Query 048618
Match_columns 207
No_of_seqs 186 out of 2224
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1.1E-24 3.7E-29 185.9 15.0 121 48-170 631-751 (768)
2 3m19_A Variable lymphocyte rec 99.9 2.1E-23 7.3E-28 155.8 17.2 158 2-159 36-194 (251)
3 2v9t_B SLIT homolog 2 protein 99.9 1.1E-24 3.7E-29 159.8 9.4 139 1-139 32-170 (220)
4 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-24 1.8E-28 163.9 11.6 160 2-162 126-309 (313)
5 2v70_A SLIT-2, SLIT homolog 2 99.9 4.5E-24 1.6E-28 156.5 9.0 139 2-140 33-172 (220)
6 2o6q_A Variable lymphocyte rec 99.9 2.3E-22 8E-27 151.7 17.4 159 2-160 62-221 (270)
7 3e6j_A Variable lymphocyte rec 99.9 1.8E-22 6.1E-27 148.8 14.8 139 1-140 40-178 (229)
8 3rfs_A Internalin B, repeat mo 99.9 7.6E-22 2.6E-26 149.0 17.3 158 1-160 63-221 (272)
9 3m19_A Variable lymphocyte rec 99.9 4.9E-22 1.7E-26 148.4 15.5 139 1-139 59-197 (251)
10 2o6s_A Variable lymphocyte rec 99.9 8.6E-22 2.9E-26 143.0 15.5 139 2-140 29-167 (208)
11 1w8a_A SLIT protein; signaling 99.9 9.7E-23 3.3E-27 146.3 9.9 159 4-165 11-170 (192)
12 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-22 1.2E-26 151.8 13.3 135 2-136 57-192 (285)
13 3rfs_A Internalin B, repeat mo 99.9 8.8E-22 3E-26 148.7 15.4 140 1-140 85-224 (272)
14 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.5E-26 149.0 15.7 138 22-160 74-211 (290)
15 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-23 2.6E-27 155.4 8.6 161 1-161 80-242 (285)
16 2v9t_B SLIT homolog 2 protein 99.9 1.3E-21 4.6E-26 143.3 14.2 154 4-160 14-168 (220)
17 2o6q_A Variable lymphocyte rec 99.9 7.9E-21 2.7E-25 143.3 18.4 156 2-157 38-194 (270)
18 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-22 8.1E-27 154.7 9.6 154 2-155 77-255 (313)
19 2v70_A SLIT-2, SLIT homolog 2 99.9 6.6E-21 2.2E-25 139.6 14.8 155 4-161 14-170 (220)
20 2z66_A Variable lymphocyte rec 99.9 2.9E-21 9.9E-26 148.0 12.8 160 1-160 101-264 (306)
21 2xot_A Amphoterin-induced prot 99.9 1.1E-21 3.7E-26 153.9 10.7 159 2-160 40-205 (361)
22 2wfh_A SLIT homolog 2 protein 99.9 1.2E-21 4E-26 140.8 9.9 133 4-140 13-145 (193)
23 3v47_A TOLL-like receptor 5B a 99.9 3.5E-21 1.2E-25 155.0 13.5 140 2-141 276-415 (455)
24 3e6j_A Variable lymphocyte rec 99.9 2.1E-20 7.1E-25 137.8 16.5 153 4-160 22-175 (229)
25 2z66_A Variable lymphocyte rec 99.9 6.2E-22 2.1E-26 151.8 8.4 164 1-164 126-294 (306)
26 3rgz_A Protein brassinosteroid 99.9 6.2E-21 2.1E-25 162.8 13.4 157 2-158 395-552 (768)
27 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.8E-25 146.3 13.3 148 2-153 105-262 (328)
28 3vq2_A TLR4, TOLL-like recepto 99.8 6.7E-21 2.3E-25 158.5 12.8 161 1-161 399-562 (606)
29 4g8a_A TOLL-like receptor 4; l 99.8 7.8E-21 2.7E-25 158.3 13.0 138 2-139 53-191 (635)
30 3v47_A TOLL-like receptor 5B a 99.8 4.3E-21 1.5E-25 154.5 11.0 137 25-161 275-412 (455)
31 1p9a_G Platelet glycoprotein I 99.8 2.7E-20 9.2E-25 141.8 14.7 136 1-138 77-212 (290)
32 3zyi_A Leucine-rich repeat-con 99.8 2.6E-20 8.7E-25 150.1 14.9 86 75-160 220-306 (452)
33 2z62_A TOLL-like receptor 4, v 99.8 3.2E-20 1.1E-24 140.3 14.5 160 2-161 53-241 (276)
34 3zyj_A Leucine-rich repeat-con 99.8 2.2E-20 7.5E-25 150.0 14.4 86 75-160 209-295 (440)
35 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.6E-25 145.0 12.2 153 2-157 128-290 (328)
36 2z62_A TOLL-like receptor 4, v 99.8 4.8E-20 1.7E-24 139.3 13.7 137 2-138 29-166 (276)
37 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-20 4E-25 157.3 11.3 165 2-166 446-615 (635)
38 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 129.5 17.0 154 4-160 10-164 (208)
39 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-20 9.3E-25 154.8 13.0 162 1-163 424-590 (606)
40 2ell_A Acidic leucine-rich nuc 99.8 4.2E-20 1.4E-24 129.7 12.0 134 1-136 24-162 (168)
41 2je0_A Acidic leucine-rich nuc 99.8 5.9E-20 2E-24 126.4 11.9 127 2-130 18-149 (149)
42 3zyi_A Leucine-rich repeat-con 99.8 9.1E-20 3.1E-24 146.9 14.4 151 2-153 76-227 (452)
43 2id5_A Lingo-1, leucine rich r 99.8 3.7E-20 1.3E-24 150.0 11.3 135 2-136 33-167 (477)
44 2z7x_B TOLL-like receptor 1, v 99.8 1.9E-19 6.4E-24 147.3 15.0 157 1-160 324-484 (520)
45 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 144.4 14.9 152 2-154 65-217 (440)
46 2o6r_A Variable lymphocyte rec 99.8 2.3E-19 7.8E-24 127.0 13.4 135 3-140 9-143 (177)
47 2xot_A Amphoterin-induced prot 99.8 2.5E-20 8.5E-25 146.1 9.1 138 1-138 64-206 (361)
48 2id5_A Lingo-1, leucine rich r 99.8 9.8E-20 3.3E-24 147.5 12.6 154 1-154 56-210 (477)
49 1wwl_A Monocyte differentiatio 99.8 5.8E-20 2E-24 141.3 10.7 156 1-157 95-266 (312)
50 3t6q_A CD180 antigen; protein- 99.8 9.5E-20 3.2E-24 151.6 12.4 158 2-160 401-563 (606)
51 1ziw_A TOLL-like receptor 3; i 99.8 2.4E-19 8.3E-24 151.0 14.1 160 2-161 455-626 (680)
52 2z80_A TOLL-like receptor 2, v 99.8 5.2E-20 1.8E-24 143.8 9.2 153 2-154 53-208 (353)
53 4ezg_A Putative uncharacterize 99.8 4.1E-19 1.4E-23 127.8 13.2 147 2-155 45-192 (197)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-19 1.3E-23 146.8 14.7 157 1-160 353-513 (562)
55 3o6n_A APL1; leucine-rich repe 99.8 8.5E-19 2.9E-23 138.6 15.9 107 2-108 70-176 (390)
56 3t6q_A CD180 antigen; protein- 99.8 1.6E-19 5.4E-24 150.2 12.1 154 2-155 34-190 (606)
57 3oja_B Anopheles plasmodium-re 99.8 8.7E-19 3E-23 145.8 16.3 85 2-86 100-184 (597)
58 2xwt_C Thyrotropin receptor; s 99.8 5.4E-20 1.9E-24 136.2 7.4 152 2-155 32-190 (239)
59 2z63_A TOLL-like receptor 4, v 99.8 1.5E-19 5.2E-24 149.2 10.6 158 2-160 374-534 (570)
60 3o6n_A APL1; leucine-rich repe 99.8 3.8E-19 1.3E-23 140.6 12.1 136 1-136 45-180 (390)
61 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-19 1.2E-23 149.9 12.6 155 1-155 25-182 (680)
62 1wwl_A Monocyte differentiatio 99.8 2.9E-19 9.7E-24 137.4 10.9 153 1-156 121-286 (312)
63 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4.1E-24 156.3 9.7 68 93-160 476-563 (844)
64 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-19 4.5E-24 149.0 9.1 140 1-140 26-167 (549)
65 4eco_A Uncharacterized protein 99.8 1.5E-19 5E-24 151.4 9.5 154 2-157 207-390 (636)
66 2z63_A TOLL-like receptor 4, v 99.8 4.4E-19 1.5E-23 146.4 12.2 138 2-139 29-167 (570)
67 4eco_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 152.1 8.2 152 1-156 249-414 (636)
68 3oja_B Anopheles plasmodium-re 99.8 8.9E-19 3.1E-23 145.7 12.6 134 2-135 52-185 (597)
69 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.9E-23 125.0 12.1 129 1-135 66-195 (197)
70 1xku_A Decorin; proteoglycan, 99.8 5.8E-18 2E-22 131.0 16.3 130 2-134 53-184 (330)
71 3j0a_A TOLL-like receptor 5; m 99.8 8.4E-19 2.9E-23 151.1 12.7 156 1-156 24-186 (844)
72 1xku_A Decorin; proteoglycan, 99.8 2.7E-18 9.2E-23 132.9 13.8 150 3-155 123-274 (330)
73 2z80_A TOLL-like receptor 2, v 99.8 2.5E-19 8.6E-24 139.9 8.0 159 2-160 101-317 (353)
74 2ft3_A Biglycan; proteoglycan, 99.8 3.6E-18 1.2E-22 132.3 14.4 135 2-137 124-280 (332)
75 3oja_A Leucine-rich immune mol 99.8 6.1E-19 2.1E-23 143.3 10.2 153 2-160 100-253 (487)
76 1w8a_A SLIT protein; signaling 99.8 6.7E-19 2.3E-23 126.3 9.2 156 2-161 30-187 (192)
77 4glp_A Monocyte differentiatio 99.8 1.3E-18 4.4E-23 133.7 11.2 153 2-157 118-285 (310)
78 2xwt_C Thyrotropin receptor; s 99.8 9.6E-19 3.3E-23 129.5 9.9 154 1-157 55-218 (239)
79 4ecn_A Leucine-rich repeat pro 99.8 1.2E-18 4.1E-23 149.6 11.2 154 1-157 448-632 (876)
80 1h6t_A Internalin B; cell adhe 99.8 8.7E-18 3E-22 128.0 14.5 144 2-156 69-212 (291)
81 1h6u_A Internalin H; cell adhe 99.8 1.7E-17 5.9E-22 127.3 16.3 83 69-156 147-229 (308)
82 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-17 3.7E-22 129.6 15.3 130 2-135 55-186 (332)
83 1h6u_A Internalin H; cell adhe 99.8 1.2E-17 4E-22 128.2 15.3 146 1-157 63-208 (308)
84 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-18 6E-23 133.3 10.6 152 2-159 100-252 (317)
85 1xeu_A Internalin C; cellular 99.8 1.1E-17 3.9E-22 125.6 14.4 147 1-159 41-187 (263)
86 4ecn_A Leucine-rich repeat pro 99.8 1.4E-18 4.9E-23 149.2 10.1 139 17-157 440-608 (876)
87 4fmz_A Internalin; leucine ric 99.8 1.7E-17 6E-22 129.0 14.7 127 21-154 217-343 (347)
88 3oja_A Leucine-rich immune mol 99.8 1.9E-18 6.5E-23 140.4 9.5 131 2-134 35-182 (487)
89 4glp_A Monocyte differentiatio 99.8 2.8E-18 9.6E-23 131.7 9.7 156 1-157 91-264 (310)
90 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 123.8 15.5 145 2-157 47-191 (291)
91 2wfh_A SLIT homolog 2 protein 99.7 1.1E-17 3.9E-22 119.9 11.2 110 1-111 31-140 (193)
92 2o6r_A Variable lymphocyte rec 99.7 2E-17 6.7E-22 117.0 12.1 114 1-114 28-141 (177)
93 1a9n_A U2A', U2A'; complex (nu 99.7 9E-18 3.1E-22 118.7 9.8 127 2-134 20-153 (176)
94 1m9s_A Internalin B; cell inva 99.7 3.7E-17 1.3E-21 135.8 14.9 143 2-155 66-208 (605)
95 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-17 5E-22 136.1 12.1 151 3-157 304-457 (520)
96 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-17 3.7E-22 128.9 10.5 132 1-136 120-252 (317)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.3E-17 8E-22 136.2 12.5 134 22-157 350-486 (562)
98 4fmz_A Internalin; leucine ric 99.7 8.5E-17 2.9E-21 125.1 14.8 126 1-134 221-346 (347)
99 2z81_A CD282 antigen, TOLL-lik 99.7 2.2E-18 7.4E-23 141.8 6.0 133 1-133 50-184 (549)
100 1o6v_A Internalin A; bacterial 99.7 1.4E-16 4.7E-21 128.8 15.5 145 2-157 244-388 (466)
101 2je0_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 112.1 10.3 114 23-138 15-130 (149)
102 2ell_A Acidic leucine-rich nuc 99.7 4E-17 1.4E-21 114.4 10.3 132 23-156 22-159 (168)
103 3g39_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 113.5 10.9 111 27-140 11-121 (170)
104 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.1E-21 119.0 12.4 125 1-136 63-187 (263)
105 3g39_A Variable lymphocyte rec 99.7 2.1E-16 7E-21 111.1 11.9 108 3-113 11-118 (170)
106 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 130.3 14.7 145 1-156 43-187 (605)
107 1o6v_A Internalin A; bacterial 99.7 6.2E-16 2.1E-20 125.0 16.1 144 2-156 222-365 (466)
108 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.6E-22 129.0 6.2 131 2-132 94-233 (336)
109 2r9u_A Variable lymphocyte rec 99.7 2.3E-16 7.9E-21 111.2 11.1 111 27-140 14-124 (174)
110 1dce_A Protein (RAB geranylger 99.7 3.3E-16 1.1E-20 129.3 13.3 107 27-138 443-550 (567)
111 4b8c_D Glucose-repressible alc 99.7 6E-17 2E-21 137.3 9.0 119 16-138 215-333 (727)
112 2ast_B S-phase kinase-associat 99.7 9.8E-17 3.4E-21 124.2 8.5 154 1-154 118-282 (336)
113 2r9u_A Variable lymphocyte rec 99.7 6E-16 2E-20 109.1 11.7 106 4-112 15-120 (174)
114 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.4E-22 140.9 3.4 114 1-118 224-337 (727)
115 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-16 1.9E-20 109.4 8.9 131 19-154 13-150 (176)
116 3goz_A Leucine-rich repeat-con 99.6 7.6E-17 2.6E-21 126.3 4.6 133 2-134 23-180 (362)
117 3bz5_A Internalin-J, INLJ; leu 99.6 8.8E-15 3E-19 118.0 15.8 118 1-132 42-159 (457)
118 2ca6_A RAN GTPase-activating p 99.6 8E-17 2.8E-21 127.2 3.7 132 2-133 61-228 (386)
119 1ds9_A Outer arm dynein; leuci 99.6 1.6E-18 5.6E-23 124.8 -6.0 133 2-139 19-158 (198)
120 2ca6_A RAN GTPase-activating p 99.6 3.8E-16 1.3E-20 123.3 6.4 136 2-137 160-319 (386)
121 3cvr_A Invasion plasmid antige 99.6 4.9E-15 1.7E-19 122.1 12.5 32 124-155 210-241 (571)
122 3goz_A Leucine-rich repeat-con 99.6 2.4E-16 8.1E-21 123.5 4.4 155 2-156 52-237 (362)
123 1dce_A Protein (RAB geranylger 99.6 1.1E-14 3.6E-19 120.3 13.5 122 2-128 442-567 (567)
124 2ifg_A High affinity nerve gro 99.6 3.2E-15 1.1E-19 116.4 9.6 102 6-110 13-116 (347)
125 3bz5_A Internalin-J, INLJ; leu 99.6 3E-14 1E-18 114.9 15.4 122 2-135 86-226 (457)
126 4ay9_X Follicle-stimulating ho 99.6 2.1E-15 7.3E-20 117.6 8.2 156 1-157 30-215 (350)
127 2ifg_A High affinity nerve gro 99.6 3.4E-15 1.2E-19 116.2 7.4 109 28-139 11-121 (347)
128 1z7x_W Ribonuclease inhibitor; 99.6 6.7E-16 2.3E-20 124.3 3.0 156 1-156 227-410 (461)
129 1ds9_A Outer arm dynein; leuci 99.6 6.5E-17 2.2E-21 116.4 -3.1 128 1-135 48-186 (198)
130 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.6E-19 119.5 10.1 122 2-140 121-249 (571)
131 1jl5_A Outer protein YOPM; leu 99.5 1.3E-13 4.3E-18 111.1 14.3 120 2-135 132-251 (454)
132 1z7x_W Ribonuclease inhibitor; 99.5 3.3E-15 1.1E-19 120.2 2.4 155 2-156 200-382 (461)
133 1jl5_A Outer protein YOPM; leu 99.5 3.7E-13 1.3E-17 108.4 14.2 117 26-155 132-248 (454)
134 3g06_A SSPH2 (leucine-rich rep 99.5 2.1E-13 7.1E-18 113.6 11.9 38 97-135 261-298 (622)
135 3g06_A SSPH2 (leucine-rich rep 99.5 8.9E-13 3.1E-17 109.8 13.8 77 73-157 221-297 (622)
136 3un9_A NLR family member X1; l 99.4 3.3E-14 1.1E-18 111.7 3.2 154 2-155 73-250 (372)
137 4ay9_X Follicle-stimulating ho 99.4 4E-13 1.4E-17 104.7 7.3 137 1-138 54-219 (350)
138 3un9_A NLR family member X1; l 99.4 2E-14 6.8E-19 113.0 -0.2 135 2-136 102-254 (372)
139 3sb4_A Hypothetical leucine ri 99.4 1.3E-12 4.5E-17 100.9 9.0 70 1-71 49-146 (329)
140 3sb4_A Hypothetical leucine ri 99.4 3.4E-12 1.1E-16 98.6 9.8 54 1-55 101-154 (329)
141 3ogk_B Coronatine-insensitive 99.2 4.5E-12 1.6E-16 105.0 2.7 134 2-135 379-527 (592)
142 3ogk_B Coronatine-insensitive 99.1 8.4E-11 2.9E-15 97.4 5.1 82 23-105 162-251 (592)
143 1io0_A Tropomodulin; LRR prote 99.1 1.9E-10 6.5E-15 81.6 5.6 117 18-134 29-164 (185)
144 1io0_A Tropomodulin; LRR prote 99.0 2E-10 7E-15 81.4 4.2 110 1-110 36-164 (185)
145 2p1m_B Transport inhibitor res 99.0 8.8E-11 3E-15 97.2 2.5 132 2-134 373-519 (594)
146 2p1m_B Transport inhibitor res 99.0 6E-11 2.1E-15 98.2 -0.2 133 23-156 370-518 (594)
147 4fdw_A Leucine rich hypothetic 98.9 2E-08 6.7E-13 79.6 12.9 149 2-154 181-355 (401)
148 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.4E-14 84.3 6.0 130 2-134 173-320 (362)
149 4fdw_A Leucine rich hypothetic 98.9 1.3E-08 4.5E-13 80.6 10.0 131 2-136 204-360 (401)
150 3rw6_A Nuclear RNA export fact 98.8 9.4E-10 3.2E-14 82.1 2.1 67 71-138 168-237 (267)
151 3rw6_A Nuclear RNA export fact 98.7 3.1E-08 1E-12 74.0 6.4 106 21-128 137-258 (267)
152 3e4g_A ATP synthase subunit S, 98.6 4.7E-08 1.6E-12 68.2 4.7 82 26-107 62-149 (176)
153 2ra8_A Uncharacterized protein 98.6 2.9E-08 1E-12 77.5 3.8 130 1-132 193-341 (362)
154 3e4g_A ATP synthase subunit S, 98.6 3.7E-08 1.3E-12 68.7 3.8 85 49-133 61-151 (176)
155 1pgv_A TMD-1, tropomodulin TMD 98.2 1.9E-06 6.5E-11 61.2 5.9 113 21-133 37-169 (197)
156 4gt6_A Cell surface protein; l 98.2 7E-06 2.4E-10 64.7 9.7 116 14-133 254-369 (394)
157 4h09_A Hypothetical leucine ri 98.2 6.3E-06 2.2E-10 64.5 9.3 108 19-129 211-318 (379)
158 4gt6_A Cell surface protein; l 98.2 6.5E-06 2.2E-10 64.9 9.0 125 2-133 266-390 (394)
159 1pgv_A TMD-1, tropomodulin TMD 98.2 3.2E-06 1.1E-10 60.0 5.5 110 1-110 41-170 (197)
160 4fs7_A Uncharacterized protein 98.1 1.5E-05 5.2E-10 62.8 8.8 123 2-131 231-353 (394)
161 4h09_A Hypothetical leucine ri 98.1 1.4E-05 4.9E-10 62.5 8.1 126 2-131 218-343 (379)
162 3rfe_A Platelet glycoprotein I 97.9 1.6E-05 5.6E-10 52.7 5.6 61 77-139 12-73 (130)
163 4fs7_A Uncharacterized protein 97.8 0.00028 9.4E-09 55.5 10.7 121 3-130 255-375 (394)
164 3rfe_A Platelet glycoprotein I 97.4 0.00045 1.5E-08 45.6 6.4 34 51-84 33-66 (130)
165 2ks1_B Epidermal growth factor 95.1 0.032 1.1E-06 29.0 3.5 7 184-190 13-19 (44)
166 2k1k_A Ephrin type-A receptor 93.8 0.029 9.9E-07 28.2 1.5 12 196-207 27-38 (38)
167 2jwa_A Receptor tyrosine-prote 93.5 0.042 1.4E-06 28.4 1.9 9 199-207 31-39 (44)
168 2k9y_A Ephrin type-A receptor 92.4 0.11 3.9E-06 26.4 2.6 25 183-207 14-40 (41)
169 2l2t_A Receptor tyrosine-prote 92.0 0.15 5.3E-06 26.3 2.8 8 183-190 11-18 (44)
170 2l2t_A Receptor tyrosine-prote 92.0 0.14 4.7E-06 26.5 2.6 25 181-206 13-37 (44)
171 2jwa_A Receptor tyrosine-prote 88.1 0.53 1.8E-05 24.2 2.8 18 184-202 14-31 (44)
172 1iij_A ERBB-2 receptor protein 86.9 0.18 6.2E-06 24.6 0.6 9 199-207 27-35 (35)
173 2lz0_A Uncharacterized protein 83.9 3.5 0.00012 25.4 5.7 49 10-59 5-53 (100)
174 2l9u_A Receptor tyrosine-prote 79.9 2.1 7.1E-05 20.5 2.7 6 198-203 26-31 (40)
175 1vf5_G Protein PET G; photosyn 75.3 3.2 0.00011 20.2 2.6 26 181-206 6-31 (37)
176 2lz0_A Uncharacterized protein 74.0 5.5 0.00019 24.4 4.3 46 36-82 7-52 (100)
177 2l6w_A Beta-type platelet-deri 73.3 0.88 3E-05 22.6 0.0 15 193-207 21-35 (39)
178 1q90_G Cytochrome B6F complex 67.8 5.9 0.0002 19.2 2.6 24 183-206 8-31 (37)
179 2llm_A Amyloid beta A4 protein 68.6 1.3 4.6E-05 22.4 0.0 20 188-207 24-43 (43)
180 2l34_A TYRO protein tyrosine k 63.1 11 0.00038 17.9 3.1 7 200-206 26-32 (33)
181 1zza_A Stannin, AG8_1; helix, 62.3 8 0.00027 22.0 2.9 26 181-206 14-39 (90)
182 1cd1_A CD1, MCD1D.1; immunolog 59.6 1.9 6.5E-05 32.6 0.0 7 200-206 302-308 (315)
183 2knc_B Integrin beta-3; transm 51.7 11 0.00037 22.1 2.4 10 182-191 11-20 (79)
184 1hgv_A PH75 inovirus major coa 51.3 12 0.00041 18.4 2.1 20 188-207 23-42 (46)
185 2k21_A Potassium voltage-gated 38.3 29 0.00099 22.3 2.9 24 181-204 53-76 (138)
186 1s7q_A H-2KB, H-2 class I hist 35.5 7.9 0.00027 29.7 0.0 6 200-205 304-309 (348)
187 4ev6_A Magnesium transport pro 30.3 29 0.001 26.3 2.4 16 191-206 321-336 (339)
188 2lx0_A Membrane fusion protein 29.4 45 0.0015 14.9 3.0 10 196-205 18-27 (32)
189 1scf_A Stem cell factor; steel 29.4 13 0.00046 26.7 0.3 25 181-206 215-239 (273)
190 2iub_A CORA, divalent cation t 28.9 32 0.0011 26.4 2.5 18 189-206 343-360 (363)
191 2l8s_A Integrin alpha-1; trans 27.9 69 0.0024 17.1 2.9 14 181-194 10-23 (54)
192 2jp3_A FXYD domain-containing 27.0 41 0.0014 18.8 2.0 19 182-200 17-35 (67)
193 2k1a_A Integrin alpha-IIB; sin 26.8 62 0.0021 16.3 2.5 14 181-194 11-24 (42)
194 1waz_A MERF; protein structure 25.5 62 0.0021 16.5 2.3 9 197-205 35-43 (46)
195 1afo_A Glycophorin A; integral 25.2 70 0.0024 15.7 2.9 11 192-202 23-33 (40)
196 2knc_A Integrin alpha-IIB; tra 25.1 82 0.0028 16.8 2.9 15 181-195 13-27 (54)
197 2zxe_G FXYD10, phospholemman-l 25.0 41 0.0014 19.2 1.8 21 181-201 18-38 (74)
198 2yiu_B Cytochrome C1, heme pro 24.9 41 0.0014 24.7 2.2 16 191-206 235-250 (263)
199 2jo1_A Phospholemman; FXYD1, N 23.2 90 0.0031 17.7 2.9 17 183-199 17-33 (72)
200 2k9p_A Pheromone alpha factor 23.0 86 0.0029 18.3 3.0 14 193-206 32-45 (80)
201 1pp9_D Cytochrome C-1, cytochr 22.8 48 0.0016 24.0 2.2 16 191-206 209-224 (241)
202 3cx5_D Cytochrome C1, heme pro 22.8 48 0.0016 24.1 2.2 14 193-206 215-228 (248)
203 2k9j_B Integrin beta-3; transm 22.0 89 0.003 15.7 3.1 10 182-191 10-19 (43)
204 1zrt_D Cytochrome C1; cytochro 21.0 55 0.0019 23.9 2.2 13 193-205 234-246 (258)
205 2qjy_B Cytochrome C1; cytochro 20.0 59 0.002 23.9 2.2 11 195-205 238-248 (269)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.1e-24 Score=185.91 Aligned_cols=121 Identities=31% Similarity=0.519 Sum_probs=109.6
Q ss_pred CCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEE
Q 048618 48 LLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127 (207)
Q Consensus 48 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~ 127 (207)
+++|+.|++++|++++.+|..++.++.|+.|++++|.+++.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 45677888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccCCCCcccCCCCcccccCCCCCCCCCCCCCCCccc
Q 048618 128 ISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVF 170 (207)
Q Consensus 128 l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~ 170 (207)
+++|+++|.+|....+..+....+.+|+.+|+.+.. .|...
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~~ 751 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDPS 751 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCSC
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CCCCC
Confidence 999999999999988999999999999999997643 66543
No 2
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.1e-23 Score=155.77 Aligned_cols=158 Identities=24% Similarity=0.292 Sum_probs=142.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 68899999999998888899999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~ 159 (207)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..+..+..+.+.+|+..|.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999777777888999999999999999777778999999999999999999776643 5667888899999998886
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.91 E-value=1.1e-24 Score=159.78 Aligned_cols=139 Identities=21% Similarity=0.294 Sum_probs=126.0
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++++.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 36889999999999888888999999999999999999888889999999999999999998877777889999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999988888899999999999999999988888899999999999999999887664
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=5.4e-24 Score=163.94 Aligned_cols=160 Identities=26% Similarity=0.399 Sum_probs=117.3
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCc--------------------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQ-------------------- 60 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~-------------------- 60 (207)
+|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence 456666666666656666666666666666666666555555555554 55555555554
Q ss_pred ---CCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618 61 ---FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137 (207)
Q Consensus 61 ---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 137 (207)
+.+..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 4444555666677777777777777655444 667788899999999998888999999999999999999999999
Q ss_pred CCCcccCCCCcccccCCCCCCCCCC
Q 048618 138 PNSTAFRNAPVEALEGNKELCGGVK 162 (207)
Q Consensus 138 ~~~~~~~~~~~~~~~~n~~~c~~~~ 162 (207)
|....++.+..+.+.+|+.+|+.+.
T Consensus 285 p~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 285 PQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred CCCccccccChHHhcCCCCccCCCC
Confidence 9888888999999999999998654
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=156.47 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=118.8
Q ss_pred CccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
.++.|++++|.+++..+ ..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 46788999999887644 45788899999999999988777778888999999999999998888888888999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|+++|.++..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999998877888888889999999999998777888888899999999999998877643
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.3e-22 Score=151.67 Aligned_cols=159 Identities=23% Similarity=0.273 Sum_probs=93.1
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 34555555555554434444555555555555555554444445555555555555555555555555566666666666
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..++.+..+.+.+|+..|+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 66665544444566666666666666666555555666677777777777766544432 34566667777777776664
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=1.8e-22 Score=148.84 Aligned_cols=139 Identities=26% Similarity=0.281 Sum_probs=124.3
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..|..|.++++|++|+|++|.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 46899999999999888999999999999999999998777777899999999999999998887888889999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 999998 66777888999999999999999777778889999999999999999887643
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.6e-22 Score=149.04 Aligned_cols=158 Identities=24% Similarity=0.283 Sum_probs=125.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++. +.+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4678888888888753 46788888888888888888777777788888888888888888777777888888888888
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~ 159 (207)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.. ..++.+..+++.+|+..|.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 888888766666778888888888888888777777788888888888888888766654 5667788888888877765
Q ss_pred C
Q 048618 160 G 160 (207)
Q Consensus 160 ~ 160 (207)
.
T Consensus 221 ~ 221 (272)
T 3rfs_A 221 C 221 (272)
T ss_dssp T
T ss_pred C
Confidence 4
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.9e-22 Score=148.36 Aligned_cols=139 Identities=26% Similarity=0.268 Sum_probs=128.9
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 47899999999999988889999999999999999999888888999999999999999999888888899999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++|....
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99999987777899999999999999999988888899999999999999999987443
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=8.6e-22 Score=143.00 Aligned_cols=139 Identities=27% Similarity=0.286 Sum_probs=123.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 68899999999997777788999999999999999997777778899999999999999988777778899999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 167 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCH
Confidence 99998777777888999999999999999777777889999999999999998887754
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.88 E-value=9.7e-23 Score=146.34 Aligned_cols=159 Identities=23% Similarity=0.311 Sum_probs=133.0
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcch-hhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
+.+++++|.++ .+|..+.. ++++|++++|.+.+..+. .|..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67999999997 67776644 999999999999876664 489999999999999999998899999999999999999
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCCC
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVK 162 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 162 (207)
|++++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|+++|.++.......+......++...|..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99998888889999999999999999998889999999999999999999999877543222222233445566677665
Q ss_pred CCC
Q 048618 163 GMQ 165 (207)
Q Consensus 163 ~~~ 165 (207)
...
T Consensus 168 ~l~ 170 (192)
T 1w8a_A 168 KVR 170 (192)
T ss_dssp TTT
T ss_pred HHc
Confidence 443
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=3.4e-22 Score=151.80 Aligned_cols=135 Identities=27% Similarity=0.293 Sum_probs=70.8
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+|+.|++++|.+++..|..+.++++|++|++++|. +....+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 45556666666555555555555666666665554 44444555555555555555555555544555555555555555
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 55555544444444455555555555555433333444444444444444444443
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=8.8e-22 Score=148.68 Aligned_cols=140 Identities=29% Similarity=0.348 Sum_probs=130.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 47899999999999888888999999999999999999888888999999999999999999888888899999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.+|..
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 999999887777889999999999999999888888999999999999999999988864
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=149.04 Aligned_cols=138 Identities=29% Similarity=0.300 Sum_probs=97.7
Q ss_pred CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618 22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101 (207)
Q Consensus 22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 101 (207)
..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 34445555555555554 44555667777777777777777666677777788888888888877666666777778888
Q ss_pred EeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCC
Q 048618 102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 102 L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 160 (207)
|++++|.+++..+..+..+++|+.|++++|+++...+.......+..+.+.+|+..|.+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 88888888766666677778888888888888755555555666777778888887753
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=7.6e-23 Score=155.39 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=138.7
Q ss_pred CCccEEECCCCC-CcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQ-LTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++|+.|++++|. +....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 468999999997 8877788899999999999999999988888899999999999999999877777788899999999
Q ss_pred cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCCCC
Q 048618 80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKELC 158 (207)
Q Consensus 80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~~c 158 (207)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+. ...++.+..+++.+|+..|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999876666788899999999999999888888899999999999999999875544 2566778888889998888
Q ss_pred CCC
Q 048618 159 GGV 161 (207)
Q Consensus 159 ~~~ 161 (207)
+..
T Consensus 240 ~~~ 242 (285)
T 1ozn_A 240 DCR 242 (285)
T ss_dssp SGG
T ss_pred CCC
Confidence 653
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=1.3e-21 Score=143.30 Aligned_cols=154 Identities=25% Similarity=0.336 Sum_probs=138.3
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.++.+++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|+.|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46889999998 5676554 78999999999999877778999999999999999999888999999999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..+..+..+.+.+|+..|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 999777777889999999999999999888999999999999999999999877754 55788889999999998864
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=7.9e-21 Score=143.29 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=139.3
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.++...+..|.++++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 68999999999998777899999999999999999997777778899999999999999998888888999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKEL 157 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~ 157 (207)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..+..+..+++.+|...
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 99999888888899999999999999999777778899999999999999998776653 45678888888887544
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.4e-22 Score=154.74 Aligned_cols=154 Identities=22% Similarity=0.352 Sum_probs=80.5
Q ss_pred CccEEECCC-CCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRG-NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+|+.|++++ |.+.+.+|..+.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 455555553 5555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCchhHHhhcCC-CCCEEeCCCCcCC-----------------------CCccccccCCCCCCEEECCCCcCccc
Q 048618 81 SHNFLGGELLSQICNME-SLEKLNLSHNNLS-----------------------GSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
++|.+++..|..+..+. .|+.|++++|.++ +..+..+..+++|+.|++++|.+++.
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 55555544444444444 4555555555444 44444445555555555555555544
Q ss_pred CCCCcccCCCCcccccCCC
Q 048618 137 VPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~~~n~ 155 (207)
.+.....+.+..+++.+|.
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp GGGCCCCTTCCEEECCSSC
T ss_pred cCcccccCCCCEEECcCCc
Confidence 4443344444455554443
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=6.6e-21 Score=139.61 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=137.3
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57899999998 4676553 457899999999997644 4588999999999999999988888999999999999999
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGGV 161 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~~ 161 (207)
|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|.. ..+..+..+++.+|+..|...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999888888999999999999999999888999999999999999999999886655 567888899999999988753
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.9e-21 Score=148.05 Aligned_cols=160 Identities=25% Similarity=0.293 Sum_probs=123.0
Q ss_pred CCccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618 1 NSLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL 78 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 78 (207)
++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+ ..|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 356777777777775544 567778888888888888777777777788888888888888765 467777888888888
Q ss_pred ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-ccc-CCCCcccccCCCC
Q 048618 79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAF-RNAPVEALEGNKE 156 (207)
Q Consensus 79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~-~~~~~~~~~~n~~ 156 (207)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.. ..+ ..+..+++.+|+.
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 88888888776777888888888888888888766667788888888888888888766654 333 4677788888887
Q ss_pred CCCC
Q 048618 157 LCGG 160 (207)
Q Consensus 157 ~c~~ 160 (207)
.|..
T Consensus 261 ~~~c 264 (306)
T 2z66_A 261 ACTC 264 (306)
T ss_dssp ECSG
T ss_pred eccc
Confidence 7764
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=1.1e-21 Score=153.88 Aligned_cols=159 Identities=23% Similarity=0.174 Sum_probs=131.9
Q ss_pred CccEEECCCCCCcccCCcccC-CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
.++.|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|..+++|+.|++++|++....+..|..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 578999999999988888887 9999999999999999887888999999999999999998888888999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccc---cCCCCCCEEECCCCcCcccCCCC-cccCC--CCcccccCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF---EGMHGLSVIDISDNQLQGPVPNS-TAFRN--APVEALEGN 154 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~-~~~~~--~~~~~~~~n 154 (207)
++|.+++..+..+..+++|+.|+|++|.++...+..+ ..+++|+.|++++|+++...+.. ..++. +..+.+.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 9999998888889999999999999999997655666 56899999999999998543221 11221 245677788
Q ss_pred CCCCCC
Q 048618 155 KELCGG 160 (207)
Q Consensus 155 ~~~c~~ 160 (207)
+..|++
T Consensus 200 ~~~C~C 205 (361)
T 2xot_A 200 PLECDC 205 (361)
T ss_dssp CEECCH
T ss_pred CccCCc
Confidence 877763
No 22
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=140.79 Aligned_cols=133 Identities=28% Similarity=0.305 Sum_probs=120.5
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.+++++|.++ .+|..+. +++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56899999998 5676553 68999999999998 67789999999999999999999988889999999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
.+++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++.|.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999888888999999999999999999777778999999999999999999887643
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3.5e-21 Score=155.01 Aligned_cols=140 Identities=24% Similarity=0.260 Sum_probs=127.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 68899999999998889999999999999999999998888889999999999999999988888889999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST 141 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 141 (207)
+|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++|.+|...
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 999988878889999999999999999997777788899999999999999999998653
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2.1e-20 Score=137.76 Aligned_cols=153 Identities=24% Similarity=0.275 Sum_probs=136.2
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 56888999988 5666554 89999999999999988999999999999999999998777788899999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++...+.. ..++.+..+.+.+|+..|..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999877777889999999999999999 67888899999999999999999766543 56788899999999998875
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=6.2e-22 Score=151.78 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=141.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC-CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++|+.|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 478999999999999999999999999999999999986 5788899999999999999999988899999999999999
Q ss_pred cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCC-CCCEEECCCCcCcccCCCC---cccCCCCcccccCCC
Q 048618 80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH-GLSVIDISDNQLQGPVPNS---TAFRNAPVEALEGNK 155 (207)
Q Consensus 80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~---~~~~~~~~~~~~~n~ 155 (207)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|+.+++++|+++|.++.. .+++.........+.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 999999987777888999999999999999988888898885 8999999999999887653 334444444455666
Q ss_pred CCCCCCCCC
Q 048618 156 ELCGGVKGM 164 (207)
Q Consensus 156 ~~c~~~~~~ 164 (207)
..|..+...
T Consensus 286 ~~C~~p~~~ 294 (306)
T 2z66_A 286 MECATPSDK 294 (306)
T ss_dssp CBEEESGGG
T ss_pred cccCCchhh
Confidence 677665543
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=6.2e-21 Score=162.83 Aligned_cols=157 Identities=34% Similarity=0.478 Sum_probs=122.8
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 46777777777777777778888888888888888877777788888888888888888877778778888888888888
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELC 158 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c 158 (207)
+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..++.+..+++.+|...+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 88887777777788888888888888888777888888888888888888887776654 556667777777776544
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.1e-20 Score=146.33 Aligned_cols=148 Identities=25% Similarity=0.353 Sum_probs=76.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhC---------C
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEK---------L 72 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l 72 (207)
+|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|..+.. +
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 4666666666666 56666666666666666666666 55556666666666666665554444443322 4
Q ss_pred CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccc
Q 048618 73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEAL 151 (207)
Q Consensus 73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~ 151 (207)
++|++|++++|.++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+..|.. ..+..+..+++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 44555555555444 334444444444444444444442 2333444444444444444444443332 23333334443
Q ss_pred cC
Q 048618 152 EG 153 (207)
Q Consensus 152 ~~ 153 (207)
.+
T Consensus 261 ~~ 262 (328)
T 4fcg_A 261 KD 262 (328)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=6.7e-21 Score=158.47 Aligned_cols=161 Identities=24% Similarity=0.234 Sum_probs=131.4
Q ss_pred CCccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618 1 NSLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL 78 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 78 (207)
++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+..+++|+.|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 367788888888877666 577888888888888888887778888888888888888888876 367778888899999
Q ss_pred ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccC-CCCcccccCCCCC
Q 048618 79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFR-NAPVEALEGNKEL 157 (207)
Q Consensus 79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~~~~~~~~n~~~ 157 (207)
++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++...+....+. .+..+++.+|+..
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 999998887778888888999999999999988888888888999999999999885544444444 4788888899988
Q ss_pred CCCC
Q 048618 158 CGGV 161 (207)
Q Consensus 158 c~~~ 161 (207)
|++.
T Consensus 559 c~c~ 562 (606)
T 3vq2_A 559 CICE 562 (606)
T ss_dssp CSST
T ss_pred cCCc
Confidence 8654
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=7.8e-21 Score=158.33 Aligned_cols=138 Identities=26% Similarity=0.257 Sum_probs=126.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
++++|+|++|.|+.+.+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++.+..++.|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68999999999998888899999999999999999998888899999999999999999998888889999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+|++++..+..++.+++|+.|++++|.+++. .|..+..+++|+.|++++|++++..+.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9999987777899999999999999999864 578889999999999999999876554
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=4.3e-21 Score=154.48 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=126.2
Q ss_pred CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeC
Q 048618 25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL 104 (207)
Q Consensus 25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 104 (207)
++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999888999999999999999999999888999999999999999999999888889999999999999
Q ss_pred CCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618 105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGGV 161 (207)
Q Consensus 105 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~~ 161 (207)
++|.+++..|..+..+++|+.|++++|+++...+.. ..++.+..+++.+|+..|..+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999888999999999999999999999766654 567889999999999998865
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.7e-20 Score=141.81 Aligned_cols=136 Identities=29% Similarity=0.291 Sum_probs=124.1
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 46889999999998 67888999999999999999999888889999999999999999999888888999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
++|++++..+..+..+++|+.|++++|.++ .+|..+....+|+.+++++|++.|.+.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999777777888999999999999999 667777788899999999999998764
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.6e-20 Score=150.13 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=53.7
Q ss_pred CCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccC
Q 048618 75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEG 153 (207)
Q Consensus 75 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~ 153 (207)
|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..++.+..+++.+
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 333333444444344555555666666666666666555666666777777777777777555443 4466777888888
Q ss_pred CCCCCCC
Q 048618 154 NKELCGG 160 (207)
Q Consensus 154 n~~~c~~ 160 (207)
|+..|++
T Consensus 300 Np~~CdC 306 (452)
T 3zyi_A 300 NPWNCDC 306 (452)
T ss_dssp SCEECST
T ss_pred CCcCCCC
Confidence 8888765
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.2e-20 Score=140.30 Aligned_cols=160 Identities=20% Similarity=0.187 Sum_probs=107.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 56777777777776666677777777777777777776666667777777777777777766555556667777777777
Q ss_pred CCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCccccccCC---------------------------CCCCEEECCCCcC
Q 048618 82 HNFLGGE-LLSQICNMESLEKLNLSHNNLSGSIPNCFEGM---------------------------HGLSVIDISDNQL 133 (207)
Q Consensus 82 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------------~~L~~l~l~~n~~ 133 (207)
+|.+++. .|..+..+++|+.|++++|.+++..+..+..+ .+|+.|++++|.+
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCce
Confidence 7776653 35666666777777777776664433333222 2566777777777
Q ss_pred cccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618 134 QGPVPNS-TAFRNAPVEALEGNKELCGGV 161 (207)
Q Consensus 134 ~~~~~~~-~~~~~~~~~~~~~n~~~c~~~ 161 (207)
+...+.. ..+..+..+++.+|+..|+.+
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCHhHhcccccccEEEccCCcccccCC
Confidence 6555443 456677777888888887753
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=150.02 Aligned_cols=86 Identities=24% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccC
Q 048618 75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEG 153 (207)
Q Consensus 75 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~ 153 (207)
|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..+..+..+++.+
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 333333344444334445555555666666666665555566667777777777777777655544 4567778888889
Q ss_pred CCCCCCC
Q 048618 154 NKELCGG 160 (207)
Q Consensus 154 n~~~c~~ 160 (207)
|+..|++
T Consensus 289 Np~~CdC 295 (440)
T 3zyj_A 289 NPWNCNC 295 (440)
T ss_dssp SCEECSS
T ss_pred CCccCCC
Confidence 9888865
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.9e-20 Score=144.95 Aligned_cols=153 Identities=26% Similarity=0.328 Sum_probs=105.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcC---------CCCCCeeeccCCcCCCccchhhhCC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGS---------LLKLHYLSLSNNQFVQELPKELEKL 72 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l 72 (207)
+|+.|++++|.++ .+|..+.++++|++|++++|++.+.+|..+.. +++|+.|++++|.+. .+|..+..+
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l 205 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence 5677777777777 56767777777777777777666666665543 777777777777776 556667777
Q ss_pred CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccc
Q 048618 73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEAL 151 (207)
Q Consensus 73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~ 151 (207)
++|++|++++|.+++ .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. ..++.+..+++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 777777777777764 4445667777777777777777677777777777777777777776666644 45566666666
Q ss_pred cCCCCC
Q 048618 152 EGNKEL 157 (207)
Q Consensus 152 ~~n~~~ 157 (207)
.+|...
T Consensus 285 ~~n~~~ 290 (328)
T 4fcg_A 285 RGCVNL 290 (328)
T ss_dssp TTCTTC
T ss_pred CCCCch
Confidence 666543
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=4.8e-20 Score=139.29 Aligned_cols=137 Identities=26% Similarity=0.258 Sum_probs=125.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 68999999999998888899999999999999999998777789999999999999999998888899999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
+|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|+.|++++|.+++..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999877666788999999999999999874 58899999999999999999986544
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.2e-20 Score=157.25 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=126.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+++.+++++|.+.+..+..+..++.++.|++++|.+. ...|..|..+++|+.|++++|++.+..|..|.++++|++|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 5677888888888888888888888888888888643 356677888888888999888888888888888888889999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCC-CCCCEEECCCCcCcccCCCCc---ccCCCCcccccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM-HGLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNKE 156 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~~ 156 (207)
++|++++..+..+..+++|+.|++++|.+++..|+.+..+ ++|+.|++++|++.|.|.... +++............
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~ 605 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 605 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence 8888887777888888888999998888888888888877 578888999998888876532 222222222223445
Q ss_pred CCCCCCCCCC
Q 048618 157 LCGGVKGMQP 166 (207)
Q Consensus 157 ~c~~~~~~~~ 166 (207)
.|..|....+
T Consensus 606 ~C~~P~~~~g 615 (635)
T 4g8a_A 606 ECATPSDKQG 615 (635)
T ss_dssp BBCSSTTTTT
T ss_pred eeCCchHHCC
Confidence 6776655443
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3e-19 Score=129.52 Aligned_cols=154 Identities=23% Similarity=0.235 Sum_probs=134.0
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.++.+++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46788888887 455544 468999999999999877778899999999999999999877778899999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|+..|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 999777777889999999999999999877788899999999999999999766653 56788899999999888764
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.7e-20 Score=154.82 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=136.1
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC-CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++|+.|++++|.+.+..|..+.++++|++|++++|.+.+ ..|..|..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 478999999999999999999999999999999999987 4788899999999999999999998899999999999999
Q ss_pred cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCC-CCCEEECCCCcCcccCCCCc---ccCCCCcccccCCC
Q 048618 80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH-GLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNK 155 (207)
Q Consensus 80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~ 155 (207)
+++|++++..|..+..+++|+.|++++|.++ .+|..+..++ +|+.+++++|++.|.++... +++...........
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~ 582 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQ 582 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGG
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCcc
Confidence 9999999988999999999999999999999 5666688887 59999999999999888753 33222222223344
Q ss_pred CCCCCCCC
Q 048618 156 ELCGGVKG 163 (207)
Q Consensus 156 ~~c~~~~~ 163 (207)
..|..+..
T Consensus 583 ~~C~~p~~ 590 (606)
T 3vq2_A 583 MTCATPVE 590 (606)
T ss_dssp CCCC----
T ss_pred ceeCCChH
Confidence 55665443
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=4.2e-20 Score=129.69 Aligned_cols=134 Identities=27% Similarity=0.325 Sum_probs=118.2
Q ss_pred CCccEEECCCCCCc-ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46899999999998 67888889999999999999999865 7788999999999999999887888888899999999
Q ss_pred cCCCCCCCch-hHHhhcCCCCCEEeCCCCcCCCCcc---ccccCCCCCCEEECCCCcCccc
Q 048618 80 LSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIP---NCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 80 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999998643 3678899999999999999986655 4788999999999999987643
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.83 E-value=5.9e-20 Score=126.44 Aligned_cols=127 Identities=27% Similarity=0.344 Sum_probs=111.7
Q ss_pred CccEEECCCCCCc-ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 6899999999998 77888889999999999999999866 67889999999999999998878888888999999999
Q ss_pred CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCcc---ccccCCCCCCEEECCC
Q 048618 81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSIP---NCFEGMHGLSVIDISD 130 (207)
Q Consensus 81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~l~l~~ 130 (207)
++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999864 34778899999999999999987655 5788899999998863
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=9.1e-20 Score=146.89 Aligned_cols=151 Identities=22% Similarity=0.226 Sum_probs=106.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|+.|++++|.+....+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 67888888888888888888888888888888888887777888888888888888888887777778888888888888
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEG 153 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~ 153 (207)
+|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++.. |....+..+..+++.+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSG 227 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTT
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcC
Confidence 88887655556666666677766663 33333334455556666666666655532 3333333444444333
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=150.00 Aligned_cols=135 Identities=24% Similarity=0.278 Sum_probs=101.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|+.|++++|.+....+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 56778888888887777778888888888888888777667777778888888888887776666667777778888888
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 8777766666777777777777777777766666677777777777777766543
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=147.31 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=130.7
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCCCCCCeeeccCCcCCCccch-hhhCCCCCCE
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSLLKLHYLSLSNNQFVQELPK-ELEKLVQLSE 77 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 77 (207)
++|+.|++++|.+++..|..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|. .+..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 368899999999998888899999999999999999986 4557788999999999999999874554 4778889999
Q ss_pred EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCC
Q 048618 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKE 156 (207)
Q Consensus 78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~ 156 (207)
|++++|.+++..+..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|+++...+. ...++.+..+++.+|+.
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 99999998876665443 68999999999998 6677777999999999999999855444 35677888899999999
Q ss_pred CCCC
Q 048618 157 LCGG 160 (207)
Q Consensus 157 ~c~~ 160 (207)
.|.+
T Consensus 481 ~c~c 484 (520)
T 2z7x_B 481 DCSC 484 (520)
T ss_dssp CCCH
T ss_pred cccC
Confidence 8874
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=144.35 Aligned_cols=152 Identities=25% Similarity=0.270 Sum_probs=99.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|+|++|.++...+..|.++++|++|+|++|.+.+..+..|.++++|+.|++++|++....+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 56778888888887777778888888888888888877777778888888888888888776666677777788888888
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGN 154 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n 154 (207)
+|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++. +|....+..+..+++.+|
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTS
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCC
Confidence 88777555555666666666666663 3332233345555555555555555542 233333333444444333
No 46
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.82 E-value=2.3e-19 Score=127.00 Aligned_cols=135 Identities=25% Similarity=0.266 Sum_probs=119.3
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
.+.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 367899999998 455544 37999999999999987777889999999999999999988788889999999999999
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 9999877777889999999999999999777777889999999999999999887743
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2.5e-20 Score=146.15 Aligned_cols=138 Identities=25% Similarity=0.258 Sum_probs=123.3
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|+|++|.|++..+.+|.++++|++|+|++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 47899999999999888889999999999999999999877888999999999999999999888999999999999999
Q ss_pred CCCCCCCchhHHh---hcCCCCCEEeCCCCcCCCCccccccCCCC--CCEEECCCCcCcccCC
Q 048618 81 SHNFLGGELLSQI---CNMESLEKLNLSHNNLSGSIPNCFEGMHG--LSVIDISDNQLQGPVP 138 (207)
Q Consensus 81 ~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~~ 138 (207)
++|.+++..+..+ ..+++|+.|+|++|.++...+..+..++. ++.+++++|++.|.+.
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 9999997655555 56899999999999999777778888876 4889999999988764
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=147.53 Aligned_cols=154 Identities=23% Similarity=0.245 Sum_probs=128.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|+|++|.+++..|.+|.++++|++|+|++|.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 47899999999999888999999999999999999998777777889999999999999998888888999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGN 154 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n 154 (207)
++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. ..+..+..+++.++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 999998777778888899999999999988777777888888888888888887655432 33444444444443
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=5.8e-20 Score=141.32 Aligned_cols=156 Identities=22% Similarity=0.223 Sum_probs=121.7
Q ss_pred CCccEEECCCCCCcccCCccc--CCCCCCCEeeCcCCCCCCCcchhhcCC-----CCCCeeeccCCcCCCccchhhhCCC
Q 048618 1 NSLTKLILRGNQLTGRLPTEI--GSFKELEYLDLSANRFNNSVPKSLGSL-----LKLHYLSLSNNQFVQELPKELEKLV 73 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~ 73 (207)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|+.|++++|++.+..++.+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 368899999999988888876 8899999999999999876 7777766 8899999999998888878888889
Q ss_pred CCCEEecCCCCCCCc--hhHHh--hcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEECCCCcCcccCCC--CcccC
Q 048618 74 QLSELDLSHNFLGGE--LLSQI--CNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDISDNQLQGPVPN--STAFR 144 (207)
Q Consensus 74 ~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~~ 144 (207)
+|++|++++|++.+. .+..+ ..+++|+.|++++|.+++. ....+..+++|+.|++++|.+++..|. ...+.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999987654 23444 6788889999999888732 223445778888888888888876532 24457
Q ss_pred CCCcccccCCCCC
Q 048618 145 NAPVEALEGNKEL 157 (207)
Q Consensus 145 ~~~~~~~~~n~~~ 157 (207)
.+..+++.+|...
T Consensus 254 ~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 254 QLNSLNLSFTGLK 266 (312)
T ss_dssp TCCEEECTTSCCS
T ss_pred CCCEEECCCCccC
Confidence 7777777777644
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=9.5e-20 Score=151.56 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=97.7
Q ss_pred CccEEECCCCCCcccCCcc-cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc---cchhhhCCCCCCE
Q 048618 2 SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE---LPKELEKLVQLSE 77 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~ 77 (207)
+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 4555555555555443332 55555666666666665555555566666666666666665542 2234566666666
Q ss_pred EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCC
Q 048618 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKE 156 (207)
Q Consensus 78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~ 156 (207)
|++++|.+++..|..+..+++|+.|++++|.+++..|+.+..++.| .+++++|++++..|.. ..++.+..+++.+|+.
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 6666666665556666666777777777777766666666666667 7777777776555543 4456677777788887
Q ss_pred CCCC
Q 048618 157 LCGG 160 (207)
Q Consensus 157 ~c~~ 160 (207)
.|.+
T Consensus 560 ~c~c 563 (606)
T 3t6q_A 560 DCTC 563 (606)
T ss_dssp ECSG
T ss_pred cccC
Confidence 7764
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.4e-19 Score=150.98 Aligned_cols=160 Identities=26% Similarity=0.289 Sum_probs=112.0
Q ss_pred CccEEECCCCCCc--ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc--------hhhhC
Q 048618 2 SLTKLILRGNQLT--GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP--------KELEK 71 (207)
Q Consensus 2 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~ 71 (207)
+|+.|++++|.+. +..|..+.++++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+ ..+..
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 3455555555544 3456667777777777777777776666667777777777777777765322 12566
Q ss_pred CCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc--ccCCCCcc
Q 048618 72 LVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST--AFRNAPVE 149 (207)
Q Consensus 72 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~~~ 149 (207)
+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+... .++.+..+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 7777788888877775544567777888888888888876666667777888888888888776555432 46777788
Q ss_pred cccCCCCCCCCC
Q 048618 150 ALEGNKELCGGV 161 (207)
Q Consensus 150 ~~~~n~~~c~~~ 161 (207)
++.+|+..|++.
T Consensus 615 ~l~~N~~~c~c~ 626 (680)
T 1ziw_A 615 DMRFNPFDCTCE 626 (680)
T ss_dssp ECTTCCCCBCCC
T ss_pred EccCCCcccCCc
Confidence 888888888764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=143.82 Aligned_cols=153 Identities=23% Similarity=0.210 Sum_probs=123.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 68899999999997777789999999999999999987778889999999999999999987777778889999999999
Q ss_pred CCCCCCchh-HHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCC
Q 048618 82 HNFLGGELL-SQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGN 154 (207)
Q Consensus 82 ~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n 154 (207)
+|.+++... ..+..+++|+.|++++| .++...+..+..+++|+.|++++|.+++..+.. ..++.+..+++.+|
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 999885443 46778899999999988 466556678888888999999999888765543 33344444444444
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=4.1e-19 Score=127.84 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=127.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.++ .+| .+..+++|++|++++|.+.. ...+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 6899999999999 555 68999999999999997763 3478899999999999999988788889999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCc-CCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~ 155 (207)
+|.+++..+..+..+++|+.|++++|. ++ ..+ .+..+++|+.|++++|+++.. +....++.+..+.+.+|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence 999998788899999999999999998 66 445 688999999999999999864 355667778888887776
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.9e-19 Score=146.84 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=130.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCC--cchhhcCCCCCCeeeccCCcCCCccc-hhhhCCCCCCE
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNS--VPKSLGSLLKLHYLSLSNNQFVQELP-KELEKLVQLSE 77 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 77 (207)
++|+.|++++|.+++..|..+.++++|++|++++|.+.+. .|..|..+++|+.|++++|.+.+..| ..+..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 3688999999999988899999999999999999999863 34668899999999999999987444 45788899999
Q ss_pred EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCC
Q 048618 78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKE 156 (207)
Q Consensus 78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~ 156 (207)
|++++|.+++..+..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|+++...+. ...++.+..+++.+|+.
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 99999999866554332 68999999999998 5666666899999999999999965544 46677888889999999
Q ss_pred CCCC
Q 048618 157 LCGG 160 (207)
Q Consensus 157 ~c~~ 160 (207)
.|++
T Consensus 510 ~c~c 513 (562)
T 3a79_B 510 DCTC 513 (562)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 8864
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=8.5e-19 Score=138.64 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=48.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 34445555555444444444444445555554444444444444444444444444444443333333444444444444
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNN 108 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~ 108 (207)
+|.+++..+..+..+++|+.|++++|.
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccCccChhhccCCCCCCEEECCCCc
Confidence 444443333333444444444444433
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1.6e-19 Score=150.21 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=127.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 57899999999998888999999999999999999998888899999999999999999988888899999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCC--cccccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAP--VEALEGNK 155 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~--~~~~~~n~ 155 (207)
+|.+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+.. ..+..+. .+++.+|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 99998776777888999999999999998754444555889999999999888655432 3344444 44455543
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=8.7e-19 Score=145.75 Aligned_cols=85 Identities=25% Similarity=0.218 Sum_probs=39.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 34444444444444444444444444444444444443333334444455555555554444444444444444444444
Q ss_pred CCCCC
Q 048618 82 HNFLG 86 (207)
Q Consensus 82 ~n~l~ 86 (207)
+|.++
T Consensus 180 ~N~l~ 184 (597)
T 3oja_B 180 SNRLT 184 (597)
T ss_dssp TSCCS
T ss_pred CCCCC
Confidence 44443
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=5.4e-20 Score=136.23 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=119.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCcchhhcCCCCCCeeeccC-CcCCCccchhhhCCCCCCEEe
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSVPKSLGSLLKLHYLSLSN-NQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 79 (207)
+++.|++++|.+++..+..|.++++|++|++++|. +....+..|..+++|+.|++++ |.+.+..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68889999999997777788899999999999997 8766666888899999999998 888877777888889999999
Q ss_pred cCCCCCCCchhHHhhcCCCCC---EEeCCCC-cCCCCccccccCCCCCC-EEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618 80 LSHNFLGGELLSQICNMESLE---KLNLSHN-NLSGSIPNCFEGMHGLS-VIDISDNQLQGPVPNSTAFRNAPVEALEGN 154 (207)
Q Consensus 80 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n 154 (207)
+++|.+++ .|. +..+++|+ .|++++| .+++..+..+..+++|+ .+++++|.++...+.......+..+++.+|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 99998875 444 67777777 8888888 78766666788888888 888888888744443333345566666666
Q ss_pred C
Q 048618 155 K 155 (207)
Q Consensus 155 ~ 155 (207)
.
T Consensus 190 ~ 190 (239)
T 2xwt_C 190 K 190 (239)
T ss_dssp T
T ss_pred C
Confidence 3
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=149.16 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=88.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 345555555555533222 5555555555555555554333 34555566666666666655555555556666666666
Q ss_pred CCCCCC-CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCC
Q 048618 81 SHNFLG-GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELC 158 (207)
Q Consensus 81 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c 158 (207)
++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..++.+..+++.+|+..|
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 666554 244555555666666666666666555555666666666666666665554432 344555566666666555
Q ss_pred CC
Q 048618 159 GG 160 (207)
Q Consensus 159 ~~ 160 (207)
..
T Consensus 533 ~~ 534 (570)
T 2z63_A 533 SC 534 (570)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.8e-19 Score=140.65 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=124.0
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++++.|++++|.++...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 36899999999999766667899999999999999999877889999999999999999999888889999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999966656678999999999999999988888899999999999999999764
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=3.6e-19 Score=149.93 Aligned_cols=155 Identities=25% Similarity=0.252 Sum_probs=132.9
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 36899999999999877788999999999999999999888999999999999999999998777778999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc---ccCCCCcccccCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNK 155 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~ 155 (207)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+... ....+..+++.+|.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999987777888999999999999999998888888899999999999999887655431 23456666666653
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=2.9e-19 Score=137.44 Aligned_cols=153 Identities=23% Similarity=0.205 Sum_probs=124.4
Q ss_pred CCccEEECCCCCCcccCCcccCCC-----CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhh--hC
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKEL--EK 71 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~ 71 (207)
++|+.|++++|.+++. |..+..+ ++|++|++++|.+.+..+..|..+++|+.|++++|++.+. .+..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 4789999999999976 8878777 8999999999999988888999999999999999998664 33444 78
Q ss_pred CCCCCEEecCCCCCCCc---hhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCCCcccCCCC
Q 048618 72 LVQLSELDLSHNFLGGE---LLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147 (207)
Q Consensus 72 l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 147 (207)
+++|++|++++|.+++. ....+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|.... ..+.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence 89999999999999842 22344578999999999999997664 45667889999999999998 4554433 6777
Q ss_pred cccccCCCC
Q 048618 148 VEALEGNKE 156 (207)
Q Consensus 148 ~~~~~~n~~ 156 (207)
.+++.+|..
T Consensus 278 ~L~Ls~N~l 286 (312)
T 1wwl_A 278 VLDLSYNRL 286 (312)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 777877764
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=156.34 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=44.5
Q ss_pred hhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC--------------------cccCCCCccccc
Q 048618 93 ICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS--------------------TAFRNAPVEALE 152 (207)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--------------------~~~~~~~~~~~~ 152 (207)
+..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+++..+.. ..+..+..+++.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~ 555 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence 445566777777777777666666777777777777777666543322 123356677788
Q ss_pred CCCCCCCC
Q 048618 153 GNKELCGG 160 (207)
Q Consensus 153 ~n~~~c~~ 160 (207)
+|+..|++
T Consensus 556 ~Np~~C~c 563 (844)
T 3j0a_A 556 HNKFICEC 563 (844)
T ss_dssp EECCCCSS
T ss_pred CCCccccc
Confidence 88888854
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=1.3e-19 Score=149.05 Aligned_cols=140 Identities=23% Similarity=0.208 Sum_probs=123.9
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..|.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 36899999999999888899999999999999999999888889999999999999999999888888999999999999
Q ss_pred CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCCCC
Q 048618 81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
++|.+++. .+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 99999863 4567888999999999999844444 467889999999999999998766554
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.5e-19 Score=151.42 Aligned_cols=154 Identities=17% Similarity=0.262 Sum_probs=84.9
Q ss_pred CccEEECCCCCCccc-----------------CCcccC--CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-C
Q 048618 2 SLTKLILRGNQLTGR-----------------LPTEIG--SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-F 61 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l 61 (207)
+|+.|+|++|.+++. +|..+. ++++|++|++++|.+.+.+|..|.++++|+.|++++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 455555555555543 555555 55555555555555555555555555555555555555 5
Q ss_pred CC-ccchhhhCC------CCCCEEecCCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618 62 VQ-ELPKELEKL------VQLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 62 ~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|+.|++++|.+++.+| .+..+++|+.|++++|.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 54 455555443 55555555555555 4444 55555556666666665554555 55555556666666665
Q ss_pred CcccCCCCcccCC-CCcccccCCCCC
Q 048618 133 LQGPVPNSTAFRN-APVEALEGNKEL 157 (207)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~n~~~ 157 (207)
++........+.. +..+++.+|...
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc
Confidence 5522222344445 666666666533
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=146.42 Aligned_cols=138 Identities=26% Similarity=0.264 Sum_probs=123.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..++.|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 68899999999998888899999999999999999998778889999999999999999988888899999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCC-CccccccCCCCCCEEECCCCcCcccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.++...+.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 999987655568889999999999999986 3688899999999999999998866543
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.1e-19 Score=152.11 Aligned_cols=152 Identities=22% Similarity=0.345 Sum_probs=134.4
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCC-CcchhhcCC------CCCCeeeccCCcCCCccch--hhh
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNN-SVPKSLGSL------LKLHYLSLSNNQFVQELPK--ELE 70 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~ 70 (207)
++|+.|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|+.|++++|.+. .+|. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 478999999999999999999999999999999998 887 788888876 99999999999998 7777 899
Q ss_pred CCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCC-CCEEECCCCcCcccCCCCcc---cCCC
Q 048618 71 KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG-LSVIDISDNQLQGPVPNSTA---FRNA 146 (207)
Q Consensus 71 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~---~~~~ 146 (207)
.+++|++|++++|.+++.+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|.... +..+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 99999999999999998888 8889999999999999999 77888999999 999999999999 5555422 2356
Q ss_pred CcccccCCCC
Q 048618 147 PVEALEGNKE 156 (207)
Q Consensus 147 ~~~~~~~n~~ 156 (207)
..+++.+|..
T Consensus 405 ~~L~Ls~N~l 414 (636)
T 4eco_A 405 SAIDFSYNEI 414 (636)
T ss_dssp EEEECCSSCT
T ss_pred CEEECcCCcC
Confidence 7777777764
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=8.9e-19 Score=145.69 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=79.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.+++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34556666666654444445556666666666666665555556666666666666666655555555666666666666
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
+|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 666654444445556666666666666665555556666666666666665554
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=1.4e-18 Score=124.98 Aligned_cols=129 Identities=17% Similarity=0.282 Sum_probs=112.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 47899999999776 3457899999999999999999878888999999999999999999888899999999999999
Q ss_pred CCCC-CCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 81 SHNF-LGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 81 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
++|. ++ ..+ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9998 66 444 688999999999999999854 3 68889999999999999864
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=5.8e-18 Score=130.99 Aligned_cols=130 Identities=27% Similarity=0.353 Sum_probs=96.8
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+... |..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEEECC
Confidence 678899999999977777889999999999999999887788898999999999998887643 33322 567777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCC--CccccccCCCCCCEEECCCCcCc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSG--SIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
+|.+++..+..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777776666667777777777777777653 44555666666666666666554
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=151.08 Aligned_cols=156 Identities=22% Similarity=0.297 Sum_probs=131.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCc-chhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSV-PKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++++.|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|+.|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 46899999999999988999999999999999999655555 78899999999999999999988899999999999999
Q ss_pred cCCCCCCCchhHH--hhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCCCc-cc--CCCCcccccC
Q 048618 80 LSHNFLGGELLSQ--ICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPNST-AF--RNAPVEALEG 153 (207)
Q Consensus 80 l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~--~~~~~~~~~~ 153 (207)
+++|.+++..+.. +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+... .+ ..+..+.+..
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 9999998755554 8899999999999999987654 678999999999999999987665442 12 4555555555
Q ss_pred CCC
Q 048618 154 NKE 156 (207)
Q Consensus 154 n~~ 156 (207)
|..
T Consensus 184 n~l 186 (844)
T 3j0a_A 184 NSL 186 (844)
T ss_dssp SBS
T ss_pred Ccc
Confidence 543
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.7e-18 Score=132.86 Aligned_cols=150 Identities=19% Similarity=0.277 Sum_probs=70.9
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
|+.|++++|.+++..+..+.++++|++|++++|.+.. ..+..|..+++|+.|++++|.+... |..+. ++|++|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l 199 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHL 199 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEEC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEEC
Confidence 4444444444443333344445555555555554432 3333444444444444444444321 11111 34444445
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~ 155 (207)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++........++.+..+++.+|.
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 555554444455555555566666555555444445555555566666655555332333444445555555443
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=139.93 Aligned_cols=159 Identities=23% Similarity=0.238 Sum_probs=94.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCc-CCCccchhhhCCCCCCEEe
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQ-FVQELPKELEKLVQLSELD 79 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 79 (207)
+|++|++++|.+++..+..+.++++|++|++++|.+....+ ..|..+++|+.|++++|+ +....+..+..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 46666666666664444446666666666666666653333 345556666666666652 3333344444455555555
Q ss_pred cCCCCCCCchhHHhh------------------------cCCCCCEEeCCCCcCCCC-----------------------
Q 048618 80 LSHNFLGGELLSQIC------------------------NMESLEKLNLSHNNLSGS----------------------- 112 (207)
Q Consensus 80 l~~n~l~~~~~~~~~------------------------~l~~L~~L~l~~n~l~~~----------------------- 112 (207)
+++|.+.+..+..+. .+++|+.|++++|.+++.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 555544443333333 355666666666666542
Q ss_pred --------ccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618 113 --------IPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 113 --------~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 160 (207)
+|+.+..+++|+.|++++|+++...+.. ..++.+..+++.+|+..|..
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 2334566788888889888888544443 56778888888888888864
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3.6e-18 Score=132.30 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=73.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCC--------------------CCCCeeeccCC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSL--------------------LKLHYLSLSNN 59 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l--------------------~~L~~L~l~~n 59 (207)
+|++|++++|.++...+..+.++++|++|++++|.+.. ..+..+..+ ++|+.|++++|
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence 45556666666655444556666666666666665532 333333332 23444444444
Q ss_pred cCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618 60 QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV 137 (207)
Q Consensus 60 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 137 (207)
.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++...
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 444444445555556666666666665554445555566666666666665 44555555666666666666655443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.1e-19 Score=143.34 Aligned_cols=153 Identities=23% Similarity=0.206 Sum_probs=116.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhh-CCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELE-KLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l 80 (207)
+|+.|++++|.+++..+. .+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..|..+. .+++|+.|++
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 566777777777655443 357788888888888877777888888888888888888887777765 6888888888
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG 160 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 160 (207)
++|.+++.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+....++.+..+++.+|+..|+.
T Consensus 177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 888887552 23357888888888888885444 477888888899988888875555566677888888888887653
No 76
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=6.7e-19 Score=126.26 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=122.8
Q ss_pred CccEEECCCCCCcccCCc-ccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPT-EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+++.|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 689999999999977664 5899999999999999999988999999999999999999999988888999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccc-cccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~ 159 (207)
++|++++..|..+..+++|+.|++++|.+++..+. .+.. .++...+.++...|..|. .++.....++..+...|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~--~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh--HHcCCChhhCcHhhcCcC
Confidence 99999988899999999999999999999875442 1111 112223344455554443 333344445556666676
Q ss_pred CC
Q 048618 160 GV 161 (207)
Q Consensus 160 ~~ 161 (207)
+.
T Consensus 186 ~~ 187 (192)
T 1w8a_A 186 SE 187 (192)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=133.66 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=107.1
Q ss_pred CccEEECCCCCCcccCC----cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cc--hhhhCCC
Q 048618 2 SLTKLILRGNQLTGRLP----TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LP--KELEKLV 73 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~~~l~ 73 (207)
+|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+. .+ ..+..++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 57788888888876544 3445678888888888888777777788888888888888876542 11 1235677
Q ss_pred CCCEEecCCCCCCCchhH----HhhcCCCCCEEeCCCCcCCCCccccccCC---CCCCEEECCCCcCcccCCCCcccCCC
Q 048618 74 QLSELDLSHNFLGGELLS----QICNMESLEKLNLSHNNLSGSIPNCFEGM---HGLSVIDISDNQLQGPVPNSTAFRNA 146 (207)
Q Consensus 74 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~ 146 (207)
+|++|++++|.++.. +. .+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.++. +|... .+.+
T Consensus 198 ~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-~~~L 274 (310)
T 4glp_A 198 AIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-PAKL 274 (310)
T ss_dssp CCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-CSCC
T ss_pred CCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh-cCCC
Confidence 888888888888632 22 24567888888888888887666666655 578888888888873 34332 2667
Q ss_pred CcccccCCCCC
Q 048618 147 PVEALEGNKEL 157 (207)
Q Consensus 147 ~~~~~~~n~~~ 157 (207)
..+++..|...
T Consensus 275 ~~L~Ls~N~l~ 285 (310)
T 4glp_A 275 RVLDLSSNRLN 285 (310)
T ss_dssp SCEECCSCCCC
T ss_pred CEEECCCCcCC
Confidence 77777777543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=9.6e-19 Score=129.50 Aligned_cols=154 Identities=13% Similarity=0.228 Sum_probs=128.4
Q ss_pred CCccEEECCCCC-CcccCCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCC--
Q 048618 1 NSLTKLILRGNQ-LTGRLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS-- 76 (207)
Q Consensus 1 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-- 76 (207)
++|+.|++++|. ++...+.+|.++++|++|++++ |.+.+..+..|.++++|+.|++++|.+.+ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 478999999997 8877777999999999999998 99997777889999999999999999976 555 88888888
Q ss_pred -EEecCCC-CCCCchhHHhhcCCCCC-EEeCCCCcCCCCccccccCCCCCCEEECCCCc-CcccCCCC-ccc-CCCCccc
Q 048618 77 -ELDLSHN-FLGGELLSQICNMESLE-KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ-LQGPVPNS-TAF-RNAPVEA 150 (207)
Q Consensus 77 -~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~-~~~-~~~~~~~ 150 (207)
+|++++| .+++..+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|+ ++...+.. ..+ ..+..++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 9999999 89877777788999999 9999999998444445555 789999999995 88665554 345 6788888
Q ss_pred ccCCCCC
Q 048618 151 LEGNKEL 157 (207)
Q Consensus 151 ~~~n~~~ 157 (207)
+.+|...
T Consensus 212 l~~N~l~ 218 (239)
T 2xwt_C 212 VSQTSVT 218 (239)
T ss_dssp CTTCCCC
T ss_pred CCCCccc
Confidence 8887654
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.2e-18 Score=149.62 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=127.2
Q ss_pred CCccEEECCCCCCccc-----------------CCcccC--CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-
Q 048618 1 NSLTKLILRGNQLTGR-----------------LPTEIG--SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ- 60 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~- 60 (207)
++|+.|+|++|.++++ +|..+. ++++|++|+|++|.+.+.+|..|.++++|+.|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 4789999999999973 888877 99999999999999988999999999999999999998
Q ss_pred CCC-ccchhhhCCC-------CCCEEecCCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618 61 FVQ-ELPKELEKLV-------QLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 130 (207)
Q Consensus 61 l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 130 (207)
+++ .+|..+..++ +|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 877 6777666554 8999999999998 6776 8889999999999999988 666 788888899999999
Q ss_pred CcCcccCCCCcccCC-CCcccccCCCCC
Q 048618 131 NQLQGPVPNSTAFRN-APVEALEGNKEL 157 (207)
Q Consensus 131 n~~~~~~~~~~~~~~-~~~~~~~~n~~~ 157 (207)
|.++...+....+.. +..+++.+|...
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred CccccchHHHhhccccCCEEECcCCCCC
Confidence 988833333455566 777777777543
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.7e-18 Score=127.96 Aligned_cols=144 Identities=30% Similarity=0.431 Sum_probs=91.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 56666666666664333 6666666666666666653 22 366666777777777766543 345666777777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~ 156 (207)
+|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.. +....++.+..+++.+|+.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEE
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcc
Confidence 7777643 456667777777777777765443 66777777777777777653 3345556666666666543
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.7e-17 Score=127.29 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=35.8
Q ss_pred hhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCc
Q 048618 69 LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPV 148 (207)
Q Consensus 69 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 148 (207)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ ...++.+..
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~ 221 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFI 221 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCE
Confidence 3344444444444444433221 3444444444444444443222 4444455555555555543332 233444444
Q ss_pred ccccCCCC
Q 048618 149 EALEGNKE 156 (207)
Q Consensus 149 ~~~~~n~~ 156 (207)
+.+.+|+.
T Consensus 222 L~l~~N~i 229 (308)
T 1h6u_A 222 VTLTNQTI 229 (308)
T ss_dssp EEEEEEEE
T ss_pred EEccCCee
Confidence 44444443
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.1e-17 Score=129.63 Aligned_cols=130 Identities=25% Similarity=0.364 Sum_probs=89.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+... |..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEEECC
Confidence 567778888877766677777788888888888877766677777777888888887777643 33322 577777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCC--CccccccCCCCCCEEECCCCcCcc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSG--SIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
+|.+.+..+..+..+++|+.|++++|.++. ..+..+..+ +|+.+++++|.++.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 777776655667777777777777777753 445555555 55555555555543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.2e-17 Score=128.24 Aligned_cols=146 Identities=23% Similarity=0.345 Sum_probs=115.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.+.. .+..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEEC
Confidence 468889999999885444 88899999999999998754 3 6888899999999999887643 3788889999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ ...++.+..+++.+|...
T Consensus 137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred CCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC
Confidence 9998886543 7788899999999998885443 7888899999999998876544 556677777777777543
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-18 Score=133.33 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=106.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhh-hCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 80 (207)
+|+.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 466666666666654433 25667788888888877666677777888888888888777666655 36778888888
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~ 159 (207)
++|.+++. + ....+++|+.|++++|.+++. +..+..+++|+.|++++|+++...+....++.+..+++.+|+..|+
T Consensus 177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence 88887644 2 223467788888888888744 4447777888888888888876544445667777777777777754
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-17 Score=125.55 Aligned_cols=147 Identities=23% Similarity=0.298 Sum_probs=119.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. +.. .. ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Ccc-cc-CcccEEEc
Confidence 468999999999984 45 68899999999999999986554 88999999999999998764 322 22 78999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~ 159 (207)
++|.+++. +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. +....++.+..+++.+|+..+.
T Consensus 114 ~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 99999864 3578899999999999999865 3 688899999999999999876 5556677778888877765554
No 86
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.4e-18 Score=149.17 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=124.5
Q ss_pred CCcccCCCCCCCEeeCcCCCCCC-----------------Ccchhhc--CCCCCCeeeccCCcCCCccchhhhCCCCCCE
Q 048618 17 LPTEIGSFKELEYLDLSANRFNN-----------------SVPKSLG--SLLKLHYLSLSNNQFVQELPKELEKLVQLSE 77 (207)
Q Consensus 17 ~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 77 (207)
+|..+.++++|++|+|++|.+++ .+|..+. ++++|+.|++++|.+.+.+|..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999997 2788877 9999999999999999999999999999999
Q ss_pred EecCCCC-CCC-chhHHhhcCC-------CCCEEeCCCCcCCCCccc--cccCCCCCCEEECCCCcCcccCCCCcccCCC
Q 048618 78 LDLSHNF-LGG-ELLSQICNME-------SLEKLNLSHNNLSGSIPN--CFEGMHGLSVIDISDNQLQGPVPNSTAFRNA 146 (207)
Q Consensus 78 L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 146 (207)
|++++|+ +++ .+|..+..++ +|+.|++++|.++ .+|. .+..+++|+.|++++|.++ .+|....++.+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence 9999998 887 7888777665 9999999999999 7787 8999999999999999999 67766777788
Q ss_pred CcccccCCCCC
Q 048618 147 PVEALEGNKEL 157 (207)
Q Consensus 147 ~~~~~~~n~~~ 157 (207)
..+.+.+|...
T Consensus 598 ~~L~Ls~N~l~ 608 (876)
T 4ecn_A 598 TDLKLDYNQIE 608 (876)
T ss_dssp SEEECCSSCCS
T ss_pred eEEECcCCccc
Confidence 88888887654
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=1.7e-17 Score=129.02 Aligned_cols=127 Identities=20% Similarity=0.370 Sum_probs=61.7
Q ss_pred cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCC
Q 048618 21 IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLE 100 (207)
Q Consensus 21 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 100 (207)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|++|++++|.+++. +.+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 3444445555555554443222 44455555555555544432 2344455555555555555432 2344455555
Q ss_pred EEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618 101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGN 154 (207)
Q Consensus 101 ~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n 154 (207)
.|++++|.+++..++.+..+++|+.|++++|++++..| ...++.+..+++.+|
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 55555555554445555555555555555555554433 334444444444444
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.9e-18 Score=140.45 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=80.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch--------------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK-------------- 67 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 67 (207)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|+.|++++|.+.+..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 68899999999998888899999999999999999886555 77777787777777765432211
Q ss_pred --hhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccccc-CCCCCCEEECCCCcCc
Q 048618 68 --ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE-GMHGLSVIDISDNQLQ 134 (207)
Q Consensus 68 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~l~l~~n~~~ 134 (207)
....+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 001223445555555555444444444455555555555555544444333 3444444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=131.75 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=129.3
Q ss_pred CCccEEECCCCCCcccCCccc--CCCCCCCEeeCcCCCCCCCcc----hhhcCCCCCCeeeccCCcCCCccchhhhCCCC
Q 048618 1 NSLTKLILRGNQLTGRLPTEI--GSFKELEYLDLSANRFNNSVP----KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQ 74 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 74 (207)
++|+.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358999999999999999988 899999999999999987544 44567999999999999999888899999999
Q ss_pred CCEEecCCCCCCCc--hh--HHhhcCCCCCEEeCCCCcCCCCccc----cccCCCCCCEEECCCCcCcccCCCC-ccc--
Q 048618 75 LSELDLSHNFLGGE--LL--SQICNMESLEKLNLSHNNLSGSIPN----CFEGMHGLSVIDISDNQLQGPVPNS-TAF-- 143 (207)
Q Consensus 75 L~~L~l~~n~l~~~--~~--~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~~-~~~-- 143 (207)
|++|++++|++.+. .+ ..+..+++|++|++++|.++. .+. .+..+++|+.|++++|.+++..|.. ..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998653 22 223578999999999999973 333 3578899999999999999875543 333
Q ss_pred -CCCCcccccCCCCC
Q 048618 144 -RNAPVEALEGNKEL 157 (207)
Q Consensus 144 -~~~~~~~~~~n~~~ 157 (207)
+.+..+++.+|...
T Consensus 250 ~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 250 SSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTCCCEECCSSCCC
T ss_pred cCcCCEEECCCCCCC
Confidence 68888888888655
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.9e-17 Score=123.82 Aligned_cols=145 Identities=23% Similarity=0.349 Sum_probs=124.7
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECC
Confidence 689999999999854 3 48899999999999999996554 89999999999999999763 348899999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
+|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ ...++.+..+++.+|...
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 9999864 4678899999999999999865 678899999999999999987655 666778888888877543
No 91
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=119.93 Aligned_cols=110 Identities=29% Similarity=0.395 Sum_probs=102.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++++.|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 36899999999998 67899999999999999999999888889999999999999999999988899999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSG 111 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 111 (207)
++|.++...+..+..+++|+.|++++|.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999997777778899999999999999875
No 92
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=2e-17 Score=116.97 Aligned_cols=114 Identities=29% Similarity=0.284 Sum_probs=103.4
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 36899999999999877788899999999999999999877778899999999999999999888888899999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 114 (207)
++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999997766677889999999999999987644
No 93
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.74 E-value=9e-18 Score=118.67 Aligned_cols=127 Identities=22% Similarity=0.279 Sum_probs=101.3
Q ss_pred CccEEECCCCCCcccCCcccCCCC-CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
+|+.|++++|.++. ++. +..+. +|++|++++|.+++. ..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 67889999999884 454 44444 899999999998854 57888889999999999988766666788899999999
Q ss_pred CCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccc----cccCCCCCCEEECCCCcCc
Q 048618 81 SHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPN----CFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 81 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~ 134 (207)
++|.+.. .+. .+..+++|+.|++++|.++. .|. .+..+++|+.+++++|...
T Consensus 96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9998864 444 67788899999999999874 344 4788889999999888764
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.7e-17 Score=135.80 Aligned_cols=143 Identities=30% Similarity=0.439 Sum_probs=92.8
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|++++|.+... ..+..+++|+.|+|+
T Consensus 66 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence 56777777777775443 6677777777777777664 22 566677777777777776543 346667777777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~ 155 (207)
+|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|++++. +....++.+..+++.+|.
T Consensus 140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 140 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 7777654 456667777777777777765544 66677777777777777653 334445555555555543
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=136.07 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=108.5
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC--ccchhhhCCCCCCEEec
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ--ELPKELEKLVQLSELDL 80 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l 80 (207)
|+.|++++|.+.... .+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+ ..|..+..+++|++|++
T Consensus 304 L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 455555555544221 12577888888888888887777788888888888888888876 45567788888888888
Q ss_pred CCCCCCCchhH-HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 81 SHNFLGGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 81 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
++|.+.+..|. .+..+++|+.|++++|.+++..+..+. ++|+.|++++|.++...+....++.+..+++.+|...
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC
Confidence 88888764444 466778888888888888766665543 6788888888888844433466777888888887654
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-17 Score=128.86 Aligned_cols=132 Identities=22% Similarity=0.210 Sum_probs=115.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 79 (207)
++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+. +. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEE
Confidence 3689999999999988888999999999999999999987777764 789999999999999765 32 23589999999
Q ss_pred cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+++|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++.|.
T Consensus 198 Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 198 LSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 999999854 455889999999999999999 5677889999999999999999843
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=2.3e-17 Score=136.21 Aligned_cols=134 Identities=25% Similarity=0.314 Sum_probs=109.5
Q ss_pred CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCCCCchh-HHhhcCCC
Q 048618 22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFLGGELL-SQICNMES 98 (207)
Q Consensus 22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 98 (207)
..+++|++|++++|.+++..|..+..+++|+.|++++|++.+. .|..+..+++|++|++++|.+++..| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6788999999999999988888899999999999999998763 35668889999999999999887344 45777889
Q ss_pred CCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
|+.|++++|.+++..+..+. ++|+.|++++|.++...+....++.+..+++.+|...
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 99999999999876665443 6899999999999865555567788888888888654
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=8.5e-17 Score=125.11 Aligned_cols=126 Identities=25% Similarity=0.440 Sum_probs=110.9
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.++...+ +..+++|++|++++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+++|+.|++
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEEC
Confidence 478999999999986544 89999999999999999864 4688999999999999999865 45889999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
++|.+++..+..+..+++|+.|++++|.+++..| +..+++|+.+++++|+++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999998888999999999999999999997666 888999999999999985
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=2.2e-18 Score=141.77 Aligned_cols=133 Identities=20% Similarity=0.283 Sum_probs=113.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc-cchhhhCCCCCCEEe
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE-LPKELEKLVQLSELD 79 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 79 (207)
++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .|..+..+++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 4789999999999998889999999999999999999988888899999999999999999863 567889999999999
Q ss_pred cCCCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618 80 LSHNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 80 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
+++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99998444444 6788899999999999999887777777666666666555554
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=1.4e-16 Score=128.82 Aligned_cols=145 Identities=24% Similarity=0.349 Sum_probs=88.2
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 45555555555554332 5556666666666666654333 5566666666666666654433 5566667777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~ 157 (207)
+|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| ...++.+..+.+.+|...
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 776665444 55666777777777776644 346667777777777777776655 455556666666555433
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=4.2e-17 Score=112.05 Aligned_cols=114 Identities=23% Similarity=0.261 Sum_probs=102.1
Q ss_pred CCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618 23 SFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101 (207)
Q Consensus 23 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 101 (207)
..++++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3588999999999998 67888889999999999999999876 77889999999999999999878888888999999
Q ss_pred EeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618 102 LNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 102 L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
|++++|.+++. .+..+..+++|+.|++++|++++..+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999864 34789999999999999999987654
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=4e-17 Score=114.41 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=113.1
Q ss_pred CCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618 23 SFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101 (207)
Q Consensus 23 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 101 (207)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4588999999999997 67788889999999999999999876 77889999999999999999878888888999999
Q ss_pred EeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCC----CCcccCCCCcccccCCCC
Q 048618 102 LNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVP----NSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 102 L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~~~~~~~~~n~~ 156 (207)
|++++|.+++.. +..+..+++|+.|++++|+++...+ ....++.+..+++.+|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999998653 3788999999999999999987665 335667777777766653
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=6.9e-17 Score=113.53 Aligned_cols=111 Identities=24% Similarity=0.306 Sum_probs=77.8
Q ss_pred CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
.+.+++++|.+. .+|..+ .++|+.|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777766 344433 25677777777777766677777777777777777777766666667777777777777
Q ss_pred CcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
|.+++..+..+..+++|+.|++++|+++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 7777666666777777888888888877776543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-16 Score=119.03 Aligned_cols=125 Identities=25% Similarity=0.342 Sum_probs=108.8
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++..+ +.++++|++|++++|.+.+. +. +.. ++|+.|++++|.+.+. ..+..+++|+.|++
T Consensus 63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEEC
Confidence 478999999999996554 89999999999999999864 33 333 8999999999999864 35889999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999865 3 688899999999999999866 6788999999999999999865
No 105
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=2.1e-16 Score=111.10 Aligned_cols=108 Identities=28% Similarity=0.297 Sum_probs=97.7
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
.+.+++++|.++ .+|..+. +++++|+|++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 468999999999 5676553 8999999999999988899999999999999999999988888899999999999999
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCc
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSI 113 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 113 (207)
|++++..+..+..+++|+.|++++|.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999877778999999999999999998553
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3e-16 Score=130.32 Aligned_cols=145 Identities=23% Similarity=0.369 Sum_probs=125.3
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 368899999999984 34 58999999999999999997655 89999999999999999753 36889999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~ 156 (207)
++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++..+ ...++.+..+++.+|..
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 99999863 4588899999999999999865 678899999999999999998766 66777888888877754
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=6.2e-16 Score=124.99 Aligned_cols=144 Identities=31% Similarity=0.381 Sum_probs=81.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++. +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 344445555544422 234555555555555555554332 5555566666666665554333 5556666666666
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE 156 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~ 156 (207)
+|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++. +....++.+..+++.+|..
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence 666654333 5566666666666666665444 55666777777777766654 3334555666666666543
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.4e-17 Score=129.05 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=60.3
Q ss_pred CccEEECCCCCCccc-CCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC-cCCCc-cchhhhCCCCCCEE
Q 048618 2 SLTKLILRGNQLTGR-LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN-QFVQE-LPKELEKLVQLSEL 78 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L 78 (207)
+|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++.. .+..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 344555555554433 4444445555555555555544444444445555555555555 33321 33334444555555
Q ss_pred ecCCC-CCCCc-hhHHhhcCC-CCCEEeCCCC--cCC-CCccccccCCCCCCEEECCCCc
Q 048618 79 DLSHN-FLGGE-LLSQICNME-SLEKLNLSHN--NLS-GSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 79 ~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
++++| .+++. .+..+..++ +|+.|++++| .++ ..++..+..+++|+.|++++|.
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 55555 44432 233344444 4555555544 232 1233334444455555555544
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.69 E-value=2.3e-16 Score=111.24 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=81.9
Q ss_pred CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
-+.+++++|.+. .+|..+. ++|+.|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367777777775 4555443 6777888888887777777777788888888888888766555667778888888888
Q ss_pred CcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
|.+++..+..+..+++|+.|++++|++.+.++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 8887665666777888888888888887776543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.3e-16 Score=129.28 Aligned_cols=107 Identities=26% Similarity=0.306 Sum_probs=57.8
Q ss_pred CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106 (207)
Q Consensus 27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 106 (207)
|+.|++++|.+++ +|. |..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5555555555553 333 555555555555555554 344555555555555555555553 33 455555555555555
Q ss_pred CcCCCCc-cccccCCCCCCEEECCCCcCcccCC
Q 048618 107 NNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 107 n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
|.+++.. |..+..+++|+.|++++|++++..+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555443 5555555555555555555554443
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=6e-17 Score=137.35 Aligned_cols=119 Identities=24% Similarity=0.272 Sum_probs=83.4
Q ss_pred cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhc
Q 048618 16 RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICN 95 (207)
Q Consensus 16 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 95 (207)
..+..+..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34666777778888888888777 55555567777888888888776 56677777778888888888777 55777777
Q ss_pred CCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618 96 MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 96 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 778888888888776 556667777788888888887765443
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=9.8e-17 Score=124.19 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=121.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCC-CCCCC-cchhhcCCCCCCeeeccCC-cCCCc-cchhhhCCC-CC
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN-RFNNS-VPKSLGSLLKLHYLSLSNN-QFVQE-LPKELEKLV-QL 75 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L 75 (207)
++|+.|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|+.|++++| .++.. .+..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 47899999999999888888999999999999999 67652 5666888999999999999 88754 567788899 99
Q ss_pred CEEecCCC--CCC-CchhHHhhcCCCCCEEeCCCCc-CCCCccccccCCCCCCEEECCCCc-Cccc-CCCCcccCCCCcc
Q 048618 76 SELDLSHN--FLG-GELLSQICNMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVIDISDNQ-LQGP-VPNSTAFRNAPVE 149 (207)
Q Consensus 76 ~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~~~~ 149 (207)
++|++++| .++ +..+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +... ......++.+..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 99999999 455 3456677789999999999998 776777788889999999999985 3221 1112345666666
Q ss_pred cccCC
Q 048618 150 ALEGN 154 (207)
Q Consensus 150 ~~~~n 154 (207)
++.++
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 66665
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=6e-16 Score=109.13 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=95.9
Q ss_pred cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
+.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 6777664 89999999999999888999999999999999999999887778899999999999999
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCCCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLSGS 112 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 112 (207)
.+++..+..+..+++|+.|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99977666789999999999999999854
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.6e-17 Score=140.85 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=103.4
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|..+++|+.|+|++|.+. .+|..+..+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 36889999999999 67877889999999999999999 78889999999999999999998 67888999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccccc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 118 (207)
++|.++ .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999998 6677799999999999999999987776553
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=5.5e-16 Score=109.43 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=105.9
Q ss_pred cccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCC
Q 048618 19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNME 97 (207)
Q Consensus 19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 97 (207)
..+.++.+|+.|++++|.+.. ++. +..+. +|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 456788999999999999984 454 55554 999999999999865 6788999999999999999966556668999
Q ss_pred CCCEEeCCCCcCCCCccc--cccCCCCCCEEECCCCcCcccCCC----CcccCCCCcccccCC
Q 048618 98 SLEKLNLSHNNLSGSIPN--CFEGMHGLSVIDISDNQLQGPVPN----STAFRNAPVEALEGN 154 (207)
Q Consensus 98 ~L~~L~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~~~~~n 154 (207)
+|+.|++++|.++ ..|. .+..+++|+.+++++|+++...+. ...++.+..++..+|
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999997 4454 788999999999999999855432 345566666665554
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=7.6e-17 Score=126.35 Aligned_cols=133 Identities=22% Similarity=0.250 Sum_probs=69.4
Q ss_pred CccEEECCCCCCcccCC----cccCCCC-CCCEeeCcCCCCCCCcchhhcCC-----CCCCeeeccCCcCCCccchhh--
Q 048618 2 SLTKLILRGNQLTGRLP----TEIGSFK-ELEYLDLSANRFNNSVPKSLGSL-----LKLHYLSLSNNQFVQELPKEL-- 69 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~-- 69 (207)
+|+.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 36666666666665444 4555565 66666666666665555555443 566666666666655444432
Q ss_pred --hCC-CCCCEEecCCCCCCCchhHHhhc-----CCCCCEEeCCCCcCCCCc----cccccCCC-CCCEEECCCCcCc
Q 048618 70 --EKL-VQLSELDLSHNFLGGELLSQICN-----MESLEKLNLSHNNLSGSI----PNCFEGMH-GLSVIDISDNQLQ 134 (207)
Q Consensus 70 --~~l-~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~----~~~~~~~~-~L~~l~l~~n~~~ 134 (207)
..+ ++|++|++++|.+++..+..+.. ..+|+.|++++|.++... +..+...+ +|+.|++++|.++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 222 55666666666555444433322 135555555555554321 22223333 4555555555444
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=8.8e-15 Score=118.00 Aligned_cols=118 Identities=22% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|+.|++++|.+.+. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4678888888888854 4 578888888888888888764 3 77888888888888888764 2 677888888888
Q ss_pred CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618 81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ 132 (207)
Q Consensus 81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 132 (207)
++|.+++. + +..+++|+.|++++|.+++. + +..+++|+.|++++|+
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence 88888753 3 66778888888888877753 1 4445555555555553
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8e-17 Score=127.15 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=63.3
Q ss_pred CccEEECCCCC---CcccCCccc-------CCCCCCCEeeCcCCCCCC----CcchhhcCCCCCCeeeccCCcCCCccch
Q 048618 2 SLTKLILRGNQ---LTGRLPTEI-------GSFKELEYLDLSANRFNN----SVPKSLGSLLKLHYLSLSNNQFVQELPK 67 (207)
Q Consensus 2 ~L~~L~l~~n~---i~~~~~~~~-------~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 67 (207)
+|+.|+|++|. +++.+|..+ ..+++|++|+|++|.+.. .++..+..+++|+.|++++|.+....+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 45566666542 223333333 455666666666666554 2444555555566666665555432222
Q ss_pred hh----hCC---------CCCCEEecCCCCCCC-chh---HHhhcCCCCCEEeCCCCcCCC-----CccccccCCCCCCE
Q 048618 68 EL----EKL---------VQLSELDLSHNFLGG-ELL---SQICNMESLEKLNLSHNNLSG-----SIPNCFEGMHGLSV 125 (207)
Q Consensus 68 ~~----~~l---------~~L~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~ 125 (207)
.+ ..+ ++|++|++++|.++. ..+ ..+..+++|+.|++++|.++. ..+..+..+++|+.
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence 22 222 455555555555542 122 233344555555555555541 12224444555555
Q ss_pred EECCCCcC
Q 048618 126 IDISDNQL 133 (207)
Q Consensus 126 l~l~~n~~ 133 (207)
|++++|.+
T Consensus 221 L~Ls~n~l 228 (386)
T 2ca6_A 221 LDLQDNTF 228 (386)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 55555554
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=1.6e-18 Score=124.76 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=113.4
Q ss_pred CccEEECCCCCCcccCCc------ccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCC
Q 048618 2 SLTKLILRGNQLTGRLPT------EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQL 75 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 75 (207)
+++.++++++.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455667777777777666 89999999999999999986 56 8899999999999999997 567777778899
Q ss_pred CEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCC
Q 048618 76 SELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
++|++++|.+++ .| .+..+++|+.|++++|.+++..+ ..+..+++|+.+++++|++++.+|.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999986 44 68889999999999999985433 5788999999999999999887665
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=3.8e-16 Score=123.27 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=89.4
Q ss_pred CccEEECCCCCCc-ccCC---cccCCCCCCCEeeCcCCCCCC-----CcchhhcCCCCCCeeeccCCcCC----Cccchh
Q 048618 2 SLTKLILRGNQLT-GRLP---TEIGSFKELEYLDLSANRFNN-----SVPKSLGSLLKLHYLSLSNNQFV----QELPKE 68 (207)
Q Consensus 2 ~L~~L~l~~n~i~-~~~~---~~~~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~ 68 (207)
+|+.|++++|.++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 5677777777776 2233 355567777777777777652 22335667777777777777764 445666
Q ss_pred hhCCCCCCEEecCCCCCCCc----hhHHhhc--CCCCCEEeCCCCcCCC----Cccccc-cCCCCCCEEECCCCcCcccC
Q 048618 69 LEKLVQLSELDLSHNFLGGE----LLSQICN--MESLEKLNLSHNNLSG----SIPNCF-EGMHGLSVIDISDNQLQGPV 137 (207)
Q Consensus 69 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~ 137 (207)
+..+++|++|++++|.+++. ++..+.. +++|+.|++++|.++. .++..+ ..+++|+.|++++|++++..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777777777777777654 3344432 6777777777777775 355555 45677777777777776554
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=4.9e-15 Score=122.13 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=12.9
Q ss_pred CEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618 124 SVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 124 ~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~ 155 (207)
+.|++++|.++...+....++.+..+++.+|+
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 44444444444322222333444444444443
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=2.4e-16 Score=123.53 Aligned_cols=155 Identities=23% Similarity=0.237 Sum_probs=99.7
Q ss_pred CccEEECCCCCCcccCCcccCCC-----CCCCEeeCcCCCCCCCcchhhcC----C-CCCCeeeccCCcCCCccchhhh-
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGS----L-LKLHYLSLSNNQFVQELPKELE- 70 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~----l-~~L~~L~l~~n~l~~~~~~~~~- 70 (207)
+|+.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.. . ++|+.|++++|.+....+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67888888888887766666664 88888888888887666654433 3 7788888888887766554433
Q ss_pred ---C-CCCCCEEecCCCCCCCchh----HHhhcCC-CCCEEeCCCCcCCCCccc----cccCC-CCCCEEECCCCcCccc
Q 048618 71 ---K-LVQLSELDLSHNFLGGELL----SQICNME-SLEKLNLSHNNLSGSIPN----CFEGM-HGLSVIDISDNQLQGP 136 (207)
Q Consensus 71 ---~-l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~----~~~~~-~~L~~l~l~~n~~~~~ 136 (207)
. ..+|++|++++|.+++... ..+..++ +|+.|++++|.+++..+. .+... ++|+.|++++|.++..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 3 2478888888887765333 3334444 788888888877765543 33344 4777777777777652
Q ss_pred CCC----C-cc-cCCCCcccccCCCC
Q 048618 137 VPN----S-TA-FRNAPVEALEGNKE 156 (207)
Q Consensus 137 ~~~----~-~~-~~~~~~~~~~~n~~ 156 (207)
... . .. ...+..+++.+|..
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCC
Confidence 111 1 11 23566666666543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.1e-14 Score=120.33 Aligned_cols=122 Identities=28% Similarity=0.282 Sum_probs=107.0
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
.|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..|..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999996 566 999999999999999998 778899999999999999999987 56 78999999999999
Q ss_pred CCCCCCch-hHHhhcCCCCCEEeCCCCcCCCCccc---cccCCCCCCEEEC
Q 048618 82 HNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIPN---CFEGMHGLSVIDI 128 (207)
Q Consensus 82 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~l~l 128 (207)
+|.+++.. |..+..+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776 88999999999999999999876543 3445788998864
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.60 E-value=3.2e-15 Score=116.36 Aligned_cols=102 Identities=23% Similarity=0.244 Sum_probs=56.7
Q ss_pred EECCCC-CCcccCCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618 6 LILRGN-QLTGRLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83 (207)
Q Consensus 6 L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 83 (207)
++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|.++++|+.|+|++|++.+..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3444 55556666666654 5555555555556666666666666665555555555666666666666
Q ss_pred CCCCchhHHhhcCCCCCEEeCCCCcCC
Q 048618 84 FLGGELLSQICNMESLEKLNLSHNNLS 110 (207)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 110 (207)
++++..+..+..+. |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 65544443443333 555566555554
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=3e-14 Score=114.87 Aligned_cols=122 Identities=25% Similarity=0.306 Sum_probs=57.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch--------------
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK-------------- 67 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 67 (207)
+|+.|++++|.+++. + +.++++|++|++++|.+++. + +..+++|+.|++++|.+.+....
T Consensus 86 ~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS
T ss_pred CCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC
Confidence 455666666665543 2 55555555555555555542 2 44555555555555554432100
Q ss_pred -----hhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 68 -----ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 68 -----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
.+..+++|++|++++|.+++. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++++
T Consensus 160 ~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 160 KITKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred cccccccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 123344444444444444432 1 33444444444444444432 14444455555555555544
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.1e-15 Score=117.58 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=104.7
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCe-eeccCCcCCCccchhhhCCCCCCEE
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHY-LSLSNNQFVQELPKELEKLVQLSEL 78 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L 78 (207)
+++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.++ ..|.++++++. +.+.+|++....|+.|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 368999999999997777789999999999999999876554 56888888775 5667788988888889999999999
Q ss_pred ecCCCCCCCchhHHhhcCCC--------------------------CCEEeCCCCcCCCCccccccCCCCCCEEECCC-C
Q 048618 79 DLSHNFLGGELLSQICNMES--------------------------LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD-N 131 (207)
Q Consensus 79 ~l~~n~l~~~~~~~~~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~-n 131 (207)
++++|.+....+..+....+ ++.|++++|.++...+..+ ...+++.+++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 99999887544333333333 4445555555553222222 233455555543 3
Q ss_pred cCcccCCCC-cccCCCCcccccCCCCC
Q 048618 132 QLQGPVPNS-TAFRNAPVEALEGNKEL 157 (207)
Q Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~~n~~~ 157 (207)
.++...+.. ..+..+..+++.+|...
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC
Confidence 333322222 34556666666666543
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.57 E-value=3.4e-15 Score=116.15 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=96.6
Q ss_pred CEeeCcCC-CCCCCcchhhcCCCCCCeeeccC-CcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618 28 EYLDLSAN-RFNNSVPKSLGSLLKLHYLSLSN-NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105 (207)
Q Consensus 28 ~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 105 (207)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688888 887 5777 99999999999996 99988888899999999999999999998888899999999999999
Q ss_pred CCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 106 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+|.+++..+..+..++ |+.|++.+|++.|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977777777666 99999999999987653
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=6.7e-16 Score=124.30 Aligned_cols=156 Identities=21% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCccEEECCCCCCcccC-----CcccCCCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCCccchhhhC
Q 048618 1 NSLTKLILRGNQLTGRL-----PTEIGSFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQELPKELEK 71 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 71 (207)
++|+.|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|+.|++++|.+....+..+..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 36778888888776532 22223577788888888877643 4555666777888888877775443333322
Q ss_pred -----CCCCCEEecCCCCCCCc----hhHHhhcCCCCCEEeCCCCcCCCCccccccC-----CCCCCEEECCCCcCcc--
Q 048618 72 -----LVQLSELDLSHNFLGGE----LLSQICNMESLEKLNLSHNNLSGSIPNCFEG-----MHGLSVIDISDNQLQG-- 135 (207)
Q Consensus 72 -----l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~l~l~~n~~~~-- 135 (207)
.++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.++.
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 25777777777777654 3444555677777777777776543333322 4567777777777663
Q ss_pred --cCCCC-cccCCCCcccccCCCC
Q 048618 136 --PVPNS-TAFRNAPVEALEGNKE 156 (207)
Q Consensus 136 --~~~~~-~~~~~~~~~~~~~n~~ 156 (207)
.++.. ...+.+..+++.+|..
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHHHhCCCccEEECCCCCC
Confidence 22221 3345566666666643
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=6.5e-17 Score=116.38 Aligned_cols=128 Identities=23% Similarity=0.275 Sum_probs=109.2
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 80 (207)
++|+.|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 478999999999996 66 8899999999999999998 677778888999999999999986 44 6888899999999
Q ss_pred CCCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccc----------cccCCCCCCEEECCCCcCcc
Q 048618 81 SHNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPN----------CFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 81 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~l~l~~n~~~~ 135 (207)
++|.+++..+ ..+..+++|+.|++++|.+++..|. .+..+++|+.|| +++++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999986443 5788999999999999999766544 378899999887 677653
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=1.3e-14 Score=119.53 Aligned_cols=122 Identities=31% Similarity=0.392 Sum_probs=82.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 35555555555554 333 45666666666666664 333 45677777777777765 444 44 678888888
Q ss_pred CCCCCCchhHHhhcCCCC-------CEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618 82 HNFLGGELLSQICNMESL-------EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 140 (207)
+|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 88887 4444 433 66 99999999998 56777777999999999999998766543
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1.3e-13 Score=111.15 Aligned_cols=120 Identities=29% Similarity=0.390 Sum_probs=72.4
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|++|++++|.+++ +| .+.++++|++|++++|.+++ +|.. ..+|+.|++++|.+.+ +| .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 56666666666664 44 46667777777777776664 3322 2366666666666654 33 46666667777777
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
+|.+++ .|.. ..+|+.|++++|.++ .+|+ +..+++|+.|++++|++++
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 766654 2211 235666666666665 3443 5666667777777766664
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=3.3e-15 Score=120.24 Aligned_cols=155 Identities=22% Similarity=0.170 Sum_probs=116.1
Q ss_pred CccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCCcc-----hhhcCCCCCCeeeccCCcCCCc----cchh
Q 048618 2 SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVP-----KSLGSLLKLHYLSLSNNQFVQE----LPKE 68 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~ 68 (207)
+|+.|++++|.++.. ++..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 789999999998864 46777788999999999998875332 2233578999999999988764 5667
Q ss_pred hhCCCCCCEEecCCCCCCCchhHHhhc-----CCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCC
Q 048618 69 LEKLVQLSELDLSHNFLGGELLSQICN-----MESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 69 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.++...+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 777899999999999887655555443 26899999999998865 456677789999999999988754322
Q ss_pred Cc------ccCCCCcccccCCCC
Q 048618 140 ST------AFRNAPVEALEGNKE 156 (207)
Q Consensus 140 ~~------~~~~~~~~~~~~n~~ 156 (207)
.. ....+..+++.+|..
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCC
Confidence 10 134677777777753
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=3.7e-13 Score=108.43 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618 26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105 (207)
Q Consensus 26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 105 (207)
+|++|++++|.+.+ +| .|..+++|+.|++++|++.+ +|.. ..+|++|++++|.+++ .| .+..+++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 44555555555443 33 34555555555555555443 2221 1345555555555543 23 34555555555555
Q ss_pred CCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618 106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155 (207)
Q Consensus 106 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~ 155 (207)
+|.+++ +|.. .++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc
Confidence 555553 2221 135666666666655 33444445555555555553
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.49 E-value=2.1e-13 Score=113.62 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=17.7
Q ss_pred CCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 97 ESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 97 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 44444444444444 334444444444445555444443
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=8.9e-13 Score=109.83 Aligned_cols=77 Identities=29% Similarity=0.254 Sum_probs=47.1
Q ss_pred CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCccccc
Q 048618 73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152 (207)
Q Consensus 73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 152 (207)
++|+.|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|+.|++++|.++...+....++.+..+++.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 456666666666653 23 344667777777777663 333 4567778888888777433333556667777777
Q ss_pred CCCCC
Q 048618 153 GNKEL 157 (207)
Q Consensus 153 ~n~~~ 157 (207)
+|+..
T Consensus 293 ~N~l~ 297 (622)
T 3g06_A 293 GNPLS 297 (622)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=3.3e-14 Score=111.69 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=86.5
Q ss_pred CccEEECCCCCCcccCCcccCC-----CCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhh-----h
Q 048618 2 SLTKLILRGNQLTGRLPTEIGS-----FKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKEL-----E 70 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-----~ 70 (207)
+|+.|++++|.++......+.. ..+|++|+|++|.++......+. .+++|+.|++++|.+.......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 5677777777776543333322 25777777777776543333332 34566777777777654433332 2
Q ss_pred CCCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCCC--
Q 048618 71 KLVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPNS-- 140 (207)
Q Consensus 71 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~-- 140 (207)
..++|++|++++|.+++.. +..+...++|++|+|++|.++.. +.+.+...++|+.|++++|.++......
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 3456777777777665422 23334566677777777776542 2445555666777777777665321111
Q ss_pred ---cccCCCCcccccCCC
Q 048618 141 ---TAFRNAPVEALEGNK 155 (207)
Q Consensus 141 ---~~~~~~~~~~~~~n~ 155 (207)
...+.+..+++.+|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 122455566666654
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=4e-13 Score=104.68 Aligned_cols=137 Identities=24% Similarity=0.260 Sum_probs=101.0
Q ss_pred CCccEEECCCCCCcccCC-cccCCCCCCCE-eeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc------------
Q 048618 1 NSLTKLILRGNQLTGRLP-TEIGSFKELEY-LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP------------ 66 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~-L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------ 66 (207)
++|++|+|++|.+.+.+| .+|.+++++++ +.+..|++....+..|..+++|+.|++++|.+....+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 478899999998865444 57788888776 4556688887777888888889988888887654322
Q ss_pred -------------hhhhCC-CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC-CcCCCCccccccCCCCCCEEECCCC
Q 048618 67 -------------KELEKL-VQLSELDLSHNFLGGELLSQICNMESLEKLNLSH-NNLSGSIPNCFEGMHGLSVIDISDN 131 (207)
Q Consensus 67 -------------~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~l~l~~n 131 (207)
..|..+ ..++.|++++|.++...+.. ....+|+.+++.+ |.++...++.+..+++|+.|++++|
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 123333 25778999999998544443 3456899999975 6777566678899999999999999
Q ss_pred cCcccCC
Q 048618 132 QLQGPVP 138 (207)
Q Consensus 132 ~~~~~~~ 138 (207)
+++...+
T Consensus 213 ~l~~lp~ 219 (350)
T 4ay9_X 213 RIHSLPS 219 (350)
T ss_dssp CCCCCCS
T ss_pred CcCccCh
Confidence 9986544
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2e-14 Score=112.96 Aligned_cols=135 Identities=23% Similarity=0.252 Sum_probs=106.7
Q ss_pred CccEEECCCCCCcccCCccc-CCCCCCCEeeCcCCCCCCCcchhhc-----CCCCCCeeeccCCcCCCc----cchhhhC
Q 048618 2 SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLG-----SLLKLHYLSLSNNQFVQE----LPKELEK 71 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~ 71 (207)
+|+.|+|++|.++......+ ..+.+|+.|+|++|.++......+. ..++|+.|++++|.++.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 68999999999986544444 3467899999999999865555542 467899999999998653 4455578
Q ss_pred CCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCccc
Q 048618 72 LVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGP 136 (207)
Q Consensus 72 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~ 136 (207)
+++|++|++++|.+++.. ...+...++|+.|+|++|.++.. +...+...++|+.|++++|+++..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 899999999999997643 45566778999999999999853 345566789999999999998643
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=1.3e-12 Score=100.93 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCccEEECCCCCCc--------------------ccCCcccCC--------CCCCCEeeCcCCCCCCCcchhhcCCCCCC
Q 048618 1 NSLTKLILRGNQLT--------------------GRLPTEIGS--------FKELEYLDLSANRFNNSVPKSLGSLLKLH 52 (207)
Q Consensus 1 ~~L~~L~l~~n~i~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 52 (207)
++|+.|+|++|.+. .+.+.+|.+ +++|+.++|.+ .+..+.+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 36888888888887 334456677 88888888888 77767777888888888
Q ss_pred eeeccCCcCCCccchhhhC
Q 048618 53 YLSLSNNQFVQELPKELEK 71 (207)
Q Consensus 53 ~L~l~~n~l~~~~~~~~~~ 71 (207)
.+++..|.+....+..|..
T Consensus 128 ~l~l~~n~i~~i~~~aF~~ 146 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALAD 146 (329)
T ss_dssp EEEBCCSSCCEECTTSSCT
T ss_pred eEEcCCCCccccchhhhcC
Confidence 8888888764444443433
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=3.4e-12 Score=98.63 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=39.6
Q ss_pred CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeee
Q 048618 1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLS 55 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 55 (207)
++|+.|++.+ .++.+.+.+|.++++|+.+++.+|.+....+..|.+..++..+.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 3688889988 88878888999999999999999987655555555544444443
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=4.5e-12 Score=104.97 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=70.0
Q ss_pred CccEEECCCCCCcccCCcccCC-CCCCCEeeCc----CCCCCCC-----cchhhcCCCCCCeeeccCCc--CCCccchhh
Q 048618 2 SLTKLILRGNQLTGRLPTEIGS-FKELEYLDLS----ANRFNNS-----VPKSLGSLLKLHYLSLSNNQ--FVQELPKEL 69 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~ 69 (207)
+|+.|++..|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. ++......+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 3455555444544443333333 5555555553 3444432 22224445566666665432 333322222
Q ss_pred -hCCCCCCEEecCCCCCCCch-hHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcc
Q 048618 70 -EKLVQLSELDLSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 70 -~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
..+++|++|++++|.+++.. +..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|+++.
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 23566777777777665432 33345566777777777776533 23344556677777777777654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.08 E-value=8.4e-11 Score=97.38 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=38.7
Q ss_pred CCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCC----ccchhhhCCCCCCEEecCCCCCCCchhHHhh
Q 048618 23 SFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQ----ELPKELEKLVQLSELDLSHNFLGGELLSQIC 94 (207)
Q Consensus 23 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 94 (207)
++++|++|+|++|.+++. ++..+..+++|+.|++++|.+.+ .++..+.++++|+.|++++|.+.+ .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 455555555555554433 22223345555555555555541 223333445555555555555442 334444
Q ss_pred cCCCCCEEeCC
Q 048618 95 NMESLEKLNLS 105 (207)
Q Consensus 95 ~l~~L~~L~l~ 105 (207)
.+++|+.|+++
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 44444444443
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=1.9e-10 Score=81.59 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=90.3
Q ss_pred CcccCCCCCCCEeeCcCC-CCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCc
Q 048618 18 PTEIGSFKELEYLDLSAN-RFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGE 88 (207)
Q Consensus 18 ~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 88 (207)
...+...++|++|+|++| .+... +...+...++|+.|++++|.+... +.+.+...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345677899999999999 88753 334456678899999999998653 344556668899999999999865
Q ss_pred h----hHHhhcCCCCCEEeC--CCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618 89 L----LSQICNMESLEKLNL--SHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 89 ~----~~~~~~l~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~ 134 (207)
. ...+...++|++|++ ++|.+... +.+.+...++|+.|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 345556788999999 88999754 4456667789999999999875
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.01 E-value=2e-10 Score=81.44 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=87.3
Q ss_pred CCccEEECCCC-CCccc----CCcccCCCCCCCEeeCcCCCCCCCc----chhhcCCCCCCeeeccCCcCCCc----cch
Q 048618 1 NSLTKLILRGN-QLTGR----LPTEIGSFKELEYLDLSANRFNNSV----PKSLGSLLKLHYLSLSNNQFVQE----LPK 67 (207)
Q Consensus 1 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~ 67 (207)
++|+.|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|+.|++++|.+... +.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 46899999999 88753 4456677899999999999997543 34455668999999999999754 455
Q ss_pred hhhCCCCCCEEec--CCCCCCCchh----HHhhcCCCCCEEeCCCCcCC
Q 048618 68 ELEKLVQLSELDL--SHNFLGGELL----SQICNMESLEKLNLSHNNLS 110 (207)
Q Consensus 68 ~~~~l~~L~~L~l--~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~ 110 (207)
.+...++|++|++ ++|.+..... ..+...++|+.|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6677789999999 8899986543 34455689999999999885
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.01 E-value=8.8e-11 Score=97.25 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=70.0
Q ss_pred CccEEECCCCCCcccCCcccC-CCCCCCEeeCc--C----CCCCCCc-----chhhcCCCCCCeeeccCCcCCCccchhh
Q 048618 2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLS--A----NRFNNSV-----PKSLGSLLKLHYLSLSNNQFVQELPKEL 69 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 69 (207)
+|+.|++..|.+++.....+. .+++|+.|+++ + +.++... +..+..+++|+.|++++ .++......+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 344454444454433333332 35566666665 2 3333111 11134456666666655 4443333333
Q ss_pred hC-CCCCCEEecCCCCCCCchhHHh-hcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCc
Q 048618 70 EK-LVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 70 ~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~ 134 (207)
.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++... .....+++|+.|++++|+++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33 6667777777777665444444 456777777777777653322 23344667777777777663
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=6e-11 Score=98.22 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeecc--C----CcCCCc-----cchhhhCCCCCCEEecCCCCCCCchh
Q 048618 23 SFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLS--N----NQFVQE-----LPKELEKLVQLSELDLSHNFLGGELL 90 (207)
Q Consensus 23 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 90 (207)
++++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++.. .+..+..+++|+.|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 367777777777777655444454 47888888888 3 444421 223356788899999977 6666655
Q ss_pred HHhhc-CCCCCEEeCCCCcCCCCccccc-cCCCCCCEEECCCCcCcccCCC--CcccCCCCcccccCCCC
Q 048618 91 SQICN-MESLEKLNLSHNNLSGSIPNCF-EGMHGLSVIDISDNQLQGPVPN--STAFRNAPVEALEGNKE 156 (207)
Q Consensus 91 ~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~--~~~~~~~~~~~~~~n~~ 156 (207)
..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|+++..... ...++.+..+.+.+++.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 66654 8899999999999876555444 6789999999999998543221 23356677777766654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2e-08 Score=79.61 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=81.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC---------------------c
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN---------------------Q 60 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n---------------------~ 60 (207)
+|+.+++.+|.++.+...+|. +.+|+.+.+..+ +.......|.++++|+.+++..+ .
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~ 258 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG 258 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC
Confidence 577888887777755555554 466777766633 44455556666666666666543 2
Q ss_pred CCCccchhhhCCCCCCEEecCCCCCC-----CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 61 FVQELPKELEKLVQLSELDLSHNFLG-----GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 61 l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
+......+|.++++|+.+.+.+|.+. ......|..+.+|+.+.+.+ .++.....+|..+.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 33333445556666666666555443 23445555666666666653 354444556666666666666443 332
Q ss_pred cCCCCcccCCCCcccccCC
Q 048618 136 PVPNSTAFRNAPVEALEGN 154 (207)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~n 154 (207)
.....+..-.+..+.+.+|
T Consensus 337 I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp ECTTSSSSSCCCEEEECCS
T ss_pred EcHHhCCCCCCCEEEEcCC
Confidence 2222222114555555554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.9e-09 Score=84.26 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=65.3
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhc--CCCCCCeeeccC--CcCCCc-----cchhh--h
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG--SLLKLHYLSLSN--NQFVQE-----LPKEL--E 70 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~ 70 (207)
+|+.|.+++|.-. ..+. + .+++|+.|.+..|.+.......+. .+++|+.|+|+. +...+. +...+ .
T Consensus 173 ~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 173 LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 4555555555211 1222 2 255666666665555433222333 466677666642 111110 11112 1
Q ss_pred CCCCCCEEecCCCCCCCchhHHhh---cCCCCCEEeCCCCcCCCCc----cccccCCCCCCEEECCCCcCc
Q 048618 71 KLVQLSELDLSHNFLGGELLSQIC---NMESLEKLNLSHNNLSGSI----PNCFEGMHGLSVIDISDNQLQ 134 (207)
Q Consensus 71 ~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~ 134 (207)
.+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.++... +..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 356677777777666543333333 3566777777777666432 223344567777777777664
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.3e-08 Score=80.59 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=97.5
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcC---------------------CCCCCCcchhhcCCCCCCeeeccCCc
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSA---------------------NRFNNSVPKSLGSLLKLHYLSLSNNQ 60 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~---------------------n~i~~~~~~~~~~l~~L~~L~l~~n~ 60 (207)
+|+.+.+..+ ++.+...+|.++.+|+.+.+.. +.+.......|.++++|+.+++.++.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 4555566533 4445555666666666665543 23444556778899999999998887
Q ss_pred CC-----CccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618 61 FV-----QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG 135 (207)
Q Consensus 61 l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 135 (207)
+. ...+..|.++++|+.+.+.+ .++......|.++.+|+.+.+..+ ++.....+|..+ +|+.+++.+|....
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 64 45677899999999999994 577677788999999999999665 665677889999 99999999997654
Q ss_pred c
Q 048618 136 P 136 (207)
Q Consensus 136 ~ 136 (207)
.
T Consensus 360 l 360 (401)
T 4fdw_A 360 V 360 (401)
T ss_dssp C
T ss_pred c
Confidence 3
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.83 E-value=9.4e-10 Score=82.15 Aligned_cols=67 Identities=27% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCCCCCEEecCCCCCCC--chhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618 71 KLVQLSELDLSHNFLGG--ELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP 138 (207)
Q Consensus 71 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 138 (207)
++++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++. ..+.+..+ +|+.|++++|++++..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 45556666666666654 2234444556666666666666543 11222222 56666666666654433
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=3.1e-08 Score=73.96 Aligned_cols=106 Identities=28% Similarity=0.297 Sum_probs=73.5
Q ss_pred cCCCCCCCE--eeCcCCCCCCCcch----hhcCCCCCCeeeccCCcCCC--ccchhhhCCCCCCEEecCCCCCCCc-hhH
Q 048618 21 IGSFKELEY--LDLSANRFNNSVPK----SLGSLLKLHYLSLSNNQFVQ--ELPKELEKLVQLSELDLSHNFLGGE-LLS 91 (207)
Q Consensus 21 ~~~l~~L~~--L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~ 91 (207)
+...+.|.. ++++.|... ..+. ...++++|+.|+|++|++.+ .++..+..+++|+.|+|++|.+++. ...
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 334444554 556666432 2222 22467899999999999987 3457778899999999999999865 122
Q ss_pred HhhcCCCCCEEeCCCCcCCCCcc-------ccccCCCCCCEEEC
Q 048618 92 QICNMESLEKLNLSHNNLSGSIP-------NCFEGMHGLSVIDI 128 (207)
Q Consensus 92 ~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~l~l 128 (207)
.+..+ +|+.|+|++|.+++..| ..+..+++|+.||-
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 33334 89999999999986544 34677899987763
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=4.7e-08 Score=68.19 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=35.6
Q ss_pred CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-CCCccchhhhCC----CCCCEEecCCCC-CCCchhHHhhcCCCC
Q 048618 26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-FVQELPKELEKL----VQLSELDLSHNF-LGGELLSQICNMESL 99 (207)
Q Consensus 26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L 99 (207)
.|+.|++++|.++...-..+..+++|+.|++++|. ++...-..+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444333334444555555555542 332222222222 234555554442 444333444444445
Q ss_pred CEEeCCCC
Q 048618 100 EKLNLSHN 107 (207)
Q Consensus 100 ~~L~l~~n 107 (207)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.9e-08 Score=77.48 Aligned_cols=130 Identities=21% Similarity=0.254 Sum_probs=90.4
Q ss_pred CCccEEECCCCCCcccCCcccC--CCCCCCEeeCcC--CCCCCC-----cchhh--cCCCCCCeeeccCCcCCCccchhh
Q 048618 1 NSLTKLILRGNQLTGRLPTEIG--SFKELEYLDLSA--NRFNNS-----VPKSL--GSLLKLHYLSLSNNQFVQELPKEL 69 (207)
Q Consensus 1 ~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~--n~i~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~ 69 (207)
++|+.|++..+.++......+. .+++|+.|+|+. +...+. +...+ ..+++|+.|++++|.+....+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 4789999999888754444443 789999999863 221111 11223 247899999999998865444443
Q ss_pred h---CCCCCCEEecCCCCCCCchhHHh----hcCCCCCEEeCCCCcCCCCccccccC-CCCCCEEECCCCc
Q 048618 70 E---KLVQLSELDLSHNFLGGELLSQI----CNMESLEKLNLSHNNLSGSIPNCFEG-MHGLSVIDISDNQ 132 (207)
Q Consensus 70 ~---~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~l~l~~n~ 132 (207)
. .+++|++|+++.|.+.+..+..+ ..+++|+.|++++|.++......+.. + ...+++++++
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3 47899999999999986544333 45799999999999998655454543 3 3557887776
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=3.7e-08 Score=68.72 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCC-CCCchhHHhhcC----CCCCEEeCCCCc-CCCCccccccCCCC
Q 048618 49 LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNF-LGGELLSQICNM----ESLEKLNLSHNN-LSGSIPNCFEGMHG 122 (207)
Q Consensus 49 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 122 (207)
.+|+.||++++.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +|...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999887666677899999999999995 777666667664 479999999985 88665566788999
Q ss_pred CCEEECCCCcC
Q 048618 123 LSVIDISDNQL 133 (207)
Q Consensus 123 L~~l~l~~n~~ 133 (207)
|+.|++++++-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.24 E-value=1.9e-06 Score=61.17 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=78.6
Q ss_pred cCCCCCCCEeeCcCC-CCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCchhH
Q 048618 21 IGSFKELEYLDLSAN-RFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGELLS 91 (207)
Q Consensus 21 ~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~ 91 (207)
+.+-+.|++|+|++| .|... +...+..-+.|+.|+|++|.+... +.+.+..-..|++|+|++|.+.+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 355678889999885 66542 344456667889999999988643 444555667899999999988765443
Q ss_pred ----HhhcCCCCCEEeCCCC---cCCC----CccccccCCCCCCEEECCCCcC
Q 048618 92 ----QICNMESLEKLNLSHN---NLSG----SIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 92 ----~~~~l~~L~~L~l~~n---~l~~----~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
.+..-..|+.|+|++| .+.. .+.+.+...++|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3444567999999765 3332 2445677778899998887754
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.23 E-value=7e-06 Score=64.71 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=92.0
Q ss_pred cccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHh
Q 048618 14 TGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQI 93 (207)
Q Consensus 14 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 93 (207)
+.+...+|.++..|+.+.+..+... .....|.+...|+.+.+. +.+.......|.++.+|+.+.+..+ ++.....+|
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred eEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 3345567888999999998766543 666778889999999986 4466666778999999999999765 665667788
Q ss_pred hcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618 94 CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
.++.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 89999999999755 6656678999999999999988754
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=6.3e-06 Score=64.51 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=46.3
Q ss_pred cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCC
Q 048618 19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES 98 (207)
Q Consensus 19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 98 (207)
.++..+.+++.+.+..+ +.......|.+...|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444445555544332 22233334444445555544433 33333334444444444444332 22233334444444
Q ss_pred CCEEeCCCCcCCCCccccccCCCCCCEEECC
Q 048618 99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129 (207)
Q Consensus 99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~ 129 (207)
|+.+.+.++.++.....+|.++.+|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcC
Confidence 5555544444443334444444445544443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=6.5e-06 Score=64.89 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=91.1
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.+.+..+... +...+|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++.....+|.++.+|+.+.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 4667777665443 667889999999999996 4455567778999999999999764 666667889999999999997
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 133 (207)
.+ ++.....+|.++.+|+.+++.++... -..+....+|+.+.+..+.+
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 55 66677789999999999999887543 24566778888888776644
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=3.2e-06 Score=60.04 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=81.6
Q ss_pred CCccEEECCCC-CCccc----CCcccCCCCCCCEeeCcCCCCCCCc----chhhcCCCCCCeeeccCCcCCCc----cch
Q 048618 1 NSLTKLILRGN-QLTGR----LPTEIGSFKELEYLDLSANRFNNSV----PKSLGSLLKLHYLSLSNNQFVQE----LPK 67 (207)
Q Consensus 1 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~ 67 (207)
+.|+.|+|++| .|... +.+++..-.+|+.|+|++|.+.... ...+..-+.|+.|+|++|.+... +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 36899999996 88743 4566777899999999999998543 34455668899999999999754 334
Q ss_pred hhhCCCCCCEEecCCC---CCCCc----hhHHhhcCCCCCEEeCCCCcCC
Q 048618 68 ELEKLVQLSELDLSHN---FLGGE----LLSQICNMESLEKLNLSHNNLS 110 (207)
Q Consensus 68 ~~~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 110 (207)
.+..-..|++|+|++| .+... +...+..-+.|+.|+++.|.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4555678999999876 34432 3345566789999999877653
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=1.5e-05 Score=62.77 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=59.6
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+|+.+.+... ++.+...++.++..++.+.+..+... .....|.....++.+....+.+ ....|..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence 3455555433 23344566777777777777665432 3444455555555554443322 12334445555555554
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 131 (207)
.+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 33 33333344445555555555432 33333444555555555555433
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=1.4e-05 Score=62.45 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=99.9
Q ss_pred CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618 2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS 81 (207)
Q Consensus 2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 81 (207)
+++.+.+..+ +..+...++.++..|+.+.+..+ +.......|.+...|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence 4556666544 44466778899999999999766 55566778889999999998654 555666789999999999999
Q ss_pred CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618 82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131 (207)
Q Consensus 82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 131 (207)
++.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 98888777788999999999999765 66566778999999998888654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.95 E-value=1.6e-05 Score=52.67 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred EEecCCCCCC-CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618 77 ELDLSHNFLG-GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN 139 (207)
Q Consensus 77 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 139 (207)
.++.+++.++ ..+|..+ ..+++.|+|++|.|+...+..|..+++|+.|++++|++.|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5666676665 1233221 23578888888888876677788888888888888888877664
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.00028 Score=55.53 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=68.2
Q ss_pred ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
++.+.+..+... ....+|..+..++.+......+ ....|....+|+.+.+..+ +......+|.++.+|+.+++..
T Consensus 255 l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 255 LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 444555444332 4455566666666666554432 2234556666666666543 4444455566666666666654
Q ss_pred CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618 83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 130 (207)
Q Consensus 83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 130 (207)
+ ++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3 44444556666666666666555 4444455666666666666643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.41 E-value=0.00045 Score=45.64 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=15.5
Q ss_pred CCeeeccCCcCCCccchhhhCCCCCCEEecCCCC
Q 048618 51 LHYLSLSNNQFVQELPKELEKLVQLSELDLSHNF 84 (207)
Q Consensus 51 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 84 (207)
|+.|+|++|+++...++.|..+++|+.|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444444444444444444444444443
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.09 E-value=0.032 Score=28.96 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=3.0
Q ss_pred ehHHHHH
Q 048618 184 IVFPVLG 190 (207)
Q Consensus 184 ~~~~~~~ 190 (207)
|.+++++
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 4444443
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.75 E-value=0.029 Score=28.16 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=7.1
Q ss_pred HHHHHHhhhhcC
Q 048618 196 MALIAIFILRKR 207 (207)
Q Consensus 196 ~~~~~~~~~~rr 207 (207)
++.+++|+||||
T Consensus 27 i~~l~~~~~rrr 38 (38)
T 2k1k_A 27 LLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHeecC
Confidence 334456777776
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.55 E-value=0.042 Score=28.41 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.2
Q ss_pred HHHhhhhcC
Q 048618 199 IAIFILRKR 207 (207)
Q Consensus 199 ~~~~~~~rr 207 (207)
+.+|++|||
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 344555543
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=92.42 E-value=0.11 Score=26.38 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=9.8
Q ss_pred eehHHHHHHHHHHH-HH-HHHhhhhcC
Q 048618 183 AIVFPVLGAVFVSM-AL-IAIFILRKR 207 (207)
Q Consensus 183 ~~~~~~~~~~~~~~-~~-~~~~~~~rr 207 (207)
.+++++++.+++++ ++ +.++++|||
T Consensus 14 ~I~~~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 14 AVIGGVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred EEEeehhHHHHHHHHHHHHheeEeeec
Confidence 34444444333333 33 334444443
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.01 E-value=0.15 Score=26.30 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=3.7
Q ss_pred eehHHHHH
Q 048618 183 AIVFPVLG 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
.|.+++++
T Consensus 11 aIA~gVVg 18 (44)
T 2l2t_A 11 LIAAGVIG 18 (44)
T ss_dssp HHHHHHHH
T ss_pred eEEEeehH
Confidence 34444444
No 170
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.95 E-value=0.14 Score=26.49 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=11.6
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
..+++++++++++++..++ +|++||
T Consensus 13 A~gVVgGv~~v~ii~~~~~-~~~RRR 37 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFA-VYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred EEeehHHHHHHHHHHHHHH-HHhhhh
Confidence 4455555555554443333 333333
No 171
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=88.06 E-value=0.53 Score=24.25 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=6.8
Q ss_pred ehHHHHHHHHHHHHHHHHh
Q 048618 184 IVFPVLGAVFVSMALIAIF 202 (207)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ 202 (207)
+++++++ +++++++...+
T Consensus 14 Ia~~vVG-vll~vi~~l~~ 31 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVF 31 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHH
Confidence 3343443 33333333333
No 172
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=86.91 E-value=0.18 Score=24.57 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=4.8
Q ss_pred HHHhhhhcC
Q 048618 199 IAIFILRKR 207 (207)
Q Consensus 199 ~~~~~~~rr 207 (207)
+++|++|||
T Consensus 27 ~~~~iRRr~ 35 (35)
T 1iij_A 27 VGILIKRRR 35 (35)
T ss_dssp TTHHHHHCC
T ss_pred hheEEeecC
Confidence 345555554
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.94 E-value=3.5 Score=25.36 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC
Q 048618 10 GNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59 (207)
Q Consensus 10 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 59 (207)
+..++.+-..+|.++..|+.+.+..+ ++.+....|.+..+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555556667777777777776654 33355566777777777666543
No 174
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=79.94 E-value=2.1 Score=20.51 Aligned_cols=6 Identities=0% Similarity=-0.053 Sum_probs=2.4
Q ss_pred HHHHhh
Q 048618 198 LIAIFI 203 (207)
Q Consensus 198 ~~~~~~ 203 (207)
.+.+|+
T Consensus 26 tflywr 31 (40)
T 2l9u_A 26 TFLYWR 31 (40)
T ss_dssp HHHHHH
T ss_pred eeEEEc
Confidence 333443
No 175
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=75.26 E-value=3.2 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=15.8
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
..+|+.+.+.+.++...+.++..|||
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~QyrR 31 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQYKR 31 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHTCC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 45677777767666666666666665
No 176
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.00 E-value=5.5 Score=24.43 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=27.6
Q ss_pred CCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618 36 RFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82 (207)
Q Consensus 36 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 82 (207)
.++.+....|.+..+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444455556666677777666544 3444555666666666666654
No 177
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=73.31 E-value=0.88 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhcC
Q 048618 193 FVSMALIAIFILRKR 207 (207)
Q Consensus 193 ~~~~~~~~~~~~~rr 207 (207)
+++.+++.++.|++|
T Consensus 21 ~iisLIiLi~~w~qK 35 (39)
T 2l6w_A 21 TIISLIILIMLWQKK 35 (39)
Confidence 333444456666654
No 178
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=67.78 E-value=5.9 Score=19.24 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=12.9
Q ss_pred eehHHHHHHHHHHHHHHHHhhhhc
Q 048618 183 AIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
+|+.+.+-+.++...+.++.-|||
T Consensus 8 GIVlGlipvtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555554
No 179
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=68.62 E-value=1.3 Score=22.44 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
++++++..++++..+..|||
T Consensus 24 v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 24 VGGVVIATVIVITLVMLKKK 43 (43)
Confidence 33344444444444445554
No 180
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=63.13 E-value=11 Score=17.94 Aligned_cols=7 Identities=29% Similarity=0.823 Sum_probs=2.9
Q ss_pred HHhhhhc
Q 048618 200 AIFILRK 206 (207)
Q Consensus 200 ~~~~~~r 206 (207)
.+|+++|
T Consensus 26 ~vy~~~r 32 (33)
T 2l34_A 26 AVYFLGR 32 (33)
T ss_dssp HHHHHCC
T ss_pred HHhheec
Confidence 3444443
No 181
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=62.27 E-value=8 Score=22.02 Aligned_cols=26 Identities=0% Similarity=0.158 Sum_probs=13.3
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
...++++.++++.+.+++..+|+|-|
T Consensus 14 vvtv~viliavaalg~li~gcwcylr 39 (90)
T 1zza_A 14 VVTVIVILIAIAALGALILGCWCYLR 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eEEehhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555666676643
No 182
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=59.63 E-value=1.9 Score=32.61 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHhhhhc
Q 048618 200 AIFILRK 206 (207)
Q Consensus 200 ~~~~~~r 206 (207)
++|++||
T Consensus 302 ~~~~~~~ 308 (315)
T 1cd1_A 302 YYIWRRR 308 (315)
T ss_dssp -------
T ss_pred Hhheehh
Confidence 4455554
No 183
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.74 E-value=11 Score=22.09 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=4.4
Q ss_pred EeehHHHHHH
Q 048618 182 FAIVFPVLGA 191 (207)
Q Consensus 182 ~~~~~~~~~~ 191 (207)
..+++++++.
T Consensus 11 ~~Iv~gvi~g 20 (79)
T 2knc_B 11 LVVLLSVMGA 20 (79)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 4444444443
No 184
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=51.25 E-value=12 Score=18.43 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 048618 188 VLGAVFVSMALIAIFILRKR 207 (207)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~rr 207 (207)
.++++.+.+.+-+.|.|.||
T Consensus 23 gvgvlal~iglsaaw~ya~r 42 (46)
T 1hgv_A 23 GVGVLALAIGLSAAWKYAKR 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhHHHHHHHHHH
Confidence 33444444555566766554
No 185
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=38.28 E-value=29 Score=22.29 Aligned_cols=24 Identities=8% Similarity=0.121 Sum_probs=12.4
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhh
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFIL 204 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
.++|.+.+.-..++++.+++-+.+
T Consensus 53 ylYIL~vmgffgff~~GImLsYiR 76 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIR 76 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555444555555544444
No 186
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=35.47 E-value=7.9 Score=29.72 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHhhhh
Q 048618 200 AIFILR 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
++++||
T Consensus 304 ~~~~~~ 309 (348)
T 1s7q_A 304 AFVMKM 309 (348)
T ss_dssp ------
T ss_pred EEEEEE
Confidence 344555
No 187
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.28 E-value=29 Score=26.30 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhhc
Q 048618 191 AVFVSMALIAIFILRK 206 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~r 206 (207)
+.++++++.++|++||
T Consensus 321 ~m~~~~~~~~~~fkrk 336 (339)
T 4ev6_A 321 LMVVIIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333334444444444
No 188
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.43 E-value=45 Score=14.89 Aligned_cols=10 Identities=0% Similarity=0.428 Sum_probs=4.8
Q ss_pred HHHHHHhhhh
Q 048618 196 MALIAIFILR 205 (207)
Q Consensus 196 ~~~~~~~~~~ 205 (207)
++.+.+|+++
T Consensus 18 flafgfwlfk 27 (32)
T 2lx0_A 18 FLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344555543
No 189
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=29.37 E-value=13 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=0.0
Q ss_pred eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618 181 WFAIVFPVLGAVFVSMALIAIFILRK 206 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~r 206 (207)
|..++.+.+..+++.++++++| ||+
T Consensus 215 ~~~~~l~al~slvigf~~ga~~-wk~ 239 (273)
T 1scf_A 215 WAAMALPALFSLIIGFAFGALY-WKK 239 (273)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-hcc
Confidence 6666665555555555555555 554
No 190
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.94 E-value=32 Score=26.39 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 048618 189 LGAVFVSMALIAIFILRK 206 (207)
Q Consensus 189 ~~~~~~~~~~~~~~~~~r 206 (207)
+++.++++++.++|++||
T Consensus 343 l~~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 343 LAVMGVIAVIMVVYFKKK 360 (363)
T ss_dssp HHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333333444444444444
No 191
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.86 E-value=69 Score=17.12 Aligned_cols=14 Identities=14% Similarity=0.608 Sum_probs=5.3
Q ss_pred eEeehHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFV 194 (207)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (207)
|..++.++++.+++
T Consensus 10 WiIi~svl~GLLLL 23 (54)
T 2l8s_A 10 WVILLSAFAGLLLL 23 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 192
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=26.96 E-value=41 Score=18.83 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=8.6
Q ss_pred EeehHHHHHHHHHHHHHHH
Q 048618 182 FAIVFPVLGAVFVSMALIA 200 (207)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~ 200 (207)
+.+.+-+.+++++++.+++
T Consensus 17 LRigGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred heecchhhHHHHHHHHHHH
Confidence 4444444444444444443
No 193
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=26.82 E-value=62 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=5.2
Q ss_pred eEeehHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFV 194 (207)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (207)
|..++..+++..+.
T Consensus 11 wiIi~s~l~GLllL 24 (42)
T 2k1a_A 11 WWVLVGVLGGLLLL 24 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 194
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=25.45 E-value=62 Score=16.51 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=3.6
Q ss_pred HHHHHhhhh
Q 048618 197 ALIAIFILR 205 (207)
Q Consensus 197 ~~~~~~~~~ 205 (207)
.+.++|+++
T Consensus 35 t~ya~~r~~ 43 (46)
T 1waz_A 35 TIYAIQRKR 43 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344443
No 195
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=25.23 E-value=70 Score=15.73 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 048618 192 VFVSMALIAIF 202 (207)
Q Consensus 192 ~~~~~~~~~~~ 202 (207)
+...++++.+.
T Consensus 23 iIG~IllI~y~ 33 (40)
T 1afo_A 23 VIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 196
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.12 E-value=82 Score=16.83 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=5.9
Q ss_pred eEeehHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVS 195 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (207)
|..++..+++.+++.
T Consensus 13 wiIi~svl~GLllL~ 27 (54)
T 2knc_A 13 WWVLVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444333333333
No 197
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.05 E-value=41 Score=19.23 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=10.0
Q ss_pred eEeehHHHHHHHHHHHHHHHH
Q 048618 181 WFAIVFPVLGAVFVSMALIAI 201 (207)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ 201 (207)
.+.+.+-+.+++++++.++++
T Consensus 18 tLRigGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HheeccchhHHHHHHHHHHHH
Confidence 344445444455555444443
No 198
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=24.93 E-value=41 Score=24.66 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhhc
Q 048618 191 AVFVSMALIAIFILRK 206 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~r 206 (207)
+++++++.+..|+++|
T Consensus 235 l~fL~il~~l~y~~kr 250 (263)
T 2yiu_B 235 VIFLIVLAALLYLTNK 250 (263)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333444443
No 199
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.21 E-value=90 Score=17.66 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=7.0
Q ss_pred eehHHHHHHHHHHHHHH
Q 048618 183 AIVFPVLGAVFVSMALI 199 (207)
Q Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (207)
.+.+-+.+++++++.++
T Consensus 17 RiGGLifA~vLfi~GI~ 33 (72)
T 2jo1_A 17 QIGGLVIAGILFILGIL 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHH
Confidence 33444444444444433
No 200
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=23.05 E-value=86 Score=18.30 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhhc
Q 048618 193 FVSMALIAIFILRK 206 (207)
Q Consensus 193 ~~~~~~~~~~~~~r 206 (207)
.++.+++.+.+.|+
T Consensus 32 s~llliil~lltkk 45 (80)
T 2k9p_A 32 AALTLIVVWITSRS 45 (80)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcc
Confidence 33333333444333
No 201
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=22.82 E-value=48 Score=23.97 Aligned_cols=16 Identities=6% Similarity=0.451 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhhc
Q 048618 191 AVFVSMALIAIFILRK 206 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~r 206 (207)
+++++++.+..|+++|
T Consensus 209 l~fL~il~~l~y~~kr 224 (241)
T 1pp9_D 209 LLMMGLLLPLVYAMKR 224 (241)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333444443
No 202
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=22.78 E-value=48 Score=24.08 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhhc
Q 048618 193 FVSMALIAIFILRK 206 (207)
Q Consensus 193 ~~~~~~~~~~~~~r 206 (207)
+++++.+..|+++|
T Consensus 215 fL~il~~l~y~~kr 228 (248)
T 3cx5_D 215 ILSSLYLLSIWVKK 228 (248)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444433
No 203
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=21.96 E-value=89 Score=15.70 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=4.1
Q ss_pred EeehHHHHHH
Q 048618 182 FAIVFPVLGA 191 (207)
Q Consensus 182 ~~~~~~~~~~ 191 (207)
..+++++++.
T Consensus 10 ~~Iv~gvi~~ 19 (43)
T 2k9j_B 10 LVVLLSVMGA 19 (43)
T ss_dssp HHHHHHHHHH
T ss_pred eehHHHHHHH
Confidence 3444444443
No 204
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=20.97 E-value=55 Score=23.93 Aligned_cols=13 Identities=0% Similarity=0.396 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhhh
Q 048618 193 FVSMALIAIFILR 205 (207)
Q Consensus 193 ~~~~~~~~~~~~~ 205 (207)
+++++.+..|+++
T Consensus 234 fL~il~~l~y~~k 246 (258)
T 1zrt_D 234 MLGLLSVMLYLTN 246 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333334333
No 205
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=20.02 E-value=59 Score=23.92 Aligned_cols=11 Identities=0% Similarity=0.347 Sum_probs=4.1
Q ss_pred HHHHHHHhhhh
Q 048618 195 SMALIAIFILR 205 (207)
Q Consensus 195 ~~~~~~~~~~~ 205 (207)
+++.+..|+++
T Consensus 238 ~il~~l~y~~k 248 (269)
T 2qjy_B 238 TVLSVLLYLTN 248 (269)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333334333
Done!