555554443444444444444444433
No 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.66 E-value=46 Score=22.69 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=14.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPD 79 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (272)
+...+..|+.+.-.++.+-+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3334445555545556666666665544
No 325
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.77 E-value=71 Score=24.28 Aligned_cols=140 Identities=10% Similarity=-0.051 Sum_probs=80.1
Q ss_pred HHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHhHHHHH
Q 048616 54 GLGLVGQPDKARDV----LKEMKEYGCYPDAAAYNAAIRNYCIAKRLR-DASGLMDEMVE----KG--LSPNATTYNLFF 122 (272)
Q Consensus 54 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~ 122 (272)
.+.+.|+...|-++ .+-+.+.+.+++......++..+.....-+ .-.+++++++. .| ..-++.....+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34556776665554 555667788889888888888876644222 22445555542 22 223677788888
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 123 RVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ---EKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
..|.+.+++.+|...|- .+-.-+...+..++.-+... |...++ +...-..++ -|.-.|
T Consensus 142 ~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~ 202 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFIS 202 (312)
T ss_dssp HHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTT
T ss_pred HHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhc
Confidence 89999999988887763 11111233444444333222 322221 111112222 345667
Q ss_pred CHHHHHHHHHHHH
Q 048616 200 KLVEAEKSFLEMI 212 (272)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (272)
+...|..+|+...
T Consensus 203 n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 203 NISFAHESKDIFL 215 (312)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888887664
No 326
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.56 E-value=55 Score=25.43 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMR 37 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~ 37 (272)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3455555555566666666555554
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.39 E-value=14 Score=25.78 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCccHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 166 VEIALQLWNDMVEKGFGSYIL----VSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
++.|..+|+.+.+..-.+... .--..+-.|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 566777776665442111111 111233456666777777776666543
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=52.23 E-value=61 Score=23.09 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048616 195 LCDMGKLVEAEKSFLEMI 212 (272)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~ 212 (272)
|.+.|.+++|.+++++..
T Consensus 124 Ciek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHTTCHHHHHHHHHHHS
T ss_pred HHHhcchHHHHHHHHHHh
Confidence 444555555555555443
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=51.92 E-value=83 Score=24.51 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHhhcCCh--hhHHHHHHHHHhCCCCCCHhhHHH
Q 048616 82 AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPN----ATTYNLFFRVFYWSNDL--RSSWNLYCRMMGTGCLPNTQSCMF 155 (272)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 155 (272)
....++.=|...|+.++|.+.++++.. |+ ...+..+..++-+ ++. +.+-.++..+...++-+.......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer-~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDR-SDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 456778888999999999999988753 32 2223333333333 322 345566666666555444433333
Q ss_pred HH
Q 048616 156 LV 157 (272)
Q Consensus 156 l~ 157 (272)
+.
T Consensus 89 f~ 90 (364)
T 3l6a_A 89 FL 90 (364)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 330
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.97 E-value=34 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 048616 131 LRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQ 163 (272)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (272)
.-.+.++++.+.+.+...+..|....+..+...
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 344555555554443334444444444444433
No 331
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.48 E-value=90 Score=23.94 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 048616 48 YTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIA-KRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 112 (272)
...++.-|...|+.++|.+.++++...... ...+...+..++-+. ...+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 456788888899999999888888522111 111222222222221 1234455666777766554
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.41 E-value=1.6e+02 Score=26.50 Aligned_cols=49 Identities=4% Similarity=-0.098 Sum_probs=32.1
Q ss_pred HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcC
Q 048616 116 TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT----QSCMFLVKLCKRQE 164 (272)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 164 (272)
.-|..++..+-+.+.++-+.++-+...+.--.-|. ..+..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36778888888888888888888777653212222 35666666665544
No 333
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=45.82 E-value=20 Score=22.81 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKAR 65 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 65 (272)
.|...+.+++.+-|.++++-..+.| +...|..++-.|...=+++-++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3444444555555555555555443 4444444444444444444443
No 334
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.82 E-value=64 Score=21.47 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH
Q 048616 77 YPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSP-NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT 150 (272)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (272)
.-|+.-...-+.---. .+.+..+|..|...|+-. -+..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 65 knD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3455544444432222 244888999888876543 3556777778888899999999999988887766654
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.57 E-value=26 Score=24.64 Aligned_cols=207 Identities=7% Similarity=-0.004 Sum_probs=93.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDV---ISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRNY 90 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 90 (272)
.+...+..|+.+.+..+ .+.|..++. .-++ .+...+..|+.+-+ +.+.+.|..++... -...+...
T Consensus 14 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHML----VQAGANIDTCSEDQRT-PLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHH----HHcCCCcCccCCCCCC-HHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHH
Confidence 34555677887654444 444443332 2222 33444556766544 44445554433211 11233444
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCC---CHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcC
Q 048616 91 CIAKRLRDASGLMDEMVEKG-LSP---NATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS--CMFLVKLCKRQE 164 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 164 (272)
+..|+.+- ++.+.+.| ..+ +....+ .+...+..++.+- ++.+.+.|..++... -...+...+..|
T Consensus 85 ~~~~~~~~----~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 85 AKKGHYEV----VQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVDL----VKLLLSKGSDINIRDNEENICLHWAAFSG 155 (237)
T ss_dssp HHTTCHHH----HHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHcCCHHH----HHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence 55666543 44444443 221 111222 2334445566543 334444444433211 111233344556
Q ss_pred cHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILV--SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR--RIKALMELANKQEALQ 240 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~ 240 (272)
+.+-+ +.+.+.|..++... -...+...++.|+.+-+ +.+.+.|..++...-. +-+......++...+.
T Consensus 156 ~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 156 CVDIA----EILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp CHHHH----HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred CHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 65544 34444444333210 11233444566776544 3344556555433211 2444555667777777
Q ss_pred HHHHHHHh
Q 048616 241 NLSNKMAL 248 (272)
Q Consensus 241 ~~~~~~~~ 248 (272)
++.+.+.+
T Consensus 228 ~l~~~l~d 235 (237)
T 3b7b_A 228 QMSKALQD 235 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777654
No 336
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=45.22 E-value=71 Score=21.80 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=9.1
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHH
Q 048616 190 VLFDLLCDMG-KLVEAEKSFLEM 211 (272)
Q Consensus 190 ~li~~~~~~g-~~~~a~~~~~~~ 211 (272)
-++..+.+.| .++.+..+++.+
T Consensus 141 K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 141 KIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHC
Confidence 3444444444 233344444443
No 337
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=44.84 E-value=1.7e+02 Score=26.14 Aligned_cols=167 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048616 14 NCLIDVYCKDRQ---VEKAYKIVEKMRDE--DISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIR 88 (272)
Q Consensus 14 ~~li~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (272)
..++...|..|. .+.|.+.|+..... +.+.++..-..+...-.+.|..++-..++++.... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHH---HhCCCCCCHhhHHHHHHHHHhcCc
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRM---MGTGCLPNTQSCMFLVKLCKRQEK 165 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 165 (272)
+++...+.....++++................+..........+.+++.+.+= ...........+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 048616 166 VEIALQLWNDMVEKGFGS 183 (272)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~ 183 (272)
-++-.+-++...+.....
T Consensus 847 t~~~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMDV 864 (909)
T ss_dssp SHHHHHHHHHHHTTCSSS
T ss_pred CHHHHHHHHHHHhhCCcc
No 338
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=44.69 E-value=62 Score=21.02 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHH
Q 048616 19 VYCKDRQVEKAYKIVE 34 (272)
Q Consensus 19 ~~~~~g~~~~a~~~~~ 34 (272)
..++.|+.+.+..+++
T Consensus 14 ~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 14 EAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3445666655555543
No 339
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.61 E-value=72 Score=22.15 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=85.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhh
Q 048616 51 IIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYW 127 (272)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 127 (272)
.+...++.|+.+....+++.-...-..++..-.+ .+...+..|+.+- ++.+.+.|..++. ..++ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 4556677889888887776543211112332233 3344456677554 4445555554432 2222 3334455
Q ss_pred cCChhhHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCCHH
Q 048616 128 SNDLRSSWNLYCRMMGTGCLPNT---QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILV--SDVLFDLLCDMGKLV 202 (272)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 202 (272)
.|+.+ +++.+.+.|..++. .-.+ .+...+..|+.+-+..++ +.|..++... -...+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVMLL----EGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 56654 34444445544432 2223 334445667776554444 4443333210 112344445667766
Q ss_pred HHHHHHHHHHHcCCCCcHHhHH--HHHHHHHHhhhHHHHHHHHHHHHhcCCC
Q 048616 203 EAEKSFLEMIEKGHKPSQVSFR--RIKALMELANKQEALQNLSNKMALFGPS 252 (272)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (272)
-+. .+.+.|..++..... +-+......|..+-+. .+.+.|..
T Consensus 154 ~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~ 197 (231)
T 3aji_A 154 MVH----ILLFYKASTNIQDTEGNTPLHLACDEERVEEAK----FLVTQGAS 197 (231)
T ss_dssp HHH----HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCC
T ss_pred HHH----HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH----HHHHCCCC
Confidence 444 344566655543221 2344445566655444 44444643
No 340
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.51 E-value=29 Score=23.42 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 048616 12 SYNCLIDVYCKDRQVEKAYKIVEKMRD 38 (272)
Q Consensus 12 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 38 (272)
....+|.-|...|+.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 346678888888999999999988763
No 341
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=43.16 E-value=21 Score=20.57 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=17.9
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 5 GVKPDIVSYNCLIDVYCKDRQVEKAYKIVEKM 36 (272)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 36 (272)
+++|++.||+-+...+-+..-..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55666666766666555444444555444443
No 342
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=42.77 E-value=20 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 048616 227 KALMELANKQEALQNLSNK 245 (272)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~ 245 (272)
+......|..+-+..+++.
T Consensus 237 L~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 237 LALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHC
Confidence 3444556666655544443
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.76 E-value=62 Score=20.44 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048616 32 IVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKE 73 (272)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (272)
+|+.+....+.|+...--.-+..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444443333222223334455666666666666554
No 344
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.34 E-value=1.3e+02 Score=25.20 Aligned_cols=74 Identities=7% Similarity=-0.059 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 048616 94 KRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIA 169 (272)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (272)
.+.........+++.+=+--+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|++.|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 344445556666655422224555666777777888888888877777544222 33344 455666777776654
No 345
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.32 E-value=1.1e+02 Score=23.16 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 048616 13 YNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ--PDKARDVLKEMKEYGCY 77 (272)
Q Consensus 13 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 77 (272)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 356677777778888888777777531111 12223333333433322 34456666666665543
No 346
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=41.90 E-value=61 Score=20.13 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=15.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhc
Q 048616 226 IKALMELANKQEALQNLSNKMALF 249 (272)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~ 249 (272)
|..+..-..-.++...+|+++...
T Consensus 85 LMta~~~~~la~e~I~lyk~~~~~ 108 (109)
T 3k1s_A 85 LMNAITVKELAAEFIDLYKKLEAK 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555556666777777776544
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.60 E-value=1.4e+02 Score=24.05 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048616 93 AKRLRDASGLMDEMVEKGLSPNATTYNLFFRV 124 (272)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (272)
.++.+.|+..+.+|.+.|..|....-..+..+
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666666655443333333333
No 348
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.63 E-value=79 Score=21.05 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048616 61 PDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLS 112 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (272)
.+.+..++..+.+.|.-.|...-...+....+.| .....+-.++.+.|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3445556666666666544444445555554433 2344555666666664
No 349
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.51 E-value=93 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=16.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048616 58 VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNY 90 (272)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (272)
..|.+.|+-++-+|.+.| .|.-..-..++.+.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 355666666666666666 44333333333333
No 350
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=40.04 E-value=38 Score=24.56 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-------CHhhHHHHHHHHH--hcCChhHHHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISP-------DVISYTSIIGGLG--LVGQPDKARDVLKEM 71 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (272)
.+...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3444567899998888888776655332 3334455555554 357777777676654
No 351
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=39.76 E-value=30 Score=22.31 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEK 35 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~ 35 (272)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34445667787777777766
No 352
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=39.52 E-value=29 Score=22.38 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHHH
Q 048616 91 CIAKRLRDASGLMDE 105 (272)
Q Consensus 91 ~~~~~~~~a~~~~~~ 105 (272)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334554444444443
No 353
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.40 E-value=86 Score=24.61 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCChhHHHHHH
Q 048616 15 CLIDVYCKDRQVEKAYKIVEKMRDEDISPDVI--SYTSIIGGLGLVGQPDKARDVL 68 (272)
Q Consensus 15 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 68 (272)
+.+...+..|+.+-+..+++ .|..|+.. ...+.+...+..|+.+-+..++
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34555667788766555554 34444321 1122344455567665444444
No 354
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.07 E-value=2.6e+02 Score=26.37 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHH
Q 048616 165 KVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQ 240 (272)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (272)
..+...+.|.++.+.--..|.......+..-..++++..|.+++.++.+. +|+...|..++..+...|...-+.
T Consensus 1264 ~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w~h~~~ 1337 (1354)
T 3lxu_X 1264 SLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGHEHIRT 1337 (1354)
T ss_dssp GHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCHHHHH
Confidence 35566677777776521223333333344445789999999999999987 578888988888888887755444
No 355
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=38.07 E-value=89 Score=20.90 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=4.8
Q ss_pred HHHHHHHHhcC
Q 048616 189 DVLFDLLCDMG 199 (272)
Q Consensus 189 ~~li~~~~~~g 199 (272)
.-++..+.+.|
T Consensus 136 ~K~~~~L~rrG 146 (162)
T 3dfg_A 136 RKAADLLARRG 146 (162)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 33444444444
No 356
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.56 E-value=1.1e+02 Score=21.31 Aligned_cols=184 Identities=14% Similarity=0.062 Sum_probs=92.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISP---DVISYTSIIGGLGLVGQPDKARDVLKEMKEYG----CYPDAAAYNAAIR 88 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~ 88 (272)
.+...++.|+.+.+..+++. .|..+ +..-++ .+...+..|+.+-+..+++.-.... ...+..-.+ .+.
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~ 80 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALH 80 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHH
Confidence 34556678888776666643 13222 222233 3444456677766655554322110 001112222 334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHh---------------HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh-
Q 048616 89 NYCIAKRLRDASGLMDEMVEKGLSPNATT---------------YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS- 152 (272)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 152 (272)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.. +.+.|..++...
T Consensus 81 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 81 IAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL----LIEHGADIRAQDS 152 (232)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHH----HHHTTCCTTCCCT
T ss_pred HHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCCCC
Confidence 445567755 4444455555443321 1223444455666544443 444454443221
Q ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 153 -CMFLVKLCKRQEKVEIALQLWNDMVEKGFGS---------YILVSDVLFDLLCDMGKLVEAEKSFLEMIE 213 (272)
Q Consensus 153 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 213 (272)
-...+...+..|+.+.+..+++.+.+.|..+ +..-.+ -+...++.|+.+-+.-+++.-..
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 1123455567889888888888888776433 222222 34445677888776666665543
No 357
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.73 E-value=1.4e+02 Score=22.37 Aligned_cols=99 Identities=9% Similarity=0.054 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCCHh---hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048616 136 NLYCRMMGTGCLPNTQ---SCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSY---ILVSDVLFDLLCDMGKLVEAEKSFL 209 (272)
Q Consensus 136 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 209 (272)
.+.+.+.+.|..++.. -.+ .+...+..|..+.+..++.. .+..++ ..-.+.|. .-++.|+.+- .+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v~ 290 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI----AE 290 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCC-HHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----HH
T ss_pred HHHHHHHHCCCCCCCcCCCCCC-HHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----HH
Confidence 3444445555444322 222 23344566776665554432 122111 11112232 3345666553 33
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 048616 210 EMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNKMALFG 250 (272)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (272)
.+++.|..|+..+ .+....+.|+.+ +.+-+++.|
T Consensus 291 ~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 291 LLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc
Confidence 4456677776654 233334455554 334455556
No 358
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.98 E-value=35 Score=23.28 Aligned_cols=49 Identities=8% Similarity=-0.023 Sum_probs=29.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048616 43 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI 92 (272)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (272)
|....++.++..++...-.+.++..+.+..+.| ..+..+|-.-++.+++
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455666666666666666666666666665 3455555555555554
No 359
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.87 E-value=1.6e+02 Score=22.91 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCH
Q 048616 11 VSYNCLIDVYCKDRQVEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQ--PDKARDVLKEMKEYGCYPDA 80 (272)
Q Consensus 11 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 80 (272)
..-..+|.-|...|+.++|...++++.... .........++......++ .+.+-.++..+...++-+..
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 345788999999999999999999985311 0012223333333333332 34566667777766554333
No 360
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.81 E-value=99 Score=20.47 Aligned_cols=66 Identities=8% Similarity=0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCcc
Q 048616 118 YNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQE--KVEIALQLWNDMVEKGFGSY 184 (272)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 184 (272)
...++.-|...++.++|...++++.... --...+...+..++-+.+ ..+.+..++..+...++-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4556677777777777777777764211 112233344444444432 23455566666665554433
No 361
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.21 E-value=57 Score=19.57 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHc
Q 048616 96 LRDASGLMDEMVEK 109 (272)
Q Consensus 96 ~~~a~~~~~~~~~~ 109 (272)
.++|.++++.+...
T Consensus 53 ~~~ar~Lld~L~~r 66 (97)
T 3ygs_P 53 RDQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444433
No 362
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=34.11 E-value=70 Score=23.45 Aligned_cols=211 Identities=12% Similarity=0.024 Sum_probs=75.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhh---------CCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 048616 10 IVSYNCLIDVYCKDRQVEKAYKIVEKMRD---------EDI-SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPD 79 (272)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (272)
.....+.+...+..|+.++..++...... .++ ..+..-++ .+...+..|+.+.+. .+.+.|..++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t-~L~~Aa~~g~~~~v~----~Ll~~g~~~~ 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS-PMHEAAIHGHQLSLR----NLISQGWAVN 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCC-HHHHHHHTTCHHHHH----HHHHTTCCSC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCC-HHHHHHHcCCHHHHH----HHHHCCCCCC
Confidence 34455666777778887777765443211 111 11222223 344455667765444 4444554443
Q ss_pred HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCHhh-H
Q 048616 80 AAA--YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA---TTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNTQS-C 153 (272)
Q Consensus 80 ~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 153 (272)
... -...+...+..|+.+-+ +.+.+.|..++. .-.+ .+...+..|+.+-+.. +.+.|..++... -
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g 157 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHT-PLFNACVSGSWDCVNL----LLQHGASVQPESDL 157 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHH----HHHTTCCSSCSCTT
T ss_pred CcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCC-HHHHHHHcCHHHHHHH----HHHCCCCCCCCCCC
Confidence 211 11233444556775544 344444544332 1222 2333445566544433 333433332111 1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH-HHHHH
Q 048616 154 MFLVKLCKRQEKVEIALQLWNDMVEKGFGSYI---LVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFR-RIKAL 229 (272)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~ 229 (272)
...+...+..|+.+-+..++ +.|..++. .-.+ .+...+..|+.+-+.. +.+.|..++..... +.+..
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~~~~~~v~~----Ll~~ga~~~~~~~g~t~L~~ 228 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLI----AYGGNIDHKISHLGT-PLYLACENQQRACVKK----LLESGADVNQGKGQDSPLHA 228 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHH----HTTCCTTCCBTTTBC-HHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTBCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCC-HHHHHHHcCcHHHHHH----HHHCCCCCCCCCCCCCHHHH
Confidence 12334445667766544444 34433321 1112 3334456677654443 34455555431111 23444
Q ss_pred HHHhhhHHHHHHHH
Q 048616 230 MELANKQEALQNLS 243 (272)
Q Consensus 230 ~~~~~~~~~a~~~~ 243 (272)
....|..+-+..++
T Consensus 229 A~~~~~~~~v~~Ll 242 (285)
T 3d9h_A 229 VVRTASEELACLLM 242 (285)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 45566665444333
No 363
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.00 E-value=62 Score=17.90 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 189 DVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
+-+++.++...-++++.-.++++.+.|. .+...|..-.+..++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344444444444455555555544442 233444433333333
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.97 E-value=1.2e+02 Score=21.23 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
|-.+.+.|+-.+-+|++.|..|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4456666666666666666555444444444443
No 365
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.80 E-value=1.3e+02 Score=21.54 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCCH
Q 048616 97 RDASGLMDEMVEKGLSPN-ATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLPNT 150 (272)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (272)
+.+..+|..|...|+--. +..|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466677777777765433 445666677777788888888888777666555543
No 366
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=33.51 E-value=46 Score=23.09 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=9.2
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 048616 18 DVYCKDRQVEKAYKIVEK 35 (272)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~ 35 (272)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 334455665555555543
No 367
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=33.12 E-value=1.2e+02 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (272)
...+|.++.+.|++++|.+++.++..
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777766654
No 368
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.01 E-value=1.9e+02 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048616 78 PDAAAYNAAIRNYCIAKRLRDASGLMDEMVE 108 (272)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (272)
.+......+... ..|+..+++.+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 445555555544 35677777776666654
No 369
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.64 E-value=1.3e+02 Score=21.11 Aligned_cols=41 Identities=20% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048616 51 IIGGLG---LVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYC 91 (272)
Q Consensus 51 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (272)
+|+++. +..|.+.|+-++-+|.+.|..|.-..-..++.+.-
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 444443 34677788888888877776555444444444443
No 370
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.59 E-value=98 Score=19.75 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=13.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHH
Q 048616 119 NLFFRVFYWSNDLRSSWNLYCRM 141 (272)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~ 141 (272)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555556666665555555
No 371
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.18 E-value=1.5e+02 Score=22.49 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=74.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048616 44 DVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAA--YNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLF 121 (272)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (272)
|..-++.|. ..+..|+.+.+..++ +.|..++... -...+...+..|+.+- ++.+.+.|..++...-...
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDT----AKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCH
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHH----HHHHHHCCCCccccCCCCH
Confidence 454455444 445667766555544 4554443321 1123444555677654 4444444544443222234
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCCCCCCH--------------------hhHHHHHHHHHhcC--cHHHHHHHHHHHHHc
Q 048616 122 FRVFYWSNDLRSSWNLYCRMMGTGCLPNT--------------------QSCMFLVKLCKRQE--KVEIALQLWNDMVEK 179 (272)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 179 (272)
+...+..|+.+-+..+++.....+..++. .-.+.+ ...+..| +.+-+..+++.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll~~---- 162 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL---- 162 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHHHc----
Confidence 44556678877777777664443433332 112333 3444666 66655555443
Q ss_pred CCCccH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048616 180 GFGSYI---LVSDVLFDLLCDMGKLVEAEKSFLE 210 (272)
Q Consensus 180 ~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 210 (272)
|..++. .-.+ .+...+..|+.+-+..+++.
T Consensus 163 ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 163 GASPTAKDKADET-PLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 333321 1122 33444577887755555543
No 372
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.12 E-value=1.6e+02 Score=23.78 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--------HHHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 47 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDA--------AAYN-AAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
..+.+.+.|.+.++...+..+++.+...+..|+. .+|. -+...+...+++.+|.+.+.+....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4577889999999999999999999877653322 3343 4456677889999999888776654
No 373
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=31.75 E-value=87 Score=21.60 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=71.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHH
Q 048616 52 IGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNA------TTYNLFFRVF 125 (272)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~ 125 (272)
+...++.|+.+.+..+++.-.......+..-.+ .+...+..|+.+ +++.+.+.|..++. ..++ .+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t-~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWT-PFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCC-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHH----HHHHHHhccccccccccCCCCCCC-HHHHH
Confidence 344456677666665555432221112222222 233344556654 34444444422222 2222 23334
Q ss_pred hhcCChhhHHHHHHHHHhCC--CCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhc
Q 048616 126 YWSNDLRSSWNLYCRMMGTG--CLPN---TQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYIL--VSDVLFDLLCDM 198 (272)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 198 (272)
+..|+.+ +++.+.+.| ..++ ..-.+. +...+..|+.+-+..++ +.|..++.. .-...+...+..
T Consensus 80 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 80 CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHT
T ss_pred HHcCCHH----HHHHHHhCCCCcccccCCcCCCCH-HHHHHHcCCHhHHHHHH----HcCCCccccCCCCCCHHHHHHHc
Confidence 4555544 333344443 1111 112222 33344667666544444 334333211 011233444566
Q ss_pred CCHHHHHHHHHHHHHcC-CCCcHHhH--HHHHHHHHHhhhHHHHHHHH
Q 048616 199 GKLVEAEKSFLEMIEKG-HKPSQVSF--RRIKALMELANKQEALQNLS 243 (272)
Q Consensus 199 g~~~~a~~~~~~~~~~~-~~p~~~~~--~~l~~~~~~~~~~~~a~~~~ 243 (272)
|+.+-+ +.+.+.| ..++.... .+-+......|+.+-+..++
T Consensus 151 ~~~~~v----~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 151 GSLKLI----ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp TCHHHH----HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHH----HHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 776533 3344444 33332211 12333444566666555544
No 374
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.40 E-value=1.2e+02 Score=20.22 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC
Q 048616 96 LRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGTGCLP 148 (272)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (272)
.+....+++.+.+.|.-.|...-...+....+.| .....+-.++...|+.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 4556677777777777645544455666655533 23556667777777653
No 375
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.97 E-value=2.4e+02 Score=23.65 Aligned_cols=74 Identities=9% Similarity=-0.025 Sum_probs=33.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhH
Q 048616 59 GQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSS 134 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (272)
.+.+......+++..+=.--+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|+++|+++++
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 344455566666665532334556667788888888888888888887765443 34444 566677888877664
No 376
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.90 E-value=1.4e+02 Score=21.12 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=17.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048616 92 IAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVF 125 (272)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (272)
|-.+.+.|+-.+-+|++.|..|....-..++.+.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555555556665555544444433444333
No 377
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=29.90 E-value=62 Score=16.74 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHHhhhHHHHHHHHHH
Q 048616 200 KLVEAEKSFLEMIEKGHKPSQVSFRRIKALMELANKQEALQNLSNK 245 (272)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (272)
++..|.++++.+.+.|--|+... . -++--.+..-...+.++|+.
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL-~-aLq~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKL-A-SLQQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHH-H-HHHHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHH-H-HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766665554321 1 12222334445555555543
No 378
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=29.27 E-value=59 Score=18.32 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhc
Q 048616 26 VEKAYKIVEKMRD-EDISPDVISYTSIIGGLGLV 58 (272)
Q Consensus 26 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 58 (272)
.++|.+.|.+|++ .++. ...+|...+..+..-
T Consensus 14 ~eea~~~F~~LL~e~~V~-~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVP-SNASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHHTTCC-TTCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccC
Confidence 4566666666654 3333 334666666655443
No 379
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.91 E-value=1.1e+02 Score=19.26 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=10.8
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 048616 160 CKRQEKVEIALQLWNDMVE 178 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~ 178 (272)
+...++++.|..+...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3455566666666655554
No 380
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.80 E-value=1.6e+02 Score=21.03 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048616 61 PDKARDVLKEMKEYGCYPDAA--AY-----NAAIRNYCIAKRLRDASGLMDEMVEK 109 (272)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (272)
++.|+.+|+.+.+.-..++.. .- -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 356777777766542111111 11 12233466666677777666666543
No 381
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=28.55 E-value=1.4e+02 Score=22.88 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048616 171 QLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKP 218 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (272)
++++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...|...
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~ 277 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence 455666777888888888899999998889999999999998876543
No 382
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.43 E-value=2e+02 Score=23.29 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048616 153 CMFLVKLCKRQEKVEIALQLWNDMVEKGF 181 (272)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (272)
.+.+++.|.+.++...+..+++.+...+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 45555666666666666666666665544
No 383
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.37 E-value=72 Score=18.59 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCC
Q 048616 26 VEKAYKIVEKMRD-EDISPDVISYTSIIGGLGLVGQ 60 (272)
Q Consensus 26 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 60 (272)
.++|...|.+|+. .++. ...+|...+...+.-.+
T Consensus 16 ~eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVS-AFSTWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccCCc
Confidence 5667777777765 3444 33467776666554433
No 384
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.12 E-value=35 Score=18.41 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048616 198 MGKLVEAEKSFLEMIEKG 215 (272)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~ 215 (272)
.|+++.|...+-+|...+
T Consensus 36 ~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp TTCHHHHHHHHHHSSCCC
T ss_pred CCCHHHHHHHHHcCcCCC
Confidence 344444444444444333
No 385
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.44 E-value=1.3e+02 Score=20.58 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 048616 151 QSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCD 197 (272)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (272)
..+..++..++...-++.++..+.+....| ..+...|---++.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345666666666666666666666666665 3444444444444433
No 386
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.34 E-value=3.7e+02 Score=25.45 Aligned_cols=77 Identities=9% Similarity=-0.008 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 132 RSSWNLYCRMMGTGCLPNTQSCMFLVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
+...+.|.++.+---.-|.......+......+++..|.+++.++.+.. +....|..++..+...|- +-...+.+.+
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w-~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGH-EHIRTVINRM 1342 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCC-HHHHHHHHhh
Confidence 4445556666543222234444444444457899999999999998774 677777777776655543 3333444444
No 387
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.20 E-value=1.7e+02 Score=20.71 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 048616 16 LIDVYCKDRQVEKAYKIVEKMRDEDISPDV-------ISYTSIIGGLGLV---GQPDKARDVLKEMKE 73 (272)
Q Consensus 16 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 73 (272)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+. .. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCc
Confidence 345566789998888888877766654433 3334444443 44 777777777765544
No 388
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=27.15 E-value=2.3e+02 Score=22.23 Aligned_cols=67 Identities=7% Similarity=0.042 Sum_probs=45.2
Q ss_pred cCHHhHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 048616 8 PDIVSYNCLIDVYCKDRQ--VEKAYKIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG 75 (272)
Q Consensus 8 p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (272)
++..+|..+|.......+ .+++..+++.+..-. .++...=..|+....+.-..++...+.+-|.+.+
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 345689999988876654 678889998888754 3355555555555666667777777777777654
No 389
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.97 E-value=2.9e+02 Score=23.41 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=52.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCccHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHH
Q 048616 157 VKLCKRQEKVEIALQLWNDMVEKGFGSYILV----SDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQVSFRRIKALMEL 232 (272)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (272)
+.-+.+. +.+.|...+....+.. ..+... ...+...+...+...++...+...... .++.....-.+....+
T Consensus 222 ~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 3333443 7789999998886543 223222 222333334455355677777776544 2344334444555567
Q ss_pred hhhHHHHHHHHHHHHh
Q 048616 233 ANKQEALQNLSNKMAL 248 (272)
Q Consensus 233 ~~~~~~a~~~~~~~~~ 248 (272)
.|+++.+...|+.|..
T Consensus 298 ~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPM 313 (618)
T ss_dssp HTCHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHccc
Confidence 8999999999998754
No 390
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.96 E-value=3.5e+02 Score=24.36 Aligned_cols=107 Identities=9% Similarity=-0.055 Sum_probs=56.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------Hc
Q 048616 156 LVKLCKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMI---------------------EK 214 (272)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---------------------~~ 214 (272)
++..|...+..+-+.++.... +.+...--.+..+|...|++++|.++|++.. ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 445555566665554433221 1122211234555666667766666665321 01
Q ss_pred CCCC-cHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCCCH--HHHHHhhccc
Q 048616 215 GHKP-SQVSFRRIKALMELANKQEALQNLSNKMALFGPSMIPKR--EEYLAEMSAS 267 (272)
Q Consensus 215 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~--~~~~~ll~ac 267 (272)
.... ...-|..++..+.+.+.++-+.++.+..++.--.-.|+. ..+..+..+.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a 946 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTA 946 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 1111 222455688899999999988888888776432111221 2455666653
No 391
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.51 E-value=1.8e+02 Score=20.59 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=42.6
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 048616 47 SYTSIIGGLGL---VGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCIAKR-----LRDASGLMDEMVEKGLS 112 (272)
Q Consensus 47 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 112 (272)
.+-.+|+++.+ ..|.+.|+-++-+|.+.|..|.-..-..++.+.-..|. +..|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34446666654 57899999999999999876666555666655544443 33445555555555653
No 392
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.11 E-value=1.1e+02 Score=21.39 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHc
Q 048616 155 FLVKLCKRQEKVEIALQLWNDMVEK 179 (272)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (272)
..+..|.+.|.+++|.+++++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3445677888888888888886544
No 393
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.05 E-value=2.1e+02 Score=21.26 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=24.4
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 048616 160 CKRQEKVEIALQLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKSFLEMIEKGHKPSQ 220 (272)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (272)
.++.|+.+-+ +.+.+.|..++..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 280 A~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 280 AVELKLKKIA----ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTCHHHH----HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHcCCHHHH----HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3455665433 33445565555432 233345566654 34445666666654
No 394
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=24.89 E-value=1.8e+02 Score=22.16 Aligned_cols=112 Identities=4% Similarity=-0.011 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHc---CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCChhhHH
Q 048616 62 DKARDVLKEMKEY---GCYPDAA---AYNAAIRNYCIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDLRSSW 135 (272)
Q Consensus 62 ~~a~~~~~~~~~~---~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (272)
+.|...|..+.+. ...++.. .....+..+.+.-+ -++++.+.+.|+.|...++..++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566777777653 1222211 22222333333322 256677777888888888888888888888889999
Q ss_pred HHHHHHHhCCCCCC-Hh--hHHHHHHHH----HhcCcHHHHHHHHHHHH
Q 048616 136 NLYCRMMGTGCLPN-TQ--SCMFLVKLC----KRQEKVEIALQLWNDMV 177 (272)
Q Consensus 136 ~~~~~~~~~~~~~~-~~--~~~~l~~~~----~~~~~~~~a~~~~~~~~ 177 (272)
.+|+.+...|.... .. +..+++..+ ....++++...+++.+.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 99999988765432 22 222333322 33578888888776543
No 395
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.49 E-value=1.4e+02 Score=22.69 Aligned_cols=111 Identities=8% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 048616 31 KIVEKMRDEDISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNYCI---AKRLRDASGLMDEMV 107 (272)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 107 (272)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+-+...|...-..+.-+++..+.. ..+.++..+++..+.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q ss_pred HcCCCCCHHhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 048616 108 EKGLSPNATTYNLFFRVFYWSNDLRSSWNLYCRMMGT 144 (272)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (272)
.. .|....-.-+....-.....+-.++++.+.+.
T Consensus 294 ~~---~d~~~l~~~a~~l~~~~~~k~~~~~~~~~~~~ 327 (334)
T 2qq8_A 294 ED---LPAEELFASIATIQMQSRNKKWAQVLTALQKD 327 (334)
T ss_dssp TT---CCHHHHHHHHHHCCCEETTEEHHHHHHHHHC-
T ss_pred Cc---CCHHHHHHHHHHccCcHHHhhHHHHHHHHHHH
No 396
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.38 E-value=2e+02 Score=20.25 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=39.9
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhhcCCh-----hhHHHHHHHHHhCCCC
Q 048616 85 AAIRNY---CIAKRLRDASGLMDEMVEKGLSPNATTYNLFFRVFYWSNDL-----RSSWNLYCRMMGTGCL 147 (272)
Q Consensus 85 ~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 147 (272)
.+|+++ .|-.+.+.|+-.+-+|++.| .|....-..++.+.-.-|.- ..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 345554 45688999999999999999 77666666666665554432 2344555555555644
No 397
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.11 E-value=1.7e+02 Score=19.42 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCC-CcHHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Q 048616 200 KLVEAEKSFLEMIEKGHK-PSQVSFRRIKALMELANKQEALQNLSNKMALFGPS 252 (272)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (272)
++++|.+++..|++.-+. -.+..||..+..+...-...+...+|..+...+++
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcc
Confidence 567788888877654222 24466887666554322222236667777777654
No 398
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.93 E-value=95 Score=16.67 Aligned_cols=22 Identities=5% Similarity=0.133 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHhhCC-CCCCH
Q 048616 24 RQVEKAYKIVEKMRDED-ISPDV 45 (272)
Q Consensus 24 g~~~~a~~~~~~~~~~~-~~~~~ 45 (272)
-+++.|...|.++...| ++|+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 47899999999987644 55543
No 399
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.82 E-value=69 Score=14.78 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=15.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 048616 226 IKALMELANKQEALQNLSNKMA 247 (272)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~ 247 (272)
-+..|..-|..++|..+-++++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4566777777777777766654
No 400
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=22.34 E-value=34 Score=18.32 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCH
Q 048616 25 QVEKAYKIVEKMRDEDISPDV 45 (272)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~ 45 (272)
+++.|...|.+. +..++|+.
T Consensus 34 d~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHH
Confidence 688999999886 44466554
No 401
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.96 E-value=1.4e+02 Score=18.10 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048616 169 ALQLWNDMVEKGFGSYILVSDVLFDLLCDMG 199 (272)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 199 (272)
+.++.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444555555555555555544444
No 402
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.92 E-value=1.1e+02 Score=16.37 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=0.8
Q ss_pred hcCCHHH
Q 048616 197 DMGKLVE 203 (272)
Q Consensus 197 ~~g~~~~ 203 (272)
+.|++++
T Consensus 52 NrG~Yq~ 58 (61)
T 3ph0_C 52 NQGDYQR 58 (61)
T ss_dssp HC-----
T ss_pred ccchHhH
Confidence 3333333
No 403
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.70 E-value=1.5e+02 Score=17.73 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=8.8
Q ss_pred CChhHHHHHHHHHHHc
Q 048616 59 GQPDKARDVLKEMKEY 74 (272)
Q Consensus 59 ~~~~~a~~~~~~~~~~ 74 (272)
|++-+|.++++..-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 5555555555555444
No 404
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.62 E-value=1.5e+02 Score=17.80 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048616 187 VSDVLFDLLCDMGKLVEAEKSFLEM 211 (272)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~~ 211 (272)
.+..-.+.+.+.|++++|++.....
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4455667778888888887655543
Done!