BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048617
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9X6X4|LIPB_MYXXA Octanoyltransferase OS=Myxococcus xanthus GN=lipB PE=3 SV=1
Length = 357
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 126 DAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRA 185
DA PP+RTV++ V+ G + ++L+ + G + L ++++ E+P +A R
Sbjct: 221 DAPPPMRTVSIAVVKGRGPEARVLLVRRRPERGGF----WQVLTGRLEAGESPAQAAARE 276
Query: 186 VKEELG 191
++EE G
Sbjct: 277 LEEETG 282
>sp|Q5SX40|MYH1_MOUSE Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1
Length = 1942
Score = 32.7 bits (73), Expect = 3.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 157 SDGSVRNRCRPLAEKMKSNETPEEAVIRAVKE---ELGSILNDSITVRIVPGSYSKKLDE 213
S G++ CR L +++ +T EE R + E + G + +S G YS++LDE
Sbjct: 1248 SKGNLEKMCRTLEDQVSELKTKEEEQQRLINELTAQRGRLQTES-------GEYSRQLDE 1300
Query: 214 RNSL 217
++SL
Sbjct: 1301 KDSL 1304
>sp|P08337|MUTT_ECOLI 8-oxo-dGTP diphosphatase OS=Escherichia coli (strain K12) GN=mutT
PE=1 SV=1
Length = 129
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 131 VRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEEL 190
++ + + I ++N+I + + +D + N+ K++ ETPE+AV+R ++EE+
Sbjct: 1 MKKLQIAVGIIRNENNEIFI--TRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEV 58
Query: 191 G 191
G
Sbjct: 59 G 59
>sp|Q2S9N9|RPPH_HAHCH RNA pyrophosphohydrolase OS=Hahella chejuensis (strain KCTC 2396)
GN=rppH PE=3 SV=1
Length = 161
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 37/128 (28%)
Query: 172 MKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSY--PGLPARYVLH 229
+K +E+PEEA+ R +KEE+G V IV G+ R L Y P RY H
Sbjct: 40 IKKDESPEEALFRELKEEVGL---PPEAVEIVAGT-------RGWLRYRLPKKMIRYDSH 89
Query: 230 SVDA-------FVDGLPEEGEFCTEEAEEYADSSAADKALFVKRHYWK------------ 270
V + L +E E CT Y D D +V YW
Sbjct: 90 PVCVGQKQKWFMLQLLADESEICT----NYTDKPEFDGWRWV--SYWYPLGQVVSFKREV 143
Query: 271 WRRAMREL 278
+RRAMRE
Sbjct: 144 YRRAMREF 151
>sp|Q58914|Y1519_METJA Uncharacterized protein MJ1519 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1519 PE=4 SV=1
Length = 1175
Score = 32.0 bits (71), Expect = 4.5, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 34/162 (20%)
Query: 141 IIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITV 200
++ D++ +VE + D R + L E K+ ET + I +KE +G I + IT+
Sbjct: 741 VLRADSKKIVELSKLFLDIDKEERIKILNEMFKNKETLGDNEIYRIKENIGGIEKEIITI 800
Query: 201 RIVPGSYSKK---------LDERNSLSY---------------PGLPARYVLHSVDAFVD 236
+V KK L E N+ + + + ++ F+
Sbjct: 801 EVVKDGNIKKSLENAIETILKENNTEDFFDFAVFNDKLQILVPTKTKGEFGSYMINLFIK 860
Query: 237 GLPEEGEFCTEEAEE-------YADSSAADKALFVKRHYWKW 271
+E +F ++ + + D ADK + ++ +Y KW
Sbjct: 861 ---QESKFIPDKYKNKMLENWFFGDGKVADKVIQIRNNYKKW 899
>sp|F6U5F9|INTU_XENTR Protein inturned OS=Xenopus tropicalis GN=intu PE=3 SV=1
Length = 953
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 108 KNVHNLWLELSDGETCLADAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRP 167
KN +LELS+GE + + P+ V V VR + +IL E + + S R R
Sbjct: 54 KNGELFYLELSEGEEEILLPLSPLEPVGVNHVRFNDSEAEILSEERKNVGKNS-EPRFRK 112
Query: 168 LAEKMKSNETPEEA 181
LA+ +K T ++
Sbjct: 113 LAKMLKKKHTSKKG 126
>sp|O45830|NDX1_CAEEL Putative nudix hydrolase 1 OS=Caenorhabditis elegans GN=ndx-1 PE=3
SV=1
Length = 365
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 133 TVNVVTVRII----GKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKE 188
VN V II G D ++L+ + + S R + A ++++ ET EEAV+R VKE
Sbjct: 71 NVNYVAAAIILRNQGDDTEVLL---IQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKE 127
Query: 189 ELG 191
E G
Sbjct: 128 ETG 130
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/94 (18%), Positives = 40/94 (42%)
Query: 160 SVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSY 219
S+ PL + E ++ +++ + + + +V Y + + E+ +L
Sbjct: 3418 SINKEVLPLKANLVVQENRHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQTLLE 3477
Query: 220 PGLPARYVLHSVDAFVDGLPEEGEFCTEEAEEYA 253
R+ + + + GL E E TE+++E+A
Sbjct: 3478 DAERCRHKMQTASTLISGLAGEKERWTEQSQEFA 3511
>sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo sapiens GN=C2CD3 PE=1 SV=4
Length = 2353
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 126 DAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRA 185
D I P + ++ T + + +++L S +L S R R L E+ +ETPE+A
Sbjct: 469 DDIVPSKKISQSTA--LARSSKVLESSDHKLKKRSAGKRNRNLVEQQMLSETPEDAQTMT 526
Query: 186 VKEELGSILNDSITVRIV 203
+ + ++L + +VRI+
Sbjct: 527 LSVDRLALLGRTHSVRII 544
>sp|A6W1S0|RPPH_MARMS RNA pyrophosphohydrolase OS=Marinomonas sp. (strain MWYL1) GN=rppH
PE=3 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 172 MKSNETPEEAVIRAVKEELG 191
+KS+ETPEEA+ R +KEE+G
Sbjct: 40 IKSDETPEEALFRELKEEVG 59
>sp|Q6JAN0|GPR98_DANRE G-protein coupled receptor 98 OS=Danio rerio GN=gpr98 PE=2 SV=1
Length = 6199
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 122 TCLADAIPPVRTVNVVTVRIIGKDNQILVESHQ-------ELSDGSVRNRCRPLAEK--- 171
T LAD IP + ++T+ DNQIL E D P+++
Sbjct: 720 TVLADNIPEINETIILTLDRTNVDNQILKPGFTSREIVILENDDPGGVFEFSPVSKGPWF 779
Query: 172 MKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSY-PGLPARYVLHS 230
+ ET E VIRA G +LN I ++P ++ L + PG R V+ +
Sbjct: 780 INEGETVELRVIRA----QGQLLNQLIRYTVIPSGTAQFYGATGILEFQPG--EREVMVA 833
Query: 231 VDAFVDGLPEEGE 243
+ A DG+PE E
Sbjct: 834 LVAKPDGIPELDE 846
>sp|P32090|MUTT_PROVU 8-oxo-dGTP diphosphatase OS=Proteus vulgaris GN=mutT PE=3 SV=1
Length = 112
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 171 KMKSNETPEEAVIRAVKEELG 191
K++ NETPE+A++R ++EE+G
Sbjct: 42 KLEDNETPEQALLRELQEEIG 62
>sp|A6UPR3|GATE_METVS Glutamyl-tRNA(Gln) amidotransferase subunit E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatE
PE=3 SV=1
Length = 633
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 168 LAEKMKSN--ETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPAR 225
+ E++K+N E PEE IR +KE LN+ + ++V SY+ +L E S YP +
Sbjct: 443 ICERIKNNLPEMPEEKTIRFIKE---YELNEDLAKQMVM-SYNVELFENLSKKYPNIKPT 498
Query: 226 YVLHSVDAFVDGLPEEG---EFCTEE 248
+ +++A + + EG E T+E
Sbjct: 499 LIATTLEATLKEIKREGLDTEVLTDE 524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,267,751
Number of Sequences: 539616
Number of extensions: 4623985
Number of successful extensions: 12347
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12333
Number of HSP's gapped (non-prelim): 27
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)