Query 048618
Match_columns 207
No_of_seqs 186 out of 2224
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 11:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3E-24 6.6E-29 188.4 16.7 160 2-162 453-612 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.9E-19 4.1E-24 158.3 15.2 157 2-158 405-585 (968)
3 PLN03150 hypothetical protein; 99.7 1.1E-16 2.4E-21 134.1 13.3 117 51-168 420-538 (623)
4 KOG4194 Membrane glycoprotein 99.7 1E-18 2.2E-23 139.4 -0.1 160 2-161 294-456 (873)
5 KOG4194 Membrane glycoprotein 99.7 1.9E-17 4.1E-22 132.3 3.3 153 2-154 174-351 (873)
6 KOG0617 Ras suppressor protein 99.7 5.9E-19 1.3E-23 121.1 -5.1 135 2-140 57-192 (264)
7 KOG4237 Extracellular matrix p 99.6 1.2E-16 2.6E-21 122.3 3.4 159 2-160 68-362 (498)
8 KOG0617 Ras suppressor protein 99.6 3E-18 6.5E-23 117.6 -5.3 151 2-156 34-185 (264)
9 KOG0444 Cytoskeletal regulator 99.5 2.2E-15 4.8E-20 121.9 -0.0 149 2-153 104-277 (1255)
10 KOG0444 Cytoskeletal regulator 99.5 2E-15 4.4E-20 122.1 -0.6 155 2-159 127-306 (1255)
11 PLN03150 hypothetical protein; 99.5 2.2E-13 4.8E-18 114.4 10.1 113 26-138 419-532 (623)
12 KOG4237 Extracellular matrix p 99.5 4.2E-14 9.1E-19 108.5 4.3 95 45-139 270-364 (498)
13 PF14580 LRR_9: Leucine-rich r 99.5 7.9E-14 1.7E-18 98.2 5.2 112 21-136 15-128 (175)
14 PF14580 LRR_9: Leucine-rich r 99.4 9.2E-13 2E-17 92.8 6.4 123 2-128 20-147 (175)
15 KOG0618 Serine/threonine phosp 99.4 6.4E-14 1.4E-18 117.2 -0.1 129 25-156 359-488 (1081)
16 KOG0472 Leucine-rich repeat pr 99.4 1.2E-13 2.6E-18 106.4 0.1 114 18-134 428-541 (565)
17 cd00116 LRR_RI Leucine-rich re 99.3 2E-12 4.4E-17 100.4 5.3 133 2-134 82-234 (319)
18 KOG0472 Leucine-rich repeat pr 99.3 2.5E-13 5.3E-18 104.7 -1.2 151 3-157 390-541 (565)
19 cd00116 LRR_RI Leucine-rich re 99.3 2.9E-12 6.2E-17 99.5 4.4 154 2-155 52-232 (319)
20 KOG0618 Serine/threonine phosp 99.3 5.2E-13 1.1E-17 111.9 0.1 128 3-133 361-488 (1081)
21 PLN03210 Resistant to P. syrin 99.3 6.2E-11 1.4E-15 106.1 12.7 55 98-152 779-833 (1153)
22 KOG1259 Nischarin, modulator o 99.2 1.4E-12 2.9E-17 97.5 -0.1 132 2-139 285-417 (490)
23 PF13855 LRR_8: Leucine rich r 99.2 8.5E-12 1.8E-16 72.9 3.0 60 1-60 1-60 (61)
24 PF13855 LRR_8: Leucine rich r 99.2 9.4E-12 2E-16 72.8 2.4 61 25-85 1-61 (61)
25 PLN03210 Resistant to P. syrin 99.2 2.2E-10 4.8E-15 102.7 11.1 126 2-132 779-904 (1153)
26 PRK15370 E3 ubiquitin-protein 99.1 2.9E-10 6.2E-15 96.9 8.8 97 2-110 200-296 (754)
27 PRK15370 E3 ubiquitin-protein 99.1 2E-10 4.3E-15 97.8 7.8 140 2-156 221-379 (754)
28 PRK15387 E3 ubiquitin-protein 99.1 1.8E-10 3.8E-15 98.0 6.9 128 2-139 303-463 (788)
29 KOG0532 Leucine-rich repeat (L 99.0 6.3E-12 1.4E-16 100.7 -4.2 108 27-139 145-252 (722)
30 PRK15387 E3 ubiquitin-protein 99.0 8.1E-10 1.8E-14 94.0 8.0 142 2-157 283-458 (788)
31 KOG0532 Leucine-rich repeat (L 99.0 3.2E-11 7E-16 96.8 -0.4 124 3-132 145-271 (722)
32 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 89.8 4.5 146 3-154 118-287 (394)
33 KOG1259 Nischarin, modulator o 98.9 2.4E-10 5.2E-15 85.6 -0.1 107 1-112 307-414 (490)
34 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.2E-14 85.8 5.0 125 5-134 97-222 (394)
35 KOG1859 Leucine-rich repeat pr 98.8 5.3E-11 1.2E-15 98.1 -7.5 128 3-137 166-295 (1096)
36 KOG3207 Beta-tubulin folding c 98.8 2.9E-09 6.2E-14 83.2 1.7 112 24-135 196-315 (505)
37 KOG3207 Beta-tubulin folding c 98.7 4.9E-09 1.1E-13 82.0 1.0 150 2-152 122-279 (505)
38 KOG1909 Ran GTPase-activating 98.6 1.8E-08 3.9E-13 76.7 2.2 132 2-133 158-310 (382)
39 KOG4579 Leucine-rich repeat (L 98.6 2.2E-09 4.7E-14 71.5 -3.2 104 27-134 29-136 (177)
40 KOG1644 U2-associated snRNP A' 98.5 2.1E-07 4.6E-12 66.1 5.9 124 4-130 22-149 (233)
41 KOG1859 Leucine-rich repeat pr 98.5 1.2E-09 2.6E-14 90.4 -6.4 127 27-159 166-294 (1096)
42 KOG1909 Ran GTPase-activating 98.5 8.9E-08 1.9E-12 73.1 3.9 132 2-133 93-253 (382)
43 KOG4658 Apoptotic ATPase [Sign 98.5 1.1E-07 2.4E-12 82.6 3.5 103 3-106 547-651 (889)
44 KOG4579 Leucine-rich repeat (L 98.5 1.6E-08 3.4E-13 67.5 -1.5 132 3-139 29-164 (177)
45 KOG0531 Protein phosphatase 1, 98.4 2.7E-08 5.8E-13 80.3 -0.6 125 2-134 96-221 (414)
46 KOG4658 Apoptotic ATPase [Sign 98.4 2.6E-07 5.6E-12 80.4 5.2 127 3-132 525-653 (889)
47 KOG0531 Protein phosphatase 1, 98.4 4.7E-08 1E-12 78.9 0.2 125 3-134 74-199 (414)
48 PF12799 LRR_4: Leucine Rich r 98.4 3E-07 6.6E-12 49.5 2.6 37 1-38 1-37 (44)
49 KOG1644 U2-associated snRNP A' 98.3 1.2E-06 2.7E-11 62.2 5.0 109 24-135 18-127 (233)
50 PF12799 LRR_4: Leucine Rich r 98.3 1.6E-06 3.4E-11 46.8 3.6 36 26-62 2-37 (44)
51 KOG3665 ZYG-1-like serine/thre 98.2 2.3E-06 5E-11 72.8 4.6 132 2-135 123-264 (699)
52 KOG2120 SCF ubiquitin ligase, 98.1 1.8E-06 3.9E-11 65.1 1.7 61 2-62 211-273 (419)
53 KOG2123 Uncharacterized conser 98.0 5.1E-07 1.1E-11 67.3 -2.7 100 24-127 18-123 (388)
54 KOG2739 Leucine-rich acidic nu 98.0 3.2E-06 6.9E-11 62.3 1.5 109 16-128 34-150 (260)
55 PF13306 LRR_5: Leucine rich r 97.9 2.7E-05 5.9E-10 52.2 5.9 106 19-129 6-111 (129)
56 KOG2123 Uncharacterized conser 97.8 1.4E-06 3.1E-11 65.0 -2.9 98 2-103 20-123 (388)
57 PRK15386 type III secretion pr 97.8 0.0002 4.3E-09 57.2 8.6 71 2-84 53-123 (426)
58 KOG2982 Uncharacterized conser 97.7 8.3E-06 1.8E-10 61.6 0.6 82 2-83 72-156 (418)
59 KOG2120 SCF ubiquitin ligase, 97.7 1.1E-06 2.3E-11 66.3 -4.2 131 2-132 186-324 (419)
60 KOG3665 ZYG-1-like serine/thre 97.7 3E-05 6.5E-10 66.2 3.5 125 1-127 148-281 (699)
61 KOG2982 Uncharacterized conser 97.6 1.2E-05 2.6E-10 60.7 0.0 106 26-131 46-156 (418)
62 PF13306 LRR_5: Leucine rich r 97.5 0.0002 4.3E-09 47.9 4.8 117 2-124 13-129 (129)
63 COG5238 RNA1 Ran GTPase-activa 97.5 0.00029 6.2E-09 52.9 5.6 133 1-133 92-254 (388)
64 KOG2739 Leucine-rich acidic nu 97.4 0.00013 2.9E-09 54.0 2.9 100 3-104 45-150 (260)
65 PRK15386 type III secretion pr 96.9 0.0049 1.1E-07 49.4 7.3 100 22-134 49-169 (426)
66 PF00560 LRR_1: Leucine Rich R 96.7 0.00073 1.6E-08 30.4 0.7 21 2-23 1-21 (22)
67 COG5238 RNA1 Ran GTPase-activa 96.5 0.0088 1.9E-07 45.2 6.1 84 2-85 31-132 (388)
68 PF08693 SKG6: Transmembrane a 96.1 0.0051 1.1E-07 31.8 2.0 27 181-207 14-40 (40)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0027 5.9E-08 28.5 0.8 10 52-61 3-12 (22)
70 PF13504 LRR_7: Leucine rich r 95.0 0.014 3.1E-07 24.3 1.1 13 2-14 2-14 (17)
71 PF01102 Glycophorin_A: Glycop 95.0 0.02 4.4E-07 37.8 2.2 28 180-207 65-92 (122)
72 PTZ00382 Variant-specific surf 94.9 0.035 7.5E-07 35.2 3.1 28 180-207 67-95 (96)
73 KOG1947 Leucine rich repeat pr 94.9 0.027 5.9E-07 46.2 3.4 60 72-131 242-305 (482)
74 KOG3864 Uncharacterized conser 94.7 0.0062 1.3E-07 43.8 -0.7 83 50-132 102-187 (221)
75 smart00370 LRR Leucine-rich re 94.2 0.05 1.1E-06 25.2 2.1 11 51-61 4-14 (26)
76 smart00369 LRR_TYP Leucine-ric 94.2 0.05 1.1E-06 25.2 2.1 11 51-61 4-14 (26)
77 KOG4308 LRR-containing protein 94.1 0.00089 1.9E-08 55.0 -6.9 113 22-134 169-303 (478)
78 TIGR01478 STEVOR variant surfa 94.1 0.043 9.3E-07 41.3 2.5 27 181-207 260-286 (295)
79 PTZ00370 STEVOR; Provisional 94.0 0.045 9.7E-07 41.3 2.5 27 181-207 256-282 (296)
80 smart00369 LRR_TYP Leucine-ric 94.0 0.06 1.3E-06 24.9 2.1 22 24-45 1-22 (26)
81 smart00370 LRR Leucine-rich re 94.0 0.06 1.3E-06 24.9 2.1 22 24-45 1-22 (26)
82 PF14991 MLANA: Protein melan- 93.9 0.011 2.4E-07 37.9 -0.7 23 185-207 28-50 (118)
83 KOG1947 Leucine rich repeat pr 93.9 0.053 1.1E-06 44.5 3.0 90 20-109 209-307 (482)
84 KOG0473 Leucine-rich repeat pr 93.3 0.0013 2.9E-08 48.3 -6.3 87 21-110 38-124 (326)
85 KOG0473 Leucine-rich repeat pr 92.9 0.0011 2.3E-08 48.8 -7.3 88 43-133 36-123 (326)
86 PF04478 Mid2: Mid2 like cell 92.8 0.053 1.2E-06 37.0 1.2 27 180-206 50-76 (154)
87 TIGR00864 PCC polycystin catio 92.7 0.077 1.7E-06 51.7 2.3 38 103-140 1-38 (2740)
88 PF13516 LRR_6: Leucine Rich r 92.3 0.049 1.1E-06 24.7 0.3 13 74-86 3-15 (24)
89 PF15102 TMEM154: TMEM154 prot 91.8 0.21 4.7E-06 33.9 3.1 27 180-206 57-84 (146)
90 KOG4308 LRR-containing protein 91.4 0.0026 5.6E-08 52.3 -7.7 108 3-110 89-217 (478)
91 PF02439 Adeno_E3_CR2: Adenovi 91.2 0.31 6.7E-06 24.8 2.5 12 184-195 8-19 (38)
92 KOG3864 Uncharacterized conser 90.7 0.077 1.7E-06 38.3 0.2 85 24-108 100-187 (221)
93 PF02009 Rifin_STEVOR: Rifin/s 88.9 0.4 8.6E-06 37.1 2.7 16 191-206 268-283 (299)
94 PF12191 stn_TNFRSF12A: Tumour 88.1 0.29 6.3E-06 32.2 1.3 12 158-169 55-66 (129)
95 PF01034 Syndecan: Syndecan do 87.5 0.18 4E-06 29.0 0.1 7 200-206 32-38 (64)
96 PHA03265 envelope glycoprotein 86.6 0.57 1.2E-05 36.6 2.3 27 181-207 349-375 (402)
97 PF01299 Lamp: Lysosome-associ 86.4 0.49 1.1E-05 36.9 2.0 27 181-207 272-298 (306)
98 KOG3763 mRNA export factor TAP 86.1 0.5 1.1E-05 39.3 1.9 64 47-111 216-284 (585)
99 PF08374 Protocadherin: Protoc 86.0 0.73 1.6E-05 33.5 2.5 25 181-205 40-64 (221)
100 PF05624 LSR: Lipolysis stimul 85.7 1.9 4.1E-05 22.9 3.3 22 181-202 2-23 (49)
101 smart00368 LRR_RI Leucine rich 84.8 1 2.2E-05 21.2 2.0 14 74-87 3-16 (28)
102 smart00365 LRR_SD22 Leucine-ri 84.3 0.91 2E-05 21.2 1.6 13 2-14 3-15 (26)
103 KOG4341 F-box protein containi 83.5 0.76 1.7E-05 37.1 1.8 112 22-133 317-438 (483)
104 PF06365 CD34_antigen: CD34/Po 83.2 2.9 6.4E-05 30.3 4.5 26 182-207 101-128 (202)
105 PF12191 stn_TNFRSF12A: Tumour 81.4 0.72 1.6E-05 30.4 0.8 8 199-206 99-106 (129)
106 smart00364 LRR_BAC Leucine-ric 79.7 1.5 3.2E-05 20.4 1.4 13 2-14 3-15 (26)
107 PTZ00046 rifin; Provisional 79.1 2.3 5E-05 33.7 3.1 7 201-207 337-343 (358)
108 TIGR01477 RIFIN variant surfac 79.0 2.3 5E-05 33.6 3.0 7 201-207 332-338 (353)
109 PF05454 DAG1: Dystroglycan (D 78.0 0.7 1.5E-05 35.5 0.0 12 196-207 162-173 (290)
110 PF05545 FixQ: Cbb3-type cytoc 76.4 4.8 0.0001 21.8 3.1 6 200-205 26-31 (49)
111 PRK00523 hypothetical protein; 76.1 2.5 5.5E-05 25.0 2.0 25 182-206 4-28 (72)
112 PF02529 PetG: Cytochrome B6-F 75.1 5.3 0.00012 20.1 2.7 25 182-206 7-31 (37)
113 KOG3763 mRNA export factor TAP 74.5 2.4 5.2E-05 35.5 2.2 64 71-136 216-285 (585)
114 PF14610 DUF4448: Protein of u 73.5 3 6.5E-05 30.0 2.3 28 179-206 157-184 (189)
115 PF08374 Protocadherin: Protoc 73.4 2.4 5.2E-05 30.9 1.7 29 178-206 34-62 (221)
116 CHL00008 petG cytochrome b6/f 72.0 7 0.00015 19.6 2.6 25 182-206 7-31 (37)
117 PF12877 DUF3827: Domain of un 71.2 9.8 0.00021 32.6 4.9 29 178-206 267-296 (684)
118 PRK00665 petG cytochrome b6-f 70.9 7.5 0.00016 19.5 2.6 25 182-206 7-31 (37)
119 PF03302 VSP: Giardia variant- 69.6 5.2 0.00011 32.5 3.0 26 181-206 369-395 (397)
120 PF11857 DUF3377: Domain of un 66.3 12 0.00027 22.3 3.3 30 178-207 28-57 (74)
121 PF05337 CSF-1: Macrophage col 66.2 1.9 4.2E-05 32.6 0.0 27 181-207 227-253 (285)
122 PHA03049 IMV membrane protein; 66.2 12 0.00025 21.8 3.1 17 190-206 9-25 (68)
123 PF05961 Chordopox_A13L: Chord 64.8 13 0.00027 21.7 3.1 16 190-205 9-24 (68)
124 PF15176 LRR19-TM: Leucine-ric 64.4 14 0.00031 23.4 3.6 21 178-198 14-34 (102)
125 PF03908 Sec20: Sec20; InterP 63.6 10 0.00022 23.7 2.9 15 192-206 77-91 (92)
126 PRK01844 hypothetical protein; 62.0 9.6 0.00021 22.6 2.4 16 190-205 11-26 (72)
127 KOG4341 F-box protein containi 61.0 8.3 0.00018 31.4 2.6 108 1-108 320-437 (483)
128 PF10954 DUF2755: Protein of u 61.0 14 0.0003 22.9 3.0 21 187-207 79-99 (100)
129 PF06024 DUF912: Nucleopolyhed 59.6 3 6.4E-05 26.7 -0.0 18 181-198 61-78 (101)
130 PF07204 Orthoreo_P10: Orthore 59.1 4.4 9.4E-05 25.3 0.6 25 180-205 41-65 (98)
131 PF06024 DUF912: Nucleopolyhed 58.3 10 0.00022 24.2 2.3 33 175-207 58-90 (101)
132 smart00367 LRR_CC Leucine-rich 58.2 8.3 0.00018 17.5 1.4 11 25-35 2-12 (26)
133 PF11353 DUF3153: Protein of u 58.0 14 0.00031 27.0 3.3 27 181-207 180-206 (209)
134 PF15345 TMEM51: Transmembrane 56.7 19 0.00041 26.8 3.6 26 181-207 60-85 (233)
135 TIGR00864 PCC polycystin catio 55.4 9.7 0.00021 38.4 2.5 31 31-61 1-31 (2740)
136 PF15012 DUF4519: Domain of un 53.5 7.4 0.00016 21.8 0.9 22 181-202 30-51 (56)
137 PF06679 DUF1180: Protein of u 51.3 19 0.00041 25.3 2.8 23 184-206 99-121 (163)
138 PF07010 Endomucin: Endomucin; 50.9 21 0.00046 26.4 3.1 19 181-199 190-208 (259)
139 COG3763 Uncharacterized protei 50.8 19 0.00041 21.2 2.3 14 193-206 14-27 (71)
140 PF10812 DUF2561: Protein of u 50.5 44 0.00095 24.2 4.5 32 174-205 57-88 (207)
141 TIGR03141 cytochro_ccmD heme e 50.3 16 0.00036 19.4 1.9 22 183-204 7-28 (45)
142 PF09451 ATG27: Autophagy-rela 48.4 25 0.00055 26.9 3.4 26 181-206 202-227 (268)
143 PF05808 Podoplanin: Podoplani 47.7 6.1 0.00013 27.5 0.0 25 181-205 131-155 (162)
144 TIGR03521 GldG gliding-associa 46.1 13 0.00028 31.7 1.7 17 191-207 534-550 (552)
145 PF10661 EssA: WXG100 protein 45.1 25 0.00054 24.2 2.6 17 183-199 120-136 (145)
146 PF13908 Shisa: Wnt and FGF in 44.9 15 0.00033 26.1 1.6 11 181-191 81-91 (179)
147 PF03302 VSP: Giardia variant- 44.9 14 0.00031 30.0 1.7 27 180-206 365-391 (397)
148 PF14654 Epiglycanin_C: Mucin, 42.3 41 0.00088 21.3 3.0 24 181-204 18-41 (106)
149 PHA03164 hypothetical protein; 42.2 15 0.00032 22.0 1.0 18 183-200 60-77 (88)
150 PF03988 DUF347: Repeat of Unk 42.2 43 0.00093 18.7 2.9 6 199-204 44-49 (55)
151 PF01708 Gemini_mov: Geminivir 40.8 35 0.00076 21.2 2.5 8 181-188 34-41 (91)
152 TIGR03382 GC_trans_RRR Myxococ 40.1 44 0.00095 15.7 2.5 10 198-207 18-27 (27)
153 PTZ00087 thrombosponding-relat 40.1 76 0.0016 24.3 4.6 11 181-191 298-308 (340)
154 PF10389 CoatB: Bacteriophage 39.7 40 0.00087 18.1 2.3 17 190-206 27-43 (46)
155 KOG1219 Uncharacterized conser 39.6 1.3E+02 0.0029 31.1 7.0 17 124-140 3915-3931(4289)
156 PF04639 Baculo_E56: Baculovir 39.2 34 0.00074 26.3 2.8 18 181-198 276-293 (305)
157 PF10873 DUF2668: Protein of u 39.2 53 0.0011 22.5 3.4 24 176-199 58-81 (155)
158 COG4736 CcoQ Cbb3-type cytochr 38.7 58 0.0013 18.7 3.0 6 200-205 26-31 (60)
159 PF04995 CcmD: Heme exporter p 38.6 24 0.00053 18.8 1.5 16 184-199 7-22 (46)
160 PF05084 GRA6: Granule antigen 38.2 45 0.00098 23.3 3.0 18 188-205 156-173 (215)
161 TIGR03063 srtB_target sortase 34.3 60 0.0013 15.5 2.7 7 201-207 23-29 (29)
162 PRK10132 hypothetical protein; 34.2 63 0.0014 21.0 3.1 7 201-207 102-108 (108)
163 PF11431 Transport_MerF: Membr 33.9 49 0.0011 17.7 2.1 11 196-206 34-44 (46)
164 PF05297 Herpes_LMP1: Herpesvi 33.8 14 0.0003 28.5 0.0 8 200-207 68-75 (381)
165 PHA02955 hypothetical protein; 33.7 48 0.001 24.3 2.7 10 122-131 119-128 (213)
166 KOG2678 Predicted membrane pro 32.9 20 0.00043 26.5 0.7 32 174-205 210-241 (244)
167 PRK09546 zntB zinc transporter 32.8 50 0.0011 26.0 3.0 20 188-207 303-322 (324)
168 PF10577 UPF0560: Uncharacteri 31.5 43 0.00094 29.8 2.6 18 188-205 282-299 (807)
169 PTZ00208 65 kDa invariant surf 31.4 20 0.00043 29.0 0.5 9 199-207 406-414 (436)
170 PF02060 ISK_Channel: Slow vol 31.2 58 0.0012 21.8 2.5 24 181-204 44-67 (129)
171 PF15431 TMEM190: Transmembran 30.7 63 0.0014 21.0 2.6 20 188-207 68-87 (134)
172 PF11980 DUF3481: Domain of un 30.0 56 0.0012 20.0 2.2 15 180-194 15-29 (87)
173 TIGR00383 corA magnesium Mg(2+ 29.5 55 0.0012 25.5 2.7 25 183-207 292-316 (318)
174 PF07413 Herpes_UL37_2: Betahe 29.2 52 0.0011 25.4 2.4 28 180-207 243-270 (276)
175 PRK15348 type III secretion sy 29.2 61 0.0013 24.6 2.8 6 201-206 243-248 (249)
176 COG3197 FixS Uncharacterized p 29.0 1.2E+02 0.0025 17.2 3.4 14 182-195 4-17 (58)
177 PF06716 DUF1201: Protein of u 28.7 1E+02 0.0022 16.5 2.8 8 198-205 26-33 (54)
178 PRK11486 flagellar biosynthesi 28.0 95 0.0021 20.8 3.2 14 191-204 27-40 (124)
179 PF02009 Rifin_STEVOR: Rifin/s 27.4 63 0.0014 25.3 2.6 24 182-205 256-279 (299)
180 KOG2052 Activin A type IB rece 27.3 1.5E+02 0.0033 24.8 4.7 14 122-135 76-89 (513)
181 TIGR03503 conserved hypothetic 26.4 15 0.00031 29.6 -1.0 20 188-207 353-372 (374)
182 PF10176 DUF2370: Protein of u 26.3 66 0.0014 24.1 2.4 31 176-206 190-220 (233)
183 COG0598 CorA Mg2+ and Co2+ tra 25.9 82 0.0018 24.8 3.1 19 188-206 301-319 (322)
184 PF12768 Rax2: Cortical protei 25.6 92 0.002 24.1 3.2 6 201-206 252-257 (281)
185 PF10717 ODV-E18: Occlusion-de 25.5 1.1E+02 0.0024 18.8 2.8 12 188-199 30-41 (85)
186 PF10856 DUF2678: Protein of u 25.3 58 0.0012 21.4 1.7 11 195-205 73-83 (118)
187 PF11384 DUF3188: Protein of u 25.0 1.2E+02 0.0026 16.5 2.7 26 181-206 23-48 (49)
188 COG3088 CcmH Uncharacterized p 24.5 90 0.0019 21.6 2.6 16 184-199 106-121 (153)
189 PF03918 CcmH: Cytochrome C bi 24.3 28 0.00061 24.0 0.2 19 178-196 99-117 (148)
190 PF02038 ATP1G1_PLM_MAT8: ATP1 23.8 1.1E+02 0.0024 16.8 2.4 18 183-200 15-32 (50)
191 PF02404 SCF: Stem cell factor 23.6 27 0.00058 26.5 0.0 23 181-203 215-237 (273)
192 TIGR03867 MprA_tail MprA prote 22.9 1E+02 0.0022 14.4 2.9 9 199-207 19-27 (27)
193 COG1314 SecG Preprotein transl 22.4 1.5E+02 0.0032 18.4 3.1 20 187-206 56-75 (86)
194 PRK11085 magnesium/nickel/coba 22.2 91 0.002 24.6 2.7 20 188-207 295-314 (316)
195 PF10669 Phage_Gp23: Protein g 22.2 1.3E+02 0.0027 19.1 2.7 14 191-204 25-38 (121)
196 PF13703 PepSY_TM_2: PepSY-ass 21.9 76 0.0016 19.5 1.8 21 182-202 16-36 (88)
197 PF14126 DUF4293: Domain of un 21.6 1E+02 0.0023 21.2 2.6 23 185-207 55-77 (149)
198 PRK09174 F0F1 ATP synthase sub 21.5 1.1E+02 0.0024 22.4 2.8 24 181-204 52-75 (204)
199 TIGR01477 RIFIN variant surfac 21.4 1E+02 0.0022 24.7 2.7 22 182-203 310-331 (353)
200 PTZ00046 rifin; Provisional 21.3 1E+02 0.0022 24.8 2.7 22 182-203 315-336 (358)
201 PF01544 CorA: CorA-like Mg2+ 21.0 81 0.0018 23.9 2.2 10 196-205 282-291 (292)
202 PF11174 DUF2970: Protein of u 20.6 1.6E+02 0.0035 16.5 2.8 19 181-199 31-49 (56)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3e-24 Score=188.42 Aligned_cols=160 Identities=43% Similarity=0.669 Sum_probs=137.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+.+..|..+ ...+|+.|++++|++.+..|..+.++++|+.|++++|.+.+..|+.+..+++|+.|+++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 531 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence 45666666666665555543 35677888888888888888888899999999999999998999999999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 161 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 161 (207)
+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.+++++|++.+.+|....+..+....+.+|+.+|+..
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999988877778888889999999865
Q ss_pred C
Q 048618 162 K 162 (207)
Q Consensus 162 ~ 162 (207)
+
T Consensus 612 ~ 612 (968)
T PLN00113 612 T 612 (968)
T ss_pred c
Confidence 3
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.9e-19 Score=158.34 Aligned_cols=157 Identities=34% Similarity=0.517 Sum_probs=118.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcC-----------------------CCCCCeeeccC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGS-----------------------LLKLHYLSLSN 58 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----------------------l~~L~~L~l~~ 58 (207)
+|+.|++++|.+++..|..+.+++.|+.|++++|.+.+.++..+.. .++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 4555666666665555555555555555555555555444443333 35566677777
Q ss_pred CcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618 59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 59 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
|++.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 77777778888888899999999999988889999999999999999999999999999999999999999999998777
Q ss_pred CC-cccCCCCcccccCCCCCC
Q 048618 139 NS-TAFRNAPVEALEGNKELC 158 (207)
Q Consensus 139 ~~-~~~~~~~~~~~~~n~~~c 158 (207)
.. ..+..+..+++.+|...+
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred hhHhcCcccCEEeccCCccee
Confidence 65 556677888888877554
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=134.09 Aligned_cols=117 Identities=29% Similarity=0.537 Sum_probs=92.0
Q ss_pred CCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618 51 LHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 130 (207)
Q Consensus 51 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 130 (207)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCcccCCCCcc--cCCCCcccccCCCCCCCCCCCCCCCc
Q 048618 131 NQLQGPVPNSTA--FRNAPVEALEGNKELCGGVKGMQPCK 168 (207)
Q Consensus 131 n~~~~~~~~~~~--~~~~~~~~~~~n~~~c~~~~~~~~~~ 168 (207)
|++++.+|.... ...+....+.+|..+|+.+ ....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC-CCCCCc
Confidence 888888776522 2334556778888888743 345564
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1e-18 Score=139.38 Aligned_cols=160 Identities=27% Similarity=0.278 Sum_probs=127.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|+|++|.|..+.+++..-.+.|++|+|++|+|+...+..|..+..|++|+|+.|.+...-...|..+.+|+.|+|+
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 56778888888887777777777888888888888887777778888888888888888877667778888888888888
Q ss_pred CCCCCCchh---HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCC
Q 048618 82 HNFLGGELL---SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158 (207)
Q Consensus 82 ~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c 158 (207)
+|.+.+.+. ..|.++++|+.|++.+|++......+|.++.+|++||+.+|.+-..-+..+.-..++.+.+.....+|
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLC 453 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEE
Confidence 888766433 45667888888889898888777788889999999999999888777777655577777778888888
Q ss_pred CCC
Q 048618 159 GGV 161 (207)
Q Consensus 159 ~~~ 161 (207)
++.
T Consensus 454 DCq 456 (873)
T KOG4194|consen 454 DCQ 456 (873)
T ss_pred ecc
Confidence 753
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.9e-17 Score=132.30 Aligned_cols=153 Identities=25% Similarity=0.254 Sum_probs=96.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCC--------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLV-------- 73 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------- 73 (207)
++++|+|++|+|+..-...|.++.+|..|.|++|+++...+..|.++++|+.|+|..|.+.-.---.|++++
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 578888888888888888888888888888888888877777888888888888888876432223344444
Q ss_pred ----------------CCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618 74 ----------------QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137 (207)
Q Consensus 74 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 137 (207)
.+++|+|+.|+++..-.+.+.+++.|+.|+|++|.|....++.|...++|++|++++|.++...
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 4555555555544333344445555555555555555555555655666666666666665544
Q ss_pred CCC-cccCCCCcccccCC
Q 048618 138 PNS-TAFRNAPVEALEGN 154 (207)
Q Consensus 138 ~~~-~~~~~~~~~~~~~n 154 (207)
+.. ..+..+..+.++.|
T Consensus 334 ~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHN 351 (873)
T ss_pred hhHHHHHHHhhhhccccc
Confidence 443 33344444444444
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=5.9e-19 Score=121.06 Aligned_cols=135 Identities=30% Similarity=0.453 Sum_probs=83.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l 80 (207)
+|+.|++.+|.|+ ++|.++..++.|+.|++..|++. ..|..|+.++.|+.||+++|++.. .+|+.|.-++.|+.|++
T Consensus 57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 4455555555555 45555555666666665555554 555666666666666666666543 35555555666666666
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
++|.+. ..|..++.+++|+.|.+++|.+- .+|..++.+..|++|.+.+|.++-..|..
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 666665 55666667777777777777665 55666777777777777777776544443
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-16 Score=122.25 Aligned_cols=159 Identities=26% Similarity=0.336 Sum_probs=127.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccC-CcCC------------------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN-NQFV------------------ 62 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~------------------ 62 (207)
+...+.|..|.|+.+.+++|+.+++|+.|+|++|.|+.+-|++|.++.++..|-+-+ |+|+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 346688888999888888889999999999999998888888887776665554433 4322
Q ss_pred --------------------------------------------------------------------------------
Q 048618 63 -------------------------------------------------------------------------------- 62 (207)
Q Consensus 63 -------------------------------------------------------------------------------- 62 (207)
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence
Q ss_pred -----------------------------------Cccc-hhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 63 -----------------------------------QELP-KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 63 -----------------------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
...| .-|..+++|+.+++++|++++..+..|.+...++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 0111 1367788999999999999988889999999999999999
Q ss_pred CcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
|++......+|.++.+|++|++.+|++++..|.. .....+..+.+-+|++.|.+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 9998777788999999999999999999888876 44566777788899998874
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3e-18 Score=117.61 Aligned_cols=151 Identities=29% Similarity=0.440 Sum_probs=128.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|.|++|.++ ..|+.+..+.+|+.|++.+|++. ..|.++.++++|+.|++.-|.+. ..|..|+.++.|+.|+++
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 4677899999999 67778999999999999999998 78889999999999999999874 789999999999999999
Q ss_pred CCCCCC-chhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618 82 HNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 82 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~ 156 (207)
+|++.. ..|+.|..+..|+.|+|++|.+. .+|..++.+++|+.|.+++|.+-......+.+..+..+.+.+|..
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 999865 47788888899999999999998 677789999999999999998875544445566666666666653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=2.2e-15 Score=121.92 Aligned_cols=149 Identities=29% Similarity=0.409 Sum_probs=84.3
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
.|+.|||++|.++ +.|..+....++-.|+|++|+|..+...-|.+++.|-.||++.|.+.. +|....++..|++|.|+
T Consensus 104 dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcC
Confidence 3566667777666 666666666666666666666664444445566666666666666643 33334455555555555
Q ss_pred CCCCCC-------------------------chhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 82 HNFLGG-------------------------ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 82 ~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+|.+.. .+|..+..+.+|..+|++.|.+. ..|+++..+++|+.|++++|+++..
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee
Confidence 553311 23444444555566666666665 5666666666666666666666543
Q ss_pred CCCCcccCCCCcccccC
Q 048618 137 VPNSTAFRNAPVEALEG 153 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ 153 (207)
-.....+..+..+.++.
T Consensus 261 ~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSR 277 (1255)
T ss_pred eccHHHHhhhhhhcccc
Confidence 33333333333333333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=2e-15 Score=122.10 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=115.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCC-------------------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV------------------- 62 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~------------------- 62 (207)
++-.|+|++|.|..+..+.|.++..|-+|+|++|++. ..|+....+..||+|++++|.+.
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 5567888888888666667778888888888888886 55666677777777777777532
Q ss_pred ------CccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 63 ------QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 63 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
.-+|..+..+.+|..++++.|++. ..|+.+..+.+|+.|+|++|.++ .+......+.+|++|+++.|+++..
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc
Confidence 124556667778999999999997 78999999999999999999998 5566677788899999999998755
Q ss_pred CCCCcccCCCCcccccCCCCCCC
Q 048618 137 VPNSTAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~~~n~~~c~ 159 (207)
......+..+..+...+|...-.
T Consensus 284 P~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred hHHHhhhHHHHHHHhccCccccc
Confidence 44445555555555555544333
No 11
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=114.39 Aligned_cols=113 Identities=27% Similarity=0.432 Sum_probs=103.6
Q ss_pred CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618 26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105 (207)
Q Consensus 26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 105 (207)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCccccccCC-CCCCEEECCCCcCcccCC
Q 048618 106 HNNLSGSIPNCFEGM-HGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 106 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~ 138 (207)
+|.+++.+|..+... .++..+++.+|+..|..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999888764 467789999998776544
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=4.2e-14 Score=108.48 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=85.4
Q ss_pred hcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCC
Q 048618 45 LGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124 (207)
Q Consensus 45 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 124 (207)
|..+++|++|++++|+++.+-+.+|.++..+++|.|..|++.......|.++..|++|+|.+|+|+...|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 56678999999999999988889999999999999999999877778899999999999999999988899999999999
Q ss_pred EEECCCCcCcccCCC
Q 048618 125 VIDISDNQLQGPVPN 139 (207)
Q Consensus 125 ~l~l~~n~~~~~~~~ 139 (207)
++.+-.|++.|.+.-
T Consensus 350 ~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRL 364 (498)
T ss_pred eeehccCcccCccch
Confidence 999999999776644
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.46 E-value=7.9e-14 Score=98.18 Aligned_cols=112 Identities=29% Similarity=0.350 Sum_probs=38.1
Q ss_pred cCCCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCC
Q 048618 21 IGSFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL 99 (207)
Q Consensus 21 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 99 (207)
+.+...+++|+|++|.|+. +. .+. .+.+|+.|++++|.+... +.+..++.|++|++++|+++...+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4455667888888888874 32 343 467788888888887653 346677888888888888875433323457788
Q ss_pred CEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCccc
Q 048618 100 EKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 100 ~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+.|++++|.+.... -..+..+++|+.|++.+||++..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 88888888886532 24566778888888888888643
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.39 E-value=9.2e-13 Score=92.80 Aligned_cols=123 Identities=31% Similarity=0.364 Sum_probs=53.8
Q ss_pred CccEEECCCCCCcccCCcccC-CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++++|+|++|.|+.+ +.+. .+.+|+.|++++|.|... + .+..+++|+.|++++|.++...+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 468899999999954 3354 578999999999999854 3 5888999999999999998654433356899999999
Q ss_pred CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCc---cccccCCCCCCEEEC
Q 048618 81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSI---PNCFEGMHGLSVIDI 128 (207)
Q Consensus 81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~l~l 128 (207)
++|++... ....+..+++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999753 2356678999999999999998541 235678899997765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=6.4e-14 Score=117.24 Aligned_cols=129 Identities=31% Similarity=0.358 Sum_probs=77.0
Q ss_pred CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeC
Q 048618 25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL 104 (207)
Q Consensus 25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 104 (207)
+.|+.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 44555666666666665556666666666666666665444444566666666666666666 45566666666666666
Q ss_pred CCCcCCCCccccccCCCCCCEEECCCCcCcccC-CCCcccCCCCcccccCCCC
Q 048618 105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV-PNSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 105 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~~~~~n~~ 156 (207)
.+|.+. ..| .+..++.|+.+|++.|.++-.. +.....+.+..+++.||..
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 666665 344 4556666666666666665322 2222225566666666653
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.35 E-value=1.2e-13 Score=106.40 Aligned_cols=114 Identities=36% Similarity=0.568 Sum_probs=53.4
Q ss_pred CcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCC
Q 048618 18 PTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNME 97 (207)
Q Consensus 18 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 97 (207)
|..++.+++|..|+|++|.+. .+|..+..+..||.|+++.|.+. ..|+-...+..++.+-.++|++....++.+..+.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 333344444444444444443 33444444444444444444432 3343333333344444444444444444455555
Q ss_pred CCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618 98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 98 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
+|.+|||.+|.+. .+|..++.+.+|++|++.+|+|.
T Consensus 506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 5555555555554 44445555555555555555554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=2e-12 Score=100.42 Aligned_cols=133 Identities=28% Similarity=0.357 Sum_probs=65.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCC---CCEeeCcCCCCCC----CcchhhcCC-CCCCeeeccCCcCCCc----cchhh
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNN----SVPKSLGSL-LKLHYLSLSNNQFVQE----LPKEL 69 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~ 69 (207)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. .+..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 4555566655555444444433333 5666666555542 112223344 5556666666655421 22334
Q ss_pred hCCCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618 70 EKLVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 70 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
..+.+|++|++++|.+++.. +..+...++|+.|++++|.+++. +...+..+++|+.|++++|+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 44455666666666555321 12233344566666666655432 2233444555666666666554
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=2.5e-13 Score=104.72 Aligned_cols=151 Identities=34% Similarity=0.456 Sum_probs=126.5
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEe-eCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYL-DLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
++..+++.|++. ++|..+..+..+++. .+++|.++ .+|..++.+++|..|++++|-+ ..+|..++.+..|+.++++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheeccc
Confidence 456788888888 777777666666554 45555554 7888889999999999998876 4678888899999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
+|++. ..|.....+..++.+-.++|++....++-++.+.+|.+||+.+|.+....|..+.+.++..+.+.||++-
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99887 7888888888888888888999866677799999999999999999999998899999999999999864
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=2.9e-12 Score=99.55 Aligned_cols=154 Identities=29% Similarity=0.329 Sum_probs=95.0
Q ss_pred CccEEECCCCCCcc------cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCC---CCeeeccCCcCCC----ccchh
Q 048618 2 SLTKLILRGNQLTG------RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK---LHYLSLSNNQFVQ----ELPKE 68 (207)
Q Consensus 2 ~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~ 68 (207)
+++.++++++.+.+ .++..+..+++|+.|++++|.+....+..+..+.+ |+.|++++|++.. .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 46777777776652 23345566778888888887776555555555554 8888888877753 22334
Q ss_pred hhCC-CCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCC
Q 048618 69 LEKL-VQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 69 ~~~l-~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+..+ ++|+.+++++|.+++.. +..+..+.+|++|++++|.+++. ++..+...++|+.|++++|.+++....
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 4555 77788888888776432 23344556788888888877642 233344556788888888877532211
Q ss_pred -----CcccCCCCcccccCCC
Q 048618 140 -----STAFRNAPVEALEGNK 155 (207)
Q Consensus 140 -----~~~~~~~~~~~~~~n~ 155 (207)
....+.+..+++.+|.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc
Confidence 1234556666666554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=5.2e-13 Score=111.92 Aligned_cols=128 Identities=32% Similarity=0.358 Sum_probs=103.6
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
|+.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|+.|++++|++. .+|.....+..|++|...+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 567888899999888888889999999999999998666677888999999999999986 5668888888899999988
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
|.+. ..| .+..++.|+.+|++.|.++...-......++|+.||+++|..
T Consensus 440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 8887 556 778888999999999988753222223347899999999874
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=6.2e-11 Score=106.14 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCccccc
Q 048618 98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152 (207)
Q Consensus 98 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 152 (207)
+|+.|++++|.....+|..+..+++|+.|++++|..-..+|....+..+..+.+.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 4555555555544456666667777777777776543344433333344444443
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=1.4e-12 Score=97.45 Aligned_cols=132 Identities=30% Similarity=0.348 Sum_probs=107.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
.|+++||++|.|+ .+.++..-++.++.|++++|.|... +.++.+++|+.||+++|.++. +.+.-..+.++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 4788999999999 7888889999999999999999844 338889999999999998863 33444567889999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
.|.+.+ ...+..+.+|..||+++|+|.... ...++.+|-|+++.+.+|++.+...-
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 998853 345667888999999999997432 24678888899999999999765443
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.22 E-value=8.5e-12 Score=72.94 Aligned_cols=60 Identities=38% Similarity=0.543 Sum_probs=35.1
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 60 (207)
++|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666665555555666666666666666655555555566666666665554
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.19 E-value=9.4e-12 Score=72.77 Aligned_cols=61 Identities=41% Similarity=0.534 Sum_probs=43.1
Q ss_pred CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCC
Q 048618 25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFL 85 (207)
Q Consensus 25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 85 (207)
++|++|++++|++....+..|.++++|+.|++++|.+....++.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777765556677777777777777777666666777777777777777754
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=2.2e-10 Score=102.70 Aligned_cols=126 Identities=25% Similarity=0.304 Sum_probs=97.3
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... ++++|+.|++++|......|.. ..+++.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 57888888887777888888899999999998876555666555 6888999999887655555543 3578889999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
+|.+. ..|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99887 567788889999999998854333566667778888888888774
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=2.9e-10 Score=96.90 Aligned_cols=97 Identities=32% Similarity=0.484 Sum_probs=52.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.++ .+|..+. .+|++|++++|++. .+|..+. ..|+.|++++|++. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4566666666666 3444332 36666666666665 3444332 25666666666654 3343332 256666666
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLS 110 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 110 (207)
+|++. .+|..+. .+|+.|++++|.++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccc
Confidence 66665 2343332 35666666666655
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=2e-10 Score=97.83 Aligned_cols=140 Identities=25% Similarity=0.369 Sum_probs=85.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|++.. +|..+. .+|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence 6788888888887 4565443 46888888888877 5555553 367788888777763 444332 367777777
Q ss_pred CCCCCCchhHHhh-------------------cCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcc
Q 048618 82 HNFLGGELLSQIC-------------------NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTA 142 (207)
Q Consensus 82 ~n~l~~~~~~~~~-------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 142 (207)
+|+++.. |..+. ..++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|.. .
T Consensus 292 ~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~-l 365 (754)
T PRK15370 292 DNSIRTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPET-L 365 (754)
T ss_pred CCccccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChh-h
Confidence 7777632 22111 11356666666666653 343332 577888888887763 3322 1
Q ss_pred cCCCCcccccCCCC
Q 048618 143 FRNAPVEALEGNKE 156 (207)
Q Consensus 143 ~~~~~~~~~~~n~~ 156 (207)
...+..+++.+|..
T Consensus 366 p~~L~~LdLs~N~L 379 (754)
T PRK15370 366 PPTITTLDVSRNAL 379 (754)
T ss_pred cCCcCEEECCCCcC
Confidence 24566666666643
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=1.8e-10 Score=98.00 Aligned_cols=128 Identities=26% Similarity=0.327 Sum_probs=71.2
Q ss_pred CccEEECCCCCCccc--CCcccCC--------------CCCCCEeeCcCCCCCCCcchhhcC-----------------C
Q 048618 2 SLTKLILRGNQLTGR--LPTEIGS--------------FKELEYLDLSANRFNNSVPKSLGS-----------------L 48 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~--~~~~~~~--------------l~~L~~L~L~~n~i~~~~~~~~~~-----------------l 48 (207)
+|+.|++++|.+++. .|..+.. ..+|+.|++++|++.+ +|....+ .
T Consensus 303 ~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~ 381 (788)
T PRK15387 303 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP 381 (788)
T ss_pred ccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccc
Confidence 566777777766642 1111111 1367778888887774 3321111 1
Q ss_pred CCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEEC
Q 048618 49 LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI 128 (207)
Q Consensus 49 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l 128 (207)
.+|+.|++++|.+.. +|.. ..+|+.|++++|.++. +|.. ..+|+.|++++|.++ .+|+.+..+++|+.+++
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 235555555555543 2221 2346666666666653 3332 234566777777776 55666777777778888
Q ss_pred CCCcCcccCCC
Q 048618 129 SDNQLQGPVPN 139 (207)
Q Consensus 129 ~~n~~~~~~~~ 139 (207)
++|++++..+.
T Consensus 453 s~N~Ls~~~~~ 463 (788)
T PRK15387 453 EGNPLSERTLQ 463 (788)
T ss_pred CCCCCCchHHH
Confidence 88877765443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=6.3e-12 Score=100.74 Aligned_cols=108 Identities=33% Similarity=0.585 Sum_probs=70.1
Q ss_pred CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
|+.|.+++|++. .+|..++.+.+|..||.++|++. .+|..+..+.+|+.|++..|.+. ..|..+..+ .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 344444444443 33444444455555555666553 34445555666666666666665 445556654 478899999
Q ss_pred CcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
|+++ .+|-+|..+..|+.|.|.+|+++.....
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 9998 7788999999999999999999855443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.03 E-value=8.1e-10 Score=94.03 Aligned_cols=142 Identities=32% Similarity=0.333 Sum_probs=77.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcch---hhc-------------CC-CCCCeeeccCCcCCCc
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK---SLG-------------SL-LKLHYLSLSNNQFVQE 64 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~-------------~l-~~L~~L~l~~n~l~~~ 64 (207)
+|+.|++++|.++ .+|.. .++|+.|++++|++.+. |. .+. .+ .+|+.|++++|++..
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS- 356 (788)
T ss_pred hcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCCcccccccccccCccccccccccccceEecCCCccCC-
Confidence 5678889999888 45542 47899999999998853 22 111 11 268888888888865
Q ss_pred cchhhhCCCCCCEEecCCCCCCCchhHHhh-----------------cCCCCCEEeCCCCcCCCCccccccCCCCCCEEE
Q 048618 65 LPKELEKLVQLSELDLSHNFLGGELLSQIC-----------------NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127 (207)
Q Consensus 65 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~ 127 (207)
+|... .+|+.|++++|.+.. +|.... ...+|+.|++++|.+++ +|.. ..+|+.|+
T Consensus 357 LP~lp---~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~ 428 (788)
T PRK15387 357 LPTLP---SELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPML---PSGLLSLS 428 (788)
T ss_pred CCCCC---cccceehhhcccccc-CcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence 33221 234444444444442 222110 11344445555554442 2321 12345556
Q ss_pred CCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 128 ISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 128 l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
+++|+++........+..+..+++.+|+..
T Consensus 429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 429 VYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hccCcccccChHHhhccCCCeEECCCCCCC
Confidence 666665532222244566667777777654
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=3.2e-11 Score=96.77 Aligned_cols=124 Identities=36% Similarity=0.480 Sum_probs=84.8
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
|+.|.+++|+++ .+|..++.+.+|..|+.+.|.+. ..|..++++.+|+.|.++.|++.. +|+.+..| .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeeccc
Confidence 567777777777 67777777788888888888776 566677778888888888887754 44444454 477788888
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccc--ccCCCC-CCEEECCCCc
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC--FEGMHG-LSVIDISDNQ 132 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~-L~~l~l~~n~ 132 (207)
|++. .+|-.|..|..|+.|-|.+|.+. ..|.. .++..+ .++|+...++
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8887 66777788888888888888887 33332 222222 3556665554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.8e-10 Score=89.80 Aligned_cols=146 Identities=37% Similarity=0.550 Sum_probs=70.8
Q ss_pred ccEEECCCCCCcccCCcccCCCC-CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+..++.|+.|++++|++.. .|.....++.|+.++++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheecc
Confidence 455555555555 3333344442 5555555555554 333344555555555555555542 22222244445555555
Q ss_pred CCCCCCchhH-----------------------HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618 82 HNFLGGELLS-----------------------QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 82 ~n~l~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
+|++. .+|. .+..+..+..+.+.+|.+. ..+..+..+++++.+++++|.++....
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence 55544 2222 2233333333333344333 124455556667777777777764443
Q ss_pred CCcccCCCCcccccCC
Q 048618 139 NSTAFRNAPVEALEGN 154 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~n 154 (207)
......+..+++.++
T Consensus 273 -~~~~~~l~~L~~s~n 287 (394)
T COG4886 273 -LGSLTNLRELDLSGN 287 (394)
T ss_pred -ccccCccCEEeccCc
Confidence 444455555555554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=2.4e-10 Score=85.62 Aligned_cols=107 Identities=32% Similarity=0.392 Sum_probs=89.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+.++.|++++|.|+.. +.+..+++|+.|||++|.++ .+..+--.+.++++|.++.|.+.. -+.+..+.+|..|++
T Consensus 307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDL 381 (490)
T ss_pred cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccc
Confidence 4689999999999944 33889999999999999998 566676778899999999999854 255778899999999
Q ss_pred CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCC
Q 048618 81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGS 112 (207)
Q Consensus 81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 112 (207)
++|++... ....++.++.|+++.|.+|.+.+.
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99999743 235678899999999999999854
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.4e-09 Score=85.82 Aligned_cols=125 Identities=34% Similarity=0.490 Sum_probs=97.4
Q ss_pred EEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 5 KLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 5 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
.+.+..+.+. .....+..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. ..|.....++.|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4677777774 23344566789999999999998 5565666664 9999999999986 45567789999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
+++ ..+......+.|+.|++++|.++ .+|........|+.+.+++|++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce
Confidence 998 45555557889999999999998 55655555566888888888543
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=5.3e-11 Score=98.13 Aligned_cols=128 Identities=30% Similarity=0.322 Sum_probs=100.0
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchh-hhCCCCCCEEecC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLSELDLS 81 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~ 81 (207)
|...+.++|.+. ....++.-++.++.|+|+.|++... +.+..+++|++||+++|.+.. +|.. ..++ .|+.|+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence 556778888887 7778888999999999999999743 378899999999999999864 4433 2333 49999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPV 137 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~ 137 (207)
+|.++. ...+.++.+|+.||+++|.+.+... ..+..+..|+.|.+.||++.|-.
T Consensus 241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 998874 2456788999999999999875422 33455677899999999997653
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.9e-09 Score=83.24 Aligned_cols=112 Identities=24% Similarity=0.263 Sum_probs=63.8
Q ss_pred CCCCCEeeCcCCCCCCCcch-hhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCch-hHHhhcCCCCCE
Q 048618 24 FKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEK 101 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 101 (207)
+++|+.|.++.|.++...-. ....+|+|+.|++.+|...........-++.|++|+|++|.+.+.. ....+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 45555555555555432111 1234556666666666422222222334556777888888776432 134556777888
Q ss_pred EeCCCCcCCCC-cccc-----ccCCCCCCEEECCCCcCcc
Q 048618 102 LNLSHNNLSGS-IPNC-----FEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 102 L~l~~n~l~~~-~~~~-----~~~~~~L~~l~l~~n~~~~ 135 (207)
|+++.+.+++. .|++ ....++|+.|++..|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 88887777653 3333 3456788888888888753
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.9e-09 Score=81.97 Aligned_cols=150 Identities=22% Similarity=0.167 Sum_probs=94.6
Q ss_pred CccEEECCCCCCcccCC--cccCCCCCCCEeeCcCCCCCCCc--chhhcCCCCCCeeeccCCcCCCccchh-hhCCCCCC
Q 048618 2 SLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRFNNSV--PKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLS 76 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 76 (207)
+|+...|.++.+. ..+ +....|++++.|+|+.|-+.... -.....+++|+.|+++.|.+.....+. -..+..++
T Consensus 122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 5677788888776 223 46678888889998888766321 122356888888888888875322222 12456788
Q ss_pred EEecCCCCCCCchhH-HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC--CCCcccCCCCccccc
Q 048618 77 ELDLSHNFLGGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV--PNSTAFRNAPVEALE 152 (207)
Q Consensus 77 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~~~~~~ 152 (207)
.|.++.|.+++.... ....+++|+.|+|.+|..-.........++.|+.||+++|++-... +....++.+..+.+.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 888888888764433 3446788888888887532233333445567788888888775443 222444554444443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=1.8e-08 Score=76.74 Aligned_cols=132 Identities=28% Similarity=0.389 Sum_probs=81.2
Q ss_pred CccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhh
Q 048618 2 SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKEL 69 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~ 69 (207)
.|+.++..+|++... ....|+..++|+.+.+.+|.|... ....|...++|+.|||+.|-++.. +...+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 566777777776633 223455667777777777766532 233456677777777777766543 33445
Q ss_pred hCCCCCCEEecCCCCCCCchhHHhh-----cCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcC
Q 048618 70 EKLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 70 ~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~ 133 (207)
..+++|+.+++++|.+.......+. ..++|+.+.+.+|.++.. +..++...+.|..|++++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5566777777777776554333322 356777777777777632 334455566777777777776
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.57 E-value=2.2e-09 Score=71.54 Aligned_cols=104 Identities=28% Similarity=0.469 Sum_probs=61.3
Q ss_pred CCEeeCcCCCCCCCcchh---hcCCCCCCeeeccCCcCCCccchhhh-CCCCCCEEecCCCCCCCchhHHhhcCCCCCEE
Q 048618 27 LEYLDLSANRFNNSVPKS---LGSLLKLHYLSLSNNQFVQELPKELE-KLVQLSELDLSHNFLGGELLSQICNMESLEKL 102 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 102 (207)
+-.++|++|.+. -+++. +.....|...++++|.+. ..|..|. ..+.++.+++++|++. ..|..+..|+.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345566666554 23333 233445555677777664 3344443 3446677777777776 455567777777777
Q ss_pred eCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618 103 NLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 103 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
+++.|.+. ..|..+..+.++..|+..+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 77777776 44555555666666666666554
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.54 E-value=2.1e-07 Score=66.05 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=75.6
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.++|++..+..+.- -=........+||++|.+.. . ..|..+++|++|.+.+|.|+.+-|..-..+++|+.|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 346666666552211 11223455667777777652 2 34667777777777777777666666556677777777777
Q ss_pred CCCCch-hHHhhcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEECCC
Q 048618 84 FLGGEL-LSQICNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDISD 130 (207)
Q Consensus 84 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~ 130 (207)
.+.... .+-+..+++|+.|.+-+|.++.. -.-.+..+++|+.||.+.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 765321 12344567777777777777632 123455677777777654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=1.2e-09 Score=90.42 Aligned_cols=127 Identities=31% Similarity=0.321 Sum_probs=92.5
Q ss_pred CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
|.+.+.++|.+. ....++.-++.++.|+|+.|++... +.+..++.|++|||++|.+. ..|..-..-+.|..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 344455556655 5566677778889999999988654 37788899999999999886 4454433446689999999
Q ss_pred CcCCCCccccccCCCCCCEEECCCCcCcccCC--CCcccCCCCcccccCCCCCCC
Q 048618 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP--NSTAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~~~~~~~n~~~c~ 159 (207)
|.++.. .-+.++.+|+.||+++|-+.+... ..+.+..+..+.++||+.-|.
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 988743 225677889999999998875433 236667778888899997775
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.53 E-value=8.9e-08 Score=73.06 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=72.5
Q ss_pred CccEEECCCCCCcccCCcc----cCCCCCCCEeeCcCCCCCCCcchh-------------hcCCCCCCeeeccCCcCCCc
Q 048618 2 SLTKLILRGNQLTGRLPTE----IGSFKELEYLDLSANRFNNSVPKS-------------LGSLLKLHYLSLSNNQFVQE 64 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~ 64 (207)
.|+.|+|++|-+....++. +.++..|+.|.|.+|.+...-... .++-+.|+++...+|.+...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6788999999887554443 366788888888888876322211 12334566666666655422
Q ss_pred ----cchhhhCCCCCCEEecCCCCCCCc----hhHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCc
Q 048618 65 ----LPKELEKLVQLSELDLSHNFLGGE----LLSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 65 ----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~ 132 (207)
....|+..+.|+.+.++.|.+... ....+..++.|+.|||++|-++.. +...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 223344455555555555554321 122344455555555555555422 23344445555555555554
Q ss_pred C
Q 048618 133 L 133 (207)
Q Consensus 133 ~ 133 (207)
+
T Consensus 253 l 253 (382)
T KOG1909|consen 253 L 253 (382)
T ss_pred c
Confidence 4
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=1.1e-07 Score=82.64 Aligned_cols=103 Identities=31% Similarity=0.379 Sum_probs=53.0
Q ss_pred ccEEECCCCC--CcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 3 LTKLILRGNQ--LTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 3 L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
|+.|-+.+|. +....++.|..++.|+.|||++|.-.+..|..++.+-+|++|+++++.+. .+|..+.++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 4445555553 33233333455555555555555444455555555555555555555553 45555555555555555
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
.++.-....+.....+.+|++|.+..
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccchhhhcccccEEEeec
Confidence 55543333344444455555555543
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=1.6e-08 Score=67.51 Aligned_cols=132 Identities=24% Similarity=0.277 Sum_probs=93.1
Q ss_pred ccEEECCCCCCcccCCccc---CCCCCCCEeeCcCCCCCCCcchhh-cCCCCCCeeeccCCcCCCccchhhhCCCCCCEE
Q 048618 3 LTKLILRGNQLTGRLPTEI---GSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSNNQFVQELPKELEKLVQLSEL 78 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 78 (207)
+..++|+.|.+. -++++. .....|+..+|++|.+. ..|..| ..++.+++|+|..|.+. .+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 456788888776 344443 44566677789999987 445555 44568899999999986 567779999999999
Q ss_pred ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+++.|.+. ..|..+..+.++..|+..+|.+....-+.+ .-...-..++.++++.+.++.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccccCcc
Confidence 99999997 667777778889999999998874433422 222223345577777665553
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=2.7e-08 Score=80.27 Aligned_cols=125 Identities=30% Similarity=0.339 Sum_probs=65.1
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++.+|.|..+ ...+..+++|++|++++|.|+... .+..++.|+.|++.+|.+... ..+..++.|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 455666666666632 222455666666666666665432 244455566666666665432 233345566666666
Q ss_pred CCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618 82 HNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 82 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
+|.+....+ . ...+..++.+++.+|.+... +.+.....+..+++..|.++
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 666654333 1 34556666666666665422 12222233333355555554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-07 Score=80.45 Aligned_cols=127 Identities=27% Similarity=0.329 Sum_probs=101.4
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC--CCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR--FNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
.+...+-+|.+. .++.+. ..+.|++|.+..|. +.......|..++.|..||+++|.-.+.+|..++.+-+|++|++
T Consensus 525 ~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 525 VRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred eeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 345555666665 344433 34589999999986 55455555888999999999998877889999999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
++..+. ..|..+..+..|.+|++..+.-....+.....+++|+.|.+....
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999998 789999999999999999887655567777778999999887654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=4.7e-08 Score=78.91 Aligned_cols=125 Identities=30% Similarity=0.426 Sum_probs=74.2
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
++.+.+..|.+.. .-..+..+.++..|++.+|.|. .+...+..+++|+.|++++|.|+... .+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 3445556666553 2334566677777777777776 33333556677777777777775542 234455577777777
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCc
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~ 134 (207)
|.+... ..+..+..|+.+++++|.++...+ . ...+.+++.+++.+|.+.
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 776532 233446667777777777764433 1 355566666777776654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=3e-07 Score=49.54 Aligned_cols=37 Identities=41% Similarity=0.604 Sum_probs=20.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCC
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN 38 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 38 (207)
++|++|++++|.|+ .+|+.+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 34444566666666666666655
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.30 E-value=1.2e-06 Score=62.24 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEe
Q 048618 24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLN 103 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 103 (207)
...-+.++|++.++.. +..--.-+.+...+|+++|.+.. .+.|..+++|.+|.+++|+++...|..-.-+++|+.|.
T Consensus 18 ~~~e~e~~LR~lkip~-ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 18 SVRERELDLRGLKIPV-IENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred hccccccccccccccc-hhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 3346678888887763 22211234567899999999854 35677889999999999999987776666678899999
Q ss_pred CCCCcCCCCc-cccccCCCCCCEEECCCCcCcc
Q 048618 104 LSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 104 l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
|.+|.+.... -+-+..+++|+.|.+-+|+++.
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 9999997432 3457788999999999999864
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.6e-06 Score=46.76 Aligned_cols=36 Identities=44% Similarity=0.607 Sum_probs=17.1
Q ss_pred CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCC
Q 048618 26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62 (207)
Q Consensus 26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 62 (207)
+|++|++++|+|+ .+|..+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=2.3e-06 Score=72.85 Aligned_cols=132 Identities=19% Similarity=0.246 Sum_probs=94.3
Q ss_pred CccEEECCCCCCcccCC--cccCCCCCCCEeeCcCCCCCCC-cchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEE
Q 048618 2 SLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRFNNS-VPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSEL 78 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 78 (207)
+|+.|+++|...-..-+ ..-.-+|.|+.|.+.+-.+... .-.-..++++|..||++++++... ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 67888888865432211 1224579999999988766432 223356789999999999998755 677889999999
Q ss_pred ecCCCCCCC-chhHHhhcCCCCCEEeCCCCcCCCC------ccccccCCCCCCEEECCCCcCcc
Q 048618 79 DLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGS------IPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 79 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
.+.+=.+.. ..-..+..+++|+.||++....... .-++-..+|+|+.||.++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888776653 3344667899999999988655422 23455568999999999887754
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.8e-06 Score=65.11 Aligned_cols=61 Identities=28% Similarity=0.282 Sum_probs=34.8
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCc-chhhcCCCCCCeeeccCCcCC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSV-PKSLGSLLKLHYLSLSNNQFV 62 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~ 62 (207)
+|+.|.+.|+++.+.+...+.+-.+|+.|+++.++ ++..- .--+.+++.|+.|++++|.+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 35566666666666555666666667777766653 22111 112455666667777666543
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=5.1e-07 Score=67.32 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=54.5
Q ss_pred CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCch-hHHhhcCCCCCEE
Q 048618 24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEKL 102 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 102 (207)
+.+.+.|+..+|.+.++ .....++.|+.|.|+-|+++.. +.+..+++|++|+|..|.|.+.. ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44555666666665532 1234566666666666666443 33556666666666666665422 1334466666666
Q ss_pred eCCCCcCCCCcc-----ccccCCCCCCEEE
Q 048618 103 NLSHNNLSGSIP-----NCFEGMHGLSVID 127 (207)
Q Consensus 103 ~l~~n~l~~~~~-----~~~~~~~~L~~l~ 127 (207)
+|..|.-.+.-+ ..+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666554322 2344555555543
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.96 E-value=3.2e-06 Score=62.34 Aligned_cols=109 Identities=28% Similarity=0.295 Sum_probs=76.9
Q ss_pred cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC--cCCCccchhhhCCCCCCEEecCCCCCCCchhHHh
Q 048618 16 RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN--QFVQELPKELEKLVQLSELDLSHNFLGGELLSQI 93 (207)
Q Consensus 16 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 93 (207)
.+......+..|+.|.+.+..++.. ..|..+++|+.|.++.| .+.+.++-....+++|++++++.|++.. +..+
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 3555666778888888888877632 35778889999999999 4444444445567999999999999863 3333
Q ss_pred ---hcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEEC
Q 048618 94 ---CNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDI 128 (207)
Q Consensus 94 ---~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l 128 (207)
..+.+|..|++.+|..+.. -...+.-+++|+.+|-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 4567788899998887753 1234556677776654
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=2.7e-05 Score=52.18 Aligned_cols=106 Identities=13% Similarity=0.196 Sum_probs=44.1
Q ss_pred cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCC
Q 048618 19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES 98 (207)
Q Consensus 19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 98 (207)
.+|.++.+|+.+.+.. .+.......|.+.++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|....+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555666666553 343344445555556666665543 4434444455555566666644 333233344455556
Q ss_pred CCEEeCCCCcCCCCccccccCCCCCCEEECC
Q 048618 99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129 (207)
Q Consensus 99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~ 129 (207)
++.+.+..+ +.......+... .++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666666543 332333444444 55555554
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=1.4e-06 Score=64.98 Aligned_cols=98 Identities=27% Similarity=0.222 Sum_probs=78.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc-hhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP-KELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l 80 (207)
++++|+..|+.+.++ ....+|+.|+.|.|+-|+|+..- .|..+++|+.|+|+.|.|...-. .-+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 467889999998865 44578999999999999998653 47788999999999999975422 22678999999999
Q ss_pred CCCCCCCchhH-----HhhcCCCCCEEe
Q 048618 81 SHNFLGGELLS-----QICNMESLEKLN 103 (207)
Q Consensus 81 ~~n~l~~~~~~-----~~~~l~~L~~L~ 103 (207)
..|...+..+. .+..+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998776543 355688999886
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.0002 Score=57.17 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=44.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.++ .+|. + ..+|++|.+++|.-....|..+. .+|+.|++++|.-...+|. +|+.|++.
T Consensus 53 ~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeC
Confidence 5778999999877 4552 2 24688899888654445665553 4788888888732223332 35556665
Q ss_pred CCC
Q 048618 82 HNF 84 (207)
Q Consensus 82 ~n~ 84 (207)
.+.
T Consensus 121 ~n~ 123 (426)
T PRK15386 121 GSA 123 (426)
T ss_pred CCC
Confidence 554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=8.3e-06 Score=61.60 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=52.3
Q ss_pred CccEEECCCCCCcc--cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch-hhhCCCCCCEE
Q 048618 2 SLTKLILRGNQLTG--RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK-ELEKLVQLSEL 78 (207)
Q Consensus 2 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 78 (207)
.++.|||.+|.|+. ++...+.+++.|++|+++.|++...+..-=..+.+|+.|-+.+..+.-...+ .+..+|.++++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 35678888888773 4556667888888888888887754432113455677777766665433322 23456666666
Q ss_pred ecCCC
Q 048618 79 DLSHN 83 (207)
Q Consensus 79 ~l~~n 83 (207)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 66666
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.1e-06 Score=66.28 Aligned_cols=131 Identities=26% Similarity=0.280 Sum_probs=85.0
Q ss_pred CccEEECCCCCCccc-CCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEE
Q 048618 2 SLTKLILRGNQLTGR-LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSEL 78 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L 78 (207)
.|+.+||+.-.|+.. .-..+..+.+|+.|.+.++.+.+.+...++.-..|..|+++.++-... ..-.+.++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477889998888732 234457789999999999999988888899999999999998752222 22336788999999
Q ss_pred ecCCCCCCCchhHHh-hc-CCCCCEEeCCCCcCC---CCccccccCCCCCCEEECCCCc
Q 048618 79 DLSHNFLGGELLSQI-CN-MESLEKLNLSHNNLS---GSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 79 ~l~~n~l~~~~~~~~-~~-l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
+++++.+........ .+ -.+|+.|+++|..-. +.+....+.++.+.+||+++|-
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 999997654322111 11 245555555553211 1112223345555556665553
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=3e-05 Score=66.20 Aligned_cols=125 Identities=24% Similarity=0.303 Sum_probs=89.7
Q ss_pred CCccEEECCCCCCcc-cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618 1 NSLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL 78 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 78 (207)
|+|+.|.+.+-.+.. ..-....++++|..||+++.+++.. ..+.++++||.|.|++=.+.. ..-..+.+|++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 578899999877652 3345567899999999999999855 568899999999998877654 223456689999999
Q ss_pred ecCCCCCCCch--h----HHhhcCCCCCEEeCCCCcCCCCcccc-ccCCCCCCEEE
Q 048618 79 DLSHNFLGGEL--L----SQICNMESLEKLNLSHNNLSGSIPNC-FEGMHGLSVID 127 (207)
Q Consensus 79 ~l~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~l~ 127 (207)
|+|..+..... . +....++.|+.||.+++.+....-+. +..-++|+.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 99998765322 1 12235899999999999887644333 23344454433
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1.2e-05 Score=60.74 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=54.6
Q ss_pred CCCEeeCcCCCCCCCcch-hhc-CCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618 26 ELEYLDLSANRFNNSVPK-SLG-SLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101 (207)
Q Consensus 26 ~L~~L~L~~n~i~~~~~~-~~~-~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 101 (207)
.++.+.+.++.|..+... .|+ ..+.++.+|+.+|.++.. +...+.++|.|+.|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 334445555554422211 122 234566677777776543 3334566777777777777665432211124456666
Q ss_pred EeCCCCcCCC-CccccccCCCCCCEEECCCC
Q 048618 102 LNLSHNNLSG-SIPNCFEGMHGLSVIDISDN 131 (207)
Q Consensus 102 L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n 131 (207)
|-|.+..+.- .....+..+|.+++|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6666655431 12233445556666666665
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.0002 Score=47.93 Aligned_cols=117 Identities=14% Similarity=0.228 Sum_probs=63.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.+.+.. .+..+...+|.++.+|+.+.+..+ +.......|.+..+++.+.+.. .+.......|..+++++.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 577777775 566677778888888999998775 6656667788887888888865 4444555667778889999987
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 124 (207)
.+ +.......+... .++.+.+.. .++.....+|.++++|+
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 65 544555566665 888888776 44435566777766653
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.49 E-value=0.00029 Score=52.88 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=65.2
Q ss_pred CCccEEECCCCCCcccCCcc----cCCCCCCCEeeCcCCCCCCCcchhh-------------cCCCCCCeeeccCCcCCC
Q 048618 1 NSLTKLILRGNQLTGRLPTE----IGSFKELEYLDLSANRFNNSVPKSL-------------GSLLKLHYLSLSNNQFVQ 63 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~-------------~~l~~L~~L~l~~n~l~~ 63 (207)
+.|+..+|++|.+....|+. +.+-..|..|.+++|.+...-...+ .+-|.|+......|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 35677777887777555543 3556777777777776642211111 233556666666665532
Q ss_pred ccc----hhhhCCCCCCEEecCCCCCCCchhH-----HhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCC
Q 048618 64 ELP----KELEKLVQLSELDLSHNFLGGELLS-----QICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISD 130 (207)
Q Consensus 64 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~ 130 (207)
-.. ..+..-..|+++.+..|.+...... .+..+.+|+.|++..|-++-. +...+..|+.|+.|.+..
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 111 1122223455555555544322111 112234555555555555421 223344455555555555
Q ss_pred CcC
Q 048618 131 NQL 133 (207)
Q Consensus 131 n~~ 133 (207)
|-+
T Consensus 252 Cll 254 (388)
T COG5238 252 CLL 254 (388)
T ss_pred hhh
Confidence 544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=0.00013 Score=53.98 Aligned_cols=100 Identities=25% Similarity=0.209 Sum_probs=67.4
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCC--CCCCCcchhhcCCCCCCeeeccCCcCCCc-cchhhhCCCCCCEEe
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN--RFNNSVPKSLGSLLKLHYLSLSNNQFVQE-LPKELEKLVQLSELD 79 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 79 (207)
|+.|++.+..++.. ..+..+++|+.|.++.| .+.+..+......++|++|++++|++.-. .-.....+.+|..|+
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 45556666666522 34667899999999999 56555554455669999999999998521 112245677888999
Q ss_pred cCCCCCCCc---hhHHhhcCCCCCEEeC
Q 048618 80 LSHNFLGGE---LLSQICNMESLEKLNL 104 (207)
Q Consensus 80 l~~n~l~~~---~~~~~~~l~~L~~L~l 104 (207)
+.+|..+.. --..|.-+++|+.|+-
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccc
Confidence 999876542 2234555677777753
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.89 E-value=0.0049 Score=49.44 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=64.4
Q ss_pred CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC-CCCCchhHHhhcCCCCC
Q 048618 22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN-FLGGELLSQICNMESLE 100 (207)
Q Consensus 22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 100 (207)
..+.+++.|++++|.+. ..| .+. .+|+.|.++++.-...+|+.+. .+|+.|++++| .+. .+|. .|+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence 45789999999999887 445 222 3699999988655456666543 47999999998 454 4443 466
Q ss_pred EEeCCCCcCC--CCccccccCC------------------CCCCEEECCCCcCc
Q 048618 101 KLNLSHNNLS--GSIPNCFEGM------------------HGLSVIDISDNQLQ 134 (207)
Q Consensus 101 ~L~l~~n~l~--~~~~~~~~~~------------------~~L~~l~l~~n~~~ 134 (207)
.|++..+... ..+|..+..+ ++|+.|++++|...
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 6666655432 1233322221 36788888877654
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.00073 Score=30.37 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=11.8
Q ss_pred CccEEECCCCCCcccCCcccCC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGS 23 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~ 23 (207)
+|++|++++|.++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 44444443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.0088 Score=45.18 Aligned_cols=84 Identities=26% Similarity=0.350 Sum_probs=41.5
Q ss_pred CccEEECCCCCCcccCCc----ccCCCCCCCEeeCcCCCCC---CCcch-------hhcCCCCCCeeeccCCcCCCccch
Q 048618 2 SLTKLILRGNQLTGRLPT----EIGSFKELEYLDLSANRFN---NSVPK-------SLGSLLKLHYLSLSNNQFVQELPK 67 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~---~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~ 67 (207)
.+..++|+||.|..+-.. .+.+-.+|+..+++.-... ..++. .+..+++|+..+++.|-+....|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 467788888888754332 2333455555554443221 11111 233455566666666655444333
Q ss_pred hh----hCCCCCCEEecCCCCC
Q 048618 68 EL----EKLVQLSELDLSHNFL 85 (207)
Q Consensus 68 ~~----~~l~~L~~L~l~~n~l 85 (207)
.+ +.-+.|.+|.+++|.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCC
Confidence 32 3334555555555544
No 68
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.11 E-value=0.0051 Score=31.81 Aligned_cols=27 Identities=26% Similarity=0.312 Sum_probs=16.2
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
..+++++++++++++.+++.+|++|+|
T Consensus 14 a~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEEEechHHHHHHHHHHhheEEeccC
Confidence 566667666666666555554555543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0027 Score=28.47 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=3.8
Q ss_pred CeeeccCCcC
Q 048618 52 HYLSLSNNQF 61 (207)
Q Consensus 52 ~~L~l~~n~l 61 (207)
+.|++++|++
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.04 E-value=0.014 Score=24.26 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=5.6
Q ss_pred CccEEECCCCCCc
Q 048618 2 SLTKLILRGNQLT 14 (207)
Q Consensus 2 ~L~~L~l~~n~i~ 14 (207)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=94.96 E-value=0.02 Score=37.80 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=18.4
Q ss_pred eeEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 180 KWFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
...+|++++++.++.+++++.|+++|||
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777777666666666666666654
No 72
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=94.89 E-value=0.035 Score=35.21 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=14.3
Q ss_pred eeEeehHHHHHHHHHHHHHH-HHhhhhcC
Q 048618 180 KWFAIVFPVLGAVFVSMALI-AIFILRKR 207 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~~~rr 207 (207)
...+|++++++++.+++.++ .||++|||
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 36666665555554444444 34444554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.88 E-value=0.027 Score=46.17 Aligned_cols=60 Identities=28% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCCCCEEecCCCC-CCCchhHHhhc-CCCCCEEeCCCCc-CCCC-ccccccCCCCCCEEECCCC
Q 048618 72 LVQLSELDLSHNF-LGGELLSQICN-MESLEKLNLSHNN-LSGS-IPNCFEGMHGLSVIDISDN 131 (207)
Q Consensus 72 l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~l~l~~n 131 (207)
+.+|+.++++++. +++..-..+.. .++|+.|.+.++. ++.. +......++.|++|+++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3444455554444 33332222222 3445555444443 3322 1222233444555555444
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.0062 Score=43.79 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=55.6
Q ss_pred CCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCC-chhHHhh-cCCCCCEEeCCCCc-CCCCccccccCCCCCCEE
Q 048618 50 KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQIC-NMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVI 126 (207)
Q Consensus 50 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l 126 (207)
.++.+|-++..+....-+.+.++++++.|.+.+++--+ ...+.++ ..++|+.|++++|. ||..--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46677777777776666677777888888877775322 2222222 35788888888774 776666777778888877
Q ss_pred ECCCCc
Q 048618 127 DISDNQ 132 (207)
Q Consensus 127 ~l~~n~ 132 (207)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776544
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.22 E-value=0.05 Score=25.22 Aligned_cols=11 Identities=64% Similarity=0.754 Sum_probs=4.3
Q ss_pred CCeeeccCCcC
Q 048618 51 LHYLSLSNNQF 61 (207)
Q Consensus 51 L~~L~l~~n~l 61 (207)
|+.|++.+|.+
T Consensus 4 L~~L~L~~N~l 14 (26)
T smart00370 4 LRELDLSNNQL 14 (26)
T ss_pred CCEEECCCCcC
Confidence 33333333333
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.22 E-value=0.05 Score=25.22 Aligned_cols=11 Identities=64% Similarity=0.754 Sum_probs=4.3
Q ss_pred CCeeeccCCcC
Q 048618 51 LHYLSLSNNQF 61 (207)
Q Consensus 51 L~~L~l~~n~l 61 (207)
|+.|++.+|.+
T Consensus 4 L~~L~L~~N~l 14 (26)
T smart00369 4 LRELDLSNNQL 14 (26)
T ss_pred CCEEECCCCcC
Confidence 33333333333
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.12 E-value=0.00089 Score=54.99 Aligned_cols=113 Identities=28% Similarity=0.350 Sum_probs=52.5
Q ss_pred CCCCCCCEeeCcCCCCCC----Ccchhhc----CCCCCCeeeccCCcCCCc----cchhhhCCCC-CCEEecCCCCCCCc
Q 048618 22 GSFKELEYLDLSANRFNN----SVPKSLG----SLLKLHYLSLSNNQFVQE----LPKELEKLVQ-LSELDLSHNFLGGE 88 (207)
Q Consensus 22 ~~l~~L~~L~L~~n~i~~----~~~~~~~----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~l~~n~l~~~ 88 (207)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++.. ....+...++ +..+++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 334555555555555421 1111222 244555566655555421 1112222333 44466666655432
Q ss_pred hh----HHhhcC-CCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618 89 LL----SQICNM-ESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 89 ~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
.. ..+..+ +.++.+++..|.++.. ..+++..++.++.+.+..|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11 122223 4556666666666543 2334445556666666666653
No 78
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=94.08 E-value=0.043 Score=41.35 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=18.4
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
.-+|.+.|+.++.|+++++.+|+||||
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555666666777788888887
No 79
>PTZ00370 STEVOR; Provisional
Probab=94.02 E-value=0.045 Score=41.33 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=18.2
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
..+|.+.|+.++.|+++++.+|+||||
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555566666777778888887
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.00 E-value=0.06 Score=24.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=13.3
Q ss_pred CCCCCEeeCcCCCCCCCcchhh
Q 048618 24 FKELEYLDLSANRFNNSVPKSL 45 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~~~ 45 (207)
+++|+.|+|++|.+....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777764444433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.00 E-value=0.06 Score=24.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=13.3
Q ss_pred CCCCCEeeCcCCCCCCCcchhh
Q 048618 24 FKELEYLDLSANRFNNSVPKSL 45 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~~~ 45 (207)
+++|+.|+|++|.+....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777764444433
No 82
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=93.91 E-value=0.011 Score=37.86 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=1.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcC
Q 048618 185 VFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
.++++++++.+++++.+|+||||
T Consensus 28 GIGiL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 28 GIGILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp SSS--------------------
T ss_pred cceeHHHHHHHHHHHhheeeeec
Confidence 34455566677777888888887
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.87 E-value=0.053 Score=44.49 Aligned_cols=90 Identities=30% Similarity=0.190 Sum_probs=42.0
Q ss_pred ccCCCCCCCEeeCcCC-CCCCCcc----hhhcCCCCCCeeeccCCc-CCCccchhhh-CCCCCCEEecCCCC-CCCchhH
Q 048618 20 EIGSFKELEYLDLSAN-RFNNSVP----KSLGSLLKLHYLSLSNNQ-FVQELPKELE-KLVQLSELDLSHNF-LGGELLS 91 (207)
Q Consensus 20 ~~~~l~~L~~L~L~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~ 91 (207)
....++.|+.|+++++ ......+ ......++|+.|+++++. ++...-..+. .+++|+.|.+.++. +++..-.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3345566666666652 1111111 112334556666666655 3332222222 25566666655555 4443333
Q ss_pred Hhh-cCCCCCEEeCCCCcC
Q 048618 92 QIC-NMESLEKLNLSHNNL 109 (207)
Q Consensus 92 ~~~-~l~~L~~L~l~~n~l 109 (207)
.+. .++.|++|+++++..
T Consensus 289 ~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhcCcccEEeeecCcc
Confidence 322 345566666665543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.33 E-value=0.0013 Score=48.31 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=44.9
Q ss_pred cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCC
Q 048618 21 IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLE 100 (207)
Q Consensus 21 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 100 (207)
+......+.||++.|++. .....|.-++++..|+++.|.+ ...|..+.....+..+++..|... ..|..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555555543 2333344455555555555554 244555555555555555555554 4455555555555
Q ss_pred EEeCCCCcCC
Q 048618 101 KLNLSHNNLS 110 (207)
Q Consensus 101 ~L~l~~n~l~ 110 (207)
.+++.+|.++
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 5555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.91 E-value=0.0011 Score=48.79 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=52.6
Q ss_pred hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCC
Q 048618 43 KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122 (207)
Q Consensus 43 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 122 (207)
..+..+.+...||++.|.+. .+...|+-++.+..++++.|.+. ..|..++....+..+++..|..+ ..|..++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34555566666666666653 23334555566666666666665 45555555555666666666655 55666666666
Q ss_pred CCEEECCCCcC
Q 048618 123 LSVIDISDNQL 133 (207)
Q Consensus 123 L~~l~l~~n~~ 133 (207)
++.+++-++++
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 66666666655
No 86
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.83 E-value=0.053 Score=37.00 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=17.2
Q ss_pred eeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 180 KWFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
..+++++++.+.+++++++++|++|+|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r 76 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIR 76 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEe
Confidence 477777777776666666665555443
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.70 E-value=0.077 Score=51.65 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=24.6
Q ss_pred eCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 103 NLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 103 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
||++|.|+...+..|..+++|+.|+|++|++.|.|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 45666666555566666666777777777777666654
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.29 E-value=0.049 Score=24.74 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=4.9
Q ss_pred CCCEEecCCCCCC
Q 048618 74 QLSELDLSHNFLG 86 (207)
Q Consensus 74 ~L~~L~l~~n~l~ 86 (207)
+|++|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 89
>PF15102 TMEM154: TMEM154 protein family
Probab=91.82 E-value=0.21 Score=33.89 Aligned_cols=27 Identities=7% Similarity=0.253 Sum_probs=13.5
Q ss_pred eeEeehHHHHH-HHHHHHHHHHHhhhhc
Q 048618 180 KWFAIVFPVLG-AVFVSMALIAIFILRK 206 (207)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r 206 (207)
+.++|+++.++ ++++++++++++++||
T Consensus 57 fiLmIlIP~VLLvlLLl~vV~lv~~~kR 84 (146)
T PF15102_consen 57 FILMILIPLVLLVLLLLSVVCLVIYYKR 84 (146)
T ss_pred eEEEEeHHHHHHHHHHHHHHHheeEEee
Confidence 37777777333 3334444444444444
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.41 E-value=0.0026 Score=52.34 Aligned_cols=108 Identities=34% Similarity=0.365 Sum_probs=55.4
Q ss_pred ccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCCcchhhc----CC-CCCCeeeccCCcCCCc----cchhh
Q 048618 3 LTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLG----SL-LKLHYLSLSNNQFVQE----LPKEL 69 (207)
Q Consensus 3 L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~ 69 (207)
+..|.|.+|.+... +...+...++|+.|++++|.+.+.....+. .. ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 45566667766643 223445667777777777777643322221 11 3345566666655543 23334
Q ss_pred hCCCCCCEEecCCCCCCC----chhHHhh----cCCCCCEEeCCCCcCC
Q 048618 70 EKLVQLSELDLSHNFLGG----ELLSQIC----NMESLEKLNLSHNNLS 110 (207)
Q Consensus 70 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~l~~n~l~ 110 (207)
.....++.++++.|.+.. ..+..+. ...++++|.+.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 445556666666665521 1122222 2455556666555554
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.23 E-value=0.31 Score=24.84 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.5
Q ss_pred ehHHHHHHHHHH
Q 048618 184 IVFPVLGAVFVS 195 (207)
Q Consensus 184 ~~~~~~~~~~~~ 195 (207)
+++++++.+.++
T Consensus 8 IIv~V~vg~~ii 19 (38)
T PF02439_consen 8 IIVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 92
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.077 Score=38.33 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhh-CCCCCCEEecCCC-CCCCchhHHhhcCCCCC
Q 048618 24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELE-KLVQLSELDLSHN-FLGGELLSQICNMESLE 100 (207)
Q Consensus 24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 100 (207)
-..++.++-+++.|..+.-+.+.++++++.|.+.+|.--+ ..-+-++ -.++|+.|+++.| .|++.....+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3456777888887776666667778888888877765322 1112222 3468999999977 47777777777888888
Q ss_pred EEeCCCCc
Q 048618 101 KLNLSHNN 108 (207)
Q Consensus 101 ~L~l~~n~ 108 (207)
.|.+.+-.
T Consensus 180 ~L~l~~l~ 187 (221)
T KOG3864|consen 180 RLHLYDLP 187 (221)
T ss_pred HHHhcCch
Confidence 88776543
No 93
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=88.92 E-value=0.4 Score=37.08 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhhc
Q 048618 191 AVFVSMALIAIFILRK 206 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~r 206 (207)
++++.+++..+++|||
T Consensus 268 IVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444566666
No 94
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=88.11 E-value=0.29 Score=32.23 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=4.9
Q ss_pred CCCCCCCCCCcc
Q 048618 158 CGGVKGMQPCKV 169 (207)
Q Consensus 158 c~~~~~~~~~~~ 169 (207)
|...+....|..
T Consensus 55 C~~~P~S~~C~~ 66 (129)
T PF12191_consen 55 CPAYPKSPFCQG 66 (129)
T ss_dssp HCC-TT-CCCCC
T ss_pred CCCCCCCccccC
Confidence 444455555543
No 95
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.45 E-value=0.18 Score=28.98 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=0.4
Q ss_pred HHhhhhc
Q 048618 200 AIFILRK 206 (207)
Q Consensus 200 ~~~~~~r 206 (207)
++|++|+
T Consensus 32 ~iyR~rk 38 (64)
T PF01034_consen 32 LIYRMRK 38 (64)
T ss_dssp -----S-
T ss_pred HHHHHHh
Confidence 3444444
No 96
>PHA03265 envelope glycoprotein D; Provisional
Probab=86.59 E-value=0.57 Score=36.56 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=14.3
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
..+++++.+++-++++.++.+++||||
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~ 375 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRK 375 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhh
Confidence 444444455555555555556666554
No 97
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=86.40 E-value=0.49 Score=36.89 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=14.9
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
+.-|+++++.+++++++++++++.|||
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 445544444455555555566666665
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.06 E-value=0.5 Score=39.31 Aligned_cols=64 Identities=34% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCC--CCCCc-hhHHhhcCCCCCEEeCCCCcCCC
Q 048618 47 SLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHN--FLGGE-LLSQICNMESLEKLNLSHNNLSG 111 (207)
Q Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 111 (207)
+.+.+..+.+++|++... ....-+..++|+.|+|++| .+... ..+.+ ....|++|.+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence 344555666666665433 1112233456666677666 33211 11111 22346666666666653
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=86.03 E-value=0.73 Score=33.48 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=12.7
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
.++++++++++++++++++++.+||
T Consensus 40 ~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 40 MIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeecchhhhHHHHHHHHHHHHHh
Confidence 5555555555555555554444344
No 100
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=85.67 E-value=1.9 Score=22.90 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=16.7
Q ss_pred eEeehHHHHHHHHHHHHHHHHh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIF 202 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~ 202 (207)
|+.++.++++++++++++.+.|
T Consensus 2 Wl~V~~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGICW 23 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHHHH
Confidence 6778888888888777777654
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.78 E-value=1 Score=21.22 Aligned_cols=14 Identities=64% Similarity=0.831 Sum_probs=8.1
Q ss_pred CCCEEecCCCCCCC
Q 048618 74 QLSELDLSHNFLGG 87 (207)
Q Consensus 74 ~L~~L~l~~n~l~~ 87 (207)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666666543
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.34 E-value=0.91 Score=21.16 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=7.9
Q ss_pred CccEEECCCCCCc
Q 048618 2 SLTKLILRGNQLT 14 (207)
Q Consensus 2 ~L~~L~l~~n~i~ 14 (207)
+|+.|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4566666666665
No 103
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.47 E-value=0.76 Score=37.08 Aligned_cols=112 Identities=24% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCCCCCEeeCcCCCC-CCCcchhh-cCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCC-CCchhHHh---
Q 048618 22 GSFKELEYLDLSANRF-NNSVPKSL-GSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFL-GGELLSQI--- 93 (207)
Q Consensus 22 ~~l~~L~~L~L~~n~i-~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~--- 93 (207)
.+..+|++|.+..++. +......+ .+.+.|+.+++..+..... +.+.-.+++.|+.+.++++.. ++.....+
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 4567777777777652 22111112 3456777777776654321 222234567888888888864 32211222
Q ss_pred -hcCCCCCEEeCCCCcCCC-CccccccCCCCCCEEECCCCcC
Q 048618 94 -CNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 94 -~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
..+..|+.+.|++++... ..-+.+..+++|+.+++-+++-
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 245677788888876542 2334566677888887777654
No 104
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=83.16 E-value=2.9 Score=30.34 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=12.7
Q ss_pred EeehHHHHH--HHHHHHHHHHHhhhhcC
Q 048618 182 FAIVFPVLG--AVFVSMALIAIFILRKR 207 (207)
Q Consensus 182 ~~~~~~~~~--~~~~~~~~~~~~~~~rr 207 (207)
..|++.+.+ .+++++++.++++++||
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 444444444 33334444456777665
No 105
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=81.37 E-value=0.72 Score=30.44 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHhhhhc
Q 048618 199 IAIFILRK 206 (207)
Q Consensus 199 ~~~~~~~r 206 (207)
++++.+||
T Consensus 99 lv~rrcrr 106 (129)
T PF12191_consen 99 LVWRRCRR 106 (129)
T ss_dssp --------
T ss_pred HHHhhhhc
Confidence 33444444
No 106
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.74 E-value=1.5 Score=20.44 Aligned_cols=13 Identities=54% Similarity=0.608 Sum_probs=7.2
Q ss_pred CccEEECCCCCCc
Q 048618 2 SLTKLILRGNQLT 14 (207)
Q Consensus 2 ~L~~L~l~~n~i~ 14 (207)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 107
>PTZ00046 rifin; Provisional
Probab=79.11 E-value=2.3 Score=33.67 Aligned_cols=7 Identities=29% Similarity=0.652 Sum_probs=3.2
Q ss_pred HhhhhcC
Q 048618 201 IFILRKR 207 (207)
Q Consensus 201 ~~~~~rr 207 (207)
+.+||||
T Consensus 337 ILRYRRK 343 (358)
T PTZ00046 337 ILRYRRK 343 (358)
T ss_pred HHHhhhc
Confidence 4444543
No 108
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=79.01 E-value=2.3 Score=33.56 Aligned_cols=7 Identities=29% Similarity=0.652 Sum_probs=3.2
Q ss_pred HhhhhcC
Q 048618 201 IFILRKR 207 (207)
Q Consensus 201 ~~~~~rr 207 (207)
+.+||||
T Consensus 332 ILRYRRK 338 (353)
T TIGR01477 332 ILRYRRK 338 (353)
T ss_pred HHHhhhc
Confidence 4445543
No 109
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=78.00 E-value=0.7 Score=35.54 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcC
Q 048618 196 MALIAIFILRKR 207 (207)
Q Consensus 196 ~~~~~~~~~~rr 207 (207)
++++++++||||
T Consensus 162 A~iIa~icyrrk 173 (290)
T PF05454_consen 162 AGIIACICYRRK 173 (290)
T ss_dssp ------------
T ss_pred HHHHHHHhhhhh
Confidence 334444444443
No 110
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=76.39 E-value=4.8 Score=21.83 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.5
Q ss_pred HHhhhh
Q 048618 200 AIFILR 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
++|.++
T Consensus 26 ~~w~~~ 31 (49)
T PF05545_consen 26 VIWAYR 31 (49)
T ss_pred HHHHHc
Confidence 344443
No 111
>PRK00523 hypothetical protein; Provisional
Probab=76.08 E-value=2.5 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=13.3
Q ss_pred EeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 182 FAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
.++++.++++++++.+++.+|+-||
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556665543
No 112
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=75.15 E-value=5.3 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=15.1
Q ss_pred EeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 182 FAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
.+++.+.+.+.++...+.++..|||
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY~R 31 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQYRR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 3455556656666666666666665
No 113
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.55 E-value=2.4 Score=35.51 Aligned_cols=64 Identities=25% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCCCCCEEecCCCCCCCch--hHHhhcCCCCCEEeCCCC--cCCCCccccccCC--CCCCEEECCCCcCccc
Q 048618 71 KLVQLSELDLSHNFLGGEL--LSQICNMESLEKLNLSHN--NLSGSIPNCFEGM--HGLSVIDISDNQLQGP 136 (207)
Q Consensus 71 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~--~~L~~l~l~~n~~~~~ 136 (207)
+.+.+..++|++|++.... ...-...++|..|+|++| .+.. ...+..+ ..|++|-+.||+++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4567888999999886432 122235789999999999 4432 1222222 2478899999998654
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=73.51 E-value=3 Score=30.02 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=17.6
Q ss_pred CeeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 179 AKWFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
...++|++.++++++++++.+.+++.||
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhheeecc
Confidence 3477788877777766666554444443
No 115
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=73.35 E-value=2.4 Score=30.88 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=20.7
Q ss_pred CCeeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 178 GAKWFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
..+...+++++++++.|++++++..++|+
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~ 62 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVRY 62 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHHH
Confidence 33567777777777777777788888775
No 116
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=72.00 E-value=7 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=14.5
Q ss_pred EeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 182 FAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
.+++.+.+-+.++..++.++..|||
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQYrR 31 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQYRR 31 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555666666655
No 117
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=71.22 E-value=9.8 Score=32.63 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=12.8
Q ss_pred CCeeEeehHHHHHHHHHHHHH-HHHhhhhc
Q 048618 178 GAKWFAIVFPVLGAVFVSMAL-IAIFILRK 206 (207)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 206 (207)
...|+.+.+.+-+++++++++ +.|.+||+
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 334665555443333333333 34444443
No 118
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=70.92 E-value=7.5 Score=19.49 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=14.1
Q ss_pred EeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 182 FAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
.+++.+.+-+.++..++.++..|||
T Consensus 7 ~GiVLGlipiTl~GlfvaAylQYrR 31 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWNQYKR 31 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555556666655
No 119
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=69.61 E-value=5.2 Score=32.53 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=13.8
Q ss_pred eEeehHHHHHHHHHHHHHHHHhh-hhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFI-LRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~-~~r 206 (207)
+.+|.+.++++|-.++.|+.||+ +|.
T Consensus 369 IaGIsvavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhheeecc
Confidence 66666665555554555554444 443
No 120
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=66.27 E-value=12 Score=22.28 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=19.3
Q ss_pred CCeeEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 178 GAKWFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
......++++++-++-+++.+.+++.+||+
T Consensus 28 ~~~avaVviPl~L~LCiLvl~yai~~fkrk 57 (74)
T PF11857_consen 28 TVNAVAVVIPLVLLLCILVLIYAIFQFKRK 57 (74)
T ss_pred ceeEEEEeHHHHHHHHHHHHHHHhheeeec
Confidence 334777777777666666666666666654
No 121
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=66.20 E-value=1.9 Score=32.62 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
++++.+.-++.|++.+..+.||+||||
T Consensus 227 vf~lLVPSiILVLLaVGGLLfYr~rrR 253 (285)
T PF05337_consen 227 VFYLLVPSIILVLLAVGGLLFYRRRRR 253 (285)
T ss_dssp ---------------------------
T ss_pred cccccccchhhhhhhccceeeeccccc
Confidence 555555555556666666678888776
No 122
>PHA03049 IMV membrane protein; Provisional
Probab=66.17 E-value=12 Score=21.75 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhhc
Q 048618 190 GAVFVSMALIAIFILRK 206 (207)
Q Consensus 190 ~~~~~~~~~~~~~~~~r 206 (207)
++++++++++++-+|+|
T Consensus 9 iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 9 IICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444444444443
No 123
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=64.78 E-value=13 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 048618 190 GAVFVSMALIAIFILR 205 (207)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (207)
++++++++++++-+|+
T Consensus 9 ~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 9 IICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444343343
No 124
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=64.40 E-value=14 Score=23.43 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=12.4
Q ss_pred CCeeEeehHHHHHHHHHHHHH
Q 048618 178 GAKWFAIVFPVLGAVFVSMAL 198 (207)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ 198 (207)
+..|.+.+++++++++.-+++
T Consensus 14 g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHH
Confidence 455777777666655544443
No 125
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=63.57 E-value=10 Score=23.69 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhc
Q 048618 192 VFVSMALIAIFILRK 206 (207)
Q Consensus 192 ~~~~~~~~~~~~~~r 206 (207)
+++++++++|+++||
T Consensus 77 ~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 77 FLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHhhhc
Confidence 344444444555554
No 126
>PRK01844 hypothetical protein; Provisional
Probab=62.01 E-value=9.6 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 048618 190 GAVFVSMALIAIFILR 205 (207)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (207)
++++++.+++.+|+-|
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445555544
No 127
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=61.02 E-value=8.3 Score=31.45 Aligned_cols=108 Identities=24% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCccEEECCCCC-CcccCCccc-CCCCCCCEeeCcCCCCCCCc--chhhcCCCCCCeeeccCCcCCCcc-----chhhhC
Q 048618 1 NSLTKLILRGNQ-LTGRLPTEI-GSFKELEYLDLSANRFNNSV--PKSLGSLLKLHYLSLSNNQFVQEL-----PKELEK 71 (207)
Q Consensus 1 ~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~ 71 (207)
++|+.|-++++. ++..--..+ .+.+.|+.+++..+...... ...-.+.+.|+.+.++.+...... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 367788888875 333222222 56789999999988754211 111235678999999977653322 111234
Q ss_pred CCCCCEEecCCCCCCC-chhHHhhcCCCCCEEeCCCCc
Q 048618 72 LVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNN 108 (207)
Q Consensus 72 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 108 (207)
+..++.+.++++.... .....+...++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5678999999997643 333455667888888887665
No 128
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=60.96 E-value=14 Score=22.85 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q 048618 187 PVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~rr 207 (207)
+.++..+++.++..+++||+|
T Consensus 79 PFL~Gc~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 79 PFLAGCLILGVIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444455555554
No 129
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=59.55 E-value=3 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.216 Sum_probs=7.8
Q ss_pred eEeehHHHHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVSMAL 198 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (207)
...+++++++++.+++++
T Consensus 61 ~~iili~lls~v~IlVil 78 (101)
T PF06024_consen 61 GNIILISLLSFVCILVIL 78 (101)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 444444444444444333
No 130
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=59.13 E-value=4.4 Score=25.31 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=11.1
Q ss_pred eeEeehHHHHHHHHHHHHHHHHhhhh
Q 048618 180 KWFAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
.|.+...+.. ++++++++.+++++|
T Consensus 41 yWpyLA~GGG-~iLilIii~Lv~CC~ 65 (98)
T PF07204_consen 41 YWPYLAAGGG-LILILIIIALVCCCR 65 (98)
T ss_pred hhHHhhccch-hhhHHHHHHHHHHhh
Confidence 3666555543 333333344444443
No 131
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=58.32 E-value=10 Score=24.24 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCCCeeEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 175 QNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
.........++++++++++++.++..|++.|.|
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 344555555555566666666666655555543
No 132
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.18 E-value=8.3 Score=17.52 Aligned_cols=11 Identities=45% Similarity=0.474 Sum_probs=5.5
Q ss_pred CCCCEeeCcCC
Q 048618 25 KELEYLDLSAN 35 (207)
Q Consensus 25 ~~L~~L~L~~n 35 (207)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 133
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=58.03 E-value=14 Score=27.01 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=14.4
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
|..-.+++++++++++++++++++|+|
T Consensus 180 w~pn~lgiG~v~I~~l~~~~~~l~~~r 206 (209)
T PF11353_consen 180 WVPNPLGIGTVLIVLLILLGFLLRRRR 206 (209)
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555543
No 134
>PF15345 TMEM51: Transmembrane protein 51
Probab=56.66 E-value=19 Score=26.76 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=14.6
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
++++++++ +++++++.++.-++-|||
T Consensus 60 VAyVLVG~-Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 60 VAYVLVGS-GVALLLLSICLSIRDKRR 85 (233)
T ss_pred EEEehhhH-HHHHHHHHHHHHHHHHHH
Confidence 55555555 566666666655555543
No 135
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.35 E-value=9.7 Score=38.36 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=22.5
Q ss_pred eCcCCCCCCCcchhhcCCCCCCeeeccCCcC
Q 048618 31 DLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61 (207)
Q Consensus 31 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 61 (207)
||++|+|....+..|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4677777766666777777777777777754
No 136
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=53.52 E-value=7.4 Score=21.80 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=15.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIF 202 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~ 202 (207)
...+++++++++++++++++++
T Consensus 30 v~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 30 VFTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred heeEehhHHHHHHHHHhheeEE
Confidence 6778888887776666655443
No 137
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=51.34 E-value=19 Score=25.30 Aligned_cols=23 Identities=30% Similarity=0.363 Sum_probs=10.7
Q ss_pred ehHHHHHHHHHHHHHHHHhhhhc
Q 048618 184 IVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
+|++++.+++++.+++.+|+.||
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33334444444455555554444
No 138
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=50.91 E-value=21 Score=26.36 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=7.7
Q ss_pred eEeehHHHHHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVSMALI 199 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~ 199 (207)
++.+++.++++.+.++.++
T Consensus 190 ilpvvIaliVitl~vf~Lv 208 (259)
T PF07010_consen 190 ILPVVIALIVITLSVFTLV 208 (259)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 139
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.75 E-value=19 Score=21.25 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhhc
Q 048618 193 FVSMALIAIFILRK 206 (207)
Q Consensus 193 ~~~~~~~~~~~~~r 206 (207)
+++.+++.+|+-||
T Consensus 14 ll~G~~~G~fiark 27 (71)
T COG3763 14 LLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444555543
No 140
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=50.46 E-value=44 Score=24.25 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=16.8
Q ss_pred CCCCCCeeEeehHHHHHHHHHHHHHHHHhhhh
Q 048618 174 KQNSGAKWFAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
.+++++.|....++++.+.+++..+.+..+.|
T Consensus 57 s~ss~T~WvLY~VI~VSaaVIagAVPlLLRAR 88 (207)
T PF10812_consen 57 SGSSGTPWVLYAVIGVSAAVIAGAVPLLLRAR 88 (207)
T ss_pred CCCCCCCEeehHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666665555555555554444433
No 141
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=50.28 E-value=16 Score=19.38 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=9.3
Q ss_pred eehHHHHHHHHHHHHHHHHhhh
Q 048618 183 AIVFPVLGAVFVSMALIAIFIL 204 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
++.....+.+++++..++..++
T Consensus 7 yVW~sYg~t~l~l~~li~~~~~ 28 (45)
T TIGR03141 7 YVWLAYGITALVLAGLILWSLL 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 142
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=48.44 E-value=25 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=12.8
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
|+..+++++.+++++.+++..|+.++
T Consensus 202 ~f~wl~i~~~l~~~~Y~i~g~~~n~~ 227 (268)
T PF09451_consen 202 FFTWLFIILFLFLAAYLIFGSWYNYN 227 (268)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeec
Confidence 44444444444555555555554443
No 143
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=47.73 E-value=6.1 Score=27.48 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
..+|++++++.+-++..+++++.||
T Consensus 131 LVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -------------------------
T ss_pred eeeehhhHHHHHHHHhheeeEEeeh
Confidence 5555555555555554444444443
No 144
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=46.11 E-value=13 Score=31.73 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhhhcC
Q 048618 191 AVFVSMALIAIFILRKR 207 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~rr 207 (207)
++++++.+++||+||||
T Consensus 534 ~~~l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 534 LLLLLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444445555554
No 145
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=45.08 E-value=25 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=6.5
Q ss_pred eehHHHHHHHHHHHHHH
Q 048618 183 AIVFPVLGAVFVSMALI 199 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (207)
.+++.++++++++++++
T Consensus 120 ~i~~~i~g~ll~i~~gi 136 (145)
T PF10661_consen 120 TILLSIGGILLAICGGI 136 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334333333
No 146
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=44.94 E-value=15 Score=26.11 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=4.9
Q ss_pred eEeehHHHHHH
Q 048618 181 WFAIVFPVLGA 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
+.+|+++++++
T Consensus 81 ivgvi~~Vi~I 91 (179)
T PF13908_consen 81 IVGVICGVIAI 91 (179)
T ss_pred eeehhhHHHHH
Confidence 44454444433
No 147
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=44.90 E-value=14 Score=30.01 Aligned_cols=27 Identities=19% Similarity=-0.018 Sum_probs=20.5
Q ss_pred eeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 180 KWFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
....|.++.|++++|+..++.|+.||.
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhhhe
Confidence 366677777777777778899999974
No 148
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=42.28 E-value=41 Score=21.28 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=13.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFIL 204 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
|-.+.+..+++++++-+++..++|
T Consensus 18 WeIfLItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555444433333
No 149
>PHA03164 hypothetical protein; Provisional
Probab=42.21 E-value=15 Score=21.96 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=7.4
Q ss_pred eehHHHHHHHHHHHHHHH
Q 048618 183 AIVFPVLGAVFVSMALIA 200 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~ 200 (207)
.++...+++.++++++++
T Consensus 60 FlvLtgLaIamILfiifv 77 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFV 77 (88)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 150
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=42.17 E-value=43 Score=18.66 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.2
Q ss_pred HHHhhh
Q 048618 199 IAIFIL 204 (207)
Q Consensus 199 ~~~~~~ 204 (207)
++++++
T Consensus 44 ~~~~~~ 49 (55)
T PF03988_consen 44 LALWYR 49 (55)
T ss_pred HHHHHH
Confidence 333333
No 151
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=40.81 E-value=35 Score=21.23 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=3.2
Q ss_pred eEeehHHH
Q 048618 181 WFAIVFPV 188 (207)
Q Consensus 181 ~~~~~~~~ 188 (207)
|-.++.++
T Consensus 34 ws~vv~v~ 41 (91)
T PF01708_consen 34 WSRVVEVA 41 (91)
T ss_pred ceeEeeee
Confidence 44444333
No 152
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=40.14 E-value=44 Score=15.65 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=4.9
Q ss_pred HHHHhhhhcC
Q 048618 198 LIAIFILRKR 207 (207)
Q Consensus 198 ~~~~~~~~rr 207 (207)
...+..+|||
T Consensus 18 ~l~~l~rRRR 27 (27)
T TIGR03382 18 ALAALLRRRR 27 (27)
T ss_pred HHHHHHhccC
Confidence 4444555554
No 153
>PTZ00087 thrombosponding-related protein; Provisional
Probab=40.11 E-value=76 Score=24.31 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=4.9
Q ss_pred eEeehHHHHHH
Q 048618 181 WFAIVFPVLGA 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
...++.+++.+
T Consensus 298 i~~i~~piv~v 308 (340)
T PTZ00087 298 ILIILLPIVLI 308 (340)
T ss_pred EeeeehhHHHH
Confidence 44444444433
No 154
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=39.67 E-value=40 Score=18.14 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhhc
Q 048618 190 GAVFVSMALIAIFILRK 206 (207)
Q Consensus 190 ~~~~~~~~~~~~~~~~r 206 (207)
+.++.+++.+..|-|-|
T Consensus 27 ~avL~v~V~i~v~kwiR 43 (46)
T PF10389_consen 27 GAVLGVIVGIAVYKWIR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 155
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=39.62 E-value=1.3e+02 Score=31.11 Aligned_cols=17 Identities=18% Similarity=-0.009 Sum_probs=9.6
Q ss_pred CEEECCCCcCcccCCCC
Q 048618 124 SVIDISDNQLQGPVPNS 140 (207)
Q Consensus 124 ~~l~l~~n~~~~~~~~~ 140 (207)
-+-...+|.+.|.||..
T Consensus 3915 gtCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3915 GTCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred CEEEecCCCeeEeCCCC
Confidence 34455556666666654
No 156
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=39.23 E-value=34 Score=26.31 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=7.3
Q ss_pred eEeehHHHHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVSMAL 198 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (207)
.+.-++.+++++++++++
T Consensus 276 ~l~piil~IG~vl~i~~I 293 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFI 293 (305)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 333444444444444333
No 157
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=39.18 E-value=53 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=12.5
Q ss_pred CCCCeeEeehHHHHHHHHHHHHHH
Q 048618 176 NSGAKWFAIVFPVLGAVFVSMALI 199 (207)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ 199 (207)
.++..+.+|+++++.+..++..++
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~ 81 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIA 81 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHH
Confidence 335556666666655444444433
No 158
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=58 Score=18.66 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.4
Q ss_pred HHhhhh
Q 048618 200 AIFILR 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
++|.+|
T Consensus 26 i~~ayr 31 (60)
T COG4736 26 IYFAYR 31 (60)
T ss_pred HHHHhc
Confidence 344443
No 159
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=38.57 E-value=24 Score=18.80 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=6.4
Q ss_pred ehHHHHHHHHHHHHHH
Q 048618 184 IVFPVLGAVFVSMALI 199 (207)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (207)
+....++.+++++..+
T Consensus 7 VW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 160
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=38.22 E-value=45 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 048618 188 VLGAVFVSMALIAIFILR 205 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ 205 (207)
.+++++++.++.++|.+|
T Consensus 156 ~~VlA~~VA~L~~~F~RR 173 (215)
T PF05084_consen 156 AVVLAVSVAMLTWFFLRR 173 (215)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444444
No 161
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=34.31 E-value=60 Score=15.54 Aligned_cols=7 Identities=14% Similarity=0.615 Sum_probs=3.0
Q ss_pred HhhhhcC
Q 048618 201 IFILRKR 207 (207)
Q Consensus 201 ~~~~~rr 207 (207)
+.++|+|
T Consensus 23 ~Li~k~~ 29 (29)
T TIGR03063 23 FLIRKRK 29 (29)
T ss_pred HHhhccC
Confidence 3444443
No 162
>PRK10132 hypothetical protein; Provisional
Probab=34.15 E-value=63 Score=20.98 Aligned_cols=7 Identities=0% Similarity=0.244 Sum_probs=3.5
Q ss_pred HhhhhcC
Q 048618 201 IFILRKR 207 (207)
Q Consensus 201 ~~~~~rr 207 (207)
+.+.|||
T Consensus 102 ~Ll~RR~ 108 (108)
T PRK10132 102 ALLSLRK 108 (108)
T ss_pred HHHhccC
Confidence 3455554
No 163
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=33.89 E-value=49 Score=17.70 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=4.7
Q ss_pred HHHHHHhhhhc
Q 048618 196 MALIAIFILRK 206 (207)
Q Consensus 196 ~~~~~~~~~~r 206 (207)
+.+.+.|+++|
T Consensus 34 lt~yal~r~~~ 44 (46)
T PF11431_consen 34 LTIYALWRRRR 44 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 33344444444
No 164
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.84 E-value=14 Score=28.47 Aligned_cols=8 Identities=25% Similarity=0.820 Sum_probs=0.0
Q ss_pred HHhhhhcC
Q 048618 200 AIFILRKR 207 (207)
Q Consensus 200 ~~~~~~rr 207 (207)
+++++|||
T Consensus 68 IImlF~Rr 75 (381)
T PF05297_consen 68 IIMLFKRR 75 (381)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 34444554
No 165
>PHA02955 hypothetical protein; Provisional
Probab=33.68 E-value=48 Score=24.35 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=5.5
Q ss_pred CCCEEECCCC
Q 048618 122 GLSVIDISDN 131 (207)
Q Consensus 122 ~L~~l~l~~n 131 (207)
+.+.+++..|
T Consensus 119 dIQ~i~ig~C 128 (213)
T PHA02955 119 DIQHFNIGTC 128 (213)
T ss_pred eeeeeeeccc
Confidence 3455666555
No 166
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=32.91 E-value=20 Score=26.46 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=19.7
Q ss_pred CCCCCCeeEeehHHHHHHHHHHHHHHHHhhhh
Q 048618 174 KQNSGAKWFAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
..+....|+.+...+++++.++..++++-+.+
T Consensus 210 ~ksk~s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 210 DKSKLSYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444568888777777766666665554443
No 167
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.78 E-value=50 Score=25.97 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
++++.+++++++++|++||+
T Consensus 303 ~l~im~~i~~~~~~~fkrk~ 322 (324)
T PRK09546 303 FCLLLVVLIGGVAWWLKRSK 322 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33334444444445555543
No 168
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=31.54 E-value=43 Score=29.77 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 048618 188 VLGAVFVSMALIAIFILR 205 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ 205 (207)
.+.++++++.++++|++|
T Consensus 282 ~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 282 TALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 333333333344344433
No 169
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=31.37 E-value=20 Score=28.97 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.2
Q ss_pred HHHhhhhcC
Q 048618 199 IAIFILRKR 207 (207)
Q Consensus 199 ~~~~~~~rr 207 (207)
+.++++|||
T Consensus 406 ~~~~v~rrr 414 (436)
T PTZ00208 406 FFIMVKRRR 414 (436)
T ss_pred hheeeeecc
Confidence 334445554
No 170
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=31.22 E-value=58 Score=21.76 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=10.4
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFIL 204 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
.++|.+.+.-..++++.+++-+.+
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvR 67 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVR 67 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444444444433
No 171
>PF15431 TMEM190: Transmembrane protein 190
Probab=30.65 E-value=63 Score=20.95 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
..+.++++..+..+|+.|||
T Consensus 68 C~gll~Li~~iclFWWAkRr 87 (134)
T PF15431_consen 68 CGGLLLLICSICLFWWAKRR 87 (134)
T ss_pred HHhHHHHHHHHHHHHHHHHh
Confidence 33444555555566665654
No 172
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=29.99 E-value=56 Score=20.05 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.1
Q ss_pred eeEeehHHHHHHHHH
Q 048618 180 KWFAIVFPVLGAVFV 194 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~ 194 (207)
.|.+|++...+.+++
T Consensus 15 ~~yyiiA~gga~llL 29 (87)
T PF11980_consen 15 YWYYIIAMGGALLLL 29 (87)
T ss_pred eeeHHHhhccHHHHH
Confidence 455555544443333
No 173
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.50 E-value=55 Score=25.51 Aligned_cols=25 Identities=24% Similarity=-0.033 Sum_probs=11.0
Q ss_pred eehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 183 AIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
+....++++.++++++.++|++||+
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkrk~ 316 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRRKG 316 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333344444444444445555543
No 174
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=29.17 E-value=52 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred eeEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618 180 KWFAIVFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
..+++++.+.+.++++.++.+...++||
T Consensus 243 ~~~g~~~v~~G~~~lL~LFc~l~~~~Rr 270 (276)
T PF07413_consen 243 ALIGMFFVASGAFMLLSLFCCLSIWRRR 270 (276)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666666654
No 175
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=29.15 E-value=61 Score=24.58 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.2
Q ss_pred Hhhhhc
Q 048618 201 IFILRK 206 (207)
Q Consensus 201 ~~~~~r 206 (207)
+|+.||
T Consensus 243 ~~~~~~ 248 (249)
T PRK15348 243 FCLRRR 248 (249)
T ss_pred HHHHhh
Confidence 333333
No 176
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=28.99 E-value=1.2e+02 Score=17.24 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=5.8
Q ss_pred EeehHHHHHHHHHH
Q 048618 182 FAIVFPVLGAVFVS 195 (207)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (207)
+++.+++.+++.++
T Consensus 4 l~~Lipvsi~l~~v 17 (58)
T COG3197 4 LYILIPVSILLGAV 17 (58)
T ss_pred eeeHHHHHHHHHHH
Confidence 34444444333333
No 177
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.74 E-value=1e+02 Score=16.48 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q 048618 198 LIAIFILR 205 (207)
Q Consensus 198 ~~~~~~~~ 205 (207)
+++|+.+|
T Consensus 26 ~F~~F~~K 33 (54)
T PF06716_consen 26 VFIWFVYK 33 (54)
T ss_pred HHHHHHHH
Confidence 33444443
No 178
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=28.05 E-value=95 Score=20.77 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhh
Q 048618 191 AVFVSMALIAIFIL 204 (207)
Q Consensus 191 ~~~~~~~~~~~~~~ 204 (207)
.+++++++++|..+
T Consensus 27 lVl~lI~~~aWLlk 40 (124)
T PRK11486 27 GIIALILAAAWLVK 40 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333434433
No 179
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.43 E-value=63 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.494 Sum_probs=13.0
Q ss_pred EeehHHHHHHHHHHHHHHHHhhhh
Q 048618 182 FAIVFPVLGAVFVSMALIAIFILR 205 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
..+.++++++++++++.+++|+=.
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666533
No 180
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.32 E-value=1.5e+02 Score=24.82 Aligned_cols=14 Identities=14% Similarity=-0.128 Sum_probs=6.4
Q ss_pred CCCEEECCCCcCcc
Q 048618 122 GLSVIDISDNQLQG 135 (207)
Q Consensus 122 ~L~~l~l~~n~~~~ 135 (207)
.+.......+++.+
T Consensus 76 ~~~~~~~~~~~~~~ 89 (513)
T KOG2052|consen 76 TLEESLPRCNPFKC 89 (513)
T ss_pred ccccccccCCCccc
Confidence 34444444554443
No 181
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=26.39 E-value=15 Score=29.61 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
++-++++++++++|+.||||
T Consensus 353 ~~N~v~lllg~~~~~~~rk~ 372 (374)
T TIGR03503 353 VGNVVILLLGGIGFFVWRKK 372 (374)
T ss_pred hhhhhhhhhheeeEEEEEEe
Confidence 33344444455556656654
No 182
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=26.26 E-value=66 Score=24.12 Aligned_cols=31 Identities=13% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCCCeeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 176 NSGAKWFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
..+..|+..++.++++++++=.++-+++-||
T Consensus 190 ~~~~~wla~~Lm~~G~fI~irsi~dY~rVKR 220 (233)
T PF10176_consen 190 SQSNPWLAYILMAFGWFIFIRSIIDYWRVKR 220 (233)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344588888888888888877777777665
No 183
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.86 E-value=82 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 048618 188 VLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~r 206 (207)
++++.++++++.++|++||
T Consensus 301 ~l~~m~~~~~~~~~~frrk 319 (322)
T COG0598 301 ALILMLLLALLLYLYFRRK 319 (322)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333444444444555554
No 184
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.56 E-value=92 Score=24.12 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.4
Q ss_pred Hhhhhc
Q 048618 201 IFILRK 206 (207)
Q Consensus 201 ~~~~~r 206 (207)
.+++||
T Consensus 252 ~~~~r~ 257 (281)
T PF12768_consen 252 AYIRRR 257 (281)
T ss_pred HHHHhh
Confidence 334444
No 185
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=25.45 E-value=1.1e+02 Score=18.80 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 048618 188 VLGAVFVSMALI 199 (207)
Q Consensus 188 ~~~~~~~~~~~~ 199 (207)
++++++++++++
T Consensus 30 ILivLVIIiLlI 41 (85)
T PF10717_consen 30 ILIVLVIIILLI 41 (85)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 186
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=25.30 E-value=58 Score=21.42 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=4.0
Q ss_pred HHHHHHHhhhh
Q 048618 195 SMALIAIFILR 205 (207)
Q Consensus 195 ~~~~~~~~~~~ 205 (207)
+..++.+++||
T Consensus 73 ~s~~lLI~WYR 83 (118)
T PF10856_consen 73 ISAILLIFWYR 83 (118)
T ss_pred HHHHhheeehh
Confidence 33333333333
No 187
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=25.04 E-value=1.2e+02 Score=16.52 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=11.3
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
...+-+.+++.++++...+.....||
T Consensus 23 i~~lP~~~~Gi~Lii~g~v~r~~~rk 48 (49)
T PF11384_consen 23 IQALPAILIGIGLIISGGVGRRRRRK 48 (49)
T ss_pred hhccHHHHHhHHHHhhhhhhhhhhcc
Confidence 33444444444444444444444444
No 188
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=90 Score=21.62 Aligned_cols=16 Identities=13% Similarity=0.166 Sum_probs=6.5
Q ss_pred ehHHHHHHHHHHHHHH
Q 048618 184 IVFPVLGAVFVSMALI 199 (207)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (207)
.+.++.-++++++.++
T Consensus 106 ~lLW~~Pv~llllG~~ 121 (153)
T COG3088 106 LLLWGLPVVLLLLGGV 121 (153)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3444444444443333
No 189
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=24.34 E-value=28 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCeeEeehHHHHHHHHHHH
Q 048618 178 GAKWFAIVFPVLGAVFVSM 196 (207)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~ 196 (207)
+..+...+++++++++.++
T Consensus 99 ~~~~~lW~~P~~~l~~g~~ 117 (148)
T PF03918_consen 99 GFTWLLWLGPFLLLLLGGA 117 (148)
T ss_dssp -------------------
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 190
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.81 E-value=1.1e+02 Score=16.79 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.9
Q ss_pred eehHHHHHHHHHHHHHHH
Q 048618 183 AIVFPVLGAVFVSMALIA 200 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~ 200 (207)
.+.+.+.+++++++.+++
T Consensus 15 rigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHH
Confidence 344444444444444443
No 191
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=23.57 E-value=27 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=0.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFI 203 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ 203 (207)
|..++.+.+...++++++++.++
T Consensus 215 ~~~iAL~sl~SLVIGFvlG~l~W 237 (273)
T PF02404_consen 215 WPAIALPSLFSLVIGFVLGALYW 237 (273)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444444433
No 192
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=22.93 E-value=1e+02 Score=14.45 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.9
Q ss_pred HHHhhhhcC
Q 048618 199 IAIFILRKR 207 (207)
Q Consensus 199 ~~~~~~~rr 207 (207)
+..+.+|||
T Consensus 19 ~~~~~rR~r 27 (27)
T TIGR03867 19 LLGFARRRR 27 (27)
T ss_pred hhhHHhhcC
Confidence 334444443
No 193
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=22.37 E-value=1.5e+02 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.477 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 048618 187 PVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~r 206 (207)
.+++++++++.++..+.++|
T Consensus 56 ~iLa~lF~i~~i~L~~~~~~ 75 (86)
T COG1314 56 AILAVLFFIISLVLALLNSK 75 (86)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555544
No 194
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=22.23 E-value=91 Score=24.61 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
++++.+++.++.++|++||+
T Consensus 295 ~l~~~~~~~~~~~~~f~rk~ 314 (316)
T PRK11085 295 AIILMILAGLAPYLYFKRKN 314 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 33334444444445555543
No 195
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.19 E-value=1.3e+02 Score=19.07 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhhh
Q 048618 191 AVFVSMALIAIFIL 204 (207)
Q Consensus 191 ~~~~~~~~~~~~~~ 204 (207)
+++++++++...+|
T Consensus 25 ~~FiILLIi~~~IW 38 (121)
T PF10669_consen 25 VVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333444444444
No 196
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=21.92 E-value=76 Score=19.46 Aligned_cols=21 Identities=5% Similarity=0.238 Sum_probs=9.6
Q ss_pred EeehHHHHHHHHHHHHHHHHh
Q 048618 182 FAIVFPVLGAVFVSMALIAIF 202 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (207)
...+++++++++++.++..++
T Consensus 16 G~~iv~~~al~~l~~~isGl~ 36 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLY 36 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444444333
No 197
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=21.56 E-value=1e+02 Score=21.23 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcC
Q 048618 185 VFPVLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~rr 207 (207)
...++.++..++.++.++.||+|
T Consensus 55 ~l~il~~l~~~lal~aIFlyKnR 77 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFLYKNR 77 (149)
T ss_pred HHHHHHHHHHHHHHHHHHccccH
Confidence 44555556666667777777776
No 198
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.45 E-value=1.1e+02 Score=22.40 Aligned_cols=24 Identities=8% Similarity=0.006 Sum_probs=13.4
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFIL 204 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
+...+++.++.++++++++..++|
T Consensus 52 ~~~~l~w~~I~FliL~~lL~k~~~ 75 (204)
T PRK09174 52 YASQLLWLAITFGLFYLFMSRVIL 75 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666555545544
No 199
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.36 E-value=1e+02 Score=24.75 Aligned_cols=22 Identities=9% Similarity=0.498 Sum_probs=10.7
Q ss_pred EeehHHHHHHHHHHHHHHHHhh
Q 048618 182 FAIVFPVLGAVFVSMALIAIFI 203 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ 203 (207)
..|+++++++++++++.+++|+
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYL 331 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYL 331 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444554
No 200
>PTZ00046 rifin; Provisional
Probab=21.33 E-value=1e+02 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=10.7
Q ss_pred EeehHHHHHHHHHHHHHHHHhh
Q 048618 182 FAIVFPVLGAVFVSMALIAIFI 203 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ 203 (207)
..|+++++++++++++.+++|+
T Consensus 315 taIiaSiiAIvVIVLIMvIIYL 336 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444445554
No 201
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.98 E-value=81 Score=23.93 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=3.8
Q ss_pred HHHHHHhhhh
Q 048618 196 MALIAIFILR 205 (207)
Q Consensus 196 ~~~~~~~~~~ 205 (207)
++++.+|+.|
T Consensus 282 ~~~~~~~~~k 291 (292)
T PF01544_consen 282 VAILLYWWFK 291 (292)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHhee
Confidence 3333334333
No 202
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=20.59 E-value=1.6e+02 Score=16.53 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=9.8
Q ss_pred eEeehHHHHHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVSMALI 199 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~ 199 (207)
+..++.+++..++++..++
T Consensus 31 ~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 31 VHFIIVGIILAALFVAGLV 49 (56)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5555555555554444443
Done!