BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048618
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
N+L +L L+ N TG++P + + EL L LS N + ++P N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 61 FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
E+P+EL + L L L N L GE+ S + N +L ++LS+N L+G IP +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 121 HGLSVIDISDNQLQGPVP 138
L+++ +S+N G +P
Sbjct: 511 ENLAILKLSNNSFSGNIP 528
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
N +PKE+ + L L+L HN + G + ++ ++ L L+LS N L G IP
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159
+ L+ ID+S+N L GP+P F P N LCG
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L L N L+G +P+ +GS +L L L N +P+ N
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
E+P L L+ + LS+N L GE+ I +E+L L LS+N+ SG+IP
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEA 150
L +D++ N G +P + ++ + A
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137
LD+S+N L G + +I +M L LNL HN++SGSIP+ + GL+++D+S N+L G +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 138 PNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHK 174
P + + E N L G + M + F K
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
+L L + GN+L+G I + EL+ L++S+N+F +P N+F
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKF 278
Query: 62 VQELPKELEKLVQ-LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEG 119
E+P L L+ LDLS N G + + LE L LS NN SG +P +
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 120 MHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152
M GL V+D+S N+ G +P S +A + L+
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSV-------PKXXXXXXXXXXX 54
L L L N+ +G LP + + L LDLS+N F+ + PK
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-- 399
Query: 55 XXXNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
NN F ++P L +L L LS N+L G + S + ++ L L L N L G IP
Sbjct: 400 ---NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 115 NCFEGMHGLSVIDISDNQLQGPVP 138
+ L + + N L G +P
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIP 480
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXX-------- 54
L L L N +G +P E+G + L +LDL+ N FN ++P
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 55 -XXXNNQFVQEL-------------PKELEKLVQLSELDLSHNFLGGELLSQICNMESLE 100
N+ +E ++L +L + +++ GG N S+
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTA-FRNAPVEALEGNK 155
L++S+N LSG IP M L ++++ N + G +P+ R + L NK
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 26 ELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELEKLVQLSELDLSHNFL 85
+ +LD+S N + +PK +N +P E+ L L+ LDLS N L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 86 GGELLSQICNMESLEKLNLSHNNLSGSIP 114
G + + + L +++LS+NNLSG IP
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L + GN+++G + ++ LE+LD+S+N F+ +P N+
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM-H 121
+ + + +L L++S N G + ++SL+ L+L+ N +G IP+ G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 122 GLSVIDISDNQLQGPVP 138
L+ +D+S N G VP
Sbjct: 292 TLTGLDLSGNHFYGAVP 308
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXN-N 59
++LT L L GN G +P GS LE L LS+N F+ +P + N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 60 QFVQELPKELEKL-VQLSELDLSHNFLGGELLSQIC------------------------ 94
+F ELP+ L L L LDLS N G +L +C
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 95 --NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
N L L+LS N LSG+IP+ + L + + N L+G +P
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 24/79 (30%)
Query: 11 NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELE 70
N ++G +P E+G + L LDLS+N+ + + P+ +
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRI------------------------PQAMS 698
Query: 71 KLVQLSELDLSHNFLGGEL 89
L L+E+DLS+N L G +
Sbjct: 699 ALTMLTEIDLSNNNLSGPI 717
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK 43
L L L N+L GR+P + + L +DLS N + +P+
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
N+L +L L+ N TG++P + + EL L LS N + ++P N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 61 FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
E+P+EL + L L L N L GE+ S + N +L ++LS+N L+G IP +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 121 HGLSVIDISDNQLQGPVP 138
L+++ +S+N G +P
Sbjct: 514 ENLAILKLSNNSFSGNIP 531
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
N +PKE+ + L L+L HN + G + ++ ++ L L+LS N L G IP
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159
+ L+ ID+S+N L GP+P F P N LCG
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L L N L+G +P+ +GS +L L L N +P+ N
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
E+P L L+ + LS+N L GE+ I +E+L L LS+N+ SG+IP
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 123 LSVIDISDNQLQGPVP 138
L +D++ N G +P
Sbjct: 540 LIWLDLNTNLFNGTIP 555
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137
LD+S+N L G + +I +M L LNL HN++SGSIP+ + GL+++D+S N+L G +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 138 PNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHK 174
P + + E N L G + M + F K
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
+L L + GN+L+G I + EL+ L++S+N+F +P N+F
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKF 281
Query: 62 VQELPKELEKLVQ-LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEG 119
E+P L L+ LDLS N G + + LE L LS NN SG +P +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 120 MHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152
M GL V+D+S N+ G +P S +A + L+
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSV-------PKXXXXXXXXXXX 54
L L L N+ +G LP + + L LDLS+N F+ + PK
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-- 402
Query: 55 XXXNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
NN F ++P L +L L LS N+L G + S + ++ L L L N L G IP
Sbjct: 403 ---NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 115 NCFEGMHGLSVIDISDNQLQGPVP 138
+ L + + N L G +P
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIP 483
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXX-------- 54
L L L N +G +P E+G + L +LDL+ N FN ++P
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 55 -XXXNNQFVQEL-------------PKELEKLVQLSELDLSHNFLGGELLSQICNMESLE 100
N+ +E ++L +L + +++ GG N S+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTA-FRNAPVEALEGNK 155
L++S+N LSG IP M L ++++ N + G +P+ R + L NK
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 26 ELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELEKLVQLSELDLSHNFL 85
+ +LD+S N + +PK +N +P E+ L L+ LDLS N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 86 GGELLSQICNMESLEKLNLSHNNLSGSIP 114
G + + + L +++LS+NNLSG IP
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L + GN+++G + ++ LE+LD+S+N F+ +P N+
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM-H 121
+ + + +L L++S N G + ++SL+ L+L+ N +G IP+ G
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 122 GLSVIDISDNQLQGPVP 138
L+ +D+S N G VP
Sbjct: 295 TLTGLDLSGNHFYGAVP 311
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXN-N 59
++LT L L GN G +P GS LE L LS+N F+ +P + N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 60 QFVQELPKELEKL-VQLSELDLSHNFLGGELLSQIC------------------------ 94
+F ELP+ L L L LDLS N G +L +C
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 95 --NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
N L L+LS N LSG+IP+ + L + + N L+G +P
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 24/79 (30%)
Query: 11 NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELE 70
N ++G +P E+G + L LDLS+N+ + + P+ +
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRI------------------------PQAMS 701
Query: 71 KLVQLSELDLSHNFLGGEL 89
L L+E+DLS+N L G +
Sbjct: 702 ALTMLTEIDLSNNNLSGPI 720
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK 43
L L L N+L GR+P + + L +DLS N + +P+
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
N V +P + KL QL L ++H + G + + +++L L+ S+N LSG++P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 119 GMHGLSVIDISDNQLQGPVPNS 140
+ L I N++ G +P+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXX-XXXXXXNNQ 60
+L L N L+G LP I S L + NR + ++P N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 61 FVQELPKELEKLVQLSELDLSHNFLGGEL-----------------------LSQICNME 97
++P L L+ +DLS N L G+ L ++ +
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157
+L L+L +N + G++P + L +++S N L G +P + V A NK L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 158 CG 159
CG
Sbjct: 305 CG 306
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 30/156 (19%)
Query: 11 NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELE 70
N L G +P I +L YL ++ + ++P L
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------------------------LS 122
Query: 71 KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGL-SVIDIS 129
++ L LD S+N L G L I ++ +L + N +SG+IP+ + L + + IS
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 130 DNQLQGPVPNS-----TAFRNAPVEALEGNKELCGG 160
N+L G +P + AF + LEG+ + G
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
LT+L L GN LT LP EI + L LDLS NR S+P +N V
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDN-MV 305
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELL 90
LP E L L L + N L + L
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFL 333
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 58 NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH--NNLSGSIPN 115
N + ELP E++ L L LDLSHN L S + S +L + +N+ ++P
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHN----RLTSLPAELGSCFQLKYFYFFDNMVTTLPW 310
Query: 116 CFEGMHGLSVIDISDNQLQ 134
F + L + + N L+
Sbjct: 311 EFGNLCNLQFLGVEGNPLE 329
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
NQF +PKEL L+ +DLS+N + NM L L LS+N L P F+
Sbjct: 41 NQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 119 GMHGLSVIDISDNQL 133
G+ L ++ + N +
Sbjct: 100 GLKSLRLLSLHGNDI 114
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
+T+L L GNQ T +P E+ ++K L +DLS NR + +NQ
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----------------LSNQ-- 72
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
+ QL L LS+N L ++SL L+L N++S F +
Sbjct: 73 -----SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 123 LSVIDISDNQL 133
LS + I N L
Sbjct: 128 LSHLAIGANPL 138
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 72 LVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
L L +L+LS NFLG N++ LE L+LS+N++ F G+ L + + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 132 QLQGPVPN 139
QL+ VP+
Sbjct: 382 QLKS-VPD 388
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 69 LEKLVQLSELDLSHNFL-GGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVI 126
LEKL L LDLSHN + + S Q+ N+ L+ LNLSHN G F+ L ++
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 127 DISDNQLQGPVPNSTAFRN 145
D++ +L P S F+N
Sbjct: 403 DLAFTRLHINAPQS-PFQN 420
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 5 KLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQE 64
+L L L G LP+ I L+ L L+AN F+ N +
Sbjct: 281 ELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLD 339
Query: 65 L-PKELEKLVQLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
L + LEKL L +LDLSH+ + Q+ N+ L+ LNLS+N G F+
Sbjct: 340 LGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECP 399
Query: 122 GLSVIDISDNQLQGPVPNS 140
L ++D++ L P+S
Sbjct: 400 QLELLDVAFTHLHVKAPHS 418
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 72 LVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
L ++ LDLSHN L G+ + + +++ L LN++ NN+ P+ + S+I++S N
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Query: 132 QLQGPVPN 139
L N
Sbjct: 557 PLDCTCSN 564
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 66 PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSV 125
P + L L +L L H + + +++SLE+LNLSHNNL + F +H L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
Query: 126 IDISDN 131
+ ++ N
Sbjct: 255 VHLNHN 260
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 62 VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
++++P L LV+L EL+LS N L + SL KL L H ++ N F+ +
Sbjct: 168 LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 122 GLSVIDISDNQL 133
L +++S N L
Sbjct: 227 SLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 66 PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSV 125
P + L L +L L H + + +++SLE+LNLSHNNL + F +H L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
Query: 126 IDISDN 131
+ ++ N
Sbjct: 255 VHLNHN 260
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 62 VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
++++P L LV+L EL+LS N L + SL KL L H ++ N F+ +
Sbjct: 168 LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 122 GLSVIDISDNQL 133
L +++S N L
Sbjct: 227 SLEELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 69 LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI 128
E L L L L+HN+L ++ +L L+L+ N L+ N L ++DI
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDI 533
Query: 129 SDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
S NQL P P+ F + V + NK +C
Sbjct: 534 SRNQLLAPNPD--VFVSLSVLDITHNKFIC 561
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 67 KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVI 126
+ E L L L+L++N + +++L+ LNLS+N L + F G+ ++ I
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 127 DISDNQL 133
D+ N +
Sbjct: 344 DLQKNHI 350
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 2 SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
SLT+L L GN+L LP + L YL+LS N+ S+P N
Sbjct: 53 SLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTN 110
Query: 61 FVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
+Q LP + +KL QL +L L N L + SL+ + L N + P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 36/126 (28%)
Query: 15 GRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKELEKLVQ 74
GR G + YLDL N S+P N F EL L Q
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLK-SLP---------------NGVF-----DELTSLTQ 56
Query: 75 LSELDLSHNFLGGELLSQICN-----MESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDI 128
L +LGG L + N + SL LNLS N L S+PN F+ + L + +
Sbjct: 57 L--------YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107
Query: 129 SDNQLQ 134
+ NQLQ
Sbjct: 108 NTNQLQ 113
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 73 VQLSELDLSHNFLGGELLSQICNMES-LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
VQL LDLSHN L + C+ S L LNLS L +P LSV+D+S N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYN 284
Query: 132 QL-QGPVPN 139
+L + P P+
Sbjct: 285 RLDRNPSPD 293
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
+T L L NQL PT + +L LD N + P+ +N+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS 112
Q + L+ELDL N + + N ++L KL+LSHN LS +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 71 KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI 128
K L++LDLS+N L + SL L+L +NN+ P F G+ L + +
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 66 PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS--------GSIPNCF 117
P L L+ LDLS+N + + +E+LE L+ HNNL+ G N
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFL 532
Query: 118 EGMHGLSVIDISDNQLQ 134
+G+ L ++++ N L
Sbjct: 533 KGLSHLHILNLESNGLD 549
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 6 LILRGNQLTGRLPTEIGSFKELE---YLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L GN+L +I + KEL YL L+ N+ S+P +
Sbjct: 68 LALGGNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 63 QELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
Q LP + +KL L+ L+L+HN L + +L +L+LS+N L F+ +
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 122 GLSVIDISDNQLQGPVPNSTAFR 144
L + + NQL+ VP+ R
Sbjct: 182 QLKDLRLYQNQLKS-VPDGVFDR 203
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 6 LILRGNQLTGRLPTEIGSFKELE---YLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L L GN+L +I + KEL YL L+ N+ S+P +
Sbjct: 68 LALGGNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 63 QELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
Q LP + +KL L+ L L HN L + +L +L+L +N L F+ +
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 122 GLSVIDISDNQLQGPVPNSTAFR 144
L + ++DNQL+ VP+ R
Sbjct: 182 QLKQLSLNDNQLKS-VPDGVFDR 203
>pdb|3QWU|A Chain A, Putative Atp-Dependent Dna Ligase From Aquifex Aeolicus.
pdb|3QWU|B Chain B, Putative Atp-Dependent Dna Ligase From Aquifex Aeolicus
Length = 370
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
N +++E P +++ VQL D G LSQ ME +EK NL H + G E
Sbjct: 138 NPYIEESPPYVKEDVQLFVFDFMKKNEQG-FLSQEEKMELIEKYNLPHVEILGRFTASEE 196
Query: 119 GMHGLSVI 126
G+ + I
Sbjct: 197 GIKKIKEI 204
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 25/94 (26%)
Query: 62 VQELPKELEKLVQLSELDLSHNFLGG----------------ELLSQI--------CNME 97
++E+P L L++L ELDLS N L + SQI N++
Sbjct: 197 LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255
Query: 98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
SL ++NL+HNNL+ + F +H L I + N
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 65 LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124
LP +L L+ LDLS L + ++ SL+ LN+SHNN ++ ++ L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 125 VIDISDNQLQGP-------VPNSTAFRN 145
V+D S N + P+S AF N
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLN 573
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 65 LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124
LP +L L+ LDLS L + ++ SL+ LN+SHNN ++ ++ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 125 VIDISDNQLQGP-------VPNSTAFRN 145
V+D S N + P+S AF N
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLN 549
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 65 LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124
LP +L L+ LDLS L + ++ SL+ LN+SHNN ++ ++ L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 125 VIDISDNQLQGP-------VPNSTAFRN 145
V+D S N + P+S AF N
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLN 254
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
L +L L L+ LP+ + L+ L LSAN+F N N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 63 QELPKE-LEKLVQLSELDLSHNFLGGELLSQICNME-----SLEKLNLSHNNLSGSIPNC 116
EL LE L L ELDLSH+ + S CN++ L+ LNLS+N
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIET---SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 117 FEGMHGLSVIDISDNQLQ 134
F+ L ++D++ +L+
Sbjct: 396 FKECPQLELLDLAFTRLK 413
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 69 LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI 128
+ LV L L+LS+N + S + + L+++ L L+ P F G++ L V+++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 129 SDNQL 133
S NQL
Sbjct: 304 SGNQL 308
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 68 ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127
E L EL+L+ N + N+ +L L L N L F G+ L+ +D
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 128 ISDNQL 133
IS+N++
Sbjct: 111 ISENKI 116
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 3 LTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
L +L L NQL G LP + S +L LDL N+ +P
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNK 123
Query: 62 VQELPKELEKLVQLSELDLSHNFL 85
+ ELP+ +E+L L+ L L N L
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQL 147
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF-EGMHGLSVIDISDNQL 133
L E+DLS+N L + M+ LE+L +S+N L N + + + L V+D+S N L
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 313
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132
V+L+ L L HN L + + N L +++LS+N L + + F M L + IS+N+
Sbjct: 232 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 133 LQG------PVP 138
L P+P
Sbjct: 290 LVALNLYGQPIP 301
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 58 NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
+N+ + +PK+L + L LS N + + I + L L LSHN + + F
Sbjct: 39 SNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96
Query: 118 EGMHGLSVIDISDNQLQG 135
L +D+S N+LQ
Sbjct: 97 LFNQDLEYLDVSHNRLQN 114
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137
L+LS N L G + C ++ L+L HNN SIP + L ++++ NQL+ V
Sbjct: 433 LNLSSNMLTGSVFR--CLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS-V 488
Query: 138 PN 139
P+
Sbjct: 489 PD 490
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 64 ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGL 123
+PK+L + + + L++S N++ S I ++ L L +SHN + + F+ L
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 124 SVIDISDNQL 133
+D+S N+L
Sbjct: 72 EYLDLSHNKL 81
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF-EGMHGLSVIDISDNQL 133
L E+DLS+N L + M+ LE+L +S+N L N + + + L V+D+S N L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 307
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132
V+L+ L L HN L + + N L +++LS+N L + + F M L + IS+N+
Sbjct: 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 133 LQG------PVP 138
L P+P
Sbjct: 284 LVALNLYGQPIP 295
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 115 NCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK-----ELCGGVKGMQPCKV 169
+C EG ++ S+ +QG R LE ++ EL GV G C
Sbjct: 221 SCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSC 280
Query: 170 FSSHKQNSGAKWFAIVFP 187
+ S + A WF + FP
Sbjct: 281 YGSAPMHGFAIWFQVTFP 298
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 96 MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP------VPNSTAFRN 145
+ L+ LN+SHNNL + + ++ LS +D S N+++ P S AF N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 546
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 96 MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP------VPNSTAFRN 145
+ L+ LN+SHNNL + + ++ LS +D S N+++ P S AF N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
+L +L L NQL P S +L YL L N S+PK N
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQ 168
Query: 62 VQELPK-ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
++ +P+ +KL +L L L +N L ++E L+ L L N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 58 NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-C 116
+NQ + P ++L QL+ LDL +N L + L +L+L+ N L SIP
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGA 105
Query: 117 FEGMHGLSVIDISDN 131
F+ + L+ I + +N
Sbjct: 106 FDNLKSLTHIWLLNN 120
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
LT L L N L LE LDLS N SV + +
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 63 QEL-PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
QEL P L L L L N L ++ +L L L N +S F G+H
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 122 GLSVIDISDNQLQGPVPNSTAFRN 145
L + + N++ P+ AFR+
Sbjct: 177 SLDRLLLHQNRVAHVHPH--AFRD 198
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 108 NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNA 146
N+S S PN FEG+ I + DNQ+ V S F+ A
Sbjct: 35 NVSASCPNHFEGLFRYKSIPVEDNQM---VEISAWFQEA 70
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
LT L L N L LE LDLS N SV + +
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 63 QEL-PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
QEL P L L L L N L ++ +L L L N +S F G+H
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 122 GLSVIDISDNQLQGPVPNSTAFRN 145
L + + N++ P+ AFR+
Sbjct: 178 SLDRLLLHQNRVAHVHPH--AFRD 199
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 6 LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQEL 65
L L+ N++T + + K L L L N+ + P NQ +EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 66 PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPN-CFEGMHGL 123
P+++ K +Q EL + N + S + + + L N L S I N F+GM L
Sbjct: 116 PEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 124 SVIDISDNQL----QGPVPNSTAFRNAPVEALEGNK 155
S I I+D + QG P+ T L+GNK
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELH------LDGNK 203
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 6 LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQEL 65
L L+ N++T + + K L L L N+ + P NQ +EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 66 PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPN-CFEGMHGL 123
P+++ K +Q EL + N + S + + + L N L S I N F+GM L
Sbjct: 116 PEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 124 SVIDISDNQL----QGPVPNSTAFRNAPVEALEGNK 155
S I I+D + QG P+ T L+GNK
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELH------LDGNK 203
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 58 NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-C 116
+NQ + P ++L QL+ LDL +N L + L +L+L+ N L SIP
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGA 97
Query: 117 FEGMHGLSVIDISDN 131
F+ + L+ I + +N
Sbjct: 98 FDNLKSLTHIWLLNN 112
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 59 NQFVQELPKELEKLVQLSELDLSHN-FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
NQ + ++P+ + + +EL L++N F E + L K+N S+N ++ F
Sbjct: 20 NQKLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77
Query: 118 EGMHGLSVIDISDNQLQ 134
EG G++ I ++ N+L+
Sbjct: 78 EGASGVNEILLTSNRLE 94
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 71 KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 130
+L L +L+L N L G + +++L L N + F G+H L +++ D
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 131 NQLQGPVPNSTAFRNA 146
NQ+ +P S N+
Sbjct: 112 NQISCVMPGSFEHLNS 127
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
DLS + + L S + LE+L L+ N ++ N F G+ L + + NQL+ VP
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VP 339
Query: 139 N 139
+
Sbjct: 340 D 340
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
+ ++ S+ NL GS G G S + + D + VP ST F + A E EL
Sbjct: 398 MAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELA 457
Query: 159 GGVKGMQPCKVFSSHKQNS 177
KG+ C + +S +N+
Sbjct: 458 ANTKGI--CFIRTSRPENA 474
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 95 NMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQG 135
N L++LNLS NN +PN F G G ++DIS ++
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
+ ELDLS N L + + LE LNLS N L ++ E + L +D+++N +Q
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 95 NMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQG 135
N L++LNLS NN +PN F G G ++DIS ++
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN 35
+T L L G +GR+P IG ELE L L ++
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,465,741
Number of Sequences: 62578
Number of extensions: 202092
Number of successful extensions: 788
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 243
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)