BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048621
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 180/429 (41%), Positives = 249/429 (58%), Gaps = 31/429 (7%)
Query: 31 RFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSG 90
R LK F FG P Y R+PGRVN+IGEHIDY GYSVLPMA+ QD ++A+ +
Sbjct: 38 RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKT- 96
Query: 91 ETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPP 150
L++AN + Y + A + ++D W +YF+CG KG E+ L
Sbjct: 97 ---YALQLANTNPLYPDFSTSAN-NIQIDKTKPLWHNYFLCGLKGIQEHFGLSNL----- 147
Query: 151 VGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSG 210
G++ LVDG +P SGLSSS+A VC + + + G + K E+A++ + ERYIG + G
Sbjct: 148 TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGG 207
Query: 211 GMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVV 270
GMDQ+IS +A+ G A+LI+F+P+RATDV+LP+G FVIA+S E KA T +++N RV+
Sbjct: 208 GMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVM 265
Query: 271 ECRLAAIVLGIKLGMKPQEAISKVKTLSDVEG-LCVAFAGKNGSDDPFLAVKEFLHEEPY 329
ECRLAA +L ++ KV L +V+ L ++ ++ L ++ LH EPY
Sbjct: 266 ECRLAAKLLAKYKSLQ----WDKVLRLEEVQAKLGISL------EEMLLVTEDALHPEPY 315
Query: 330 MAXXXXXXXXXXLXXXXXXXXX--XLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYS 387
L DVL +KL+QRA HVYSEA RV FK
Sbjct: 316 NPEEICRCLGISLEELRTQILSPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE 371
Query: 388 NLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAV 447
+ E+ ++ LG+LMN SH SC +YECSCPEL++LV +CR GA G+RLTGAGWGGC V
Sbjct: 372 --APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 429
Query: 448 VLVKESIVP 456
+V +P
Sbjct: 430 SMVPADKLP 438
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 218/445 (48%), Gaps = 37/445 (8%)
Query: 39 FIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKI 98
F Q + PD ARSPGRVNLIGEHIDY +SVLP+AI D + A++ + E + +
Sbjct: 15 FFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVK--ILDEKNPSITL 72
Query: 99 ANVSDKYSLCTYPAEPD---QELDLKHHQWGHYFICGYKGFYEYVKA---KGLDVGPPVG 152
N K++ + D +D +W +YF CG + Y+K + + P VG
Sbjct: 73 TNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVG 132
Query: 153 LDILVDGIVPTGSGLSSSAAFVCSSTIALMAAF---GVEVPKKEIAQLTCECERYIGAQS 209
I +PTG GLSS AF C++ +A + A ++ KK++ ++T E Y+G +
Sbjct: 133 AQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNN 190
Query: 210 GGMDQAISIMAKSGFAELIDFNP-IRATDVQLPAGG----TFVIAHSLAESLKAVTAATN 264
GGMDQA S+ + A ++F P ++AT + P +FVIA++L +S K TA TN
Sbjct: 191 GGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTN 250
Query: 265 YNNRVVECRLAAIVLGIK----LGMKPQEAISKVKTLSDV--------EGLCVAFAGKNG 312
YN RV+E +AA L + L + S+ L D E + G G
Sbjct: 251 YNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIG 310
Query: 313 SD-DPFLAVKEFLHEEPYMAXXXXXXXXXXLXXXXXXXXXXLDVLNA----AKHYKLHQR 367
+ + L + + + E D L + KL+QR
Sbjct: 311 TGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQR 370
Query: 368 AAHVYSEAKRVY-AFKDTVYSNL-SDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVT 425
A HVYSE+ RV A K + +DED G LMN+S SC LYECSC E ++ +
Sbjct: 371 AKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICS 430
Query: 426 VCRDNGALGARLTGAGWGGCAVVLV 450
+ NG+ G+RLTGAGWGGC + LV
Sbjct: 431 IALANGSFGSRLTGAGWGGCTIHLV 455
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 218/445 (48%), Gaps = 37/445 (8%)
Query: 39 FIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKI 98
F Q + PD ARSPGRVNLIGEHIDY +SVLP+AI D + A++ + E + +
Sbjct: 30 FFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVK--ILDEKNPSITL 87
Query: 99 ANVSDKYSLCTYPAEPD---QELDLKHHQWGHYFICGYKGFYEYVKA---KGLDVGPPVG 152
N K++ + D +D +W +YF CG + Y+K + + P VG
Sbjct: 88 TNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVG 147
Query: 153 LDILVDGIVPTGSGLSSSAAFVCSSTIALMAAF---GVEVPKKEIAQLTCECERYIGAQS 209
I +PTG GLSS AF C++ +A + A ++ KK++ ++T E Y+G +
Sbjct: 148 AQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNN 205
Query: 210 GGMDQAISIMAKSGFAELIDFNP-IRATDVQLPAGG----TFVIAHSLAESLKAVTAATN 264
GGMDQA S+ + A ++F P ++AT + P +FVIA++L +S K TA TN
Sbjct: 206 GGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTN 265
Query: 265 YNNRVVECRLAAIVLGIK----LGMKPQEAISKVKTLSDV--------EGLCVAFAGKNG 312
YN RV+E +AA L + L + S+ L D E + G G
Sbjct: 266 YNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIG 325
Query: 313 SD-DPFLAVKEFLHEEPYMAXXXXXXXXXXLXXXXXXXXXXLDVLNA----AKHYKLHQR 367
+ + L + + + E D L + KL+QR
Sbjct: 326 TGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQR 385
Query: 368 AAHVYSEAKRVY-AFKDTVYSNL-SDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVT 425
A HVYSE+ RV A K + +DED G LMN+S SC LYECSC E ++ +
Sbjct: 386 AKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICS 445
Query: 426 VCRDNGALGARLTGAGWGGCAVVLV 450
+ NG+ G+RLTGAGWGGC + LV
Sbjct: 446 IALANGSFGSRLTGAGWGGCTIHLV 470
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 144/262 (54%), Gaps = 16/262 (6%)
Query: 38 KFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLK 97
KFI + PD ARSPGRVNLIGEHIDY +SVLP+AI D + A++ V E +
Sbjct: 55 KFISAYDAKPDFVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVK--VLNEKNPSIT 112
Query: 98 IANVSDKYSLCTYPAEPDQE---LDLKHHQWGHYFICGYKGFYEYVKA---KGLDVGPPV 151
+ N K++ + D +D W +YF CG + ++K + P
Sbjct: 113 LINADPKFAQRKFDLPLDGSYVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLA 172
Query: 152 GLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAF---GVEVPKKEIAQLTCECERYIGAQ 208
GL + +G VPTGSGLSSSAAF+C+ +A++ A G + K+ + ++T E Y+G
Sbjct: 173 GLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVN 232
Query: 209 SGGMDQAISIMAKSGFAELIDFNP-IRATDVQLPAGG----TFVIAHSLAESLKAVTAAT 263
+GGMDQA S+ + A ++F P ++AT + P +FVIA++L S K TA T
Sbjct: 233 NGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPT 292
Query: 264 NYNNRVVECRLAAIVLGIKLGM 285
NYN RVVE AA VL G+
Sbjct: 293 NYNLRVVEVTTAANVLAATYGV 314
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 363 KLHQRAAHVYSEAKRVY-AFK-DTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPEL 420
KL+QRA HVYSE+ RV A K T S +DED ++ G LMN+S SC LYECSCPE+
Sbjct: 409 KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEI 468
Query: 421 EELVTVCRDNGALGARLTGAGWGGCAVVLV 450
+++ ++ NG+ G+RLTGAGWGGC V LV
Sbjct: 469 DKICSIALSNGSYGSRLTGAGWGGCTVHLV 498
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 187/426 (43%), Gaps = 91/426 (21%)
Query: 35 LKSKFIQIFGHAPDV-YARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETE 93
L KF ++FG +V Y SPGR+NLIGEH DY G V P +I T R E +
Sbjct: 34 LTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLR---EDK 90
Query: 94 KVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGL 153
KV + K + + + ++ D W +Y KG +K G ++ G
Sbjct: 91 KVKLYSENFPKLGVIEFDLDEVEKKD--GELWSNYV----KGMIVMLKGAGYEIDK--GF 142
Query: 154 DILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGAQSGGM 212
++L+ G +PT SGLSSSA+ + L F + VP+ E+ QL + E YIG SG +
Sbjct: 143 ELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGIL 202
Query: 213 DQ-AISIMAKSGFAEL-----IDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYN 266
DQ AI GF E+ +D N ++ V + ++ + + +A+T + YN
Sbjct: 203 DQFAI------GFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKP-RALT-ESKYN 254
Query: 267 NRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHE 326
R E R EA+ +++T D++ L S++ F A + + +
Sbjct: 255 ERFAETR---------------EALKRMQTRLDIQSLGEL------SNEEFDANTDLIGD 293
Query: 327 EPYMAXXXXXXXXXXLXXXXXXXXXXLDVLNAAKHYKLHQRAAH-VYSEAKRVYAFKDTV 385
E L +RA H VY + A K V
Sbjct: 294 ET-----------------------------------LIKRARHAVYENNRTKIAQKAFV 318
Query: 386 YSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELV-TVCRDNGALGARLTGAGWGG 444
NL+ + G+L+N SH S YE + EL+ L T + G LGAR+TGAG+GG
Sbjct: 319 AGNLT------KFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGG 372
Query: 445 CAVVLV 450
CA+ LV
Sbjct: 373 CAIALV 378
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 151/393 (38%), Gaps = 84/393 (21%)
Query: 36 KSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKV 95
+ F + FG P++ +PGRVNLIGEH DY VLP A+ T++ G +
Sbjct: 24 RRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPXALELXTVLVGSPRKDGLV-SL 82
Query: 96 LKIANVSDKYSLCTYPAEPDQE-LDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLD 154
L + +D+ +P Q L+ +W +Y KG +Y A P G
Sbjct: 83 LTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYV----KGVIQYYPA-----APLPGFS 133
Query: 155 ILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGAQSGGMD 213
+V VP G GLSSSA+ ++ L AQ+ + E + G G D
Sbjct: 134 AVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGXPCGIXD 193
Query: 214 QAISIMAKSGFAELIDFNPIRATDVQL--PAGGTFVIAHSLAESLKAVTAATNYNNRVVE 271
Q IS+ + G A LID + + V L P + ++ SL A++ Y R +
Sbjct: 194 QFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSL----ASSEYPVRRRQ 249
Query: 272 CRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMA 331
C A LG +E++ +V+ L ++E A ++ + +E +
Sbjct: 250 CEEVARALG-------KESLREVQ-LEELE-----------------AARDLVSKEGF-- 282
Query: 332 XXXXXXXXXXLXXXXXXXXXXLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSD 391
+RA HV E +R +
Sbjct: 283 ----------------------------------RRARHVVGEIRRTAQAAAALRRG--- 305
Query: 392 EDKLRRLGDLMNDSHHSCSVLYECSCPELEELV 424
R G L +SH S YE SCPEL++LV
Sbjct: 306 --DYRAFGRLXVESHRSLRDDYEVSCPELDQLV 336
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLC 108
+ +SPGRVNLIGEH DY V+PMAI T + KH GE + K+SL
Sbjct: 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKH--GEVILYSEHFGEERKFSLN 59
Query: 109 TYPAEPDQELDL-KHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGL 167
DL K + W Y KG + +K +VG G+ V G +P G+GL
Sbjct: 60 ----------DLRKENSWIDYV----KGIFWVLKESDYEVG---GIKGRVSGNLPLGAGL 102
Query: 168 SSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECE-RYIGAQSGGMDQAISIMAKSGFAE 226
SSSA+F L + +++ L + E ++G G +DQ + + G
Sbjct: 103 SSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVI 162
Query: 227 LIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNR 268
+D + + + P + ++ ++ ++ A++ Y R
Sbjct: 163 FLDTHTLDYEYIPFPKDVSILVFYT---GVRRELASSEYAER 201
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 364 LHQRA-AHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEE 422
LH++ ++ E RV +D + E + +G ++ +H + YE SC EL+
Sbjct: 231 LHRKFFGYIVRENARVLEVRDAL-----KEGNVEEVGKILTTAHWDLAKNYEVSCKELDF 285
Query: 423 LVTVCRDNGALGARLTGAGWGGCAVVLV 450
V GA GARLTGAG+GG A+ LV
Sbjct: 286 FVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 363 KLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEE 422
+L+ H+ S+A+ D L+RLG LMN +H C + + SC ELE
Sbjct: 221 RLYDNYTHIVSQAREALQKGD-----------LQRLGQLMNANHDLCRQI-DVSCRELES 268
Query: 423 LVTVCRDNGALGARLTGAGWGGCAVVLVKES 453
+V CR GALGA+L+G G GG AV L S
Sbjct: 269 IVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 363 KLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEE 422
+L+ H+ S+A+ D L+RLG L N +H C + + SC ELE
Sbjct: 221 RLYDNYTHIVSQAREALQKGD-----------LQRLGQLXNANHDLCRQI-DVSCRELES 268
Query: 423 LVTVCRDNGALGARLTGAGWGGCAVVLVKES 453
+V CR GALGA+L+G G GG AV L S
Sbjct: 269 IVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLC 108
+ +SPGRVNLIGEH DY V P AI TI+ K+ DK L
Sbjct: 4 ITVKSPGRVNLIGEHTDYTYGYVXPXAIDLYTIITAEKY---------------DKVQLY 48
Query: 109 T--YPAEPDQELD--LKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTG 164
+ + E LD K W Y KG + +G +G GL + G +P G
Sbjct: 49 SEHFNEEKTFTLDNLTKEGSWIDYV----KGVLWVLIQEGYKIG---GLKGKITGDLPLG 101
Query: 165 SGLSSSAAFVCSSTIALMAAFGVEV-PKKEIAQLTCECERYIGAQSGGMDQAISIMAKSG 223
+GLSSSA+F L + + + P K+ ++G G +DQ + K
Sbjct: 102 AGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKD 161
Query: 224 FAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNR 268
+D ++ + P + ++ ++ +K A++ Y R
Sbjct: 162 NVIFLDTQTLQYEYIPFPKDVSVLVFYT---GVKRELASSEYAER 203
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 364 LHQRA-AHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEE 422
LH++ +++ E RV +D + E + ++G ++ +H + Y SC EL+
Sbjct: 233 LHRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDF 287
Query: 423 LVTVCRDNGALGARLTGAGWGGCAVVLV 450
V + GA GARLTGAG+GG A+ LV
Sbjct: 288 FVKKAXELGAYGARLTGAGFGGSAIALV 315
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 53 SPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPA 112
+P +V L GEH GY + MAI + + I++ + E E +L + +++ L
Sbjct: 10 TPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKE--TQEDEIILNLNDLNKSLGL----- 62
Query: 113 EPDQELDLKHHQWG--HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSS 170
++ ++ + +G Y +C K +Y L++ P G I + +P GL SS
Sbjct: 63 NLNEIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPISCGLGSS 117
Query: 171 AAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELID- 229
A+ + A+ + E+ EIA+L E+ I ++ D S + G E+ +
Sbjct: 118 ASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDT--STITYKGILEIKNN 175
Query: 230 -FNPIRATDVQLPAGGTFVIAHSLAESLKAVTA 261
F I+ + F+I + AE K TA
Sbjct: 176 KFRKIKGEFEEFLKNCKFLIVY--AEKRKKKTA 206
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 398 LGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLV 450
G LM +H L S P+L+ +V + G GA+LTGAG GGC ++LV
Sbjct: 241 FGKLMTKNHELLKKL-NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILV 291
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 53 SPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPA 112
+P +V L GEH GY + MAI + + I++ + E E +L + +++ L
Sbjct: 7 TPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKE--TQEDEIILNLNDLNKSLGL----- 59
Query: 113 EPDQELDLKHHQWG--HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSS 170
++ ++ + +G Y +C K +Y L++ P G I + +P GL SS
Sbjct: 60 NLNEIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPISCGLGSS 114
Query: 171 AAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELID- 229
A+ + A+ + E+ EIA+L E+ I ++ D S + G E+ +
Sbjct: 115 ASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDT--STITYKGILEIKNN 172
Query: 230 -FNPIRATDVQLPAGGTFVIAHSLAESLKAVTA 261
F I+ + F+I + AE K TA
Sbjct: 173 KFRKIKGEFEEFLKNCKFLIVY--AEKRKKKTA 203
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 363 KLHQRAAHVYSEAKRVYAFKDTVYSNLS---DED-KLRR---LGDLMNDSHHSCSVLYEC 415
K ++ A + +E ++ KD ++ + DE K++ G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIEN-KDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 416 SCPELEELVTVCRDNGALGARLTGAGWGGCAVVLV 450
S P+L+ +V + G GA+LTGAG GGC ++LV
Sbjct: 255 STPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILV 288
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 366 QRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVT 425
Q +HV K V D + + K L D+ N+ H L S ++E+L+
Sbjct: 202 QYMSHVKHIGKLVLRASDVI-----EHHKFEALADIFNECHADLKAL-TVSHDKIEQLMK 255
Query: 426 VCRDNGALGARLTGAGWGGCAVVLVKE 452
+ ++NGA+ +LTGAG GG ++L K+
Sbjct: 256 IGKENGAIAGKLTGAGRGGSMLLLAKD 282
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLC 108
V +PG++ L GEH G + + A V +R V E + I + + L
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACA------VELRTRVRAELNDSITIQSQIGRTGL- 74
Query: 109 TYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLS 168
D + H + V K P G+ + VD +P GSGL
Sbjct: 75 ----------DFEKHPY-----------VSAVIEKXRKSIPINGVFLTVDSDIPVGSGLG 113
Query: 169 SSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELI 228
SSAA +S AL FG + +EIA+L E E + + D +S G +
Sbjct: 114 SSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFG--GVVTIP 171
Query: 229 DFNPIRATDVQLPAGGTFVIAHS 251
+ ++ D + G T V + +
Sbjct: 172 ERRKLKTPDCGIVIGDTGVFSST 194
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLC 108
V +PG++ L GEH G + + A V +R V E + I + + L
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACA------VELRTRVRAELNDSITIQSQIGRTGL- 74
Query: 109 TYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLS 168
D + H + V K P G+ + VD +P GSGL
Sbjct: 75 ----------DFEKHPY-----------VSAVIEKXRKSIPINGVFLTVDSDIPVGSGLG 113
Query: 169 SSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELI 228
SSAA +S AL FG + +EIA+L E E + + D +S G +
Sbjct: 114 SSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFG--GVVTIP 171
Query: 229 DFNPIRATDVQLPAGGTFVIAHS 251
+ ++ D + G T V + +
Sbjct: 172 ERRKLKTPDCGIVIGDTGVFSST 194
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
pdb|2R42|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 395
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 75/204 (36%), Gaps = 44/204 (21%)
Query: 53 SPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPA 112
+PG+V L GEH G L +A+ T + +R +G+ L + + + T
Sbjct: 10 APGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATL-- 67
Query: 113 EPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLD---VGPP------------------- 150
Q LD + G + + K GL VG
Sbjct: 68 ---QLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQR 124
Query: 151 --VGLDILVDGIVPTGSGLSSSAAF-VCSSTIALMAAFGVEVPKKE-------------- 193
LDI+V +P G+GL SSAA+ VC + L A V P K+
Sbjct: 125 TLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKS 184
Query: 194 IAQLTCECERYIGAQSGGMDQAIS 217
I + E ER I G+D ++S
Sbjct: 185 INKWAYEGERVIHGNPSGVDNSVS 208
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 5 EETPVPTLASLKEVYGEGSQLEEAQLRFGNLK----SKFIQIFGHAPDVYARSPGRVNLI 60
EE TL + +V GE S+ +E ++ NLK +K+++ +VYA S G +N +
Sbjct: 43 EEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEVYALSNGSINEV 102
Query: 61 GEHIDYEG 68
+H++ G
Sbjct: 103 KQHLERNG 110
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 398 LGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLV 450
LG +++ +H + S E + LV +GALGA+++G G GGC + LV
Sbjct: 215 LGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALV 266
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 5 EETPVPTLASLKEVYGEGSQLEEAQLRFGNLK----SKFIQIFGHAPDVYARSPGRVNLI 60
EE TL + +V GE S+ +E ++ NLK +K+++ +VYA S G +N +
Sbjct: 48 EEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEVYALSNGSINEV 107
Query: 61 GEHIDYEG 68
+H++ G
Sbjct: 108 KQHLERNG 115
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|B Chain B, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|C Chain C, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|D Chain D, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 396
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 44/204 (21%)
Query: 53 SPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPA 112
+PG+V L GEH G L +++ T + ++ H +G+ + L + N+ K + +
Sbjct: 10 APGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVD--LSLPNIGIKRA---WDV 64
Query: 113 EPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPV--------------------- 151
Q LD + G + + + GL V
Sbjct: 65 ARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQR 124
Query: 152 ---GLDILVDGIVPTGSGLSSSAAF-VCSSTIALMAAFGVEVPKKE-------------- 193
LDI+V +P G+GL SSAA+ VC + L + P K+
Sbjct: 125 ALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLEL 184
Query: 194 IAQLTCECERYIGAQSGGMDQAIS 217
I + + ER I G+D A+S
Sbjct: 185 INKWAFQGERMIHGNPSGVDNAVS 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,278,356
Number of Sequences: 62578
Number of extensions: 538434
Number of successful extensions: 1377
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 43
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)