Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>048617
MSPEPGPKPIQSSGSIKIINPPASILAAFSVLCLFTCSKPYNTTSTLKIPFLTFPSNPRR
FLKIPIMSRTNHQLHHHSFATPQSLSDWLKPRLPSDSFASWGVKPGTKNVHNLWLELSDG
ETCLADAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEE
AVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPE
EGEFCTEEAEEYADSSAADKALFVKRHYWKWRRAMRELRID

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048617
        (281 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2184002 - symbol:AT5G24460 species:3702 "Arabi...   632  7.9e-62   1


>TAIR|locus:2184002 [details] [associations]
            symbol:AT5G24460 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005618 "cell wall"
            evidence=IDA] InterPro:IPR015797 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005618 SUPFAM:SSF55811
            GO:GO:0016787 EMBL:AB025641 EMBL:AY062666 EMBL:AY093314
            IPI:IPI00520182 RefSeq:NP_197834.1 UniGene:At.27486
            UniGene:At.72008 ProteinModelPortal:Q9FGE4 SMR:Q9FGE4 PaxDb:Q9FGE4
            PRIDE:Q9FGE4 EnsemblPlants:AT5G24460.1 GeneID:832517
            KEGG:ath:AT5G24460 TAIR:At5g24460 eggNOG:NOG329282
            HOGENOM:HOG000242071 InParanoid:Q9FGE4 OMA:HQELSDG PhylomeDB:Q9FGE4
            ProtClustDB:CLSN2686494 ArrayExpress:Q9FGE4 Genevestigator:Q9FGE4
            Uniprot:Q9FGE4
        Length = 300

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 139/264 (52%), Positives = 171/264 (64%)

Query:    22 PASILAAFSVLCLFTCSKPYNTTSTLKIPFLTFPSNPRRFLKIPIMSRTNHQLHHHS--F 79
             P   LAA S+L L++  KP  +    +    +FP NPRR   I  MSR +      +  F
Sbjct:    33 PDIFLAAVSLLFLWSSPKPLVSLPPNRF---SFPLNPRR-RSITAMSRRSPPPPPPTQRF 88

Query:    80 ATPQSLSDWLKPRLPSDSFASWGVKPGTKNVHNLWLELSDGETCLADAXXXXXXXXXXXX 139
             A PQSLSDWL+ RLPSDSFA+WGVKPGTKNVHNLWLELSDGET LAD+            
Sbjct:    89 ANPQSLSDWLESRLPSDSFAAWGVKPGTKNVHNLWLELSDGETSLADSTPPVRTVNVVTV 148

Query:   140 XXIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN---D 196
               IGK+ +ILVE+HQELSDGS+R R RPL+EKMK  E+P+EAV RA+KEELGSI N   D
Sbjct:   149 RVIGKNGRILVEAHQELSDGSIRERFRPLSEKMKPEESPDEAVFRAIKEELGSIFNGDGD 208

Query:   197 SI--TVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPXXXXXXXX------- 247
             +I   ++I+PG+Y+++++ERNSLSYPGLPARY LHSV+A V+GLP               
Sbjct:   209 NIGQRIKILPGTYNRRVEERNSLSYPGLPARYALHSVNATVEGLPEQDFCTEEKEYEGGD 268

Query:   248 XXXXXXXXXXXXKALFVKRHYWKW 271
                          A+ VKRHYWKW
Sbjct:   269 STKDSVETLAAGNAVTVKRHYWKW 292


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      281       247   0.00078  114 3  11 22  0.45    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.45u 0.08s 22.53t   Elapsed:  00:00:02
  Total cpu time:  22.45u 0.08s 22.53t   Elapsed:  00:00:03
  Start:  Sat May 11 10:16:34 2013   End:  Sat May 11 10:16:37 2013

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