BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048617
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 144 KDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELG 191
++N+I + + +D + N+ K++ ETPE+AV+R ++EE+G
Sbjct: 14 ENNEIFI--TRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVG 59
>pdb|2PQV|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
pdb|2PQV|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 154
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 148 ILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSY 207
++V++H+ L + + + ++ NE+ E+AV+R VKEELG +V +
Sbjct: 25 LIVQNHKLLVTKD-KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRF 83
Query: 208 SKKLDERNSLSYPGLPARYVL 228
E + +SY + Y++
Sbjct: 84 -----EVDGVSYHNIEFHYLV 99
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 167 PLAEKMKSNETPEEAVIRAVKEELG 191
PL ++ NE PEEA IR KEE G
Sbjct: 32 PLGGHIEVNELPEEACIREAKEEAG 56
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 16 IKIINPPASILAAFSVLCLF-----TCSKPYNTTSTL-KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + Y+ + + K T P P R P
Sbjct: 522 IDLIEKPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTR----PNQGH 577
Query: 70 TNHQLHHHSFATPQSLSDWL 89
+ +LHH++ P S++ WL
Sbjct: 578 AHFELHHYAGNVPYSIAGWL 597
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 144 KDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELG 191
KD +ILV E + S+ + K+++ ETPEEA+ R + EELG
Sbjct: 31 KDGKILVGQRPE--NNSLAGQWEFPGGKIENGETPEEALARELNEELG 76
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 16 IKIINPPASILAAFSVLCLF-----TCSKPYNTTSTL-KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + Y+ + + K T P P R P
Sbjct: 521 IDLIEKPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTR----PNQGH 576
Query: 70 TNHQLHHHSFATPQSLSDWL 89
+ +LHH++ P S++ WL
Sbjct: 577 AHFELHHYAGNVPYSIAGWL 596
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 16 IKIINPPASILAAFSVLCLFTCSKPYNTTSTL------KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + + L K T P P R P
Sbjct: 515 IDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTR----PNQGP 570
Query: 70 TNHQLHHHSFATPQSLSDWLK 90
+ +LHH++ P S++ WL+
Sbjct: 571 AHFELHHYAGNVPYSITGWLE 591
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 16 IKIINPPASILAAFSVLCLFTCSKPYNTTSTL------KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + + L K T P P R P
Sbjct: 520 IDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTR----PNQGP 575
Query: 70 TNHQLHHHSFATPQSLSDWLK 90
+ +LHH++ P S++ WL+
Sbjct: 576 AHFELHHYAGNVPYSITGWLE 596
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 16 IKIINPPASILAAFSVLCLFTCSKPYNTTSTL------KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + + L K T P P R P
Sbjct: 516 IDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTR----PNQGP 571
Query: 70 TNHQLHHHSFATPQSLSDWLK 90
+ +LHH++ P S++ WL+
Sbjct: 572 AHFELHHYAGNVPYSITGWLE 592
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 16 IKIINPPASILAAFSVLCLFTCSKPYNTTSTL------KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + + L K T P P R P
Sbjct: 520 IDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTR----PNQGP 575
Query: 70 TNHQLHHHSFATPQSLSDWLK 90
+ +LHH++ P S++ WL+
Sbjct: 576 AHFELHHYAGNVPYSITGWLE 596
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 16 IKIINPPASILAAFSVLCLFTCSKPYNTTSTL------KIPFLTFPSNPRRFLKIPIMSR 69
I +I P IL+ C+F + + L K T P P R P
Sbjct: 520 IDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTR----PNQGP 575
Query: 70 TNHQLHHHSFATPQSLSDWLK 90
+ +LHH++ P S++ WL+
Sbjct: 576 AHFELHHYAGNVPYSITGWLE 596
>pdb|1GWI|A Chain A, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
pdb|1GWI|B Chain B, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
Length = 411
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 164 RCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITV-RIVPG 205
R + L EK S +TP E V+ A EL SI+ D++ R PG
Sbjct: 169 RLKVLFEKFFSTQTPPEEVV-ATLTELASIMTDTVAAKRAAPG 210
>pdb|2AD1|A Chain A, Human Sulfotransferase Sult1c2
pdb|2GWH|A Chain A, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
pdb|2GWH|B Chain B, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
Length = 298
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 168 LAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYV 227
E MK N E I+ + E +G L+D + +IV + + + +Y +PA +
Sbjct: 195 FYEDMKKNPKHE---IQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIM 251
Query: 228 LHSVDAFV 235
HS+ F+
Sbjct: 252 DHSISPFM 259
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 171 KMKSNETPEEAVIRAVKEELG 191
K++ ETPE A++R + EELG
Sbjct: 43 KLEPGETPEAALVRELAEELG 63
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 171 KMKSNETPEEAVIRAVKEELG 191
K++ ETPE ++IR ++EELG
Sbjct: 64 KVEQGETPEASLIRELEEELG 84
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 169 AEKMKSNETPEEAVIRAVKEELG 191
A ++ ETPEEAVIR V EE G
Sbjct: 49 AGAIEPGETPEEAVIREVWEETG 71
>pdb|2LLW|A Chain A, Solution Structure Of The Yeast Sti1 Dp2 Domain
Length = 71
Score = 27.3 bits (59), Expect = 9.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 174 SNETPEEAVIRAVKE-ELGSILNDSITVRIV 203
SNETPEE RA+K+ E+ +I+ D + I+
Sbjct: 5 SNETPEETYQRAMKDPEVAAIMQDPVMQSIL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,904,505
Number of Sequences: 62578
Number of extensions: 279630
Number of successful extensions: 689
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 22
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)