Query 048617
Match_columns 281
No_of_seqs 140 out of 199
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 11:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10546 pyrimidine (deoxy)nuc 99.7 5.8E-16 1.3E-20 122.5 11.6 92 131-239 1-93 (135)
2 PRK15434 GDP-mannose mannosyl 99.6 2.7E-15 5.8E-20 127.9 12.0 92 135-235 18-111 (159)
3 PRK10776 nucleoside triphospha 99.6 3.2E-15 6.9E-20 115.5 10.8 88 132-235 2-89 (129)
4 TIGR00586 mutt mutator mutT pr 99.6 3.1E-15 6.8E-20 116.4 10.5 90 132-237 2-91 (128)
5 cd03430 GDPMH GDP-mannose glyc 99.6 6.3E-15 1.4E-19 121.3 11.9 92 136-236 14-107 (144)
6 cd04687 Nudix_Hydrolase_28 Mem 99.6 1.1E-14 2.4E-19 115.2 11.8 90 136-235 2-91 (128)
7 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.4E-14 3.1E-19 112.5 10.6 58 137-196 2-59 (120)
8 cd04679 Nudix_Hydrolase_20 Mem 99.6 2.8E-14 6.1E-19 112.1 11.4 84 137-235 5-88 (125)
9 cd04691 Nudix_Hydrolase_32 Mem 99.6 2.4E-14 5.1E-19 113.0 10.9 59 135-195 1-59 (117)
10 cd04669 Nudix_Hydrolase_11 Mem 99.6 1.6E-14 3.5E-19 114.6 9.0 57 137-197 3-59 (121)
11 cd04682 Nudix_Hydrolase_23 Mem 99.6 2.6E-14 5.7E-19 112.4 10.0 59 136-195 3-61 (122)
12 cd04681 Nudix_Hydrolase_22 Mem 99.6 4.4E-14 9.6E-19 111.1 11.2 56 137-195 4-59 (130)
13 cd04696 Nudix_Hydrolase_37 Mem 99.5 8.2E-14 1.8E-18 109.8 12.0 58 135-197 3-60 (125)
14 PRK15472 nucleoside triphospha 99.5 1.1E-14 2.5E-19 117.3 7.3 60 135-195 4-63 (141)
15 cd04678 Nudix_Hydrolase_19 Mem 99.5 6.9E-14 1.5E-18 110.2 11.3 57 137-196 5-61 (129)
16 PLN02325 nudix hydrolase 99.5 1.7E-13 3.7E-18 113.2 12.4 62 135-199 9-70 (144)
17 cd03425 MutT_pyrophosphohydrol 99.5 1.2E-13 2.7E-18 104.8 10.6 86 134-235 1-86 (124)
18 cd04664 Nudix_Hydrolase_7 Memb 99.5 1.5E-13 3.2E-18 108.6 11.5 56 136-195 3-60 (129)
19 cd04680 Nudix_Hydrolase_21 Mem 99.5 1.3E-13 2.9E-18 106.2 10.5 53 137-195 3-55 (120)
20 cd04670 Nudix_Hydrolase_12 Mem 99.5 1.7E-13 3.7E-18 108.0 10.6 55 137-195 5-59 (127)
21 cd04684 Nudix_Hydrolase_25 Con 99.5 1.6E-13 3.5E-18 106.2 10.1 55 138-196 4-58 (128)
22 cd04671 Nudix_Hydrolase_13 Mem 99.5 1.6E-13 3.5E-18 110.3 10.1 59 136-197 2-60 (123)
23 cd04688 Nudix_Hydrolase_29 Mem 99.5 4.3E-13 9.3E-18 105.5 11.6 85 135-237 3-87 (126)
24 cd03675 Nudix_Hydrolase_2 Cont 99.5 3.1E-13 6.8E-18 107.1 10.2 57 136-196 1-57 (134)
25 cd03673 Ap6A_hydrolase Diadeno 99.5 4E-13 8.7E-18 104.4 10.6 57 135-197 2-61 (131)
26 cd04673 Nudix_Hydrolase_15 Mem 99.5 4.7E-13 1E-17 103.1 10.4 56 139-197 4-59 (122)
27 cd04689 Nudix_Hydrolase_30 Mem 99.5 6.1E-13 1.3E-17 104.5 10.9 55 137-197 3-57 (125)
28 cd04676 Nudix_Hydrolase_17 Mem 99.5 9E-13 1.9E-17 101.3 11.5 55 136-196 4-58 (129)
29 cd04699 Nudix_Hydrolase_39 Mem 99.5 1.3E-13 2.7E-18 106.9 6.8 58 136-195 3-61 (129)
30 PRK09438 nudB dihydroneopterin 99.5 4.8E-13 1E-17 108.7 10.4 54 137-195 10-63 (148)
31 cd04686 Nudix_Hydrolase_27 Mem 99.5 8.7E-13 1.9E-17 106.2 11.3 85 139-237 4-90 (131)
32 PRK08999 hypothetical protein; 99.5 4.9E-13 1.1E-17 121.0 11.0 93 131-239 2-95 (312)
33 cd04690 Nudix_Hydrolase_31 Mem 99.5 8E-13 1.7E-17 102.1 10.6 87 136-237 2-88 (118)
34 cd04672 Nudix_Hydrolase_14 Mem 99.4 1.2E-12 2.7E-17 103.1 10.6 51 140-197 8-58 (123)
35 cd03424 ADPRase_NUDT5 ADP-ribo 99.4 1.1E-12 2.4E-17 104.3 10.3 58 136-195 4-61 (137)
36 cd04677 Nudix_Hydrolase_18 Mem 99.4 1.8E-12 3.8E-17 101.7 10.3 55 136-196 9-63 (132)
37 cd03427 MTH1 MutT homolog-1 (M 99.4 1.4E-12 3E-17 103.4 9.7 84 136-235 3-86 (137)
38 cd03429 NADH_pyrophosphatase N 99.4 1.7E-12 3.7E-17 104.8 10.2 56 136-195 2-57 (131)
39 cd03672 Dcp2p mRNA decapping e 99.4 3.5E-13 7.7E-18 111.9 6.2 55 135-195 2-57 (145)
40 cd04692 Nudix_Hydrolase_33 Mem 99.4 2.2E-12 4.7E-17 104.9 10.3 60 136-196 4-67 (144)
41 cd03671 Ap4A_hydrolase_plant_l 99.4 4.2E-12 9.1E-17 103.8 11.6 56 136-196 5-60 (147)
42 cd04674 Nudix_Hydrolase_16 Mem 99.4 2.8E-12 6.1E-17 105.0 10.4 60 133-196 3-62 (118)
43 cd04693 Nudix_Hydrolase_34 Mem 99.4 1.1E-12 2.3E-17 103.7 7.3 59 136-196 2-61 (127)
44 cd04511 Nudix_Hydrolase_4 Memb 99.4 4E-12 8.7E-17 101.5 10.6 58 136-196 14-71 (130)
45 cd04700 DR1025_like DR1025 fro 99.4 9.7E-13 2.1E-17 107.7 7.2 64 131-197 10-73 (142)
46 cd04661 MRP_L46 Mitochondrial 99.4 1.6E-12 3.4E-17 105.3 8.1 48 144-195 11-58 (132)
47 cd02885 IPP_Isomerase Isopente 99.4 5.4E-12 1.2E-16 105.6 11.3 61 135-196 31-92 (165)
48 cd03426 CoAse Coenzyme A pyrop 99.4 4.1E-12 8.9E-17 105.8 10.2 56 139-196 7-66 (157)
49 cd04697 Nudix_Hydrolase_38 Mem 99.4 6.6E-12 1.4E-16 100.0 10.4 57 137-195 3-61 (126)
50 cd03428 Ap4A_hydrolase_human_l 99.3 6.8E-12 1.5E-16 98.5 9.8 53 137-196 5-60 (130)
51 PRK05379 bifunctional nicotina 99.3 9.4E-12 2E-16 116.7 12.1 90 135-235 203-294 (340)
52 cd03674 Nudix_Hydrolase_1 Memb 99.3 3E-12 6.5E-17 103.7 7.0 54 136-195 4-58 (138)
53 cd04685 Nudix_Hydrolase_26 Mem 99.3 1E-11 2.2E-16 101.9 9.8 57 137-194 3-59 (133)
54 PRK15393 NUDIX hydrolase YfcD; 99.3 2.4E-11 5.1E-16 104.2 11.6 60 135-195 38-98 (180)
55 PRK03759 isopentenyl-diphospha 99.3 3.7E-11 7.9E-16 102.8 11.8 59 136-195 36-95 (184)
56 cd04695 Nudix_Hydrolase_36 Mem 99.3 7.2E-12 1.6E-16 100.2 6.8 52 140-195 8-59 (131)
57 PF00293 NUDIX: NUDIX domain; 99.3 5.9E-12 1.3E-16 97.0 5.7 59 136-195 4-62 (134)
58 cd04667 Nudix_Hydrolase_10 Mem 99.2 1.3E-11 2.8E-16 95.8 6.3 51 138-195 3-53 (112)
59 cd04666 Nudix_Hydrolase_9 Memb 99.2 7.9E-11 1.7E-15 95.0 10.3 56 136-197 2-60 (122)
60 PRK00714 RNA pyrophosphohydrol 99.2 7.2E-11 1.6E-15 98.8 10.2 55 136-195 10-64 (156)
61 COG1051 ADP-ribose pyrophospha 99.2 7.7E-11 1.7E-15 98.7 10.4 67 131-200 6-72 (145)
62 TIGR02150 IPP_isom_1 isopenten 99.2 1.1E-10 2.5E-15 97.6 10.2 58 136-196 29-87 (158)
63 PRK00241 nudC NADH pyrophospha 99.2 6.6E-11 1.4E-15 107.9 9.4 101 78-195 85-188 (256)
64 cd04694 Nudix_Hydrolase_35 Mem 99.2 4.1E-11 8.9E-16 99.9 7.0 59 137-196 4-62 (143)
65 cd04665 Nudix_Hydrolase_8 Memb 99.2 1.5E-10 3.3E-15 94.2 9.3 48 141-195 6-53 (118)
66 cd02883 Nudix_Hydrolase Nudix 99.2 3E-10 6.6E-15 84.7 9.6 55 137-195 3-57 (123)
67 cd03431 DNA_Glycosylase_C DNA 99.2 3.9E-10 8.5E-15 85.9 10.2 82 135-236 4-85 (118)
68 TIGR02705 nudix_YtkD nucleosid 99.1 3.5E-10 7.5E-15 97.4 10.2 83 144-247 33-116 (156)
69 PRK11762 nudE adenosine nucleo 99.1 4.3E-10 9.4E-15 96.3 9.4 52 142-195 55-106 (185)
70 COG0494 MutT NTP pyrophosphohy 99.1 3.4E-10 7.4E-15 84.5 6.1 45 146-195 24-69 (161)
71 cd04663 Nudix_Hydrolase_6 Memb 99.0 2.1E-09 4.5E-14 89.6 9.0 51 137-194 3-55 (126)
72 PLN03143 nudix hydrolase; Prov 99.0 1.4E-09 3E-14 102.0 8.3 97 97-197 94-193 (291)
73 cd03676 Nudix_hydrolase_3 Memb 98.9 4.8E-09 1E-13 88.8 9.4 63 131-195 32-97 (180)
74 PRK10707 putative NUDIX hydrol 98.9 7.2E-09 1.6E-13 90.7 9.4 59 136-195 34-93 (190)
75 PRK10729 nudF ADP-ribose pyrop 98.9 9.8E-09 2.1E-13 90.6 10.2 86 137-236 52-141 (202)
76 TIGR00052 nudix-type nucleosid 98.9 7.2E-09 1.6E-13 90.1 8.7 86 138-237 48-137 (185)
77 cd04662 Nudix_Hydrolase_5 Memb 98.7 1.8E-08 3.9E-13 84.4 6.0 50 146-195 15-65 (126)
78 COG2816 NPY1 NTP pyrophosphohy 98.5 2.6E-07 5.5E-12 86.9 8.5 103 80-203 99-205 (279)
79 PLN02791 Nudix hydrolase homol 98.5 8.4E-07 1.8E-11 92.7 12.0 64 129-196 30-95 (770)
80 PLN02709 nudix hydrolase 98.5 8.9E-07 1.9E-11 80.6 10.3 49 146-195 51-100 (222)
81 KOG3084 NADH pyrophosphatase I 98.4 2.9E-07 6.2E-12 88.3 5.9 57 135-195 188-245 (345)
82 cd03670 ADPRase_NUDT9 ADP-ribo 98.4 7.4E-07 1.6E-11 78.9 6.2 42 147-194 50-91 (186)
83 PRK15009 GDP-mannose pyrophosp 98.3 4.1E-06 8.9E-11 73.7 9.7 84 137-235 48-136 (191)
84 PF14815 NUDIX_4: NUDIX domain 98.3 1.1E-06 2.5E-11 68.9 4.5 86 138-240 1-86 (114)
85 PLN02552 isopentenyl-diphospha 98.0 1.5E-05 3.3E-10 73.4 7.3 59 136-195 58-134 (247)
86 KOG3041 Nucleoside diphosphate 97.8 0.0001 2.2E-09 67.6 9.3 87 136-237 76-163 (225)
87 KOG2839 Diadenosine and diphos 97.7 0.00012 2.6E-09 63.6 7.1 58 133-195 8-68 (145)
88 KOG0648 Predicted NUDIX hydrol 97.2 0.00033 7.2E-09 66.7 4.6 129 54-193 22-173 (295)
89 COG1443 Idi Isopentenyldiphosp 97.2 0.0018 4E-08 58.2 8.3 53 138-195 37-94 (185)
90 PLN02839 nudix hydrolase 96.2 0.023 5E-07 55.9 8.9 61 134-195 206-267 (372)
91 KOG3069 Peroxisomal NUDIX hydr 96.1 0.011 2.4E-07 55.3 5.9 65 130-195 40-107 (246)
92 PRK10880 adenine DNA glycosyla 94.5 0.1 2.2E-06 50.7 6.7 75 138-235 234-308 (350)
93 KOG4195 Transient receptor pot 94.2 0.061 1.3E-06 50.7 4.3 29 162-190 149-177 (275)
94 COG4119 Predicted NTP pyrophos 92.9 0.3 6.4E-06 43.0 6.2 79 157-250 25-110 (161)
95 TIGR01084 mutY A/G-specific ad 92.6 0.33 7.3E-06 45.5 6.6 37 133-171 226-262 (275)
96 COG4112 Predicted phosphoester 91.8 1.1 2.4E-05 40.8 8.5 83 114-203 45-138 (203)
97 PF13869 NUDIX_2: Nucleotide h 87.0 1.7 3.6E-05 39.6 6.0 55 131-194 43-99 (188)
98 PRK13910 DNA glycosylase MutY; 84.4 3.1 6.8E-05 39.6 6.7 32 135-170 187-218 (289)
99 KOG2937 Decapping enzyme compl 64.8 1.2 2.6E-05 43.9 -1.7 57 133-195 81-138 (348)
100 KOG1689 mRNA cleavage factor I 56.9 10 0.00022 34.9 2.9 27 165-191 96-122 (221)
101 TIGR02433 lysidine_TilS_C tRNA 41.8 20 0.00044 24.3 1.8 28 89-117 3-30 (47)
102 COG1194 MutY A/G-specific DNA 39.1 25 0.00054 34.8 2.7 39 134-174 235-273 (342)
103 cd00126 PAH Pancreatic Hormone 39.1 27 0.00059 24.3 2.1 22 70-91 2-23 (36)
104 CHL00064 psbE photosystem II p 36.5 48 0.001 27.0 3.4 60 16-91 22-82 (83)
105 PRK02557 psbE cytochrome b559 35.9 48 0.001 26.8 3.3 59 16-90 22-81 (81)
106 PF14044 NETI: NETI protein 33.9 28 0.0006 26.6 1.6 14 171-184 3-16 (57)
107 TIGR01332 cyt_b559_alpha cytoc 30.5 66 0.0014 26.0 3.3 58 16-89 21-79 (80)
108 PF07026 DUF1317: Protein of u 29.9 35 0.00076 26.3 1.6 30 162-191 21-50 (60)
109 PF00159 Hormone_3: Pancreatic 29.8 44 0.00096 23.2 2.0 22 70-91 2-23 (36)
110 PF09505 Dimeth_Pyl: Dimethyla 29.4 31 0.00068 34.8 1.7 24 172-195 409-432 (466)
111 PRK07198 hypothetical protein; 26.1 2.6E+02 0.0056 28.8 7.3 42 143-191 159-200 (418)
112 PF02624 YcaO: YcaO-like famil 25.7 4.6E+02 0.0099 23.9 8.4 71 105-195 156-230 (332)
113 PF15603 Imm45: Immunity prote 25.5 58 0.0013 26.0 2.2 29 163-191 45-73 (82)
114 smart00309 PAH Pancreatic horm 24.6 67 0.0014 22.4 2.1 22 70-91 2-23 (36)
115 KOG0142 Isopentenyl pyrophosph 23.1 70 0.0015 30.2 2.6 78 106-195 35-122 (225)
116 PF07704 PSK_trans_fac: Rv0623 20.7 91 0.002 24.4 2.5 17 175-191 22-38 (82)
117 PHA02130 hypothetical protein 20.6 67 0.0014 25.6 1.7 36 76-111 10-55 (81)
No 1
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=5.8e-16 Score=122.49 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=67.8
Q ss_pred eeEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccc
Q 048617 131 VRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKK 210 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~ 210 (281)
++.|++++++| +++|+||+.+|+ .+|..++.|+|||||+++|||+++|+.||++||+|+.+.....+
T Consensus 1 ~~~~~~~~~ii-~~~~~vLL~~R~--~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~---------- 67 (135)
T PRK10546 1 MKMIDVVAAII-ERDGKILLAQRP--AHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYV---------- 67 (135)
T ss_pred CCeEEEEEEEE-ecCCEEEEEEcc--CCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeE----------
Confidence 34577777766 567899999997 56667899999999999999999999999999999997643221
Q ss_pred cccccCCCCCCCccEEEEEEEEEEe-cCCC
Q 048617 211 LDERNSLSYPGLPARYVLHSVDAFV-DGLP 239 (281)
Q Consensus 211 ~e~r~S~SYPGL~vryvLh~v~a~V-~GlP 239 (281)
....|.+.+.. +.++.+.+.. .|.+
T Consensus 68 --~~~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (135)
T PRK10546 68 --ASHQREVSGRR--IHLHAWHVPDFHGEL 93 (135)
T ss_pred --EEEEEecCCcE--EEEEEEEEEEecCcc
Confidence 12234455554 6677776654 3443
No 2
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.63 E-value=2.7e-15 Score=127.87 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=64.5
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC--ceEEeeCCCcccccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS--ITVRIVPGSYSKKLD 212 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~--~~V~Vl~gsy~~~~e 212 (281)
.+|.++|.+++|+||+.+|. +...++.|+||||||++|||+++|++||++||+|+.|... .-+.+... .
T Consensus 18 ~~v~~vI~~~~g~VLL~kR~---~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~------~ 88 (159)
T PRK15434 18 ISLDFIVENSRGEFLLGKRT---NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQH------F 88 (159)
T ss_pred EEEEEEEECCCCEEEEEEcc---CCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEe------e
Confidence 35667777888999999996 2235689999999999999999999999999999997521 11111111 0
Q ss_pred cccCCCCCCCccEEEEEEEEEEe
Q 048617 213 ERNSLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 213 ~r~S~SYPGL~vryvLh~v~a~V 235 (281)
.....++++....|.++.|.|++
T Consensus 89 ~~~~~~~~~~~~~~i~~~f~~~~ 111 (159)
T PRK15434 89 YDDNFSGTDFTTHYVVLGFRLRV 111 (159)
T ss_pred cccccCCCccceEEEEEEEEEEe
Confidence 11112234455568888888876
No 3
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.63 E-value=3.2e-15 Score=115.52 Aligned_cols=88 Identities=20% Similarity=0.305 Sum_probs=68.5
Q ss_pred eEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccc
Q 048617 132 RTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKL 211 (281)
Q Consensus 132 R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~ 211 (281)
+.+.+++++|++++|++|+.+|. .+|...+.|.||||++++||++++|+.||++||+|+.+.....
T Consensus 2 ~~~~~~~~ii~~~~~~vll~rR~--~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~------------ 67 (129)
T PRK10776 2 KKLQIAVGIIRNPNNEIFITRRA--ADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL------------ 67 (129)
T ss_pred ceeEEEEEEEECCCCEEEEEEec--CCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE------------
Confidence 45778888899999999999997 5676789999999999999999999999999999987652111
Q ss_pred ccccCCCCCCCccEEEEEEEEEEe
Q 048617 212 DERNSLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 212 e~r~S~SYPGL~vryvLh~v~a~V 235 (281)
+....|.|++.. +.++.+.|..
T Consensus 68 ~~~~~~~~~~~~--~~~~~~~~~~ 89 (129)
T PRK10776 68 FEKLEYEFPDRH--ITLWFWLVES 89 (129)
T ss_pred EEEEEeeCCCcE--EEEEEEEEEE
Confidence 123346677654 5566666653
No 4
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=3.1e-15 Score=116.41 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=71.2
Q ss_pred eEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccc
Q 048617 132 RTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKL 211 (281)
Q Consensus 132 R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~ 211 (281)
+.+.+++++|++.+|++|+.+|+ .+|..++.|+||||++++|||+++|+.||++||+|+.+.....+
T Consensus 2 ~~~~~~~~ii~~~~~~vLl~~R~--~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~----------- 68 (128)
T TIGR00586 2 KLQQIAVGIIRNENGEIIITRRA--DGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFE----------- 68 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEe--CCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEE-----------
Confidence 45677888888899999999998 67778999999999999999999999999999999987633221
Q ss_pred ccccCCCCCCCccEEEEEEEEEEecC
Q 048617 212 DERNSLSYPGLPARYVLHSVDAFVDG 237 (281)
Q Consensus 212 e~r~S~SYPGL~vryvLh~v~a~V~G 237 (281)
....|.|++.. ..++.+.|...|
T Consensus 69 -~~~~h~~~~~~--~~~~~~~~~~~~ 91 (128)
T TIGR00586 69 -KLEYEFYPRHI--TLWFWLLERWEG 91 (128)
T ss_pred -EEEEEECCCcE--EEEEEEEEEEcC
Confidence 13345566655 677777777643
No 5
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.61 E-value=6.3e-15 Score=121.31 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=64.9
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC--ceEEeeCCCccccccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS--ITVRIVPGSYSKKLDE 213 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~--~~V~Vl~gsy~~~~e~ 213 (281)
.|.++|+|.+|++|+.+|.. . .-.+.|.+|||++++|||+++|++||++||+|+.+... ..+.+... ..
T Consensus 14 ~v~~vI~~~~g~vLl~~R~~--~-p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~------~~ 84 (144)
T cd03430 14 SIDLIVENEDGQYLLGKRTN--R-PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEH------FY 84 (144)
T ss_pred EEEEEEEeCCCeEEEEEccC--C-CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEE------Ee
Confidence 56667778899999999962 1 23578999999999999999999999999999998744 22211111 00
Q ss_pred ccCCCCCCCccEEEEEEEEEEec
Q 048617 214 RNSLSYPGLPARYVLHSVDAFVD 236 (281)
Q Consensus 214 r~S~SYPGL~vryvLh~v~a~V~ 236 (281)
......++....+....+.|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (144)
T cd03430 85 DDNFFGDDFSTHYVVLGYVLKLS 107 (144)
T ss_pred ccccccCCCccEEEEEEEEEEEc
Confidence 11112345556677888888763
No 6
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.1e-14 Score=115.16 Aligned_cols=90 Identities=21% Similarity=0.115 Sum_probs=62.9
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccccccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERN 215 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~ 215 (281)
++|++|+.++|+||+.+|.. .+ .+.|.+|||++++|||+++|++||++||+|+.+...+.+.+.+. . ...
T Consensus 2 ~~a~~iv~~~~~vLl~~r~~--~~--~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~--~----~~~ 71 (128)
T cd04687 2 NSAKAVIIKNDKILLIKHHD--DG--GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREY--I----GHN 71 (128)
T ss_pred cEEEEEEEECCEEEEEEEEc--CC--CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEE--e----ccC
Confidence 34445555678999998863 22 36799999999999999999999999999999885543322211 1 111
Q ss_pred CCCCCCCccEEEEEEEEEEe
Q 048617 216 SLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 216 S~SYPGL~vryvLh~v~a~V 235 (281)
.+.|.+....+..+.|.|.+
T Consensus 72 ~~~~~~~~~~~i~~~f~~~~ 91 (128)
T cd04687 72 PTSELPGHFHQVELMFECKI 91 (128)
T ss_pred ccccCCCceeEEEEEEEEEE
Confidence 24455555556777787876
No 7
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.4e-14 Score=112.47 Aligned_cols=58 Identities=19% Similarity=0.395 Sum_probs=48.9
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+|.+|+.++|+||+.+|. ..+...+.|.+||||+++|||+++|++||++||+|+.+..
T Consensus 2 ~v~~vi~~~~~vLL~~r~--~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~ 59 (120)
T cd04683 2 AVYVLLRRDDEVLLQRRA--NTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDP 59 (120)
T ss_pred cEEEEEEECCEEEEEEcc--CCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccCh
Confidence 445555667899999886 4444578999999999999999999999999999998763
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=2.8e-14 Score=112.10 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=59.6
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccccC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNS 216 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~S 216 (281)
|.++|++.+|+||+.+|..-++ .+.|.+|||++++|||+++|++||++||+|+.+...+.+.+. .
T Consensus 5 ~~~~i~~~~~~vLL~~r~~~~~---~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~------------~ 69 (125)
T cd04679 5 CGAAILRDDGKLLLVKRLRAPE---AGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVV------------D 69 (125)
T ss_pred EEEEEECCCCEEEEEEecCCCC---CCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEE------------e
Confidence 3455668889999998863222 578999999999999999999999999999998743332211 1
Q ss_pred CCCCCCccEEEEEEEEEEe
Q 048617 217 LSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 217 ~SYPGL~vryvLh~v~a~V 235 (281)
+.+.+-...+..+.|.|.+
T Consensus 70 ~~~~~~~~~~~~~~f~~~~ 88 (125)
T cd04679 70 HIIEEPPQHWVAPVYLAEN 88 (125)
T ss_pred ecccCCCCeEEEEEEEEee
Confidence 1122222346777777765
No 9
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=2.4e-14 Score=113.00 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=49.0
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|+|+|+|+++ |++|+.+|...+. ...++|.+||||+++|||+++|+.||++||+|+.+.
T Consensus 1 ~~v~~vi~~~-~~vLL~rR~~~~~-~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 1 HGVVGVLFSD-DKVLLERRSLTKN-ADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPL 59 (117)
T ss_pred CeEEEEEEEC-CEEEEEEeCCCCC-CCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcc
Confidence 5677777765 8999998863221 256899999999999999999999999999999864
No 10
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1.6e-14 Score=114.55 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=48.2
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
|+|+|++++|++|+.+|. .+| .+.|+|||||+++|||+++|++||++||+|+.+...
T Consensus 3 ~~~ii~~~~~~vLL~~r~--~~~--~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~ 59 (121)
T cd04669 3 ASIVIINDQGEILLIRRI--KPG--KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE 59 (121)
T ss_pred eEEEEEeCCCEEEEEEEe--cCC--CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee
Confidence 345666777899999886 334 478999999999999999999999999999998643
No 11
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=2.6e-14 Score=112.44 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=51.0
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
||+++|+++ |+||+-+|...++....+.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 3 v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 3 VALALLIGD-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLP 61 (122)
T ss_pred eEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccc
Confidence 555656554 99999999865566678899999999999999999999999999999986
No 12
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=4.4e-14 Score=111.11 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=48.8
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|.++|.+++|++|+.+|+..+ -.+.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 4 v~~~i~~~~~~vLL~~r~~~~---~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 59 (130)
T cd04681 4 VGVLILNEDGELLVVRRAREP---GKGTLDLPGGFVDPGESAEEALIREIREETGLKVT 59 (130)
T ss_pred EEEEEEcCCCcEEEEEecCCC---CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccc
Confidence 456677889999999987433 25789999999999999999999999999999876
No 13
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=8.2e-14 Score=109.78 Aligned_cols=58 Identities=31% Similarity=0.286 Sum_probs=49.8
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
.+|.|+|.|.+|+||+.+|.. .++.|.+|||++++|||+++|+.||++||+|+.+...
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~-----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~ 60 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK-----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI 60 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC-----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccccc
Confidence 356777888899999998752 2468999999999999999999999999999998743
No 14
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.55 E-value=1.1e-14 Score=117.34 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=50.5
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+.++|.|++.+|+||+.+|+ ...+...+.|.+||||+|+|||+++|+.|||+||+|+.+.
T Consensus 4 r~~~~~ii~~~~~vLl~~R~-~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 4 RTIVCPLIQNDGAYLLCKMA-DDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL 63 (141)
T ss_pred eeEEEEEEecCCEEEEEEec-ccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence 34555566668999999987 2445677899999999999999999999999999999865
No 15
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=6.9e-14 Score=110.18 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=48.8
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+.|+|.|.+|+||+.+|.. +.-.++|.+|||++++|||+++|+.||++||+|+.+..
T Consensus 5 v~~ii~~~~~~iLl~~r~~---~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~ 61 (129)
T cd04678 5 VGVFVLNPKGKVLLGKRKG---SHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIEN 61 (129)
T ss_pred EEEEEECCCCeEEEEeccC---CCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccc
Confidence 4456677889999999962 23467899999999999999999999999999999874
No 16
>PLN02325 nudix hydrolase
Probab=99.52 E-value=1.7e-13 Score=113.23 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCce
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSIT 199 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~ 199 (281)
+|++++++.++|+||+.+|..-+ -.+.|.+|||++++|||+++|+.||++||+|+.+.....
T Consensus 9 ~~~v~~vi~~~~~vLL~rr~~~~---~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~ 70 (144)
T PLN02325 9 RVAVVVFLLKGNSVLLGRRRSSI---GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIEL 70 (144)
T ss_pred eEEEEEEEEcCCEEEEEEecCCC---CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE
Confidence 34444455556899999987322 247899999999999999999999999999999875433
No 17
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.52 E-value=1.2e-13 Score=104.77 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=68.2
Q ss_pred EEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccccc
Q 048617 134 VNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDE 213 (281)
Q Consensus 134 V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~ 213 (281)
|+|++++|.+++|++|+.+|+ .++..+++|.||||++++||++++|+.||++||+|+.+..... +.
T Consensus 1 ~~~~~~~i~~~~~~~Ll~~r~--~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~------------~~ 66 (124)
T cd03425 1 IEVVAAIIIDDDGRILIAQRP--AGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGEL------------LA 66 (124)
T ss_pred CeEEEEEEECCCCEEEEEEeC--CCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce------------EE
Confidence 578889998988999999987 4445789999999999999999999999999999998763211 12
Q ss_pred ccCCCCCCCccEEEEEEEEEEe
Q 048617 214 RNSLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 214 r~S~SYPGL~vryvLh~v~a~V 235 (281)
...+.+++.. ..++.+.|.+
T Consensus 67 ~~~~~~~~~~--~~~~~~~~~~ 86 (124)
T cd03425 67 TVEHDYPDKR--VTLHVFLVEL 86 (124)
T ss_pred EEEeeCCCCe--EEEEEEEEee
Confidence 3446677655 6777777765
No 18
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.52 E-value=1.5e-13 Score=108.56 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=48.5
Q ss_pred EEEEEEEec--CCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGK--DNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~--~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
++++++.+. +|++|+.+|. .+ ..+.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~--~~--~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~ 60 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRS--DK--YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPE 60 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeC--CC--CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChh
Confidence 455666777 8999999987 22 56799999999999999999999999999999975
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.3e-13 Score=106.16 Aligned_cols=53 Identities=25% Similarity=0.247 Sum_probs=46.4
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|.++|.+++|++|+-+|+ .+ ++|.+|||++++|||+++|++||++||+|+.+.
T Consensus 3 ~~~~i~~~~~~vLL~~r~--~~----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 3 ARAVVTDADGRVLLVRHT--YG----PGWYLPGGGLERGETFAEAARRELLEELGIRLA 55 (120)
T ss_pred eEEEEECCCCeEEEEEEC--CC----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccc
Confidence 456677889999998886 22 289999999999999999999999999999987
No 20
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.7e-13 Score=107.97 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=47.1
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|+|+|+|++|+||+.+|. . + ..+.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 5 ~~~~v~~~~~~vLl~~r~--~-~-~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~ 59 (127)
T cd04670 5 VGGLVLNEKNEVLVVQER--N-K-TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTE 59 (127)
T ss_pred EEEEEEcCCCeEEEEEcc--C-C-CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 345667888999998775 2 2 56789999999999999999999999999999876
No 21
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.50 E-value=1.6e-13 Score=106.23 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=46.3
Q ss_pred EEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 138 TVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 138 va~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.|+|.+ +|++|+.+|...+ -.+.|.+|||++|+|||+++|+.||++||+|+.+..
T Consensus 4 ~~ii~~-~~~vLl~~~~~~~---~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~ 58 (128)
T cd04684 4 YAVIPR-DGKLLLIQKNGGP---YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEI 58 (128)
T ss_pred EEEEEe-CCEEEEEEccCCC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeec
Confidence 344554 4899999987443 468899999999999999999999999999999774
No 22
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.6e-13 Score=110.27 Aligned_cols=59 Identities=31% Similarity=0.377 Sum_probs=51.7
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
||+|+|++.+|+||+.+|. .++ .++.|.+|||++++|||+++|++||++||+|+.+...
T Consensus 2 ~~~~vv~~~~~~vLl~~r~--~~~-~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~ 60 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEA--KRS-CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT 60 (123)
T ss_pred EEEEEEEcCCCEEEEEEec--CCC-CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc
Confidence 6788889999999999886 222 4678999999999999999999999999999998744
No 23
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=4.3e-13 Score=105.54 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=60.5
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDER 214 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r 214 (281)
+|.++++ .+|+||+.+|.. .+.|.+|||++++|||+++|+.||++||+|+.+.....+... .
T Consensus 3 ~v~~vi~--~~~~vLl~~~~~------~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~----------~ 64 (126)
T cd04688 3 RAAAIII--HNGKLLVQKNPD------ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVV----------E 64 (126)
T ss_pred EEEEEEE--ECCEEEEEEeCC------CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEE----------E
Confidence 4444333 355999988752 568999999999999999999999999999987644332211 1
Q ss_pred cCCCCCCCccEEEEEEEEEEecC
Q 048617 215 NSLSYPGLPARYVLHSVDAFVDG 237 (281)
Q Consensus 215 ~S~SYPGL~vryvLh~v~a~V~G 237 (281)
..+.|.+.......+.|.|++.+
T Consensus 65 ~~~~~~~~~~~~~~~~f~~~~~~ 87 (126)
T cd04688 65 NIFTYNGKPGHEIEFYYLVTLLD 87 (126)
T ss_pred EeeccCCcccEEEEEEEEEEeCC
Confidence 12345666555777888888743
No 24
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.48 E-value=3.1e-13 Score=107.07 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
|.+++|+.++|++|+.+|+.. + .+.|++|||++++|||+++|+.||++||+|+.+..
T Consensus 1 ~~v~~ii~~~~~vLlv~r~~~--~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 57 (134)
T cd03675 1 VTVAAVVERDGRFLLVEEETD--G--GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEP 57 (134)
T ss_pred CeEEEEEEECCEEEEEEEccC--C--CceEECCCccCCCCCCHHHHHHHHHHHHHCccccc
Confidence 345566677889999988743 2 46899999999999999999999999999999864
No 25
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.48 E-value=4e-13 Score=104.36 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=48.0
Q ss_pred EEEEEEEEecC---CcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 135 NVVTVRIIGKD---NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 135 ~Vvva~I~~~~---GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
..|.|+|++.+ ++||+.+|. .+ +.|.||||++++|||+++|+.||++||+|+.+...
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~--~~----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~ 61 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRP--RG----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG 61 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcC--CC----CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec
Confidence 34566677765 899999885 22 68999999999999999999999999999987643
No 26
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4.7e-13 Score=103.15 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 139 VRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 139 a~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
++|+-++|++|+.+|... ...+.|.+|||++++|||+++|+.||++||+|+.+...
T Consensus 4 ~~ii~~~~~vLl~~r~~~---~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~ 59 (122)
T cd04673 4 GAVVFRGGRVLLVRRANP---PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG 59 (122)
T ss_pred EEEEEECCEEEEEEEcCC---CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec
Confidence 333334589999988632 23578999999999999999999999999999998743
No 27
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.46 E-value=6.1e-13 Score=104.54 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=45.0
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
-|.+|+.++|++|+.+|. . .+.|.+|||++++|||+.+|+.||++||+|+.+...
T Consensus 3 ~~~~vi~~~~~vLlv~~~--~----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~ 57 (125)
T cd04689 3 RARAIVRAGNKVLLARVI--G----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG 57 (125)
T ss_pred EEEEEEEeCCEEEEEEec--C----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc
Confidence 334444467899998875 2 247999999999999999999999999999998744
No 28
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=9e-13 Score=101.27 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=47.5
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.|.++|.|.+|++|+.+|. .+ +.|.+|||++++|||+++|++||++||+|+.+..
T Consensus 4 ~v~~ii~~~~~~vLl~~r~--~~----~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~ 58 (129)
T cd04676 4 GVTAVVRDDEGRVLLIRRS--DN----GLWALPGGAVEPGESPADTAVREVREETGLDVEV 58 (129)
T ss_pred eEEEEEECCCCeEEEEEec--CC----CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEe
Confidence 4556667888999999986 22 7899999999999999999999999999998763
No 29
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=1.3e-13 Score=106.94 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=49.8
Q ss_pred EEEEEEEecCCcEEEEeecccCCCc-ccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGS-VRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~-vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+|+++|.+++|++|+.+|. ..+. .++.|+||||++++|||+++|+.||++||+|+.+.
T Consensus 3 ~v~~vv~~~~~~iLl~kr~--~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~ 61 (129)
T cd04699 3 AVAALIVKDVGRILILKRS--KDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVT 61 (129)
T ss_pred eEEEEEECCCCcEEEEEec--CCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEE
Confidence 4555666777999999987 5554 37899999999999999999999999999999876
No 30
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.46 E-value=4.8e-13 Score=108.70 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=45.7
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|+++|++++|+||+.+|+. + .+.|++|||++|+|||+++|++|||+||+|+.+.
T Consensus 10 v~~vi~~~~~~vLl~~r~~--~---~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (148)
T PRK09438 10 VLVVIYTPDLGVLMLQRAD--D---PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVL 63 (148)
T ss_pred EEEEEEeCCCeEEEEEecC--C---CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcc
Confidence 3445667899999988862 1 2579999999999999999999999999999984
No 31
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=8.7e-13 Score=106.18 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=56.4
Q ss_pred EEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc-CCceEEeeCCCcccccccccCC
Q 048617 139 VRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN-DSITVRIVPGSYSKKLDERNSL 217 (281)
Q Consensus 139 a~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~-~~~~V~Vl~gsy~~~~e~r~S~ 217 (281)
++|+.++|+||+-+|.. . +.|.+|||++++|||+++|++||++||+|+.+. ....+.... .....
T Consensus 4 ~~ii~~~~~vLLv~~~~--~----~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~--------~~~~~ 69 (131)
T cd04686 4 RAIILQGDKILLLYTKR--Y----GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYT--------ERRPW 69 (131)
T ss_pred EEEEEECCEEEEEEEcC--C----CcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEE--------eeccc
Confidence 33444568999988752 1 379999999999999999999999999999863 222222221 11112
Q ss_pred CCCCC-ccEEEEEEEEEEecC
Q 048617 218 SYPGL-PARYVLHSVDAFVDG 237 (281)
Q Consensus 218 SYPGL-~vryvLh~v~a~V~G 237 (281)
.|++- ......+.|.|.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd04686 70 RKPDADIFHMISYYYLCEVDA 90 (131)
T ss_pred cCCCCceeEEEEEEEEEEEcC
Confidence 34432 334566778888744
No 32
>PRK08999 hypothetical protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=121.05 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=72.8
Q ss_pred eeEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccc
Q 048617 131 VRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKK 210 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~ 210 (281)
++.+++++++|.+.+|++|+.+|. .+|...+.|+||||++++||++++|+.||++||+|+.+.....+
T Consensus 2 ~~~~~~~~~vi~~~~~~vLL~kR~--~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l---------- 69 (312)
T PRK08999 2 MKRIHVAAGVIRDADGRILLARRP--EGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPL---------- 69 (312)
T ss_pred CceeEEEEEEEECCCCeEEEEEec--CCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeE----------
Confidence 456888999998888999999997 66778899999999999999999999999999999987632221
Q ss_pred cccccCCCCCCCccEEEEEEEEEEe-cCCC
Q 048617 211 LDERNSLSYPGLPARYVLHSVDAFV-DGLP 239 (281)
Q Consensus 211 ~e~r~S~SYPGL~vryvLh~v~a~V-~GlP 239 (281)
....|.|++.. +.+|.|.|.. .+.+
T Consensus 70 --~~~~h~~~~~~--~~i~~y~~~~~~~~~ 95 (312)
T PRK08999 70 --ITVRHDYPDKR--VRLDVRRVTAWQGEP 95 (312)
T ss_pred --EEEEEEcCCCe--EEEEEEEEEEecCcc
Confidence 12346677765 6677777653 4443
No 33
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=8e-13 Score=102.13 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=61.1
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccccccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERN 215 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~ 215 (281)
+++++|++.+|++|+.+|. . .+.|.||||++++||++++|+.||++||+|+.+..+ .+..+ +. ....
T Consensus 2 ~~~~~v~~~~~~vLl~~r~--~----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~-~~~~~-~~-----~~~~ 68 (118)
T cd04690 2 IAAALILVRDGRVLLVRKR--G----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPD-SLEYL-GT-----FRAP 68 (118)
T ss_pred eEEEEEEecCCeEEEEEEC--C----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChh-heEEE-EE-----Eecc
Confidence 4667778889999998775 2 357999999999999999999999999999987641 12221 11 1112
Q ss_pred CCCCCCCccEEEEEEEEEEecC
Q 048617 216 SLSYPGLPARYVLHSVDAFVDG 237 (281)
Q Consensus 216 S~SYPGL~vryvLh~v~a~V~G 237 (281)
...+++ ..+.++.+.|.+.+
T Consensus 69 ~~~~~~--~~~~~~~f~~~~~~ 88 (118)
T cd04690 69 AANEPG--VDVRATVYVAELTG 88 (118)
T ss_pred cccCCC--cEEEEEEEEEcccC
Confidence 233444 34677777776654
No 34
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.2e-12 Score=103.07 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=43.3
Q ss_pred EEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 140 RIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 140 ~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
+|.+ +|++|+.+|.. +++|.+|||++++|||+++|+.||++||+|+.+...
T Consensus 8 ~i~~-~~~vLL~~~~~------~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~ 58 (123)
T cd04672 8 AIFK-DGKILLVREKS------DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR 58 (123)
T ss_pred EEEE-CCEEEEEEEcC------CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe
Confidence 3444 48999988862 578999999999999999999999999999987543
No 35
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.43 E-value=1.1e-12 Score=104.26 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=49.7
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.|++++++++|++|+.+|. ..+..++.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 4 ~v~v~~~~~~~~iLl~~~~--~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~ 61 (137)
T cd03424 4 AVAVLPYDDDGKVVLVRQY--RPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAG 61 (137)
T ss_pred EEEEEEEcCCCeEEEEEee--ecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4667788888999998765 344456789999999999999999999999999999986
No 36
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1.8e-12 Score=101.75 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=46.5
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.|+++|.+.+|++|+.+|. .. ++|.+|||++++|||+++|+.||++||+|+.+..
T Consensus 9 ~~~~~v~~~~~~vLL~~r~--~~----~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 9 GAGVILLNEQGEVLLQKRS--DT----GDWGLPGGAMELGESLEETARRELKEETGLEVEE 63 (132)
T ss_pred ceEEEEEeCCCCEEEEEec--CC----CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeee
Confidence 3444456777999998886 22 6899999999999999999999999999999874
No 37
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.41 E-value=1.4e-12 Score=103.45 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=59.5
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccccccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERN 215 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~ 215 (281)
+..|+|.++ |++|+.+|+. ++ -.+.|.+|||++++|||+++|++||++||+|+.+...+.+. ..
T Consensus 3 ~~~~~i~~~-~~vLL~~r~~--~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~------------~~ 66 (137)
T cd03427 3 TTLCFIKDP-DKVLLLNRKK--GP-GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVG------------II 66 (137)
T ss_pred EEEEEEEEC-CEEEEEEecC--CC-CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEE------------EE
Confidence 445556655 8999999973 22 46789999999999999999999999999999987443221 11
Q ss_pred CCCCCCCccEEEEEEEEEEe
Q 048617 216 SLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 216 S~SYPGL~vryvLh~v~a~V 235 (281)
...+++......+|.+.|..
T Consensus 67 ~~~~~~~~~~~~~~~f~~~~ 86 (137)
T cd03427 67 KFPFPGEEERYGVFVFLATE 86 (137)
T ss_pred EEEcCCCCcEEEEEEEEECC
Confidence 12233323457777777764
No 38
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.41 E-value=1.7e-12 Score=104.76 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=48.2
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+|.+.|.+.++++|+.+|..++ .++|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~----~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP----PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVK 57 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC----CCcCcCCcccccCCCCHHHHHhhhhhhccCceee
Confidence 3556677887899999886443 5689999999999999999999999999999976
No 39
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.40 E-value=3.5e-13 Score=111.91 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=47.7
Q ss_pred EEEEEEEEecC-CcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 135 NVVTVRIIGKD-NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 135 ~Vvva~I~~~~-GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
-|++|+|++++ |++|+.+|. ..+ .|+|||||+++|||+++|++||++||+|+.+.
T Consensus 2 p~~gaii~~~~~~~vLLvr~~--~~~----~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~ 57 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGW--KSK----SWSFPKGKINKDEDDHDCAIREVYEETGFDIS 57 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEec--CCC----CEECCCccCCCCcCHHHHHHHHHHHhhCccce
Confidence 47888888875 699998775 222 79999999999999999999999999999876
No 40
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=2.2e-12 Score=104.95 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=49.8
Q ss_pred EEEEEEEecC---CcEEEEeecccCCCcccccCCC-CCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKD---NQILVESHQELSDGSVRNRCRP-LAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~---GriLIe~RqefpgG~vR~RWEf-PGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+|.+.|+|++ |++|+.+|.. .+....+.|++ |||++++|||+++|+.||++||+|+.+..
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~-~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~ 67 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSA-NKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSA 67 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCC-CCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCCh
Confidence 5556778877 9999999972 12346789998 69999999999999999999999998753
No 41
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.39 E-value=4.2e-12 Score=103.81 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=48.9
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.|.++|+|++|++|+.+|...+ +.|.+|||++++||++.+|+.||++||+|+.+..
T Consensus 5 ~v~~ii~~~~~~vLL~~r~~~~-----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~ 60 (147)
T cd03671 5 NVGVVLFNEDGKVFVGRRIDTP-----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDS 60 (147)
T ss_pred eEEEEEEeCCCEEEEEEEcCCC-----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCc
Confidence 5667778899999999886322 7899999999999999999999999999999763
No 42
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=2.8e-12 Score=104.98 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=48.0
Q ss_pred EEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 133 TVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 133 ~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.+.||+|+|...+| +|+-+|+..+ -.+.|+||||++++|||+++|+.||++||+|+.+..
T Consensus 3 p~~~av~vl~~~~~-~lL~~r~~~~---~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 3 PLPVVVALLPVDDG-LLVIRRGIEP---GRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CcEEEEEEEEECCC-EEEEEeecCC---CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 45677777777776 5555665333 267899999999999999999999999999999864
No 43
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.1e-12 Score=103.73 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=49.2
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCC-CcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPL-AEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfP-GGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+|.++|++++|+||+.+|... +....+.|.+| |||+++|||+ +|++||++||+|+.+..
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~-~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~ 61 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPN-KDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDF 61 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCC-CCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcCh
Confidence 456678899999999888731 22256789997 9999999999 99999999999999763
No 44
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.38 E-value=4e-12 Score=101.52 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=47.1
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+++++|+..+|+||+.+|...+ -.+.|++|||++++|||+++|+.||++||+|+.+..
T Consensus 14 ~~v~~ii~~~~~vLL~kr~~~~---~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 14 IIVGCVPEWEGKVLLCRRAIEP---RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEI 71 (130)
T ss_pred EEEEEEEecCCEEEEEEecCCC---CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEe
Confidence 4444444556899999987432 357899999999999999999999999999998763
No 45
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.38 E-value=9.7e-13 Score=107.70 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=53.1
Q ss_pred eeEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 131 VRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
.+++..|.++|++.+|++|+.+|. .+..++.|.+|||++++|||+++|++||++||+|+.+...
T Consensus 10 ~~~~~av~~vv~~~~~~vLL~~r~---~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~ 73 (142)
T cd04700 10 EVEARAAGAVILNERNDVLLVQEK---GGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV 73 (142)
T ss_pred ceeeeeEEEEEEeCCCcEEEEEEc---CCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc
Confidence 345667777788889999998774 2224688999999999999999999999999999998743
No 46
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.38 E-value=1.6e-12 Score=105.30 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=41.8
Q ss_pred cCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 144 KDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 144 ~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+++++|+.+|. .++ .+.|.|||||||+|||+++|+.|||+||+|+.+.
T Consensus 11 ~~~~~Llvk~~--~~~--~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 11 DDTLVLLVQQK--VGS--QNHWILPQGKREEGETLRQTAERTLKELCGNNLK 58 (132)
T ss_pred cCcEEEEEEee--cCC--CCeeECCcccccCCCCHHHHHHHHHHHhhCCCce
Confidence 45689999885 222 5799999999999999999999999999999876
No 47
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.37 E-value=5.4e-12 Score=105.63 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCC-CcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPL-AEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfP-GGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.+|+++|++++|+||+.+|.. ..-...+.|.+| ||++++|||+++|+.||++||+|+.+..
T Consensus 31 ~~v~v~i~~~~~~iLl~kR~~-~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~ 92 (165)
T cd02885 31 RAFSVFLFNSKGRLLLQRRAL-SKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDL 92 (165)
T ss_pred eEEEEEEEcCCCcEEEEeccC-CCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 355566789999999999862 222467889886 9999999999999999999999999763
No 48
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.37 E-value=4.1e-12 Score=105.80 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=46.3
Q ss_pred EEEEecC--CcEEEEeecccCCC-cccccCCCCCcccCCC-CCHHHHHHHHHHHHhCccccC
Q 048617 139 VRIIGKD--NQILVESHQELSDG-SVRNRCRPLAEKMKSN-ETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 139 a~I~~~~--GriLIe~RqefpgG-~vR~RWEfPGGKvepG-Et~eeAl~REi~EELGi~v~~ 196 (281)
+.|.+.+ ++||+.+|. .+. ..++.|.+||||+++| ||+++|+.||++||+|+.+..
T Consensus 7 v~l~~~~~~~~vLL~~R~--~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~ 66 (157)
T cd03426 7 VLLVEREGELRVLLTKRA--SHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDS 66 (157)
T ss_pred EEEEeCCCceEEEEEEcc--cccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccc
Confidence 3445554 699999997 322 3678899999999999 999999999999999999763
No 49
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=6.6e-12 Score=100.02 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=48.5
Q ss_pred EEEEEEecCCcEEEEeecccCCC-cccccCCC-CCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDG-SVRNRCRP-LAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG-~vR~RWEf-PGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+-++|.|++|+||+.+|. ..+ ...++|++ |||++++||++++|+.||++||+|+.+.
T Consensus 3 ~~v~i~~~~~~iLl~~R~--~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~ 61 (126)
T cd04697 3 TYIFVFNSEGKLCVHKRT--LTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV 61 (126)
T ss_pred EEEEEEcCCCeEEEEECC--CCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 456788999999998876 333 35678988 7999999999999999999999999875
No 50
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.35 E-value=6.8e-12 Score=98.46 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=43.9
Q ss_pred EEEEEEecCC---cEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 137 VTVRIIGKDN---QILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 137 vva~I~~~~G---riLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
+.++|++.++ ++|+-+|.. ++|.+|||++++|||+++|+.||++||+|+.+..
T Consensus 5 ~g~vi~~~~~~~~~vLl~~~~~-------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 60 (130)
T cd03428 5 AGAIIYRRLNNEIEYLLLQASY-------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQ 60 (130)
T ss_pred EEEEEEEecCCCceEEEEEccC-------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhh
Confidence 3444444443 799988862 7899999999999999999999999999999873
No 51
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.34 E-value=9.4e-12 Score=116.71 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=61.9
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDER 214 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r 214 (281)
.|.+.+|+..+|+||+-+|..-++ .+.|.+|||++++|||+++|+.||++||+|+.+....-. +.+ ...
T Consensus 203 ~vtv~avv~~~g~VLLvrR~~~p~---~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~----~~~----~~~ 271 (340)
T PRK05379 203 FVTVDAVVVQSGHVLLVRRRAEPG---KGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLR----GSI----RDQ 271 (340)
T ss_pred ceEEEEEEEECCEEEEEEecCCCC---CCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccc----eee----eee
Confidence 355555556788999999874333 689999999999999999999999999999987633111 110 011
Q ss_pred cCCCCCCC--ccEEEEEEEEEEe
Q 048617 215 NSLSYPGL--PARYVLHSVDAFV 235 (281)
Q Consensus 215 ~S~SYPGL--~vryvLh~v~a~V 235 (281)
.-.+||+. ..+...|.+.|.+
T Consensus 272 ~~f~~p~r~~~~~~i~~~f~~~~ 294 (340)
T PRK05379 272 QVFDHPGRSLRGRTITHAFLFEF 294 (340)
T ss_pred EEEcCCCCCCCCcEEEEEEEEEe
Confidence 12345543 3356677777766
No 52
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.33 E-value=3e-12 Score=103.69 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=46.3
Q ss_pred EEEEEEEecC-CcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKD-NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~-GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.++|+|+|++ |+||+.+|.. .+.|.+|||||++|||+++|+.||++||+|+.+.
T Consensus 4 ~~~~~v~~~~~~~vLLv~r~~------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHRK------LGSWLQPGGHIDPDESLLEAALRELREETGIELL 58 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEcC------CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence 3456667777 9999998862 3679999999999999999999999999999865
No 53
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=1e-11 Score=101.95 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=48.6
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSIL 194 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v 194 (281)
+.++|++.+|+||+.+|.. +.+...+.|.+|||.+++|||+++|+.||++||+|+.+
T Consensus 3 ~~~~i~~~~g~vLl~r~~~-~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 3 ARVVLLDPDDRVLLLRGDD-PDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred EEEEEEcCCCeEEEEEEeC-CCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 4567889999999987652 32235678999999999999999999999999999998
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.30 E-value=2.4e-11 Score=104.24 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=47.4
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccC-CCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRC-RPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RW-EfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.++.++|.|++|+||+.+|.. .+....+.| .+|||++++|||+++|+.||++||+|+.+.
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~-~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~ 98 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTE-TKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGV 98 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCC-CCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 345566788899999988862 222234556 689999999999999999999999999754
No 55
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.29 E-value=3.7e-11 Score=102.85 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=46.0
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCC-CcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPL-AEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfP-GGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
++.++|++.+|+||+.+|.. ..-.+.+.|.+| ||++++|||+++|+.||++||+|+.+.
T Consensus 36 av~v~i~~~~g~vLL~rR~~-~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 36 AFSCYLFDADGRLLVTRRAL-SKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred EEEEEEEcCCCeEEEEEccC-CCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 33455778899999998852 111244567654 899999999999999999999999875
No 56
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=7.2e-12 Score=100.18 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=45.0
Q ss_pred EEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 140 RIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 140 ~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
...+.++++|+.+|.. + .++.|.+||||+++|||+++|+.||++||+|+.+.
T Consensus 8 ~~~~~~~~vLl~~r~~---~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 59 (131)
T cd04695 8 RSLDKETKVLLLKRVK---T-LGGFWCHVAGGVEAGETAWQAALRELKEETGISLP 59 (131)
T ss_pred EEcCCCCEEEEEEecC---C-CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcc
Confidence 3345778999999962 2 56889999999999999999999999999999976
No 57
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.27 E-value=5.9e-12 Score=97.01 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=50.0
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.|.++|.+.+|++|+-+|..-+ ....+.|.+|||++++|||+.+|++||++||+|+.+.
T Consensus 4 ~v~~ii~~~~~~vLl~~r~~~~-~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~ 62 (134)
T PF00293_consen 4 AVGVIIFNEDGKVLLIKRSRSP-ITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVS 62 (134)
T ss_dssp EEEEEEEETTTEEEEEEESTTS-SSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEE
T ss_pred EEEEEEEeCCcEEEEEEecCCC-CCCCCeEecceeeEEcCCchhhhHHhhhhhcccceec
Confidence 3556788888999999987221 1367899999999999999999999999999999985
No 58
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.3e-11 Score=95.84 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=45.0
Q ss_pred EEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 138 TVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 138 va~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+++|...+|++|+-+|. .++|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 3 a~~i~~~~~~vLlv~r~-------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~ 53 (112)
T cd04667 3 ATVICRRGGRVLLVRKS-------GSRWALPGGKIEPGETPLQAARRELQEETGLQGL 53 (112)
T ss_pred eEEEEecCCEEEEEEcC-------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCccc
Confidence 45666778899999885 2689999999999999999999999999999865
No 59
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.23 E-value=7.9e-11 Score=95.00 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=44.8
Q ss_pred EEEEEEEecC---CcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCC
Q 048617 136 VVTVRIIGKD---NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 136 Vvva~I~~~~---GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~ 197 (281)
|+.+++.+.+ +++|+-+|+ .+ +.|.+|||+|++|||+++|+.||++||+|+.+...
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~--~~----~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~ 60 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSR--RT----GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIG 60 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEec--CC----CeEECCCCCcCCCCCHHHHHHHHHHHHhCCccccc
Confidence 4455555543 689988775 22 78999999999999999999999999999987643
No 60
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.23 E-value=7.2e-11 Score=98.83 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=47.5
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.|.++|+|.+|++|+.+|.. . .+.|.+|||++++|||+++|+.||++||+|+.+.
T Consensus 10 ~v~~~i~~~~g~vLL~~r~~--~---~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~ 64 (156)
T PRK00714 10 NVGIILLNRQGQVFWGRRIG--Q---GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPE 64 (156)
T ss_pred eEEEEEEecCCEEEEEEEcC--C---CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcc
Confidence 45566888999999998862 1 3679999999999999999999999999999875
No 61
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.23 E-value=7.7e-11 Score=98.67 Aligned_cols=67 Identities=24% Similarity=0.157 Sum_probs=53.7
Q ss_pred eeEEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceE
Q 048617 131 VRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITV 200 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V 200 (281)
.+...+++.+++..+|+||+.+|+.-|. ++.|-+|||++|.|||+++|+.||++||+|+.+..-..+
T Consensus 6 ~~~p~~~v~~~i~~~~~iLLvrR~~~p~---~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~ 72 (145)
T COG1051 6 YRTPLVAVGALIVRNGRILLVRRANEPG---AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELL 72 (145)
T ss_pred CCCcceeeeEEEEeCCEEEEEEecCCCC---CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEE
Confidence 4445566677777777999999984333 366999999999999999999999999999997644343
No 62
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.20 E-value=1.1e-10 Score=97.64 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=46.8
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCC-CcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPL-AEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfP-GGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
.+.++|+|.+|+||+.+|.. ..-...+.|.+| ||++++|| .+|+.||++||||+.+..
T Consensus 29 ~v~v~v~~~~g~vLl~kR~~-~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~ 87 (158)
T TIGR02150 29 AFSVFLFNEEGQLLLQRRAL-SKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADD 87 (158)
T ss_pred EEEEEEEcCCCeEEEEeccC-CCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccc
Confidence 45566778899999998862 222456889886 89999999 499999999999999874
No 63
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.20 E-value=6.6e-11 Score=107.93 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=67.7
Q ss_pred CCCChhhHHHhhcCCCCCCCccccCCCCCcccHhHHHHHhhcCceeeec-CCCCeeE--EEEEEEEEEecCCcEEEEeec
Q 048617 78 SFATPQSLSDWLKPRLPSDSFASWGVKPGTKNVHNLWLELSDGETCLAD-AIPPVRT--VNVVTVRIIGKDNQILVESHQ 154 (281)
Q Consensus 78 ~f~~~~sL~~wLk~rl~~~~~~~wG~~pgtK~v~~L~~El~~get~L~d-s~~p~R~--V~Vvva~I~~~~GriLIe~Rq 154 (281)
.++++.+|..|.+.+ .|=-.=|+++.. .+++..+.- +..-.-+ +..++.+++.++++||+.+|.
T Consensus 85 ~~~~a~~l~~w~~~~-------~fC~~CG~~~~~------~~~~~~~~C~~c~~~~yp~~~paViv~V~~~~~iLL~rr~ 151 (256)
T PRK00241 85 LLGRAVQLAEFYRSH-------RFCGYCGHPMHP------SKTEWAMLCPHCRERYYPRIAPCIIVAVRRGDEILLARHP 151 (256)
T ss_pred HHHHHHHHHHHhhcC-------ccccccCCCCee------cCCceeEECCCCCCEECCCCCCEEEEEEEeCCEEEEEEcc
Confidence 345688899999887 332233444332 245555532 2221111 112233344556899999887
Q ss_pred ccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 155 ELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 155 efpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.++ .+.|.+|||++|+|||+++|++|||+||+|+.+.
T Consensus 152 ~~~----~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~ 188 (256)
T PRK00241 152 RHR----NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVK 188 (256)
T ss_pred CCC----CCcEeCcccCCCCCCCHHHHhhhhhhhccCceee
Confidence 665 4689999999999999999999999999999876
No 64
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.19 E-value=4.1e-11 Score=99.92 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=49.7
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
|+++|+|.+|++|+.+|..- .....+.|.+|||++++||++++|+.||++||+|+.+..
T Consensus 4 v~viv~~~~~~vLl~rr~~~-~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~ 62 (143)
T cd04694 4 VAVLLQSSDQKLLLTRRASS-LRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDP 62 (143)
T ss_pred EEEEEEcCCCEEEEEEECCC-CCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccc
Confidence 44455789999999999732 224678999999999999999999999999999998763
No 65
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.17 E-value=1.5e-10 Score=94.19 Aligned_cols=48 Identities=31% Similarity=0.296 Sum_probs=41.0
Q ss_pred EEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 141 IIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 141 I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
|...++++|+.+|. +++|++||||+++||++++|+.||++||+|+.+.
T Consensus 6 i~~~~~~vLl~~~~-------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~ 53 (118)
T cd04665 6 ICFYDDGLLLVRHK-------DRGWEFPGGHVEPGETIEEAARREVWEETGAELG 53 (118)
T ss_pred EEEECCEEEEEEeC-------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 33445789888764 3579999999999999999999999999999985
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.16 E-value=3e-10 Score=84.70 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=47.6
Q ss_pred EEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 137 VTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 137 vva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
+.++|.+.++++|+.+|. .+ ..++|.+|||++++||++.+|+.||++||+|+.+.
T Consensus 3 ~~~i~~~~~~~ill~kr~--~~--~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 3 VGAVILDEDGRVLLVRRA--DS--PGGLWELPGGGVEPGETLEEAAIREVREETGLDVD 57 (123)
T ss_pred eEEEEECCCCCEEEEEEc--CC--CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccce
Confidence 445666777899999886 22 67899999999999999999999999999999875
No 67
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.15 E-value=3.9e-10 Score=85.92 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDER 214 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r 214 (281)
.+++++| ..+|++|+.+|+ .+|-+++.|+|||+|++.+|+.++++.|++.||+++... . ...
T Consensus 4 ~~~~~ii-~~~~~~ll~kR~--~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~ 65 (118)
T cd03431 4 GIAVVVI-RNDGRVLLEKRP--EKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLE---P------------LGT 65 (118)
T ss_pred EEEEEEE-ecCCeEEEEECC--CCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcccc---c------------cee
Confidence 3444555 447899999998 789999999999999999999999999999999864111 0 123
Q ss_pred cCCCCCCCccEEEEEEEEEEec
Q 048617 215 NSLSYPGLPARYVLHSVDAFVD 236 (281)
Q Consensus 215 ~S~SYPGL~vryvLh~v~a~V~ 236 (281)
..|.|++.. +.|+.+.|.+.
T Consensus 66 ~~H~fth~~--~~~~~~~~~~~ 85 (118)
T cd03431 66 VKHTFTHFR--LTLHVYLARLE 85 (118)
T ss_pred EEEecCCeE--EEEEEEEEEEe
Confidence 457888877 78888888763
No 68
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.13 E-value=3.5e-10 Score=97.35 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=56.0
Q ss_pred cCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccccCCCCCCCc
Q 048617 144 KDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLP 223 (281)
Q Consensus 144 ~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~S~SYPGL~ 223 (281)
.++++|+.++. +..|++||||+|+|||+++|+.||++||+|..+.. ++.+ +.|. .+. +.
T Consensus 33 ~~~~~LL~~~~-------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~---~~~l-g~~~--------~~~-~~- 91 (156)
T TIGR02705 33 YKDQWLLTEHK-------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKE---LHYI-GQYE--------VEG-ES- 91 (156)
T ss_pred ECCEEEEEEEc-------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeee---eEEE-EEEE--------ecC-CC-
Confidence 34478887664 24599999999999999999999999999998762 2222 2222 222 22
Q ss_pred cEEEEEEEEEEec-CCCCCCCcccc
Q 048617 224 ARYVLHSVDAFVD-GLPEEGEFCTE 247 (281)
Q Consensus 224 vryvLh~v~a~V~-GlPe~~eF~Te 247 (281)
.....+.|.|++. +.+.++.+.|.
T Consensus 92 ~~~~~~vf~A~~~~~~~~~e~~E~~ 116 (156)
T TIGR02705 92 TDFVKDVYFAEVSALESKDDYLETK 116 (156)
T ss_pred cEEEEEEEEEEEeccccCCCceeeE
Confidence 3578888888874 55542333333
No 69
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.10 E-value=4.3e-10 Score=96.33 Aligned_cols=52 Identities=29% Similarity=0.292 Sum_probs=43.4
Q ss_pred EecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 142 IGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 142 ~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
++++|++|+-++. -.|.-+..|++|||++++||++++|++||++||+|+.+.
T Consensus 55 ~~~~~~vlLvrq~--r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~ 106 (185)
T PRK11762 55 ILDDDTLLLIREY--AAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGAR 106 (185)
T ss_pred EeCCCEEEEEEee--cCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 4577888887664 334445669999999999999999999999999999976
No 70
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.06 E-value=3.4e-10 Score=84.47 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=40.7
Q ss_pred CcEEEEeecccCCCcccccCCCCCcccCCCCCHHH-HHHHHHHHHhCcccc
Q 048617 146 NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEE-AVIRAVKEELGSILN 195 (281)
Q Consensus 146 GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~ee-Al~REi~EELGi~v~ 195 (281)
+++|+.+|+ ..+ +.|.||||++++||++.+ |++||+.||+|+.+.
T Consensus 24 ~~vl~~~~~--~~~---~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRR--DDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEcc--ccC---CceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 799999887 333 799999999999999988 999999999999987
No 71
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.99 E-value=2.1e-09 Score=89.63 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=41.3
Q ss_pred EEEEEEecCC--cEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccc
Q 048617 137 VTVRIIGKDN--QILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSIL 194 (281)
Q Consensus 137 vva~I~~~~G--riLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v 194 (281)
|.|+|.+.++ ++|+-++. . +.|++|||++++|||+++|+.||++||+|+.+
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~---~----~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP---L----AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC---C----CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4456666655 77776443 2 45999999999999999999999999999996
No 72
>PLN03143 nudix hydrolase; Provisional
Probab=98.98 E-value=1.4e-09 Score=101.98 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=61.8
Q ss_pred CccccCCCCCcccHhHHHHHhhcCceeeecCCCCeeEEEEEEEEEEecCCc--EEEEeecccCCCcccccCCCCCcccCC
Q 048617 97 SFASWGVKPGTKNVHNLWLELSDGETCLADAIPPVRTVNVVTVRIIGKDNQ--ILVESHQELSDGSVRNRCRPLAEKMKS 174 (281)
Q Consensus 97 ~~~~wG~~pgtK~v~~L~~El~~get~L~ds~~p~R~V~Vvva~I~~~~Gr--iLIe~RqefpgG~vR~RWEfPGGKvep 174 (281)
+.+.||..-|--+|..--.++..|++ +.. .--.|.-.|++.++++.+|+ +++.++-+++-|.. -||||||++++
T Consensus 94 ~vd~fg~~~gflkv~~d~~~l~~G~~-~~~-~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~--~lE~PAG~lD~ 169 (291)
T PLN03143 94 GVDMFGKRIGFLKFKADIIDKETGQK-VPG-IVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKF--VLELPAGMLDD 169 (291)
T ss_pred EEecccCceeEEEEEEEEEECCCCCE-eeE-EEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcE--EEEecccccCC
Confidence 66788876665444443334444432 110 00011112344444455566 66766667777765 68999999998
Q ss_pred -CCCHHHHHHHHHHHHhCccccCC
Q 048617 175 -NETPEEAVIRAVKEELGSILNDS 197 (281)
Q Consensus 175 -GEt~eeAl~REi~EELGi~v~~~ 197 (281)
+|++++|..||++||+|+.+..+
T Consensus 170 ~~edp~~aA~REL~EETG~~~~a~ 193 (291)
T PLN03143 170 DKGDFVGTAVREVEEETGIKLKLE 193 (291)
T ss_pred CCCCHHHHHHHHHHHHHCCccccc
Confidence 58999999999999999987543
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.94 E-value=4.8e-09 Score=88.83 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=49.7
Q ss_pred eeEEEEEEEEEEecC--CcEEEEeecccCCCcccccC-CCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 131 VRTVNVVTVRIIGKD--NQILVESHQELSDGSVRNRC-RPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~--GriLIe~RqefpgG~vR~RW-EfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
-|.|||.+- +.|.+ |++|+.+|.. ..-...+.| ..|||.+++|||+++|+.||++||+|+.+.
T Consensus 32 h~~v~~~~~-~~~~~~~~~l~lqrRs~-~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~ 97 (180)
T cd03676 32 TYGVHLNGY-VRDEDGGLRIWIPRRSP-TKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPED 97 (180)
T ss_pred EEEEEEEEE-EEcCCCCeEEEEEeccC-CCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHH
Confidence 455555433 34665 8999999973 223356889 799999999999999999999999999876
No 74
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.90 E-value=7.2e-09 Score=90.71 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=43.7
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCC-CCHHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSN-ETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepG-Et~eeAl~REi~EELGi~v~ 195 (281)
|+++++-+.++.+|+.+|.. .-..-.+.|+|||||+|+| |++++|+.||++||+|+...
T Consensus 34 vvl~l~~~~~~~vLl~~R~~-~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~ 93 (190)
T PRK10707 34 VLIPIVRRPQPTLLLTQRSI-HLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPS 93 (190)
T ss_pred EEEEEEECCCCEEEEEEeCC-cccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCcc
Confidence 33333334456999998862 1112356789999999985 68999999999999999865
No 75
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.90 E-value=9.8e-09 Score=90.62 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=55.1
Q ss_pred EEEEEEec-CCcEEEEeecccCCCc---ccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccc
Q 048617 137 VTVRIIGK-DNQILVESHQELSDGS---VRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLD 212 (281)
Q Consensus 137 vva~I~~~-~GriLIe~RqefpgG~---vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e 212 (281)
|+++.+++ ++++|+-+.-+++-+. -+--||+|+|++++||++++|+.|||+||+|..+. .+..+ .
T Consensus 52 V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~---~~~~l-~------- 120 (202)
T PRK10729 52 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVG---RTKPV-L------- 120 (202)
T ss_pred EEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceee---EEEEE-E-------
Confidence 33444554 4676665333444321 12347999999999999999999999999999865 22222 1
Q ss_pred cccCCCCCCCccEEEEEEEEEEec
Q 048617 213 ERNSLSYPGLPARYVLHSVDAFVD 236 (281)
Q Consensus 213 ~r~S~SYPGL~vryvLh~v~a~V~ 236 (281)
.. +.-||+. .-.+|.|.|++.
T Consensus 121 -~~-~~spg~~-~e~~~~fla~~~ 141 (202)
T PRK10729 121 -SY-LASPGGT-SERSSIMVGEVD 141 (202)
T ss_pred -EE-EcCCCcC-ceEEEEEEEEEc
Confidence 11 2235553 267778878763
No 76
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.89 E-value=7.2e-09 Score=90.11 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=55.6
Q ss_pred EEEEEec-CCcEEEEeecccCC---CcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccccc
Q 048617 138 TVRIIGK-DNQILVESHQELSD---GSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDE 213 (281)
Q Consensus 138 va~I~~~-~GriLIe~Rqefpg---G~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~ 213 (281)
++++.+. ++++|+-++-+.+= |.-..-|++|||++++|||+++|+.|||+||+|..+.. +..+.
T Consensus 48 ~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~---~~~~~--------- 115 (185)
T TIGR00052 48 AVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKN---LRKLL--------- 115 (185)
T ss_pred EEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecc---eEEEE---------
Confidence 3444444 46788764433322 11234679999999999999999999999999999762 22221
Q ss_pred ccCCCCCCCccEEEEEEEEEEecC
Q 048617 214 RNSLSYPGLPARYVLHSVDAFVDG 237 (281)
Q Consensus 214 r~S~SYPGL~vryvLh~v~a~V~G 237 (281)
.-+.-||.. ...+|.|.|++.+
T Consensus 116 -~~~~~~g~~-~~~~~~f~a~~~~ 137 (185)
T TIGR00052 116 -SFYSSPGGV-TELIHLFIAEVDD 137 (185)
T ss_pred -EEEcCCCCC-cEEEEEEEEEEch
Confidence 112235543 3667788887643
No 77
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.74 E-value=1.8e-08 Score=84.44 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=39.4
Q ss_pred CcEEEEeeccc-CCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 146 NQILVESHQEL-SDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 146 GriLIe~Rqef-pgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.++|+.+|... .-..-.+.|++|||+++.||++++|++||++||+|+.+.
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 46888765311 011235679999999999999999999999999999876
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.55 E-value=2.6e-07 Score=86.90 Aligned_cols=103 Identities=30% Similarity=0.335 Sum_probs=71.4
Q ss_pred CChhhHHHhhcCCCCCCCccccCCCCCcccHhHHHHHhhcCceeee-cCCC---CeeEEEEEEEEEEecCCcEEEEeecc
Q 048617 80 ATPQSLSDWLKPRLPSDSFASWGVKPGTKNVHNLWLELSDGETCLA-DAIP---PVRTVNVVTVRIIGKDNQILVESHQE 155 (281)
Q Consensus 80 ~~~~sL~~wLk~rl~~~~~~~wG~~pgtK~v~~L~~El~~get~L~-ds~~---p~R~V~Vvva~I~~~~GriLIe~Rqe 155 (281)
+.+.+|-.|.+.+ +|=-+=|+|+ +..+|+.... .... =.|+==+|.++|++.+ +||+++|+.
T Consensus 99 ~~a~~l~~w~~~~-------RFCg~CG~~~------~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~ 164 (279)
T COG2816 99 ARAVQLLEWYRSH-------RFCGRCGTKT------YPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPR 164 (279)
T ss_pred HHHHHHHHHHhhC-------cCCCCCCCcC------ccccCceeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCC
Confidence 3467888898887 4544566665 5677887773 1111 1222223444455555 499999987
Q ss_pred cCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEee
Q 048617 156 LSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIV 203 (281)
Q Consensus 156 fpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl 203 (281)
+.+| ..-...|=||+|||.|+|++||++||.|+.|. +|++.
T Consensus 165 h~~g----~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~---~vrY~ 205 (279)
T COG2816 165 HFPG----MYSLLAGFVEPGETLEQAVAREVFEEVGIKVK---NVRYV 205 (279)
T ss_pred CCCc----ceeeeeecccCCccHHHHHHHHHHHhhCeEEe---eeeEE
Confidence 7755 44678899999999999999999999999987 45554
No 79
>PLN02791 Nudix hydrolase homolog
Probab=98.51 E-value=8.4e-07 Score=92.71 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=50.6
Q ss_pred CCeeEEEEEEEEEEec-CCcEEEEeecccCCCcccccCCC-CCcccCCCCCHHHHHHHHHHHHhCccccC
Q 048617 129 PPVRTVNVVTVRIIGK-DNQILVESHQELSDGSVRNRCRP-LAEKMKSNETPEEAVIRAVKEELGSILND 196 (281)
Q Consensus 129 ~p~R~V~Vvva~I~~~-~GriLIe~RqefpgG~vR~RWEf-PGGKvepGEt~eeAl~REi~EELGi~v~~ 196 (281)
-.-|.|+| .|.|+ +|++|+.+|. ..+-...+.|.. +||.+++|||.++|+.||++||||+.+..
T Consensus 30 l~HrAvhV---wIfn~~~gelLLQkRS-~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~ 95 (770)
T PLN02791 30 DYHRAVHV---WIYSESTQELLLQRRA-DCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPK 95 (770)
T ss_pred CceEEEEE---EEEECCCCeEEEEEec-CCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCCh
Confidence 34454444 45675 6999999997 244446788977 79999999999999999999999998753
No 80
>PLN02709 nudix hydrolase
Probab=98.49 E-value=8.9e-07 Score=80.62 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=41.5
Q ss_pred CcEEEEeecccCCCcccccCCCCCcccCCC-CCHHHHHHHHHHHHhCcccc
Q 048617 146 NQILVESHQELSDGSVRNRCRPLAEKMKSN-ETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 146 GriLIe~RqefpgG~vR~RWEfPGGKvepG-Et~eeAl~REi~EELGi~v~ 195 (281)
-++|+.+|..-. ....+.|-|||||+|+| +++.+|+.||++||+|+...
T Consensus 51 ~~vLl~~Rs~~l-~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 51 LRVILTKRSSTL-SSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS 100 (222)
T ss_pred eEEEEEEcCCCC-CCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence 379999998422 34689999999999997 57899999999999999865
No 81
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.44 E-value=2.9e-07 Score=88.32 Aligned_cols=57 Identities=30% Similarity=0.296 Sum_probs=48.6
Q ss_pred EEEEEEEEecCCcEEEEeec-ccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 135 NVVTVRIIGKDNQILVESHQ-ELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~Rq-efpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
-||+..|++.+|+.++-.|| ++++| .|--+-|=+|||||.+||++||+.||.|++|+
T Consensus 188 PvVIm~li~~d~~~~LL~R~~r~~~g----l~t~lAGFlEpGES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQKRYPPG----LWTCLAGFLEPGESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred CeEEEEEEcCCCCEeeeecccCCCCc----hhhhhhccCCccccHHHHHHHHHHHHhCceee
Confidence 36667788988866555555 77777 79999999999999999999999999999987
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.36 E-value=7.4e-07 Score=78.90 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=36.4
Q ss_pred cEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccc
Q 048617 147 QILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSIL 194 (281)
Q Consensus 147 riLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v 194 (281)
++|+.+|+. .+.|-+|||++++||++++|+.||++||+|+.+
T Consensus 50 ~vLl~~r~~------~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD------SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC------CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 677777752 367999999999999999999999999997764
No 83
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.31 E-value=4.1e-06 Score=73.66 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=52.7
Q ss_pred EEEEEEec-CCcEEEEeecccCCCc----ccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCccccc
Q 048617 137 VTVRIIGK-DNQILVESHQELSDGS----VRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKL 211 (281)
Q Consensus 137 vva~I~~~-~GriLIe~RqefpgG~----vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~ 211 (281)
|++++.+. ++++|+-+.=+++=-. -+--||+|+|.+++| ++++|++|||+||+|..+.. +..+ +
T Consensus 48 v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~---~~~l-~------ 116 (191)
T PRK15009 48 ATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGE---VRKL-F------ 116 (191)
T ss_pred EEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccce---EEEe-e------
Confidence 34444554 5677665333443100 123469999999976 69999999999999998752 2222 1
Q ss_pred ccccCCCCCCCccEEEEEEEEEEe
Q 048617 212 DERNSLSYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 212 e~r~S~SYPGL~vryvLh~v~a~V 235 (281)
.-++-||+.. -.+|.|.|+.
T Consensus 117 ---~~~~spG~s~-e~~~lf~a~~ 136 (191)
T PRK15009 117 ---ELYMSPGGVT-ELIHFFIAEY 136 (191)
T ss_pred ---EEEcCCcccC-cEEEEEEEEE
Confidence 1244667643 5567777765
No 84
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.26 E-value=1.1e-06 Score=68.90 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=57.1
Q ss_pred EEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccccCC
Q 048617 138 TVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSL 217 (281)
Q Consensus 138 va~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~S~ 217 (281)
|++|++.+|++|+.||+ .+|-+++.|+||.-..+ +++..+++.+.+.+.+|..+...+. .....|
T Consensus 1 ~~~i~~~~~~~Ll~kRp--~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~v~H 65 (114)
T PF14815_consen 1 VLLIIRSQGRVLLEKRP--EKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGLSIRSVEP------------LGTVKH 65 (114)
T ss_dssp EEEEEETTSEEEEEE----SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-EEEE-S-------------SEEEEE
T ss_pred CEEEEEeCCEEEEEECC--CCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCCChhhhee------------cCcEEE
Confidence 46788999999999998 88999999999998887 4555777877787777776542111 345667
Q ss_pred CCCCCccEEEEEEEEEEecCCCC
Q 048617 218 SYPGLPARYVLHSVDAFVDGLPE 240 (281)
Q Consensus 218 SYPGL~vryvLh~v~a~V~GlPe 240 (281)
.+.+.. ..++.+.|.+...+.
T Consensus 66 ~fSH~~--~~~~~~~~~~~~~~~ 86 (114)
T PF14815_consen 66 VFSHRR--WTIHVYEVEVSADPP 86 (114)
T ss_dssp E-SSEE--EEEEEEEEEEE-SS-
T ss_pred EccceE--EEEEEEEEEecCCCC
Confidence 788876 888888888865443
No 85
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.01 E-value=1.5e-05 Score=73.35 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=42.5
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccC-----CCCCcccCCCC----------C---HHHHHHHHHHHHhCcccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRC-----RPLAEKMKSNE----------T---PEEAVIRAVKEELGSILN 195 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RW-----EfPGGKvepGE----------t---~eeAl~REi~EELGi~v~ 195 (281)
++.+.|.|++|++|+.+|.. .+-...+.| --|++-+++|| + ..+|+.|||+||||+.+.
T Consensus 58 a~~v~i~n~~g~lLLQkRs~-~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~ 134 (247)
T PLN02552 58 AFSVFLFNSKYELLLQQRAA-TKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE 134 (247)
T ss_pred EEEEEEEcCCCeEEEEEecC-CCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence 45566889999999999971 122245677 44455555543 2 789999999999999954
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.84 E-value=0.0001 Score=67.59 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=57.7
Q ss_pred EEEEEEEecCCcEEEEeecccCCCcccccC-CCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccc
Q 048617 136 VVTVRIIGKDNQILVESHQELSDGSVRNRC-RPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDER 214 (281)
Q Consensus 136 Vvva~I~~~~GriLIe~RqefpgG~vR~RW-EfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r 214 (281)
|++..|+..||+..|-.-..|-.. +++-+ |+|-|-++.||++++|..|||+||+|..=. +.+- ..
T Consensus 76 VaIl~il~~dG~~~ivL~kQfRpP-~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk------v~~~-------s~ 141 (225)
T KOG3041|consen 76 VAILAILESDGKPYIVLVKQFRPP-TGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK------VDMV-------SP 141 (225)
T ss_pred EEEEEEEecCCcEEEEEEEeecCC-CCcEEEEcccccccCCCchHHHHHHHHHHHhCccce------eeec-------cc
Confidence 556667777887543222223222 34555 999999999999999999999999999821 2211 13
Q ss_pred cCCCCCCCccEEEEEEEEEEecC
Q 048617 215 NSLSYPGLPARYVLHSVDAFVDG 237 (281)
Q Consensus 215 ~S~SYPGL~vryvLh~v~a~V~G 237 (281)
.-+.-|||. ...++-+.+.++|
T Consensus 142 ~~f~DPGlt-n~~~~iv~v~idg 163 (225)
T KOG3041|consen 142 TVFLDPGLT-NCNLCIVVVDIDG 163 (225)
T ss_pred cEEcCCCCC-CCceEEEEEEecC
Confidence 335567773 4667777777766
No 87
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=97.69 E-value=0.00012 Score=63.59 Aligned_cols=58 Identities=22% Similarity=0.150 Sum_probs=44.5
Q ss_pred EEEEEEEEEEecCC---cEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 133 TVNVVTVRIIGKDN---QILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 133 ~V~Vvva~I~~~~G---riLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
...|+.|++...++ ++|+-+-+ +-+.+|.||+|=+||+|++.+|..||..||-|+.=.
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs-----~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~ 68 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSS-----KKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGK 68 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecC-----CCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceee
Confidence 34566677665555 56664333 235789999999999999999999999999999843
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.25 E-value=0.00033 Score=66.72 Aligned_cols=129 Identities=21% Similarity=0.297 Sum_probs=80.8
Q ss_pred cCCCCccceeecccccCCCCCCCCCCCC--hhhHHHhhcCCCCCCCccccCCCCCcccHhHHHHHhhcCc----------
Q 048617 54 FPSNPRRFLKIPIMSRTNHQLHHHSFAT--PQSLSDWLKPRLPSDSFASWGVKPGTKNVHNLWLELSDGE---------- 121 (281)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~sL~~wLk~rl~~~~~~~wG~~pgtK~v~~L~~El~~ge---------- 121 (281)
++.=.-||.-+++-.. +.|-....|.. .+||++|=-+. ..+.|=+-| +-+++|..|...-.
T Consensus 22 l~~~~D~~ggv~v~~~-~~~~d~~~f~~~l~~Sl~~W~~~G----r~~iwl~l~--~~~~~lV~~a~~~gf~~hHae~~~ 94 (295)
T KOG0648|consen 22 LAGLSDRYGGVVVDIV-PEPMDEKLFIEELRASLQKWYLQG----RKGIWLKLP--EELARLVEEAAKYGFDYHHAESLY 94 (295)
T ss_pred hcccccccCCEEeecc-cCCCCHHHHHHHHHHHHHHHHHcc----Ccccceech--HHHHhHHHHHHhcCcEEecccccc
Confidence 3333556755444222 44444566766 78999996643 344455444 55666655543322
Q ss_pred ----eee--ecCCCCee---EEEEEEEEEEecCCcEEEEeecccCCCc--ccccCCCCCcccCCCCCHHHHHHHHHHHHh
Q 048617 122 ----TCL--ADAIPPVR---TVNVVTVRIIGKDNQILVESHQELSDGS--VRNRCRPLAEKMKSNETPEEAVIRAVKEEL 190 (281)
Q Consensus 122 ----t~L--~ds~~p~R---~V~Vvva~I~~~~GriLIe~RqefpgG~--vR~RWEfPGGKvepGEt~eeAl~REi~EEL 190 (281)
++| +.+.-|.- .|-| .+.|+|...++|+-+- -+|. .++-|-+|+|++++||++-++++||++||+
T Consensus 95 ~~l~~Wl~e~~~~lP~~Ash~vgv-g~~V~n~~~eVlVv~e---~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeet 170 (295)
T KOG0648|consen 95 VMLTSWLREAPSTLPANASHRVGV-GAFVLNKKKEVLVVQE---KDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEET 170 (295)
T ss_pred eeeeeeeccccccCCCchhhheee-eeeEecCCceeEEEEe---cccceeecccccccceEecccccchhhhhhhhHHHh
Confidence 344 12333321 2433 4556688889998532 2333 467799999999999999999999999999
Q ss_pred Ccc
Q 048617 191 GSI 193 (281)
Q Consensus 191 Gi~ 193 (281)
|+.
T Consensus 171 gid 173 (295)
T KOG0648|consen 171 GID 173 (295)
T ss_pred Ccc
Confidence 995
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.18 E-value=0.0018 Score=58.24 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=41.3
Q ss_pred EEEEEecCCcEEEEeecccCCCcccccC-----CCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 138 TVRIIGKDNQILVESHQELSDGSVRNRC-----RPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 138 va~I~~~~GriLIe~RqefpgG~vR~RW-----EfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.+-|.|++|++||.+|. ..+-...+.| -=|. +||+...|++|=+.+||||++.
T Consensus 37 S~~lFne~g~LLltrRA-~~K~twP~vWTNSvCsHP~----~~es~~~A~~rRl~~ELGie~~ 94 (185)
T COG1443 37 SSFLFNERGQLLLTRRA-LSKKTWPGVWTNSVCSHPL----PGESNEDAARRRLAYELGIEPD 94 (185)
T ss_pred heeEECCCCceeeehhh-hhcccCcccccccccCCCc----CCCchHHHHHHHHHHHhCCCCc
Confidence 46689999999999997 2333334455 2232 9999999999999999999987
No 90
>PLN02839 nudix hydrolase
Probab=96.24 E-value=0.023 Score=55.94 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=46.6
Q ss_pred EEEEEEEEEecCCcEEEEeecccCCCcccccC-CCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 134 VNVVTVRIIGKDNQILVESHQELSDGSVRNRC-RPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 134 V~Vvva~I~~~~GriLIe~RqefpgG~vR~RW-EfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
||+-.-+-.+.++++.|.+|.. .+-.-.++| -..+|=|-.||++.+|+.||..||.|+...
T Consensus 206 VHlNGyv~~~g~~~lWV~RRS~-tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~ 267 (372)
T PLN02839 206 VHMNGYVERDGQKFLWIGKRSL-SKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKA 267 (372)
T ss_pred EEEEEEEecCCCeEEEeeccCC-CCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHH
Confidence 6666544444456799999973 444455666 677888999999999999999999999754
No 91
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=96.14 E-value=0.011 Score=55.28 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=42.7
Q ss_pred CeeEEEEEEEEEEecC--CcEEEEeecccCCCcccccCCCCCcccCC-CCCHHHHHHHHHHHHhCcccc
Q 048617 130 PVRTVNVVTVRIIGKD--NQILVESHQELSDGSVRNRCRPLAEKMKS-NETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 130 p~R~V~Vvva~I~~~~--GriLIe~RqefpgG~vR~RWEfPGGKvep-GEt~eeAl~REi~EELGi~v~ 195 (281)
|.|.--|..+.....+ -++|+++|.+--. +..+-=-|||||+++ .+|-.+++.||-.||+|+.-+
T Consensus 40 ~~~~~aVlI~L~~~~~~~l~vLltkRSr~Lr-shsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~ 107 (246)
T KOG3069|consen 40 PNRKAAVLIPLVQVGSGELSVLLTKRSRTLR-SHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE 107 (246)
T ss_pred CCCCccEEEEEEEcCCCceEEEEEecccccc-ccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH
Confidence 3343444555444423 4899999861100 011112799999999 667788999999999999864
No 92
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.50 E-value=0.1 Score=50.67 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=47.8
Q ss_pred EEEEEecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccccCC
Q 048617 138 TVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSL 217 (281)
Q Consensus 138 va~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~S~ 217 (281)
.+.|+..+|++|+++|+ ++|-+++.|+||+-. + ++. .++..|++|+.... +. .+....|
T Consensus 234 ~~~~~~~~~~~~l~~r~--~~gl~~gl~~fP~~~-----~-~~~-~~~~~~~~~~~~~~---~~---------~~~~~~H 292 (350)
T PRK10880 234 YFLLLQHGDEVWLEQRP--PSGLWGGLFCFPQFA-----D-EEE-LRQWLAQRGIAADN---LT---------QLTAFRH 292 (350)
T ss_pred EEEEEEECCEEEEEECC--ccChhhccccCCCCc-----c-hhh-HHHHHHhcCCchhh---hc---------ccCceEE
Confidence 33444567899999998 899999999999742 1 222 34555788764220 00 0234557
Q ss_pred CCCCCccEEEEEEEEEEe
Q 048617 218 SYPGLPARYVLHSVDAFV 235 (281)
Q Consensus 218 SYPGL~vryvLh~v~a~V 235 (281)
.|.++. +.|+.+.+.+
T Consensus 293 ~fTH~~--~~~~~~~~~~ 308 (350)
T PRK10880 293 TFSHFH--LDIVPMWLPV 308 (350)
T ss_pred EEeeEE--EEEEEEEEEc
Confidence 777776 6666666654
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.061 Score=50.65 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=26.9
Q ss_pred cccCCCCCcccCCCCCHHHHHHHHHHHHh
Q 048617 162 RNRCRPLAEKMKSNETPEEAVIRAVKEEL 190 (281)
Q Consensus 162 R~RWEfPGGKvepGEt~eeAl~REi~EEL 190 (281)
-+-|-.|||-++|||.+-+.|+||+.||-
T Consensus 149 ~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 149 NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 46799999999999999999999999994
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=92.95 E-value=0.3 Score=42.96 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCcc-----cccCCCCCcccCCCCCHHHHHHHHHHHHhCccccCCceEEeeCCCcccccccccCCCCCCCccEEEEEEE
Q 048617 157 SDGSV-----RNRCRPLAEKMKSNETPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSV 231 (281)
Q Consensus 157 pgG~v-----R~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~~~~~V~Vl~gsy~~~~e~r~S~SYPGL~vryvLh~v 231 (281)
|||-. -+-|-.|-|....||.+..|.+||.-||+||.|+ +-... -++|+ -+|-.+ +..+.+
T Consensus 25 PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~--lG~~k----------Q~GGKv-Vta~~v 90 (161)
T COG4119 25 PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD-GPRID--LGSLK----------QSGGKV-VTAFGV 90 (161)
T ss_pred CCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec-Cchhh--hhhhc----------cCCCcE-EEEEee
Confidence 66643 3569999999999999999999999999999996 33322 23333 344432 566666
Q ss_pred EEEe--cCCCCCCCccccccc
Q 048617 232 DAFV--DGLPEEGEFCTEEAE 250 (281)
Q Consensus 232 ~a~V--~GlPe~~eF~TeE~~ 250 (281)
.+++ ...=. +-|.+|=..
T Consensus 91 eae~Dva~~rS-ntFe~eWPp 110 (161)
T COG4119 91 EAELDVADARS-NTFELEWPP 110 (161)
T ss_pred eeeeehhhhhc-ceeeeecCC
Confidence 6664 32222 556665433
No 95
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=92.63 E-value=0.33 Score=45.48 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=29.2
Q ss_pred EEEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcc
Q 048617 133 TVNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEK 171 (281)
Q Consensus 133 ~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGK 171 (281)
...+.+.+|.+.+|++|+.+|+ .+|-+++.|+||+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~r~--~~~~~~gl~~~p~~~ 262 (275)
T TIGR01084 226 ERTTYFLVLQNYDGEVLLEQRP--EKGLWGGLYCFPQFE 262 (275)
T ss_pred eEEEEEEEEEeCCCeEEEEeCC--CCchhhccccCCCCC
Confidence 3445555566778999999998 889999999999853
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=91.81 E-value=1.1 Score=40.79 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=49.9
Q ss_pred HHHhhcCceeeecCCCCeeEEEEEEEEEEecCCcEEEEeecccCCCc-ccccC---CCCCcccCCCC---CHHHH----H
Q 048617 114 WLELSDGETCLADAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGS-VRNRC---RPLAEKMKSNE---TPEEA----V 182 (281)
Q Consensus 114 ~~El~~get~L~ds~~p~R~V~Vvva~I~~~~GriLIe~RqefpgG~-vR~RW---EfPGGKvepGE---t~eeA----l 182 (281)
|.|.+.|+.--..+. +. + +--|+|.+++ +|||-.|- .||. -|-.+ -=-||-|..++ +.++. +
T Consensus 45 yre~rRgdaEeDp~~--KQ-~-IpYvvi~~ed-evliyeRl--tgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~ 117 (203)
T COG4112 45 YREKRRGDAEEDPTT--KQ-V-IPYVVIMDED-EVLIYERL--TGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNL 117 (203)
T ss_pred HHHHhccccccCccc--cc-c-ccEEEEecCC-EEEEEEec--cCcchhhhccccccccccccccCCCcccHHHHHccch
Confidence 566667765432221 22 2 3345688888 89999886 5553 33333 33588887743 33333 5
Q ss_pred HHHHHHHhCccccCCceEEee
Q 048617 183 IRAVKEELGSILNDSITVRIV 203 (281)
Q Consensus 183 ~REi~EELGi~v~~~~~V~Vl 203 (281)
.||+.||+++.=+.-+.+..+
T Consensus 118 ~REleEEv~vseqd~q~~e~l 138 (203)
T COG4112 118 ERELEEEVDVSEQDLQELEFL 138 (203)
T ss_pred HHHHHHHhCcCHHHhhhheee
Confidence 799999999985544444443
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=86.96 E-value=1.7 Score=39.57 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=34.8
Q ss_pred eeEEEEEEEEEEecCC--cEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCccc
Q 048617 131 VRTVNVVTVRIIGKDN--QILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSIL 194 (281)
Q Consensus 131 ~R~V~Vvva~I~~~~G--riLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v 194 (281)
+|+| -+++++.+.+ -||+=|.. - ..+..|||++++||+..+.|+|-|.+-|+..=
T Consensus 43 RrsV--e~Vllvh~h~~PHvLLLq~~----~---~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 43 RRSV--EGVLLVHEHGHPHVLLLQIG----N---TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp EEEE--EEEEEEEETTEEEEEEEEET----T---TEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred ceEE--EEEEEEecCCCcEEEEEecc----C---ccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 5544 4444555555 46665432 1 25799999999999999999999999999873
No 98
>PRK13910 DNA glycosylase MutY; Provisional
Probab=84.42 E-value=3.1 Score=39.57 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=23.5
Q ss_pred EEEEEEEEecCCcEEEEeecccCCCcccccCCCCCc
Q 048617 135 NVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAE 170 (281)
Q Consensus 135 ~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGG 170 (281)
+...++|. .+|++|+.+| ++|-+++.|+||+.
T Consensus 187 ~~~~~~~~-~~~~~ll~kr---~~~l~~gl~~fP~~ 218 (289)
T PRK13910 187 ERYLGVVI-QNNQIALEKI---EQKLYLGMHHFPNL 218 (289)
T ss_pred EEEEEEEE-ECCEEEEEEC---CCchhcccccCCCC
Confidence 33334444 5779999987 47889999999974
No 99
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=64.82 E-value=1.2 Score=43.87 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=45.7
Q ss_pred EEEEEEEEEEecC-CcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhCcccc
Q 048617 133 TVNVVTVRIIGKD-NQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 133 ~V~Vvva~I~~~~-GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELGi~v~ 195 (281)
.|-|-.|.|.|+. .|+|+.+-+ -+.-|.||=||+--.|++..|+.||+.||+|-++.
T Consensus 81 ~iPv~ga~ild~~~sr~llv~g~------qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 81 RIPVRGAIILDEKRSRCLLVKGW------QASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CCCCchHhhhhhhhhhhheeece------ecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 3445567788763 588886443 34459999999999999999999999999999876
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=56.86 E-value=10 Score=34.92 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCCCcccCCCCCHHHHHHHHHHHHhC
Q 048617 165 CRPLAEKMKSNETPEEAVIRAVKEELG 191 (281)
Q Consensus 165 WEfPGGKvepGEt~eeAl~REi~EELG 191 (281)
...|||.++|||+-.+.|+|=+-|-||
T Consensus 96 ~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 96 FKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred EecCCCccCCCcchhHHHHHHHHHHhc
Confidence 378999999999999999999999999
No 101
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=41.81 E-value=20 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=22.9
Q ss_pred hcCCCCCCCccccCCCCCcccHhHHHHHh
Q 048617 89 LKPRLPSDSFASWGVKPGTKNVHNLWLEL 117 (281)
Q Consensus 89 Lk~rl~~~~~~~wG~~pgtK~v~~L~~El 117 (281)
|+.+.+||.+...|. .|+|.|.++|.|.
T Consensus 3 iR~~~~gd~~~~~g~-~~~k~lkk~~~e~ 30 (47)
T TIGR02433 3 VRFRQGGDRIKLLGR-KGSKKLKKLFIDA 30 (47)
T ss_pred EeccCCCCEEEECCC-CCCchHHHHHHHc
Confidence 567788988888884 5789999999874
No 102
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.12 E-value=25 Score=34.82 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.7
Q ss_pred EEEEEEEEEecCCcEEEEeecccCCCcccccCCCCCcccCC
Q 048617 134 VNVVTVRIIGKDNQILVESHQELSDGSVRNRCRPLAEKMKS 174 (281)
Q Consensus 134 V~Vvva~I~~~~GriLIe~RqefpgG~vR~RWEfPGGKvep 174 (281)
...++.+|.+.+|++++++|. +.|-+++.|.||..+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~--~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRP--EKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred hheeeEEEEccCcchhhhhCc--ccCceecccccccccccc
Confidence 456677788999999999998 899999999999887765
No 103
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=39.09 E-value=27 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCChhhHHHhhcC
Q 048617 70 TNHQLHHHSFATPQSLSDWLKP 91 (281)
Q Consensus 70 ~~~~~~~~~f~~~~sL~~wLk~ 91 (281)
|..|.++..|+++++|+++|+.
T Consensus 2 p~~P~~Pg~~a~~eel~~Y~~~ 23 (36)
T cd00126 2 PSKPENPGDDASPEELRQYLAA 23 (36)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH
Confidence 4567778999999999999864
No 104
>CHL00064 psbE photosystem II protein V
Probab=36.52 E-value=48 Score=26.97 Aligned_cols=60 Identities=22% Similarity=0.472 Sum_probs=40.6
Q ss_pred eEEeCCchhHHHHhheeeee-ecCCCCCCcCCCCcCccccCCCCccceeecccccCCCCCCCCCCCChhhHHHhhcC
Q 048617 16 IKIINPPASILAAFSVLCLF-TCSKPYNTTSTLKIPFLTFPSNPRRFLKIPIMSRTNHQLHHHSFATPQSLSDWLKP 91 (281)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~sL~~wLk~ 91 (281)
|..|.+|.+|++.. || |+--.++.+.+|+ |-=-|.++. -++|... ..|...++|.++.+.
T Consensus 22 IHsITIPslFiaGw----LFVstGLAYdvFGtPr-pneYft~~r---q~iplv~--------dRf~~~~ql~~~~~~ 82 (83)
T CHL00064 22 IHSITIPSLFIAGW----LFVSTGLAYDVFGSPR-PNEYFTESR---QEIPLIT--------GRFDPLEQLDEFTRS 82 (83)
T ss_pred EEeechhHHHhhch----heeecCcceeccCCCC-ccccccccc---ccCccee--------ccccHHHHHHHHhcc
Confidence 67899999999863 44 6677787778777 333343222 2455544 788888888887663
No 105
>PRK02557 psbE cytochrome b559 subunit alpha; Provisional
Probab=35.88 E-value=48 Score=26.85 Aligned_cols=59 Identities=32% Similarity=0.531 Sum_probs=38.3
Q ss_pred eEEeCCchhHHHHhheeeee-ecCCCCCCcCCCCcCccccCCCCccceeecccccCCCCCCCCCCCChhhHHHhhc
Q 048617 16 IKIINPPASILAAFSVLCLF-TCSKPYNTTSTLKIPFLTFPSNPRRFLKIPIMSRTNHQLHHHSFATPQSLSDWLK 90 (281)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~sL~~wLk 90 (281)
|..|.+|.+|++.. || |+---++.+.+|+ |.=-|.++. -++|... ..|...++|.++.|
T Consensus 22 IHsITIPsLFiaGw----LFVstGLAYdvFGtPr-pneYft~~r---q~~plv~--------dRf~a~~ql~~~~~ 81 (81)
T PRK02557 22 IHAITIPALFIAGW----LFVSTGLAYDAFGTPR-PDEYFTQSR---SKAPIVS--------DRYEAKQQLDEFLK 81 (81)
T ss_pred EEeechhHHHhhhh----heeecCceeeccCCCC-ccccccccc---ccCccee--------ccccHHHHHHHhhC
Confidence 67799999999863 44 6666777777777 333343222 2455544 77887888877654
No 106
>PF14044 NETI: NETI protein
Probab=33.87 E-value=28 Score=26.57 Aligned_cols=14 Identities=29% Similarity=0.492 Sum_probs=13.0
Q ss_pred ccCCCCCHHHHHHH
Q 048617 171 KMKSNETPEEAVIR 184 (281)
Q Consensus 171 KvepGEt~eeAl~R 184 (281)
+++.+||+.+||.|
T Consensus 3 eV~enETI~~CL~R 16 (57)
T PF14044_consen 3 EVEENETISDCLAR 16 (57)
T ss_pred eccCCCcHHHHHHH
Confidence 58899999999999
No 107
>TIGR01332 cyt_b559_alpha cytochrome b559, alpha subunit. Sequences scoring between trusted and noise cutoffs are fragments.
Probab=30.54 E-value=66 Score=26.03 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=36.9
Q ss_pred eEEeCCchhHHHHhheeeee-ecCCCCCCcCCCCcCccccCCCCccceeecccccCCCCCCCCCCCChhhHHHhh
Q 048617 16 IKIINPPASILAAFSVLCLF-TCSKPYNTTSTLKIPFLTFPSNPRRFLKIPIMSRTNHQLHHHSFATPQSLSDWL 89 (281)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~sL~~wL 89 (281)
|..|.+|.+|++.. || |+---++.+.+|+ |.=-|-++ | -++|.+. ..|...++|.++.
T Consensus 21 IHsITIPsLFiaGw----LFVstGLAYdvFGtPr-pneYft~~-r--q~~plv~--------dRf~a~~ql~~~~ 79 (80)
T TIGR01332 21 IHSITIPMLFIAGW----LFVSTGLAYDAFGTPR-PNEYFTQT-R--QELPLLQ--------DRFDANQEIQEFN 79 (80)
T ss_pred EEeechhHHHhhhh----heeecCcceeccCCCC-cccccccc-c--ccCccee--------ccccHHHHHHHhh
Confidence 67899999999873 44 6666777777776 33334222 2 2455543 6787777777654
No 108
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.86 E-value=35 Score=26.27 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=23.4
Q ss_pred cccCCCCCcccCCCCCHHHHHHHHHHHHhC
Q 048617 162 RNRCRPLAEKMKSNETPEEAVIRAVKEELG 191 (281)
Q Consensus 162 R~RWEfPGGKvepGEt~eeAl~REi~EELG 191 (281)
.+-|.+|||||--+-.-.+-++.|+.+-..
T Consensus 21 ~~GWl~Pgg~vi~NPlkAqR~AE~~n~~~~ 50 (60)
T PF07026_consen 21 KNGWLMPGGKVITNPLKAQRLAEELNSKQV 50 (60)
T ss_pred cceeecCCCeeEcCHHHHHHHHHHHHhhHh
Confidence 345999999999888777777777777643
No 109
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=29.79 E-value=44 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCChhhHHHhhcC
Q 048617 70 TNHQLHHHSFATPQSLSDWLKP 91 (281)
Q Consensus 70 ~~~~~~~~~f~~~~sL~~wLk~ 91 (281)
|+.|.++..|+++..|+++|+.
T Consensus 2 p~~P~~P~~~aspeel~~Y~~~ 23 (36)
T PF00159_consen 2 PSKPERPGDFASPEELAQYYAA 23 (36)
T ss_dssp -SSSSSSSTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHH
Confidence 4556677999999999999863
No 110
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=29.44 E-value=31 Score=34.76 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCcccc
Q 048617 172 MKSNETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 172 vepGEt~eeAl~REi~EELGi~v~ 195 (281)
+++.+---+.+.|||||||+|-+-
T Consensus 409 V~~~dLsDe~~MrelReeL~IG~i 432 (466)
T PF09505_consen 409 VEPMDLSDEYVMRELREELNIGVI 432 (466)
T ss_pred CChhhcccHHHHHHHHHhcCccee
Confidence 567777889999999999999864
No 111
>PRK07198 hypothetical protein; Validated
Probab=26.06 E-value=2.6e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=28.7
Q ss_pred ecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHHHHHHHHHHHhC
Q 048617 143 GKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEEAVIRAVKEELG 191 (281)
Q Consensus 143 ~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~eeAl~REi~EELG 191 (281)
+++|.+.+.+=. +.--|-+||=--+.|=+ |..|.|.|+|++|
T Consensus 159 ~~~g~~~vtk~a------v~pvwylpgva~rfg~~-e~~lrr~lfe~t~ 200 (418)
T PRK07198 159 LANGDVVVTKAA------IEPVWYLPGVAERFGVS-ETDLRRTLFEQTG 200 (418)
T ss_pred cCCCcEEEEEee------ecccccccchHHHcCCC-HHHHHHHHHHHcC
Confidence 445555554332 45668888876666654 7899999999975
No 112
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=25.65 E-value=4.6e+02 Score=23.93 Aligned_cols=71 Identities=25% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCcccHhHHHHHhhcCc--eeeecCCCCeeEEEEEEEEE--EecCCcEEEEeecccCCCcccccCCCCCcccCCCCCHHH
Q 048617 105 PGTKNVHNLWLELSDGE--TCLADAIPPVRTVNVVTVRI--IGKDNQILVESHQELSDGSVRNRCRPLAEKMKSNETPEE 180 (281)
Q Consensus 105 pgtK~v~~L~~El~~ge--t~L~ds~~p~R~V~Vvva~I--~~~~GriLIe~RqefpgG~vR~RWEfPGGKvepGEt~ee 180 (281)
+..+.+.+++.++.+-. +.|-|-.... -|.|++|++ .+.++..+.. -+-.+=++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~v~l~dit~~~-~vpv~~a~~~~~~~~~~~~~~-------------------G~ga~~~~~~ 215 (332)
T PF02624_consen 156 PTLPELLERLERLREAGLEVRLFDITNDF-GVPVVAAVLRNEDKDRPYYAV-------------------GAGAHLDPEE 215 (332)
T ss_pred cCCHHHHHHHHHhhcCceEEEEEECCCCC-CceEEEEEEEecCCCCcceEE-------------------EeccCCCHHH
Confidence 44567777777765544 3334433333 366777777 3333222221 2335679999
Q ss_pred HHHHHHHHHhCcccc
Q 048617 181 AVIRAVKEELGSILN 195 (281)
Q Consensus 181 Al~REi~EELGi~v~ 195 (281)
|+.|+|.|=+.....
T Consensus 216 Al~rAl~E~~q~~~~ 230 (332)
T PF02624_consen 216 ALERALTEAAQSRLL 230 (332)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999996655543
No 113
>PF15603 Imm45: Immunity protein 45
Probab=25.50 E-value=58 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=26.4
Q ss_pred ccCCCCCcccCCCCCHHHHHHHHHHHHhC
Q 048617 163 NRCRPLAEKMKSNETPEEAVIRAVKEELG 191 (281)
Q Consensus 163 ~RWEfPGGKvepGEt~eeAl~REi~EELG 191 (281)
+-|++|.....-.+.-.|.+.++|.+++.
T Consensus 45 ~~We~P~e~~~it~~e~q~II~aI~~~~~ 73 (82)
T PF15603_consen 45 KNWEPPHENEPITIAERQKIIEAIEKYFS 73 (82)
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999873
No 114
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=24.57 E-value=67 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCChhhHHHhhcC
Q 048617 70 TNHQLHHHSFATPQSLSDWLKP 91 (281)
Q Consensus 70 ~~~~~~~~~f~~~~sL~~wLk~ 91 (281)
|+.|.++..|+++..|+++|+.
T Consensus 2 p~~P~~Pg~~a~~e~l~~Y~~~ 23 (36)
T smart00309 2 PSKPERPGDDASPEDLRQYLAA 23 (36)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH
Confidence 4566778999999999999864
No 115
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.10 E-value=70 Score=30.18 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=50.1
Q ss_pred CcccHhHHHHHhhcCceeeecCCCCeeEEEEEEEEEEecCCcEEEEeecccCCCcccccC------CCC--CcccCC--C
Q 048617 106 GTKNVHNLWLELSDGETCLADAIPPVRTVNVVTVRIIGKDNQILVESHQELSDGSVRNRC------RPL--AEKMKS--N 175 (281)
Q Consensus 106 gtK~v~~L~~El~~get~L~ds~~p~R~V~Vvva~I~~~~GriLIe~RqefpgG~vR~RW------EfP--GGKvep--G 175 (281)
|||---.|-.+...| .| -|.- .+-+.|.+|++|+.+|.. ..=+..+.| .|+ -|+++. +
T Consensus 35 ~tk~~cHl~eni~kg--lL------HRaF---SVFlFns~~~lLlQqRS~-~KitFP~~~TNtccSHPL~~~~el~~~d~ 102 (225)
T KOG0142|consen 35 GTKKNCHLMENIEKG--LL------HRAF---SVFLFNSKNELLLQQRSD-EKITFPGLWTNTCCSHPLYNPGELEENDA 102 (225)
T ss_pred hhhhhhhcchhHHhh--hh------hhee---eEEEecCcchHHHhhhcc-ccccccchhhhhhhcCcCCChhhhccCch
Confidence 344444477777776 33 2333 345889999999999861 222233445 444 334443 4
Q ss_pred CCHHHHHHHHHHHHhCcccc
Q 048617 176 ETPEEAVIRAVKEELGSILN 195 (281)
Q Consensus 176 Et~eeAl~REi~EELGi~v~ 195 (281)
.-+..|.+|-|+=||||..+
T Consensus 103 lGVr~AAqRkL~~ELGIp~e 122 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLE 122 (225)
T ss_pred HHHHHHHHHHHHHhhCCCcc
Confidence 47889999999999999876
No 116
>PF07704 PSK_trans_fac: Rv0623-like transcription factor; InterPro: IPR011660 This entry represents the Rv0623 (P96913 from SWISSPROT)-like group of transcription factors associated with the PSK operon [].
Probab=20.70 E-value=91 Score=24.35 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhC
Q 048617 175 NETPEEAVIRAVKEELG 191 (281)
Q Consensus 175 GEt~eeAl~REi~EELG 191 (281)
|+|..+|+.++|+|+|-
T Consensus 22 G~s~TeAVr~AL~~~L~ 38 (82)
T PF07704_consen 22 GESKTEAVRRALRERLE 38 (82)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88999999999999986
No 117
>PHA02130 hypothetical protein
Probab=20.56 E-value=67 Score=25.63 Aligned_cols=36 Identities=31% Similarity=0.661 Sum_probs=24.4
Q ss_pred CCCCCChhhHHHhhcCCCCC----------CCccccCCCCCcccHh
Q 048617 76 HHSFATPQSLSDWLKPRLPS----------DSFASWGVKPGTKNVH 111 (281)
Q Consensus 76 ~~~f~~~~sL~~wLk~rl~~----------~~~~~wG~~pgtK~v~ 111 (281)
...|.+-+||.+||..|.++ -++--||.-|=+..++
T Consensus 10 ektfks~~sl~~wl~~~~dswdddil~ipfkstv~w~lcp~~qdi~ 55 (81)
T PHA02130 10 EKTFKSWESLREWLDERFDSWDDDILSIPFKSTVYWDLCPYAQDIH 55 (81)
T ss_pred cchhHHHHHHHHHHHhcccccccchhcccccceeeeccCcchhhhh
Confidence 36799999999999999653 2344566655444443
Done!