Query 048621
Match_columns 456
No_of_seqs 183 out of 1581
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 3.8E-81 8.3E-86 649.4 43.8 452 1-455 1-452 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 1.5E-73 3.2E-78 558.4 36.2 347 33-456 7-357 (390)
3 PLN02865 galactokinase 100.0 3.3E-67 7.2E-72 533.9 38.7 354 30-456 10-384 (423)
4 PTZ00290 galactokinase; Provis 100.0 4.8E-66 1E-70 530.1 39.5 373 30-455 13-423 (468)
5 PRK05101 galactokinase; Provis 100.0 6.7E-64 1.4E-68 510.0 37.8 342 33-455 5-349 (382)
6 PRK05322 galactokinase; Provis 100.0 1.5E-63 3.2E-68 507.9 37.7 347 32-454 3-353 (387)
7 TIGR00131 gal_kin galactokinas 100.0 1.9E-62 4.2E-67 501.3 36.2 349 32-455 1-353 (386)
8 KOG0631 Galactokinase [Carbohy 100.0 1.9E-61 4.1E-66 480.0 28.5 437 6-455 2-447 (489)
9 PRK00555 galactokinase; Provis 100.0 9.6E-59 2.1E-63 468.8 35.0 322 49-454 3-328 (363)
10 PRK03817 galactokinase; Provis 100.0 2.4E-51 5.2E-56 414.8 32.7 314 50-454 2-316 (351)
11 COG1577 ERG12 Mevalonate kinas 100.0 1.2E-47 2.6E-52 373.5 26.3 280 50-453 2-282 (307)
12 TIGR01220 Pmev_kin_Gr_pos phos 100.0 2.7E-45 5.9E-50 370.3 33.4 298 49-453 1-332 (358)
13 PLN02677 mevalonate kinase 100.0 6.9E-45 1.5E-49 367.4 28.6 304 48-452 2-348 (387)
14 TIGR00549 mevalon_kin mevalona 100.0 9.3E-45 2E-49 354.7 26.7 273 53-449 1-273 (273)
15 PRK13412 fkp bifunctional fuco 100.0 1.8E-41 4E-46 369.3 32.1 291 49-453 610-938 (974)
16 KOG1511 Mevalonate kinase MVK/ 100.0 1.6E-40 3.5E-45 317.2 25.1 297 49-454 5-348 (397)
17 PTZ00298 mevalonate kinase; Pr 100.0 1.3E-39 2.7E-44 326.0 27.3 285 47-452 9-295 (328)
18 PRK03926 mevalonate kinase; Pr 100.0 1.9E-38 4.1E-43 314.6 30.6 271 48-454 1-271 (302)
19 COG2605 Predicted kinase relat 100.0 4.1E-38 8.9E-43 294.7 27.3 284 48-454 1-302 (333)
20 TIGR01219 Pmev_kin_ERG8 phosph 100.0 5.2E-29 1.1E-33 254.9 30.6 325 51-453 2-418 (454)
21 PRK00128 ipk 4-diphosphocytidy 99.9 2E-26 4.4E-31 226.7 23.5 250 49-452 3-258 (286)
22 PLN02451 homoserine kinase 99.9 1.1E-24 2.4E-29 220.3 26.4 269 48-452 53-327 (370)
23 PRK02534 4-diphosphocytidyl-2- 99.9 4.6E-24 1E-28 212.4 25.2 266 48-452 3-276 (312)
24 TIGR00154 ispE 4-diphosphocyti 99.9 8E-24 1.7E-28 208.5 24.3 170 50-256 3-178 (293)
25 PRK01212 homoserine kinase; Pr 99.9 1.4E-22 2.9E-27 201.0 27.4 260 48-453 3-267 (301)
26 COG0083 ThrB Homoserine kinase 99.9 2.7E-22 5.7E-27 194.0 28.5 259 48-453 3-263 (299)
27 TIGR00191 thrB homoserine kina 99.9 1.3E-22 2.9E-27 201.1 25.4 261 49-453 1-267 (302)
28 TIGR01920 Shik_kin_archae shik 99.9 2.7E-22 5.8E-27 194.3 26.7 146 70-253 15-164 (261)
29 PRK03188 4-diphosphocytidyl-2- 99.9 3.9E-21 8.4E-26 190.5 25.4 255 50-452 2-262 (300)
30 PRK01123 shikimate kinase; Pro 99.9 3.5E-20 7.6E-25 181.9 25.0 167 55-254 3-175 (282)
31 PTZ00299 homoserine kinase; Pr 99.9 1.1E-19 2.5E-24 181.0 25.0 259 49-452 8-274 (336)
32 PRK14614 4-diphosphocytidyl-2- 99.9 5.2E-20 1.1E-24 180.4 21.7 169 49-256 4-177 (280)
33 PRK14608 4-diphosphocytidyl-2- 99.9 1.4E-19 3E-24 178.2 24.6 173 47-256 5-182 (290)
34 PRK14609 4-diphosphocytidyl-2- 99.9 1.5E-19 3.2E-24 175.9 24.1 167 50-256 2-175 (269)
35 PRK14611 4-diphosphocytidyl-2- 99.8 1.8E-18 4E-23 169.1 24.4 164 50-256 3-172 (275)
36 PRK14616 4-diphosphocytidyl-2- 99.8 2.8E-18 6.1E-23 168.9 25.3 166 49-255 4-175 (287)
37 PRK14612 4-diphosphocytidyl-2- 99.8 8.9E-19 1.9E-23 171.5 21.4 163 49-255 3-170 (276)
38 PRK14615 4-diphosphocytidyl-2- 99.8 3.3E-18 7.2E-23 168.8 25.3 170 48-257 6-182 (296)
39 PRK14613 4-diphosphocytidyl-2- 99.8 9.5E-17 2.1E-21 158.4 25.6 262 52-452 2-272 (297)
40 PRK00343 ipk 4-diphosphocytidy 99.8 5.1E-17 1.1E-21 158.3 23.3 163 49-256 7-178 (271)
41 TIGR00144 beta_RFAP_syn beta-R 99.7 1.1E-14 2.3E-19 145.4 27.8 167 50-254 2-192 (324)
42 PRK14610 4-diphosphocytidyl-2- 99.6 4.1E-14 8.9E-19 138.8 24.0 163 49-253 4-173 (283)
43 PRK00650 4-diphosphocytidyl-2- 99.6 3.8E-14 8.1E-19 138.1 21.7 164 50-254 2-170 (288)
44 PF10509 GalKase_gal_bdg: Gala 99.6 3.5E-16 7.6E-21 112.2 5.4 52 36-87 1-52 (52)
45 KOG4644 L-fucose kinase [Carbo 99.6 1.9E-13 4.1E-18 136.9 23.8 203 150-453 689-909 (948)
46 COG1947 IspE 4-diphosphocytidy 99.6 1.2E-13 2.7E-18 133.1 20.6 167 49-256 4-177 (289)
47 PF00288 GHMP_kinases_N: GHMP 99.6 7.5E-15 1.6E-19 112.3 7.8 67 154-221 1-67 (67)
48 PRK05905 hypothetical protein; 99.5 2.5E-12 5.4E-17 123.7 20.8 165 50-254 2-175 (258)
49 COG3890 ERG8 Phosphomevalonate 99.5 2.9E-11 6.3E-16 113.4 23.3 178 50-254 5-203 (337)
50 COG1685 Archaeal shikimate kin 99.4 8.3E-11 1.8E-15 110.6 24.5 163 50-253 4-170 (278)
51 TIGR01240 mevDPdecarb diphosph 99.4 1.5E-10 3.2E-15 114.4 26.3 106 134-253 70-182 (305)
52 KOG4519 Phosphomevalonate kina 99.3 1.3E-10 2.8E-15 111.3 20.2 354 49-452 3-418 (459)
53 PRK04181 4-diphosphocytidyl-2- 99.3 3.5E-11 7.5E-16 116.1 16.2 167 50-256 2-178 (257)
54 PF08544 GHMP_kinases_C: GHMP 99.2 3.3E-11 7.1E-16 96.2 7.2 67 381-452 1-68 (85)
55 COG1907 Predicted archaeal sug 99.1 3.6E-08 7.8E-13 93.9 23.5 194 150-454 69-277 (312)
56 COG4542 PduX Protein involved 99.0 3.7E-08 8E-13 91.8 20.5 119 47-202 12-133 (293)
57 COG1829 Predicted archaeal kin 98.8 2.5E-06 5.4E-11 81.1 23.6 158 49-252 3-170 (283)
58 PLN02407 diphosphomevalonate d 98.7 2.2E-06 4.7E-11 85.1 19.4 60 153-221 104-166 (343)
59 KOG1537 Homoserine kinase [Ami 98.5 4.5E-07 9.7E-12 84.9 9.9 277 46-452 2-318 (355)
60 COG3407 MVD1 Mevalonate pyroph 98.5 8.2E-05 1.8E-09 73.4 24.5 65 134-201 75-139 (329)
61 KOG2833 Mevalonate pyrophospha 98.4 0.00011 2.5E-09 70.8 23.7 131 49-201 8-154 (395)
62 TIGR00162 conserved hypothetic 35.6 1.5E+02 0.0032 27.2 7.2 56 136-203 102-159 (188)
63 PF04604 L_biotic_typeA: Type- 32.0 37 0.00081 24.1 1.9 18 407-424 7-24 (51)
64 PF12098 DUF3574: Protein of u 29.7 73 0.0016 26.3 3.6 32 28-59 73-104 (104)
65 COG0024 Map Methionine aminope 29.3 1.3E+02 0.0029 29.1 5.9 50 395-444 14-66 (255)
66 PF03460 NIR_SIR_ferr: Nitrite 28.8 37 0.0008 25.2 1.6 40 414-455 20-59 (69)
67 TIGR00161 conserved hypothetic 21.7 4.7E+02 0.01 24.8 8.2 48 151-203 168-215 (238)
68 PF15058 Speriolin_N: Sperioli 20.2 1.6E+02 0.0035 27.1 4.2 20 394-413 23-42 (200)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=3.8e-81 Score=649.44 Aligned_cols=452 Identities=76% Similarity=1.226 Sum_probs=388.0
Q ss_pred CCCCCCCCccccccchhhcCCchhhHHHHHHHHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccce
Q 048621 1 MARHEETPVPTLASLKEVYGEGSQLEEAQLRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDT 80 (456)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~ 80 (456)
|..|++-+||+|++|..+|.+.+.+++++.|+.++.+.|.+.||.+|++.++|||||+|+|||+||+|++||++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~F~~~fg~~p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~ 80 (497)
T PLN02521 1 MAKHEEEPVPVFSSLEPVYGDGSLLEEARLRYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDT 80 (497)
T ss_pred CCCCCCCCcceechhHHhcCCcchhHHHHHHHHHHHHHHHHHHCCCCCEEEECCceEEEeccceeecCCeEEEEEEcCcE
Confidence 77799999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEec
Q 048621 81 IVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGI 160 (456)
Q Consensus 81 ~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~ 160 (456)
+|.++++ +++..+++.+.+..+....|+++.....+.....|.+|+.+++++++..+.+.+.....+.||++.|.|+
T Consensus 81 ~v~~~~~---~~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~ 157 (497)
T PLN02521 81 IVAIRRA---EGSKKLRIANVNDKYTTCTFPADPDQEVDLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGT 157 (497)
T ss_pred EEEEEEc---CCCCEEEEEECCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecC
Confidence 9999998 5336788887654443334444321111224457999999999999999987765311245999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccC
Q 048621 161 VPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQL 240 (456)
Q Consensus 161 IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~ 240 (456)
||+|+|||||||++||++.|++.+++.++++++++++|+.+|+++|++||+|||+++++|+.|+++++||+++.++++++
T Consensus 158 IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~ 237 (497)
T PLN02521 158 VPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQL 237 (497)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHH
Q 048621 241 PAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAV 320 (456)
Q Consensus 241 p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v 320 (456)
|.++.|+|++|++++.|+.++++.||.|++||+.|+++|+++++++.......+.+|||+.+++..+.+.....++...+
T Consensus 238 p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~ 317 (497)
T PLN02521 238 PAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAV 317 (497)
T ss_pred CCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHh
Confidence 98999999999999999999999999999999999999998888754333334668999876544445555556678888
Q ss_pred HhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHH
Q 048621 321 KEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGD 400 (456)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~ 400 (456)
+..+...+|+.++++++++..+.++.++..+....+...++|.+++|++|+++|+.||.+|+++|+++++.+.++..||+
T Consensus 318 ~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~ 397 (497)
T PLN02521 318 KELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGD 397 (497)
T ss_pred hhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 88888889999999988775555555443333333334667789999999999999999999999987544556999999
Q ss_pred HHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCCC
Q 048621 401 LMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 401 Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~~ 455 (456)
||+++|.+||++|+||||++|.|+++|++.|++||||||||||||+|+|++++.+
T Consensus 398 lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~ 452 (497)
T PLN02521 398 LMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIV 452 (497)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHH
Confidence 9999999999999999999999999999999999999999999999999987643
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-73 Score=558.39 Aligned_cols=347 Identities=37% Similarity=0.576 Sum_probs=299.6
Q ss_pred HHHHHHHHHHhCC-CCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeee
Q 048621 33 GNLKSKFIQIFGH-APDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYP 111 (456)
Q Consensus 33 ~~~~~~f~~~fg~-~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~ 111 (456)
+++.+.|...|+. +|+..++||||++|+|||+||+||.|+++|||.++++.++++ +| .++++.+.+.++....+.
T Consensus 7 ~~~~~~f~~~f~~~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r---~d-~~v~l~s~n~~~~~~~~~ 82 (390)
T COG0153 7 EKLQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKR---DD-GKVRLYSANFGNAGDIFF 82 (390)
T ss_pred HHHHHHHHHHhcccCcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEc---cC-ceEEEEeCCCccccceee
Confidence 3567778888886 999999999999999999999999999999999999999999 76 889999987655444455
Q ss_pred CCCCccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCH
Q 048621 112 AEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPK 191 (456)
Q Consensus 112 l~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~ 191 (456)
++.+.... +.+.|.||++ +++..++..|+. ..|+++.|.|+||.|+|||||||+.||++.++.+++++++++
T Consensus 83 ~~~d~~~~-~~~~W~nYvk----gvi~~l~~~g~~---~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k 154 (390)
T COG0153 83 LLLDIAKE-KIDDWANYVK----GVIKALQKRGYA---FTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDK 154 (390)
T ss_pred cchhhccc-ccchhhhhHH----HHHHHHHhcCCC---cCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCH
Confidence 44322221 3478999995 677778888875 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCC-cEEEEEecCCccccccccccchhhHH
Q 048621 192 KEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAG-GTFVIAHSLAESLKAVTAATNYNNRV 269 (456)
Q Consensus 192 ~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~-~~~ll~~s~~~~~~~~~~~~~yn~R~ 269 (456)
.+++++|+.+|+ ++|.+||+|||+++.||+++|++++||++++++++|+|.+ +.++|+||++ |+.++.++||.|+
T Consensus 155 ~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr 231 (390)
T COG0153 155 AELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERR 231 (390)
T ss_pred HHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHH
Confidence 999999999995 9999999999999999999999999999999999999975 9999999998 6789999999999
Q ss_pred HHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhcc
Q 048621 270 VECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANS 349 (456)
Q Consensus 270 ~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (456)
.||..|++.|++. +++|||++.. ++.+.... +
T Consensus 232 ~ece~A~~~l~~~-----------~~~L~d~~~~-----------------------------~~~~~~~~----i---- 263 (390)
T COG0153 232 AECEEAAEFLGVS-----------IKSLRDVTDE-----------------------------EFAALQAE----I---- 263 (390)
T ss_pred HHHHHHHHHHHHh-----------hhhhhhcCHH-----------------------------HHHhhhhh----c----
Confidence 9999999999882 1267766431 12211100 0
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHh
Q 048621 350 SSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRD 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~ 429 (456)
.+ .| .+++|++|+++|++||+++++||+++| +.+||+||++||.+||++|+|||||||+||++|..
T Consensus 264 ~~-~~--------~~~rRa~hvv~En~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~ 329 (390)
T COG0153 264 EV-DP--------KIARRARHVVTENQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALA 329 (390)
T ss_pred cc-ch--------HHHHHHHHHHhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 00 11 368999999999999999999999886 99999999999999999999999999999999976
Q ss_pred -CCCceeeecccCCcceEEEEecCCCCC
Q 048621 430 -NGALGARLTGAGWGGCAVVLVKESIVP 456 (456)
Q Consensus 430 -~GalGaKltGaG~GG~~i~L~~~~~~~ 456 (456)
.|++||||||||||||+|+|++++.++
T Consensus 330 ~~G~~GaRmTGaGfGGc~IaLv~~~~v~ 357 (390)
T COG0153 330 AGGAYGARMTGAGFGGCVIALVPNDDVE 357 (390)
T ss_pred cCCcccceecCCCCCceEEEEechhhHH
Confidence 588999999999999999999988653
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=3.3e-67 Score=533.92 Aligned_cols=354 Identities=25% Similarity=0.363 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHhCCCCC--EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCC-
Q 048621 30 LRFGNLKSKFIQIFGHAPD--VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYS- 106 (456)
Q Consensus 30 ~~~~~~~~~f~~~fg~~~~--~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~- 106 (456)
..++++.+.|++.||.+|+ ..++|||||+|+|||+||+||+||+|||++++++.++++ ++ ..+++.|.+ |+
T Consensus 10 ~~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~---~~-~~i~v~s~~--~~~ 83 (423)
T PLN02865 10 NELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS---GD-PEVLLRSAQ--FEG 83 (423)
T ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEEC---CC-CEEEEEECC--CCC
Confidence 3445799999999999997 689999999999999999999999999999999999998 65 788988764 32
Q ss_pred ceeeeCCCC-ccc------cccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecC-CCCCCCCchHHHHHHHH
Q 048621 107 LCTYPAEPD-QEL------DLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIV-PTGSGLSSSAAFVCSST 178 (456)
Q Consensus 107 ~~~~~l~~~-~~~------~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~I-P~g~GLGSSAA~~vA~~ 178 (456)
...|+++.. .+. ......|.+|++ +++..+.+.|.. ...||++.|.|+| |+++|||||||++||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~Yv~----gv~~~l~~~g~~--~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~ 157 (423)
T PLN02865 84 EVRFRVDEIQHPIANVSSDSKEESNWGDYAR----GAVYALQSRGHA--LSQGITGYISGSEGLDSSGLSSSAAVGVAYL 157 (423)
T ss_pred ceEEeccccccccccccccCCCCCCHHHHHH----HHHHHHHHcCCC--CCCceEEEEECCCCCCCCcccHHHHHHHHHH
Confidence 234554321 000 123467999994 666666667763 2479999999999 57999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCC-------CCcEEEEEe
Q 048621 179 IALMAAFGVEVPKKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLP-------AGGTFVIAH 250 (456)
Q Consensus 179 ~al~~l~g~~ls~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p-------~~~~~ll~~ 250 (456)
.+++.+++..+++++++++|+.+|+ ++|.+||+|||+++++|..|+++++||+++.++.+++| .++.|++++
T Consensus 158 ~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~ 237 (423)
T PLN02865 158 LALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAF 237 (423)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEe
Confidence 9999999999999999999999996 88999999999999999999999999999877777765 368899999
Q ss_pred cCCcccccccc-ccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCC
Q 048621 251 SLAESLKAVTA-ATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPY 329 (456)
Q Consensus 251 s~~~~~~~~~~-~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~ 329 (456)
|+++ |.+. ++.||.|+.||+.|+++|++++++... ..+||++..
T Consensus 238 s~~~---h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~-----~~~Lr~~~~--------------------------- 282 (423)
T PLN02865 238 SGLR---HALTNKPGYNLRVSECQEAARFLLEASGNDEL-----EPLLCNVEP--------------------------- 282 (423)
T ss_pred CCCc---hhhcccchhhHHHHHHHHHHHHHHHhcCCccc-----hhhhhcCCH---------------------------
Confidence 9984 4444 789999999999999999988764211 124554421
Q ss_pred CHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhh
Q 048621 330 MAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSC 409 (456)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~l 409 (456)
+++.+... .++. .+++|++|+++|+.||.+++++|+++| ++.||+||+++|.+|
T Consensus 283 --~~~~~~~~------------~l~~-------~l~~Ra~Hv~~E~~Rv~~~~~al~~~d-----~~~~g~lm~~sh~Sl 336 (423)
T PLN02865 283 --EVYEAHKC------------KLEA-------VLARRAEHYFSENMRVIKGVEAWASGN-----LEEFGKLISASGLSS 336 (423)
T ss_pred --HHHHHHHh------------hcCH-------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHhhhhH
Confidence 11111100 0111 368999999999999999999999986 999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHh-CCCceeeecccCCcceEEEEecCCCCC
Q 048621 410 SVLYECSCPELEELVTVCRD-NGALGARLTGAGWGGCAVVLVKESIVP 456 (456)
Q Consensus 410 r~l~~vS~peld~lv~~a~~-~GalGaKltGaG~GG~~i~L~~~~~~~ 456 (456)
|++|+|||||+|.|++.+++ .|++||||||||||||+++|++++.++
T Consensus 337 rd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~ 384 (423)
T PLN02865 337 IENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAE 384 (423)
T ss_pred HhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHH
Confidence 99999999999999999998 599999999999999999999987653
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=4.8e-66 Score=530.15 Aligned_cols=373 Identities=23% Similarity=0.360 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHHhCCCCC------EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCC
Q 048621 30 LRFGNLKSKFIQIFGHAPD------VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSD 103 (456)
Q Consensus 30 ~~~~~~~~~f~~~fg~~~~------~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~ 103 (456)
.+++++++.|.+.||.+|+ ++++|||||+|+|||+||+||.||++||+++++|.+.++.+..+ ..+++.+...
T Consensus 13 ~~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~-~~i~~~~~~~ 91 (468)
T PTZ00290 13 STLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCD-HKLRFATETD 91 (468)
T ss_pred HHHHHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCC-CeEEEEECCC
Confidence 3578899999999999995 88999999999999999999999999999999999977522233 6788854321
Q ss_pred CCCceeeeCCCCccccccCCCcchhhhhHHHHHHHH-HHHcCCCC--CCCCceEEEEEecCCCCCCCCchHHHHHHHHHH
Q 048621 104 KYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEY-VKAKGLDV--GPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIA 180 (456)
Q Consensus 104 ~~~~~~~~l~~~~~~~~~~~~w~~~~~~~i~~v~~~-l~~~g~~~--~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~a 180 (456)
..|+++... .......|.+|++ +++.. +++.|... ....||++.|.|+||+|+|||||||++||++.|
T Consensus 92 ----~~~~~~~~~-~~~~~~~W~nYv~----gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~a 162 (468)
T PTZ00290 92 ----EHFVLDHLG-GAKHNKAWTTFVR----GAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNA 162 (468)
T ss_pred ----ceeecCccc-ccCCcccHHHHHH----HHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHH
Confidence 234443211 1123467999995 55443 44456521 024699999999999999999999999999999
Q ss_pred HHHHhCC-----C------------C---CHHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeecc
Q 048621 181 LMAAFGV-----E------------V---PKKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQ 239 (456)
Q Consensus 181 l~~l~g~-----~------------l---s~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~ 239 (456)
++.++++ . + +..+++.+|+.+|+ ++|.+||+|||+++++|+.|+++++||.++++++++
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~ 242 (468)
T PTZ00290 163 INTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHD 242 (468)
T ss_pred HHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEec
Confidence 9998632 1 2 34888999999997 999999999999999999999999999999999998
Q ss_pred CC----CCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccc-cccchhhhhhhhcCCCCCC
Q 048621 240 LP----AGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVK-TLSDVEGLCVAFAGKNGSD 314 (456)
Q Consensus 240 ~p----~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~-~Lr~~~~~~~~~~g~~~~~ 314 (456)
++ .++.|+|+||+++++...+++..||.|+.||..|++.|++..- +.+. +||++..
T Consensus 243 l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l-------~~~~~~Lrd~~~------------ 303 (468)
T PTZ00290 243 MTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRY-------RGKPFTFSDLVR------------ 303 (468)
T ss_pred cCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccc-------cchhhhHHHhhh------------
Confidence 75 4789999999997665555556999999999999999865410 0000 2333210
Q ss_pred chhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcC--CCCh
Q 048621 315 DPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSN--LSDE 392 (456)
Q Consensus 315 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~--d~~~ 392 (456)
...+|+.++... ++...+.+.+|+ .+++|++|+++|+.||.+|+++|++. ....
T Consensus 304 ----------~~~~~~~~~~~~-------~~~~~~~~~l~~-------~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~ 359 (468)
T PTZ00290 304 ----------NPKKYTFDGDVV-------AFMESCKPLMTP-------GEFERGTYNIMEQIRTLEFIKLNDPELPLSRE 359 (468)
T ss_pred ----------ccccccccccHH-------HHHHHhhhcCCH-------HHHHHHHHHhhHHHHHHHHHHHHHhhhhcccc
Confidence 111233322100 111111122222 47899999999999999999999621 0012
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHH-HhCCCceeeecccCCcceEEEEecCCCC
Q 048621 393 DKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVC-RDNGALGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 393 ~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a-~~~GalGaKltGaG~GG~~i~L~~~~~~ 455 (456)
+++..||+||++||.+||++|+|||||||.|++.+ ...|++||||||||||||+|+|++++.+
T Consensus 360 ~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~ 423 (468)
T PTZ00290 360 ERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAV 423 (468)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhH
Confidence 36999999999999999999999999999999976 4569999999999999999999998764
No 5
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=6.7e-64 Score=509.95 Aligned_cols=342 Identities=32% Similarity=0.527 Sum_probs=285.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeC
Q 048621 33 GNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPA 112 (456)
Q Consensus 33 ~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l 112 (456)
+++.+.|++.||.+|.++++|||||+|+|||+||+|+++|++|||++++|.++++ ++ ..+++.+.+.......+++
T Consensus 5 ~~~~~~f~~~fg~~p~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~---~~-~~i~v~s~~~~~~~~~~~~ 80 (382)
T PRK05101 5 QKTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKR---DD-RIVRVIAADYDNQQDEFSL 80 (382)
T ss_pred HHHHHHHHHHhCCCCCeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEEC---CC-CEEEEEECCCCCCceEEec
Confidence 4689999999999999999999999999999999999999999999999999998 65 7888887654222234554
Q ss_pred CCCccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHH
Q 048621 113 EPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKK 192 (456)
Q Consensus 113 ~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~ 192 (456)
+.... ......|.+|++ +++..+...+.. ..|+++.|.|+||+|+|||||||++||++.|++.+++.+++++
T Consensus 81 ~~~~~-~~~~~~w~~yv~----~~~~~l~~~~~~---~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (382)
T PRK05101 81 DAPIV-PHPEQQWANYVR----GVVKHLQERNPD---FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGA 152 (382)
T ss_pred Ccccc-cCCCCchHHHHH----HHHHHHHHhCCC---CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 32111 124467999994 666666655542 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHH
Q 048621 193 EIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVE 271 (456)
Q Consensus 193 el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e 271 (456)
+++++|+++|+ +.|.++|.|||+++++||.++++++++++.+.+++++|.++.|+|+||+++ +.+..+.||.|+.|
T Consensus 153 ~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e 229 (382)
T PRK05101 153 EIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQ 229 (382)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHH
Confidence 99999999997 778888899999999999999999999998889999998999999999995 44566899999999
Q ss_pred HHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCC
Q 048621 272 CRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSS 351 (456)
Q Consensus 272 ~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (456)
|+.|++.+..+ .|+++.. +++.....
T Consensus 230 ~~~A~~~l~~~-------------~l~~~~~-----------------------------~~~~~~~~------------ 255 (382)
T PRK05101 230 CETAARFFGVK-------------ALRDVTL-----------------------------EQFNAVAA------------ 255 (382)
T ss_pred HHHHHHHhChH-------------hhhcCCH-----------------------------HHHHHHHh------------
Confidence 99998876432 3443211 11111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhC-
Q 048621 352 SLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDN- 430 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~- 430 (456)
.+|. .+++|+.|+++|+.||.+++++|+++| ++.||+||+++|.+||+.|+||||++|.|++.|++.
T Consensus 256 ~l~~-------~~~~r~~h~i~E~~rv~~a~~al~~~d-----~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~ 323 (382)
T PRK05101 256 ELDP-------VVAKRARHVITENARTLEAASALAAGD-----LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVI 323 (382)
T ss_pred hCCH-------HHHHHHHHHhHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhcc
Confidence 0111 368899999999999999999999986 999999999999999988999999999999999996
Q ss_pred CC-ceeeecccCCcceEEEEecCCCC
Q 048621 431 GA-LGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 431 Ga-lGaKltGaG~GG~~i~L~~~~~~ 455 (456)
|+ +||||||||||||+|+|++++.+
T Consensus 324 Ga~gGakltGaG~GG~~ial~~~~~~ 349 (382)
T PRK05101 324 GDQGGVRMTGGGFGGCIVALVPEELV 349 (382)
T ss_pred CCcceEEeccCCCccEEEEEEcHHHH
Confidence 98 48899999999999999988754
No 6
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.5e-63 Score=507.91 Aligned_cols=347 Identities=33% Similarity=0.504 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCC-ceee
Q 048621 32 FGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYS-LCTY 110 (456)
Q Consensus 32 ~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~-~~~~ 110 (456)
++++++.|.+.||.+|+.+++|||||+|+|||+||+|++||++||++++++.++++ ++ ..+++.+.+.... ...+
T Consensus 3 ~~~~~~~f~~~fg~~p~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~---~~-~~i~i~s~~~~~~~~~~~ 78 (387)
T PRK05322 3 KEELKKKFAEVFGEEAEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKR---DD-KKVRLYSANFEDLGIIEF 78 (387)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCceeEecccceeecCceeeeeeccceEEEEEEEC---CC-CEEEEEECCCCCCceEEE
Confidence 45789999999999999999999999999999999999999999999999999998 65 7899887643110 1233
Q ss_pred eCCCCccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCC
Q 048621 111 PAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVP 190 (456)
Q Consensus 111 ~l~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls 190 (456)
+++. .. ......|.+|+ ++++..+...+.. ...||++.|.|+||+|+|||||||++||++.|++++++.+++
T Consensus 79 ~~~~-~~-~~~~~~w~~y~----~gvi~~l~~~~~~--~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~ 150 (387)
T PRK05322 79 DLDD-LS-FDKEDDWANYP----KGVLKFLQEAGYK--IDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLD 150 (387)
T ss_pred eccc-cC-CCCccchHHHH----HHHHHHHHHcCCC--CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCC
Confidence 3321 11 12345699998 5777778776653 247999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCC-CcEEEEEecCCccccccccccchhhH
Q 048621 191 KKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPA-GGTFVIAHSLAESLKAVTAATNYNNR 268 (456)
Q Consensus 191 ~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~~yn~R 268 (456)
+++++++|+.+|+ ++|.+||+|||+++++||.++++++++++++.+.+++|. ++.|+|+||++ ++.+.++.||.|
T Consensus 151 ~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r 227 (387)
T PRK05322 151 RLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNER 227 (387)
T ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHH
Confidence 9999999999997 778888889999999999999999999988888888764 67899999998 567788999999
Q ss_pred HHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhc
Q 048621 269 VVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFAN 348 (456)
Q Consensus 269 ~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
+.||..|++.++++++++ +|+++.. +++..+..
T Consensus 228 ~~e~~~a~~~l~~~~~~~---------~l~~~~~-----------------------------~~~~~~~~--------- 260 (387)
T PRK05322 228 RAECEKALEELQKKLDIK---------SLGELTE-----------------------------EEFDEYSY--------- 260 (387)
T ss_pred HHHHHHHHHHHhhhcCcc---------chhcCCH-----------------------------HHHHHHHh---------
Confidence 999999999998876532 4554321 11111100
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHH
Q 048621 349 SSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCR 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~ 428 (456)
.++ ...+++|+.|+++|+.|+.+++.+|+++| ++.||++|+++|.+|++.|++|+|++|.|++.|+
T Consensus 261 ---~~~------~~~~~~r~~h~v~e~~r~~~~~~al~~~d-----~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~ 326 (387)
T PRK05322 261 ---LIK------DETLLKRARHAVTENQRTLKAVKALKAGD-----LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAW 326 (387)
T ss_pred ---hcC------CHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHH
Confidence 000 01368999999999999999999999986 9999999999999999999999999999999997
Q ss_pred -hCCCceeeecccCCcceEEEEecCCC
Q 048621 429 -DNGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 429 -~~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
..|++|+||||||+|||+|+|++.+.
T Consensus 327 ~~~Ga~garlsGaG~GG~vial~~~~~ 353 (387)
T PRK05322 327 KQEGVLGARMTGAGFGGCAIAIVKKDK 353 (387)
T ss_pred hcCCccEEEEecCCCceEEEEEEcHHH
Confidence 47999999999999999999998764
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=1.9e-62 Score=501.30 Aligned_cols=349 Identities=37% Similarity=0.558 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeee
Q 048621 32 FGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYP 111 (456)
Q Consensus 32 ~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~ 111 (456)
|+++.+.|.+.||.+|+++++|||||+|+|||+||+|+++|++|||+++++.++++ ++ ..+++.+.+.......++
T Consensus 1 ~~~~~~~f~~~fg~~p~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~---~~-~~i~i~~~~~~~~~~~~~ 76 (386)
T TIGR00131 1 CESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVR---DD-KNVRIYLANADNKFAERS 76 (386)
T ss_pred ChHHHHHHHHHHCCCCCEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEEC---CC-CeEEEEECCCCCcceEEE
Confidence 45789999999999999999999999999999999999999999999999999998 65 778887654321112233
Q ss_pred CCCCcccc-ccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCC
Q 048621 112 AEPDQELD-LKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVP 190 (456)
Q Consensus 112 l~~~~~~~-~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls 190 (456)
++. +.+ ..+..|.+|++ +++..+.+.+.. ...||++.|.|+||+|+|||||||++||++.|++.+++.+++
T Consensus 77 ~~~--~~~~~~~~~w~~y~~----~~~~~~~~~~~~--~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~ 148 (386)
T TIGR00131 77 LDL--PLDGSEVSDWANYFK----GVLHVAQERFNS--FPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLD 148 (386)
T ss_pred CCC--CCCCCCCCCcHhHHH----HHHHHHHHhcCC--CCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCC
Confidence 321 111 23467999995 455555554432 246999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCC-CcEEEEEecCCccccccccccchhhH
Q 048621 191 KKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPA-GGTFVIAHSLAESLKAVTAATNYNNR 268 (456)
Q Consensus 191 ~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~~yn~R 268 (456)
+++++++|+.+|+ +.|.++|+|||+++++||.|++++++|++.+++++++|. ++.|+|++|+++ +.|.+..||.|
T Consensus 149 ~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~~~~~~~~lvv~~s~~~---~~t~~~~y~~r 225 (386)
T TIGR00131 149 SKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTNVK---RTLAPSNYNTR 225 (386)
T ss_pred HHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCceeeecCCCCCeEEEEEeCCCc---cccccchhHHH
Confidence 9999999999997 678889999999999999999999999998889999987 899999999995 45667899999
Q ss_pred HHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhc
Q 048621 269 VVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFAN 348 (456)
Q Consensus 269 ~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
++||+.|++.++.+. ..+||++... .+. .+.+.++
T Consensus 226 ~~e~~~a~~~l~~~~----------~~~lr~~~~~---------------~~~-----------~~~~~~~--------- 260 (386)
T TIGR00131 226 RQECTTAANFLAATD----------KGALRDFMNE---------------YFA-----------RYIARLT--------- 260 (386)
T ss_pred HHHHHHHHHHhcccc----------ccchhhCCHH---------------HHh-----------hhHhhHh---------
Confidence 999999999886541 0134433221 000 0000010
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHH-
Q 048621 349 SSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVC- 427 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a- 427 (456)
.++. ..++|+.|+++|+.||.+++++|+++| ++.||++|+++|.+|+++|++|||++|.+++.+
T Consensus 261 ---~~~~-------~~~~r~~h~v~e~~rv~~~~~al~~~d-----~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~ 325 (386)
T TIGR00131 261 ---KMLP-------LVEERAKHVVSENLRVLKAVKAMKDND-----FKQFGALMNESHASCDDDYECTCPEIDELVCSAA 325 (386)
T ss_pred ---hcCH-------HHHhhHheeehHHHHHHHHHHHHHhCc-----HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHH
Confidence 0111 256799999999999999999999885 999999999999999998999999999999876
Q ss_pred HhCCCceeeecccCCcceEEEEecCCCC
Q 048621 428 RDNGALGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 428 ~~~GalGaKltGaG~GG~~i~L~~~~~~ 455 (456)
++.||+||||||||||||+|+|++++.+
T Consensus 326 ~~~GAlGakltGaG~GG~vial~~~~~~ 353 (386)
T TIGR00131 326 LVNGSGGSRMTGAGFGGCTVHLVPNENV 353 (386)
T ss_pred hcCCCcEEEEecCCCceEEEEEEcHHHH
Confidence 6679999999999999999999987643
No 8
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=480.02 Aligned_cols=437 Identities=43% Similarity=0.663 Sum_probs=371.7
Q ss_pred CCCccccccchhhcCCchhhHHHHHHHHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEE
Q 048621 6 ETPVPTLASLKEVYGEGSQLEEAQLRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIR 85 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~ 85 (456)
++-+|.|.. ..++.+.+.... .......|.+.||..|++++++|||+||+|||.||+|+.|++||||..+.+.+.
T Consensus 2 ~~~~P~f~~-~~~~~P~~~~~k----~l~~~~~~~~~~~~kp~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~ 76 (489)
T KOG0631|consen 2 VTGVPEFVS-SEISLPRLLILK----VLKEAGAFQAAYGAKPVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVA 76 (489)
T ss_pred cccCccccc-chhhCCcHHHHH----HHHHHHHHHHhhCCCceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEE
Confidence 456778877 788888866552 334556777899999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCe--EEEEecCCCCCceeeeCCC-CccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCC
Q 048621 86 KHVSGETEKV--LKIANVSDKYSLCTYPAEP-DQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVP 162 (456)
Q Consensus 86 ~~~~~~~~~~--i~i~s~~~~~~~~~~~l~~-~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP 162 (456)
+. ++ .. +++.+.+.+|...++++|. ...+++..+.|.+|++|+++++-++++..+....++.|+.+...+++|
T Consensus 77 ~~---~d-~~~sl~~tN~~~~f~~~~~~~p~~~~~I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vP 152 (489)
T KOG0631|consen 77 PS---DD-GIVSLRLTNFNPDFIYFKYPLPSIVWQIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVP 152 (489)
T ss_pred Ec---CC-CceeEEEecCCCccceeeccCCchhcccCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCC
Confidence 98 54 54 7777777777766777765 345677788999999999999999984433321123599999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEee--cCCCceee
Q 048621 163 TGSGLSSSAAFVCSSTIALMAAF-GVE--VPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELID--FNPIRATD 237 (456)
Q Consensus 163 ~g~GLGSSAA~~vA~~~al~~l~-g~~--ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~--~~~~~~~~ 237 (456)
.|+||+||||++++.+.|..++. |.+ .+++++..+...+|+++|..+|||||.++++|..+++++++ +.|++...
T Consensus 153 tgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~~~ 232 (489)
T KOG0631|consen 153 TGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPFRRSM 232 (489)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCcccccc
Confidence 99999999999999999999988 887 78999999999999999999999999999999999999999 77888899
Q ss_pred ccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchh
Q 048621 238 VQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPF 317 (456)
Q Consensus 238 ~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~ 317 (456)
+++|..-.|+|.++.+.++|..++..+||.|+.||+.|...+.++++++..+...+...++. -+. ..+.|..+.++++
T Consensus 233 lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~l 310 (489)
T KOG0631|consen 233 LKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRA-WRG-DIGEGYERAEEML 310 (489)
T ss_pred ccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhc-ccc-ccchhHHHHHHHH
Confidence 99987679999999999999999999999999999999999999998765422222223332 111 3345566677888
Q ss_pred HHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCC-ChHHHH
Q 048621 318 LAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLS-DEDKLR 396 (456)
Q Consensus 318 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~-~~~~~~ 396 (456)
..|.+.+.++||+.+|+...++.+.+.+.+++....++ ..+.+++++|++|+++|+.|+.++..++.+... .++.+.
T Consensus 311 ~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~ 388 (489)
T KOG0631|consen 311 GLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLA 388 (489)
T ss_pred HHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHH
Confidence 89999999999999999999998888888888888776 566778999999999999999999999988521 235588
Q ss_pred HHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCCC
Q 048621 397 RLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 397 ~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~~ 455 (456)
+||+|||++|.+++.+|++||||+|+|+++|++.|.+|+|+||||||||+++|++.+++
T Consensus 389 ~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~ 447 (489)
T KOG0631|consen 389 DFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLV 447 (489)
T ss_pred HHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccch
Confidence 99999999999999999999999999999999999999999999999999999986554
No 9
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=9.6e-59 Score=468.76 Aligned_cols=322 Identities=30% Similarity=0.452 Sum_probs=267.2
Q ss_pred EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchh
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHY 128 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~ 128 (456)
++++|||||+|+|||+||+|++|+++|||++++|.++++ ++ ..+++.+.+... ...++++. .......|.+|
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~---~~-~~i~i~s~~~~~-~~~~~~~~---~~~~~~~w~~y 74 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPE---HT-DAITASSDRADG-SARIPLDT---TPGQVTGWAAY 74 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEEC---CC-CEEEEEECCCCC-ceEEecCC---CCCCCcchHHH
Confidence 578999999999999999999999999999999999998 65 788888765321 12233321 11234679999
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hhCC
Q 048621 129 FICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGA 207 (456)
Q Consensus 129 ~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~-~~~~ 207 (456)
+ ++++..+++.+.. ..|+++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.
T Consensus 75 ~----~gv~~~l~~~g~~---~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~ 147 (363)
T PRK00555 75 A----AGVIWALRGAGHP---VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGA 147 (363)
T ss_pred H----HHHHHHHHHcCCC---CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCC
Confidence 8 4666677777753 579999999999999999999999999999999999999999999999999997 7888
Q ss_pred CCCcchhhhhhhccCCcEEEeecCCCceeeccCCC---CcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhC
Q 048621 208 QSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPA---GGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLG 284 (456)
Q Consensus 208 ~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~---~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~ 284 (456)
+||.|||+++++||.|++++++|.+..++++++|. .+.|+++||+++ +.+....||.|+.||..+.+.+..+
T Consensus 148 ~~G~~Dq~as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~---~~~~~~~y~~rr~~~~~~~~~~~~~-- 222 (363)
T PRK00555 148 PTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRAR---HRHAGGEYAARRASCERAAADLGVS-- 222 (363)
T ss_pred CCChhHHHHHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCc---ccccchhhHHHHHHHHHHHHHhCcc--
Confidence 88889999999999999999999888888888864 357999999985 5667789999999999998765321
Q ss_pred CCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHH
Q 048621 285 MKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKL 364 (456)
Q Consensus 285 ~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
++|++.. +.+..+ . .+ . ....
T Consensus 223 -----------~lr~~~~-----------------------------~~~~~~-~----~~-------~-------~~~~ 243 (363)
T PRK00555 223 -----------SLRAVQD-----------------------------RGLAAL-G----AI-------A-------DPID 243 (363)
T ss_pred -----------chhcCCH-----------------------------HHHHHH-H----hc-------C-------ChHH
Confidence 3443321 111110 0 00 0 0135
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcc
Q 048621 365 HQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGG 444 (456)
Q Consensus 365 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG 444 (456)
++|+.|+++|+.|+.+++.+|+++| ++.||++|+++|+++|+.++||+|++|.|++.+++.|++|+|||||||||
T Consensus 244 ~~r~~h~~~e~~~v~~~~~al~~gd-----~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg 318 (363)
T PRK00555 244 ARRARHVLTENQRVLDFAAALADSD-----FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGG 318 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccC
Confidence 7899999999999999999999986 99999999999999998889999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 048621 445 CAVVLVKESI 454 (456)
Q Consensus 445 ~~i~L~~~~~ 454 (456)
|+++|++++.
T Consensus 319 ~vial~~~~~ 328 (363)
T PRK00555 319 CVIALVPADR 328 (363)
T ss_pred eEEEEEchhH
Confidence 9999998764
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=2.4e-51 Score=414.82 Aligned_cols=314 Identities=33% Similarity=0.496 Sum_probs=259.6
Q ss_pred EEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhh
Q 048621 50 YARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYF 129 (456)
Q Consensus 50 ~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~ 129 (456)
.++|||||+|+|||+||+|+++|++|||++++|.+++. ..+++.+.+... ...|+++. . .....|.+|+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~------~~~~i~~~~~~~-~~~~~~~~---~-~~~~~~~~~~ 70 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS------EKFIFYSENFNE-EKTFELDK---L-EKLNSWADYI 70 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC------CeEEEEECCCCC-cEEEeCCc---c-CCCCchHHHH
Confidence 57899999999999999999999999999999999876 346776654321 13344431 1 2346799998
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hhCCC
Q 048621 130 ICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGAQ 208 (456)
Q Consensus 130 ~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~-~~~~~ 208 (456)
. .++..+.+.+.. ..|+++.|.|+||+++|||||||++||++.|++++++.++++++++++|..+|+ +.|.+
T Consensus 71 ~----~~~~~~~~~~~~---~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~ 143 (351)
T PRK03817 71 K----GVIWVLEKRGYE---VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVP 143 (351)
T ss_pred H----HHHHHHHHcCCC---CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCC
Confidence 5 455556665543 579999999999999999999999999999999999999999999999999997 77888
Q ss_pred CCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcc
Q 048621 209 SGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQ 288 (456)
Q Consensus 209 ~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~ 288 (456)
+|.||++++++|+.++++++++.+..+.++++|.++.+++++|+.+ +.+....||.|+.+|+.+.+.|...
T Consensus 144 ~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~sg~~---~~~~~~~~~~~~~~~~~~~~~l~~~------ 214 (351)
T PRK03817 144 CGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDTGVK---RELASSEYNERRQECEEALKILGKK------ 214 (351)
T ss_pred CcCchhhheeeccCCEEEEEecCCCceEEEecCCCcEEEEEeCCCc---cccccchhHHHHHHHHHHHHHhCcc------
Confidence 8889999999998888888898887788888888999999999984 3455578999999999988876432
Q ss_pred hhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHH
Q 048621 289 EAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRA 368 (456)
Q Consensus 289 ~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (456)
+++++. .+.+. .+|. .+++|+
T Consensus 215 -------~~~~~~-----------------------------~~~~~----------------~l~~-------~~~~~~ 235 (351)
T PRK03817 215 -------SSKEVT-----------------------------EEDLS----------------KLPP-------LLRKRA 235 (351)
T ss_pred -------chhcCC-----------------------------HHHHH----------------hCCH-------HHHHHH
Confidence 222211 01100 0111 357889
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEE
Q 048621 369 AHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVV 448 (456)
Q Consensus 369 ~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~ 448 (456)
.|+++|+.|+.+++.+|+++| ++.||++|+++|.++++.|++|+|++|+|++.+++.|++|+||||||||||+++
T Consensus 236 ~~~v~e~~r~~~~~~al~~~d-----~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vla 310 (351)
T PRK03817 236 GYVLRENERVLKVRDALKEGD-----IETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIA 310 (351)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEE
Confidence 999999999999999999986 999999999999999998899999999999999999999999999999999999
Q ss_pred EecCCC
Q 048621 449 LVKESI 454 (456)
Q Consensus 449 L~~~~~ 454 (456)
|++++.
T Consensus 311 l~~~~~ 316 (351)
T PRK03817 311 LVDKGK 316 (351)
T ss_pred EEchHH
Confidence 998753
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.2e-47 Score=373.47 Aligned_cols=280 Identities=29% Similarity=0.415 Sum_probs=216.9
Q ss_pred EEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhh
Q 048621 50 YARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYF 129 (456)
Q Consensus 50 ~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~ 129 (456)
.++||||++|||||+|+||+|+|++||+++.++.+++. ++ .++.+.+.+.. .. .++ .+ .. ..|+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s---~~-~~~~i~~~~~~--~~--~~~----~~--~~--~~~~ 65 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISES---DS-NKIVIESSDLK--SS--TLE----RD--ED--EGYI 65 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEec---CC-CcEEEeccCCC--Cc--ccc----cc--cc--chHH
Confidence 57899999999999999999999999999999999998 53 67777765321 11 111 11 11 1566
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCC
Q 048621 130 ICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQS 209 (456)
Q Consensus 130 ~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~ 209 (456)
..+++.+.+++.. . ...||+++|.|+||+|+|||||||++||++.|+++++|..+++++++++|+.+|..+|+++
T Consensus 66 ~~~v~~~~e~~~~--~---~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~ 140 (307)
T COG1577 66 QAAVRLASELLNQ--S---SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA 140 (307)
T ss_pred HHHHHHHHHHhcc--c---CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 6666666555543 1 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhccCCcEEEeecCC-CceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcc
Q 048621 210 GGMDQAISIMAKSGFAELIDFNP-IRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQ 288 (456)
Q Consensus 210 g~~D~~~s~~Gg~~~~~~i~~~~-~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~ 288 (456)
|++|.++++||| +++ |+. ...+.+.++....|+|+|+|++..|.
T Consensus 141 Sg~D~a~~~~gg---~v~--~~~~~~~~~l~~~~~~~~~I~~tg~~~sT~------------------------------ 185 (307)
T COG1577 141 SGIDIATITYGG---LVA--FKKGFDFEKLEIELLGTLVIGDTGVPGSTK------------------------------ 185 (307)
T ss_pred CcccceEEEeCC---EEE--EecCCCccccccccCCeEEEEEcCCcCcHH------------------------------
Confidence 999999999999 333 332 34555556543479999999865432
Q ss_pred hhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHH
Q 048621 289 EAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRA 368 (456)
Q Consensus 289 ~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (456)
++|+.|++.+++.+ +.+ . .+++++
T Consensus 186 --------------------------e~V~~V~~l~~~~~---~~~--------~-------------------~~~~~i 209 (307)
T COG1577 186 --------------------------ELVAGVAKLLEEEP---EVI--------D-------------------PILDAI 209 (307)
T ss_pred --------------------------HHHHHHHHHHHhhh---HHH--------H-------------------HHHHHH
Confidence 34444545432210 000 0 112222
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEE
Q 048621 369 AHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVV 448 (456)
Q Consensus 369 ~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~ 448 (456)
.. -+.++..+++.+| .+.||++|+.||.+|+.+ +||+|+||+|++.++++|++|||+||||||||+|+
T Consensus 210 g~------~~~~a~~al~~~d-----~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~Ia 277 (307)
T COG1577 210 GE------LVQEAEAALQTGD-----FEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIA 277 (307)
T ss_pred HH------HHHHHHHHHhccc-----HHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEE
Confidence 22 3446778888775 999999999999999999 69999999999999999999999999999999999
Q ss_pred EecCC
Q 048621 449 LVKES 453 (456)
Q Consensus 449 L~~~~ 453 (456)
|++++
T Consensus 278 L~~~~ 282 (307)
T COG1577 278 LAKNE 282 (307)
T ss_pred Eeccc
Confidence 99853
No 12
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=2.7e-45 Score=370.32 Aligned_cols=298 Identities=16% Similarity=0.197 Sum_probs=227.5
Q ss_pred EEEEecceecccccccccC-CCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCC-ccc-cccCCCc
Q 048621 49 VYARSPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPD-QEL-DLKHHQW 125 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~-G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~-~~~-~~~~~~w 125 (456)
+.++||||++|+|||+||| |++||++||++++++.++++ ++ ..++|.+.+.......|..... ... .+....|
T Consensus 1 ~~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~---~~-~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01220 1 IVVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDA---DG-AADVIISSDLGPQPVGWRRHDGRLVVRDPDARSA 76 (358)
T ss_pred CeeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeC---CC-CceEEEecCCCCCceEEEecCCceeecccccccc
Confidence 3678999999999999998 88999999999999999998 54 6667766543211223332110 001 1123469
Q ss_pred chhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCC----CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 126 GHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTG----SGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 126 ~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g----~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
.+|+++++..+..++...+.. ..||++.|.|+||++ +|||||||++||++.|++++++.++++++++++|+.+
T Consensus 77 ~~~v~~~i~~~~~~~~~~~~~---~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~ 153 (358)
T TIGR01220 77 LAYVVSAIETVERYAGERNQK---LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLA 153 (358)
T ss_pred hHHHHHHHHHHHHHHHhcCCC---CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999988887777777766653 569999999999984 6999999999999999999999999999999999999
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCC----------------------CceeeccCCCCcEEEEEecCCcccccc
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNP----------------------IRATDVQLPAGGTFVIAHSLAESLKAV 259 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~----------------------~~~~~~~~p~~~~~ll~~s~~~~~~~~ 259 (456)
|+.+|+++|++|+++++|||. +.|-++.+ ..++++++|.+++++++||+.++++.
T Consensus 154 E~~~~g~~sg~D~~a~~~GG~--i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~- 230 (358)
T TIGR01220 154 TAELQPKGSCGDIAASTYGGW--IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTA- 230 (358)
T ss_pred HhhhCCCCCcchhhhhhhCCE--EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcH-
Confidence 998888899999999999982 44444432 24678888878999999999864422
Q ss_pred ccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHh
Q 048621 260 TAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIE 339 (456)
Q Consensus 260 ~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 339 (456)
++++.|++.+.+.+ +.+.
T Consensus 231 -------------------------------------------------------~~v~~V~~~~~~~~---~~~~---- 248 (358)
T TIGR01220 231 -------------------------------------------------------SLVSDVHRRKWRGS---ASYQ---- 248 (358)
T ss_pred -------------------------------------------------------HHHHHHHHHhhcCh---HHHH----
Confidence 23333333222110 0000
Q ss_pred hhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhh-----cC
Q 048621 340 EKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVL-----YE 414 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l-----~~ 414 (456)
...+++.. .+.+++++|+++| ++.||++|+++|.+|+.+ .+
T Consensus 249 -----------------------~~l~~~~~------i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~ 294 (358)
T TIGR01220 249 -----------------------RFLETSTD------CVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVG 294 (358)
T ss_pred -----------------------HHHHHHHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCC
Confidence 01222232 3456788999876 999999999999999987 36
Q ss_pred CCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCC
Q 048621 415 CSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 415 vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
||+|++|+|++.+++.|+ |||+||||+|||+|+|++++
T Consensus 295 vs~~~l~~li~~a~~~ga-~aKlsGAGgGg~~ial~~~~ 332 (358)
T TIGR01220 295 IETEKLKALCDAAEAYGG-AAKPSGAGGGDCGIAILDAE 332 (358)
T ss_pred cCCHHHHHHHHHHhhcCc-eecCCCCCCcCEEEEEeCCc
Confidence 999999999999999998 99999999999999999764
No 13
>PLN02677 mevalonate kinase
Probab=100.00 E-value=6.9e-45 Score=367.39 Aligned_cols=304 Identities=23% Similarity=0.289 Sum_probs=216.9
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCC---Cc-cc-cc-c
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEP---DQ-EL-DL-K 121 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~---~~-~~-~~-~ 121 (456)
.+.++||||++|+|||+||+|++++++||++++++.++++....+...|.+...+..+. ..|+++. .. .. .+ .
T Consensus 2 ~i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~-~~~~~~~l~~~~~~~~~~~~ 80 (387)
T PLN02677 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLE-FSWPLARIKEALPDLGTPCP 80 (387)
T ss_pred ceEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCce-EEechHhhhhhhcccccccc
Confidence 36889999999999999999999999999999999998751101224455433332221 1233211 00 00 00 1
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCC-------------------CCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDV-------------------GPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALM 182 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~-------------------~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~ 182 (456)
...| .+...++..+..++...+.+. ....++++.|+|+||+|+|||||||++||++.|+.
T Consensus 81 ~~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~ 159 (387)
T PLN02677 81 STPT-SCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALL 159 (387)
T ss_pred cccc-ccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHH
Confidence 1223 345555666666665433210 01357999999999999999999999999999999
Q ss_pred HHhC-CCC-------------CHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEE
Q 048621 183 AAFG-VEV-------------PKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVI 248 (456)
Q Consensus 183 ~l~g-~~l-------------s~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll 248 (456)
.+++ +++ +.+++.++|+.+|+.+|+++|++|+++++||| .+.|+...+++++.|.++.++|
T Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv 234 (387)
T PLN02677 160 AASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGN-----MIKFKSGELTRLQSNMPLKMLI 234 (387)
T ss_pred HHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCC-----eEEEcCCCceecCCCCCceEEE
Confidence 9998 322 23688899999999999999999999999998 4566665667777777899999
Q ss_pred EecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCC
Q 048621 249 AHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEP 328 (456)
Q Consensus 249 ~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~ 328 (456)
+||+++++|+ ++|+.|++...+++
T Consensus 235 ~dTgv~~sT~--------------------------------------------------------~lV~~V~~~~~~~p 258 (387)
T PLN02677 235 TNTRVGRNTK--------------------------------------------------------ALVAGVSERALRHP 258 (387)
T ss_pred EECCCCCcHH--------------------------------------------------------HHHHHHHHHHHhCH
Confidence 9999976542 34555555443321
Q ss_pred CCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhc--CCCC--hHHHHHHHHHHHH
Q 048621 329 YMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYS--NLSD--EDKLRRLGDLMND 404 (456)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~--~d~~--~~~~~~lG~Lm~~ 404 (456)
+.+. .+.+++.++ +.++.++|++ +|.. .++++.||++|+.
T Consensus 259 ---~~~~---------------------------~il~~~~~i------~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~ 302 (387)
T PLN02677 259 ---DAMK---------------------------SVFNAVDSI------SEELATIIQSPAEDELSITEKEEKLKELMEM 302 (387)
T ss_pred ---HHHH---------------------------HHHHHHHHH------HHHHHHHHhccccccccccchHHHHHHHHHH
Confidence 0000 122333333 4467778876 2211 1469999999999
Q ss_pred hHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecC
Q 048621 405 SHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKE 452 (456)
Q Consensus 405 sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~ 452 (456)
||.+|+.+ +||+|.||.+++++++.| +|||+||||+|||+|+|+++
T Consensus 303 N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 303 NQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEccc
Confidence 99999998 699999999999999986 79999999999999999975
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=9.3e-45 Score=354.73 Aligned_cols=273 Identities=27% Similarity=0.377 Sum_probs=202.7
Q ss_pred ecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhhhhH
Q 048621 53 SPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICG 132 (456)
Q Consensus 53 APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~ 132 (456)
||||++|+|||+||+|++||++|||+++++.+.++ ++ . +++.+... ... .. ........|.+|++
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~---~~-~-~~i~~~~~--~~~---~~---~~~~~~~~~~~~v~-- 65 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIES---SD-G-SFIESDLG--RGS---LD---DAPQELDGLVSYIA-- 65 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEc---CC-C-ceEecccc--CCc---Hh---HhhHHHHHHHHHHH--
Confidence 79999999999999999999999999999999987 54 3 55544321 100 00 01112356888885
Q ss_pred HHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcc
Q 048621 133 YKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGM 212 (456)
Q Consensus 133 i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~ 212 (456)
.++..+...+ ..++++.+.|+||+++|||||||++||++.|++++++.++++++++++|+.+|+.+++.++++
T Consensus 66 --~~l~~~~~~~-----~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~ 138 (273)
T TIGR00549 66 --EALSYFSELN-----PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGI 138 (273)
T ss_pred --HHHHHhhccC-----CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchH
Confidence 4444454322 235999999999999999999999999999999999999999999999999999777777778
Q ss_pred hhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhc
Q 048621 213 DQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAIS 292 (456)
Q Consensus 213 D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~ 292 (456)
|++++++|| +++++.... ...+..+.++.+++++|+.+.++..
T Consensus 139 D~~~~~~Gg---~~~~~~~~~-~~~~~~~~~~~lvl~~tg~~~~T~~--------------------------------- 181 (273)
T TIGR00549 139 DTATSTYGG---PVYFEKGEG-EFTKLISLDGYFVIADTGVSGSTKE--------------------------------- 181 (273)
T ss_pred hHHHHhcCC---eEEEEcCCC-ceeeccCCCeEEEEEECCCCCcHHH---------------------------------
Confidence 999999998 445554432 2333344568999999998543211
Q ss_pred ccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHH
Q 048621 293 KVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVY 372 (456)
Q Consensus 293 ~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 372 (456)
+++.|++.+... .+... ...+++.
T Consensus 182 -----------------------~~~~v~~~~~~~---~~~~~---------------------------~~~~~~~--- 205 (273)
T TIGR00549 182 -----------------------AVARVRQLLERF---PELID---------------------------SIMDAIG--- 205 (273)
T ss_pred -----------------------HHHHHHHHHHhC---HHHHH---------------------------HHHHHHH---
Confidence 111111111000 00000 0111211
Q ss_pred HHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEE
Q 048621 373 SEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVL 449 (456)
Q Consensus 373 ~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L 449 (456)
.++.+++++|+++| ++.||++|+++|..++++ ++|+|++|+|++.+++.|++||||||||+|||+|+|
T Consensus 206 ---~~~~~~~~al~~~d-----~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ---ELTLEAKAALQDGD-----VESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred ---HHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 26677889999886 999999999999999886 899999999999999999999999999999999986
No 15
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=1.8e-41 Score=369.30 Aligned_cols=291 Identities=18% Similarity=0.237 Sum_probs=217.1
Q ss_pred EEEEecceecccccccc------cCCCeeeeeecccc----eEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCC-cc
Q 048621 49 VYARSPGRVNLIGEHID------YEGYSVLPMAIRQD----TIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPD-QE 117 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d------~~G~~~l~~AI~~~----~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~-~~ 117 (456)
++++|||||+|+|||+| |+||.|+++||+++ +++.++++ .+ .++++.+.+.+- ...++.... ..
T Consensus 610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~---~d-~~irl~S~d~~~-~~~v~~~~~l~~ 684 (974)
T PRK13412 610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPC---SE-PHIVLRSIDLGA-MEVVRTNEELRD 684 (974)
T ss_pred EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEEC---CC-CeEEEEECCCCC-ceEEecchhhcc
Confidence 56699999999999999 99999999999996 99999998 65 889998865421 112222111 11
Q ss_pred ccccCCCcchhhhhHHH--------------HHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHH
Q 048621 118 LDLKHHQWGHYFICGYK--------------GFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMA 183 (456)
Q Consensus 118 ~~~~~~~w~~~~~~~i~--------------~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~ 183 (456)
. ....+|.+|+++++. .+.+.++..| .|+++.|.|+||+|+|||||||++||++.|+++
T Consensus 685 ~-~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G------~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~ 757 (974)
T PRK13412 685 Y-KKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFG------SGIEITLLAAIPAGSGLGTSSILAATVLGAISD 757 (974)
T ss_pred c-ccccchHhhhhhhheecccccccccchhHHHHHHHHhcC------CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Confidence 1 234568899987653 1222333322 599999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCC-----CceeeccCCC------CcEEEEEecC
Q 048621 184 AFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNP-----IRATDVQLPA------GGTFVIAHSL 252 (456)
Q Consensus 184 l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~-----~~~~~~~~p~------~~~~ll~~s~ 252 (456)
+++.++++++++++|+.+|+.+|+++|++||+++++|| +.++++.+ ..+++++.+. +-.++|+|||
T Consensus 758 ~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG---~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTG 834 (974)
T PRK13412 758 FCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPG---VKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTG 834 (974)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCC---eEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECC
Confidence 99999999999999999999999999999999999999 55666544 1234444332 3479999999
Q ss_pred CccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHH-hhhccCCCCH
Q 048621 253 AESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVK-EFLHEEPYMA 331 (456)
Q Consensus 253 ~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~-~~~~~~~~~~ 331 (456)
+++.++ ++++.|. ....+.
T Consensus 835 itR~T~--------------------------------------------------------~iV~~Vv~~~~~~~---- 854 (974)
T PRK13412 835 ITRTAK--------------------------------------------------------GILAEIVRSMFLNS---- 854 (974)
T ss_pred CeeeHH--------------------------------------------------------HHHHHHHHHHHhCc----
Confidence 854321 1222211 111110
Q ss_pred HHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhh
Q 048621 332 KDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSV 411 (456)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~ 411 (456)
+... .+.+++.. -+.++.++|+++| ++.||++|+++|..++.
T Consensus 855 ~~~~---------------------------~~l~~ig~------La~ea~~ALe~gD-----~~~LG~LMn~~w~ll~~ 896 (974)
T PRK13412 855 TAHL---------------------------QLLHEMKA------HALDMYEAIQRGE-----FEEFGRLVGKTWEQNKA 896 (974)
T ss_pred HHHH---------------------------HHHHHHHH------HHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHh
Confidence 0000 11222222 2456889999886 99999999999999999
Q ss_pred h-cCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCC
Q 048621 412 L-YECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 412 l-~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
+ -+||+|++|+|++.|++ |++|||+||||+|||+|+|+++.
T Consensus 897 L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~ 938 (974)
T PRK13412 897 LDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDP 938 (974)
T ss_pred ccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECCh
Confidence 8 36999999999999976 79999999999999999999543
No 16
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=317.25 Aligned_cols=297 Identities=23% Similarity=0.307 Sum_probs=203.9
Q ss_pred EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCC-------------
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPD------------- 115 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~------------- 115 (456)
..++|||||+|||||+|+||.++++++||+++++.+.+. .+ +++.+.-.+.++ ...|+++.-
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~s---an-~~i~l~l~di~~-~~~w~l~~~~~~l~~~~~~~~~ 79 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTS---AN-DRILLQLPDISI-EKAWSLADFNGALPEQRSTYES 79 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEec---CC-CeEEEecccCCc-eEEEEhhhhhhhhhhhhhhhhc
Confidence 589999999999999999999999999999999999776 43 666664333222 234554320
Q ss_pred -c-c-----------ccc--cCCCcchhhhhHHHHHHHHH-----HHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHH
Q 048621 116 -Q-E-----------LDL--KHHQWGHYFICGYKGFYEYV-----KAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVC 175 (456)
Q Consensus 116 -~-~-----------~~~--~~~~w~~~~~~~i~~v~~~l-----~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~v 175 (456)
+ + +.. .+..-..+-. ++-.++..+ +..| ..+.+.+.++|++|+|+|||||||++|
T Consensus 80 ~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~-a~~~~lYlf~~l~~~~~g----~lp~~~v~v~SelP~GaGLGSSAa~sv 154 (397)
T KOG1511|consen 80 VQTPASEVRVELLKQLGGLLENQEKVKEHL-AGLSFLYLFLGLCLRAPG----TLPALTVVVDSELPLGAGLGSSAAISV 154 (397)
T ss_pred cCCcchhhhHHHHHHhhhhhhcchhhhHHH-HHHHHHHHHHHhhhcccC----CCcceEEEEeccCCCcCCcchhHHHHH
Confidence 0 0 000 0000000000 111111111 1112 123399999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCH-----------HHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCCC-ceeeccCCCC
Q 048621 176 SSTIALMAAFGVEVPK-----------KEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNPI-RATDVQLPAG 243 (456)
Q Consensus 176 A~~~al~~l~g~~ls~-----------~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~-~~~~~~~p~~ 243 (456)
+++.+++.+.|.--++ +-+-++|++.|+.+|+.+||+|+++|+||| .+.|++. .++.+...+.
T Consensus 155 ~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~ 229 (397)
T KOG1511|consen 155 ALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGG-----LISFKKGVEIESLKHLPP 229 (397)
T ss_pred HHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCc-----eEEeecCccceecccCCC
Confidence 9999999988753222 446789999999999999999999999999 5777764 7777765557
Q ss_pred cEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhh
Q 048621 244 GTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEF 323 (456)
Q Consensus 244 ~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~ 323 (456)
++++++||.+|++++ ++|..|++.
T Consensus 230 L~illtnTrv~RnTk--------------------------------------------------------~lVa~Vr~~ 253 (397)
T KOG1511|consen 230 LRILLTNTRVPRNTK--------------------------------------------------------ALVAGVREL 253 (397)
T ss_pred ceEEEEccccCccHH--------------------------------------------------------HHHHHHHHH
Confidence 999999999987654 234444443
Q ss_pred hccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCC--ChHHHHHHHHH
Q 048621 324 LHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLS--DEDKLRRLGDL 401 (456)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~--~~~~~~~lG~L 401 (456)
+...| + +.+ .+++.+..+ ..+++.++.+.+. +..+-++|.+|
T Consensus 254 ~~kfP----e-----------vi~---------------~i~~aid~i------s~ea~~il~~e~~~~~~~~Eq~L~eL 297 (397)
T KOG1511|consen 254 LEKFP----E-----------VIK---------------AIFDAIDEI------SLEAVWILQRENDEFSSPKEQKLEEL 297 (397)
T ss_pred HHhhh----H-----------HHH---------------HHHHHHHHH------HHHHHHHHhcccccCCCcHHHHHHHH
Confidence 32211 1 100 012222222 2344555554211 11122259999
Q ss_pred HHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCC
Q 048621 402 MNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 402 m~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
|..||.+|..+ |||+|.+|.++...++.| +.+||||||+|||+|+|++++-
T Consensus 298 i~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL~~~~ 348 (397)
T KOG1511|consen 298 IRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLLKPGT 348 (397)
T ss_pred HHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceEEEEECCCC
Confidence 99999999998 799999999999999999 6899999999999999998763
No 17
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.3e-39 Score=326.04 Aligned_cols=285 Identities=21% Similarity=0.251 Sum_probs=202.5
Q ss_pred CCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcc
Q 048621 47 PDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWG 126 (456)
Q Consensus 47 ~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~ 126 (456)
...+..+|||++|||||+|+||.++|..+|++++.+.++.. +....+.+.+....+ +. ....-.
T Consensus 9 ~~~~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~---~~~~~~~~~~~~~~~-----~~--------~~~~~~ 72 (328)
T PTZ00298 9 TTGKHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELT---KGVPGLQVVDQRPAV-----PG--------YIVEKR 72 (328)
T ss_pred cccCCCcCeeEEEEecceeecCCchhhhecccceEEEEEEc---cCCCCceeccccccc-----cc--------hHHHhH
Confidence 33577899999999999999999999999999988777754 211223322111111 00 000012
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIG 206 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~ 206 (456)
|.+. +.+..+++..+... ...|++|.|.++||+++|||||||++||++.|++++++.++++++++++|+.+|+.++
T Consensus 73 n~~~---~a~~~~~~~~~~~~-~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~ 148 (328)
T PTZ00298 73 EEQR---KAHQLVLRHLNIDT-SVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYH 148 (328)
T ss_pred HHHH---HHHHHHHHHHhccc-CCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 3332 22222233334320 1259999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCcchhhhhhhccCCcEEEeecCC--CceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhC
Q 048621 207 AQSGGMDQAISIMAKSGFAELIDFNP--IRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLG 284 (456)
Q Consensus 207 ~~~g~~D~~~s~~Gg~~~~~~i~~~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~ 284 (456)
+.++++|++++++|| +.+++... ..++++++|.++.+++++|+++.++..
T Consensus 149 g~~sG~D~~~~~~Gg---~~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~------------------------- 200 (328)
T PTZ00298 149 GTPSGADNTAATYGG---LISYRRVNGKSVFKRIAFQQPLYLVVCSTGITASTTK------------------------- 200 (328)
T ss_pred CCCChHHHHHHHcCC---eEEEecCCCccceeEecCCCCCeEEEEECCCchhHHH-------------------------
Confidence 777778999999998 33443222 245677777788999999998543211
Q ss_pred CCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHH
Q 048621 285 MKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKL 364 (456)
Q Consensus 285 ~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
+++.+++..... .+.+. .+
T Consensus 201 -------------------------------~~~~v~~~~~~~---p~~~~---------------------------~~ 219 (328)
T PTZ00298 201 -------------------------------VVGDVRKLKENQ---PTWFN---------------------------RL 219 (328)
T ss_pred -------------------------------HHHHHHHHHhcC---HHHHH---------------------------HH
Confidence 111111100000 00000 12
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcc
Q 048621 365 HQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGG 444 (456)
Q Consensus 365 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG 444 (456)
.+++.+ ++.++..+|.++| ++.||++|+++|++++++ ++++|++|++++.+++.|++|+||||+|+||
T Consensus 220 ~~~~~~------~~~~~~~al~~~d-----~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG 287 (328)
T PTZ00298 220 LENYNA------CVSEAKEALQKGN-----LFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGG 287 (328)
T ss_pred HHHHHH------HHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCe
Confidence 233333 3556778898875 999999999999999976 7999999999999999999999999999999
Q ss_pred eEEEEecC
Q 048621 445 CAVVLVKE 452 (456)
Q Consensus 445 ~~i~L~~~ 452 (456)
|+++|+++
T Consensus 288 ~v~al~~~ 295 (328)
T PTZ00298 288 LVVALAAS 295 (328)
T ss_pred EEEEEecc
Confidence 99999975
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=1.9e-38 Score=314.64 Aligned_cols=271 Identities=26% Similarity=0.327 Sum_probs=197.7
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
++.++|||||+|+|||+|+||+++|++||++++++.++++ ++ .+.+.+. +. ....|.+
T Consensus 1 ~~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~---~~--~~~i~~~---~~--------------~~~~~~~ 58 (302)
T PRK03926 1 MVLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFN---DD--SIYIESD---YG--------------KTGEKHP 58 (302)
T ss_pred CeEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEEC---CC--ceEEecc---cc--------------cccchhH
Confidence 3688999999999999999999999999999999999887 33 3444321 10 0113545
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
++. .++..+.+... ..|+++.+.++||+++|||||||+++|++.|++++++.++++++++++|..+|+..++
T Consensus 59 ~~~----~~~~~~~~~~~----~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G 130 (302)
T PRK03926 59 YVS----AAIEKMREEAD----KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQG 130 (302)
T ss_pred HHH----HHHHHHHHhcC----CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 664 34444443321 2499999999999999999999999999999999999999999999999999997777
Q ss_pred CCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCc
Q 048621 208 QSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKP 287 (456)
Q Consensus 208 ~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~ 287 (456)
.++++|++++++|| +.+..... ++++| ++.+++++|+.+.++..
T Consensus 131 ~~sg~D~~~~~~Gg---~~~~~~~~----~l~~~-~~~~vl~~~~~~~sT~~---------------------------- 174 (302)
T PRK03926 131 AASPTDTYVSTMGG---FVTIPDRK----KLPFP-ECGIVVGYTGSSGSTKE---------------------------- 174 (302)
T ss_pred CCchHHHHHHhcCC---eEEEcCCC----cCCCC-CceEEEEECCCCCcHHH----------------------------
Confidence 77788999999998 33332211 44444 78899999987543211
Q ss_pred chhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHH
Q 048621 288 QEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQR 367 (456)
Q Consensus 288 ~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (456)
++..+++..... .+.+.. ..++
T Consensus 175 ----------------------------~~~~~~~~~~~~---~~~~~~---------------------------~~~~ 196 (302)
T PRK03926 175 ----------------------------LVANVRKLKEEY---PELIEP---------------------------ILSS 196 (302)
T ss_pred ----------------------------HHHHHHHHHHhC---HHHHHH---------------------------HHHH
Confidence 001111100000 000000 0111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEE
Q 048621 368 AAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAV 447 (456)
Q Consensus 368 ~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i 447 (456)
..+ .+.++..++.++| ++.||++|+.+|..++. +++++|+++++++.+++.|++|+||||+|+|||++
T Consensus 197 ~~~------~~~~~~~al~~~d-----~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~ 264 (302)
T PRK03926 197 IGK------ISEKGEELILSGD-----YVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMV 264 (302)
T ss_pred HHH------HHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEE
Confidence 111 1234557787775 99999999999987765 58999999999999999999999999999999999
Q ss_pred EEecCCC
Q 048621 448 VLVKESI 454 (456)
Q Consensus 448 ~L~~~~~ 454 (456)
+|++++.
T Consensus 265 ~l~~~~~ 271 (302)
T PRK03926 265 ALAAPEK 271 (302)
T ss_pred EEecccc
Confidence 9997654
No 19
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=294.69 Aligned_cols=284 Identities=20% Similarity=0.307 Sum_probs=208.1
Q ss_pred CEEEEecceeccccccccc------CCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 48 DVYARSPGRVNLIGEHIDY------EGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~------~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
+++.+||.||.|.|+.||+ +||.|++++||+|+++.+.+. .+ .+|++.- +. ..+ .+. +...
T Consensus 1 Mii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~---~d-~~I~~~~-~~----~~~-v~~---~~~~ 67 (333)
T COG2605 1 MIISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKG---FD-DEIRVRY-DR----TEF-VKS---YLEN 67 (333)
T ss_pred CcccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccC---CC-ceEEEec-ch----HHh-hhh---hHhh
Confidence 3567899999999999998 588999999999999999988 65 7787761 11 111 000 1011
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
.+. ..+++.++.. ++.-.| .+.+++...+|+|+|+|||||||++||++.|+..+-|..+++++|+++|+++
T Consensus 68 ~h~--~~~~~~l~r~--~l~~~g-----~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~I 138 (333)
T COG2605 68 EHK--PLVVESLKRD--FLEFNG-----GTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEI 138 (333)
T ss_pred cCc--hHHHHHHHHH--HHhhcC-----CCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 121 1232222211 232223 2339999999999999999999999999999999999999999999999999
Q ss_pred hh-hhCCCCCcchhhhhhhccCCcEEEeecCC---CceeeccCCC------CcEEEEEecCCccccccccccchhhHHHH
Q 048621 202 ER-YIGAQSGGMDQAISIMAKSGFAELIDFNP---IRATDVQLPA------GGTFVIAHSLAESLKAVTAATNYNNRVVE 271 (456)
Q Consensus 202 E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~---~~~~~~~~p~------~~~~ll~~s~~~~~~~~~~~~~yn~R~~e 271 (456)
|+ .++..+|.|||++++|||.+ |++|.+ ..++++++.. +.++++++||+.+. .
T Consensus 139 ER~~l~~~gG~QDqYaaA~GGFn---fMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~---S----------- 201 (333)
T COG2605 139 EREDLKIVGGKQDQYAAAFGGFN---FMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQ---S----------- 201 (333)
T ss_pred HHHHhccccccccHHHHHhCCce---EEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccc---h-----------
Confidence 97 89999999999999999965 777765 4566666542 56778888876321 1
Q ss_pred HHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchh-HHHHhhhccCCCCHHHHHHHHhhhhhhhhhccC
Q 048621 272 CRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPF-LAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSS 350 (456)
Q Consensus 272 ~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (456)
++++ .+|++....+ .+.++++.
T Consensus 202 ------------------------------------------s~V~~dQ~~~~~~~~---~~~~e~~~------------ 224 (333)
T COG2605 202 ------------------------------------------SEVIEDQVRNVVDGD---EETLEALH------------ 224 (333)
T ss_pred ------------------------------------------hHHHHHHHHHhhccc---HHHHHHHH------------
Confidence 1111 2222322221 01111110
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhc-CCCcHHHHHHHHHHHh
Q 048621 351 SSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLY-ECSCPELEELVTVCRD 429 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~-~vS~peld~lv~~a~~ 429 (456)
.++. -+.++.++|-++| +..||++|+++|+..+.+. .+|+|.+|+|++.|++
T Consensus 225 ----------------~mk~------~A~~~~~al~~nd-----~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~ 277 (333)
T COG2605 225 ----------------EMKA------LAYEMKDALVRND-----IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK 277 (333)
T ss_pred ----------------HHHH------HHHHHHHHHHhcc-----hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh
Confidence 0111 2335778888875 9999999999999999994 5999999999999999
Q ss_pred CCCceeeecccCCcceEEEEecCCC
Q 048621 430 NGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 430 ~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
.||+|+|++|||+||+++.+|++++
T Consensus 278 ~GA~~gKl~GaG~gGFllf~~~p~k 302 (333)
T COG2605 278 NGAYGGKLSGAGGGGFLLFFCDPSK 302 (333)
T ss_pred cCchhceeeccCCccEEEEEeCccc
Confidence 9999999999999999999999875
No 20
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=5.2e-29 Score=254.92 Aligned_cols=325 Identities=17% Similarity=0.173 Sum_probs=211.8
Q ss_pred EEecceecccccccccC-CCeeeeeecccceEEEEEecccCC--CCCeEEEEecCCCCCceeee--CCCC-cccc-----
Q 048621 51 ARSPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHVSGE--TEKVLKIANVSDKYSLCTYP--AEPD-QELD----- 119 (456)
Q Consensus 51 ~~APgri~L~GEh~d~~-G~~~l~~AI~~~~~v~v~~~~~~~--~~~~i~i~s~~~~~~~~~~~--l~~~-~~~~----- 119 (456)
++||||+.|.||++|+. |++++.+|++.|+++++.+..... +...|+|.|. +|....|. .... ..++
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~Sp--Qf~~~~~~y~~~~~~~~~~~~~~~ 79 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSP--QFSDREWLYKISLNHLTLQSVSAS 79 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCC--CCCCCceEEEEecCCccceeeccc
Confidence 68999999999999996 789999999999999997651100 0013566654 44333222 2110 0000
Q ss_pred -ccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecC-------------------CC--------CCCCCchH
Q 048621 120 -LKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIV-------------------PT--------GSGLSSSA 171 (456)
Q Consensus 120 -~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~I-------------------P~--------g~GLGSSA 171 (456)
.....-..|+.++|..+..++...+.+.....+++|+|.||. +. +.||||||
T Consensus 80 ~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSA 159 (454)
T TIGR01219 80 DSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (454)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHH
Confidence 001122268888999999998775432112568999998877 22 69999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhhhhCC-CCCcchhhhhhhccCCcEEEeecCCC----
Q 048621 172 AFVCSSTIALMAAFGVEV-------------PKKEIAQLTCECERYIGA-QSGGMDQAISIMAKSGFAELIDFNPI---- 233 (456)
Q Consensus 172 A~~vA~~~al~~l~g~~l-------------s~~el~~la~~~E~~~~~-~~g~~D~~~s~~Gg~~~~~~i~~~~~---- 233 (456)
|++||++.||+.+++..+ +++.+.++|+.+|..+|+ ++|+.|.++++||| +.|..|++.
T Consensus 160 AvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~ 236 (454)
T TIGR01219 160 AMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISF 236 (454)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhh
Confidence 999999999999999877 789999999999987777 68999999999998 688888762
Q ss_pred ------------------------ceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcch
Q 048621 234 ------------------------RATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQE 289 (456)
Q Consensus 234 ------------------------~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~ 289 (456)
+++++++|++++++++||+.+++|..
T Consensus 237 ~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT~~------------------------------ 286 (454)
T TIGR01219 237 LQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSSTPS------------------------------ 286 (454)
T ss_pred hhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCcHH------------------------------
Confidence 33456677788888888887765433
Q ss_pred hhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhh--hhhhhHHHHH
Q 048621 290 AISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLN--AAKHYKLHQR 367 (456)
Q Consensus 290 ~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r 367 (456)
||+.|++...+.+-..+++-+.++..-..+. ..+..|. .++...-|..
T Consensus 287 --------------------------lV~~V~~~~~~~p~~s~~i~~~l~~aN~~~~----~~l~~l~~~~~~~~~~y~~ 336 (454)
T TIGR01219 287 --------------------------MVGKVKKWQMSDPEESRENWQNLSDANLELE----TKLNDLSKLAKDHWDVYLR 336 (454)
T ss_pred --------------------------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhccccchhhh
Confidence 3333333333221111111111110000000 0000000 0000000111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCC---ChHHHHHHHHHHHHhHHhhhhhc-----CCCcHHHHHHHHHHHhC-CCceeeec
Q 048621 368 AAHVYSEAKRVYAFKDTVYSNLS---DEDKLRRLGDLMNDSHHSCSVLY-----ECSCPELEELVTVCRDN-GALGARLT 438 (456)
Q Consensus 368 ~~~~~~E~~rv~~~~~al~~~d~---~~~~~~~lG~Lm~~sh~~lr~l~-----~vS~peld~lv~~a~~~-GalGaKlt 438 (456)
.++.+.++.. ...++..+.+.|.++...||.+. .|-+|++-+|++.+.+. ||+|||.+
T Consensus 337 -------------~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vp 403 (454)
T TIGR01219 337 -------------VIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVP 403 (454)
T ss_pred -------------hhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecC
Confidence 1122322200 01148889999999999999885 37799999999999885 99999999
Q ss_pred ccCCcceEEEEecCC
Q 048621 439 GAGWGGCAVVLVKES 453 (456)
Q Consensus 439 GaG~GG~~i~L~~~~ 453 (456)
|||||+|+++|+.++
T Consensus 404 GAGGgDa~~~l~~~~ 418 (454)
T TIGR01219 404 GAGGFDAIFAITLGD 418 (454)
T ss_pred CCCccceEEEEecCC
Confidence 999999999998663
No 21
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=2e-26 Score=226.74 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=178.7
Q ss_pred EEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.++|||||+| +|+|.| |+..++|.+||+++++|.+++. .+ ..+++...... .+ .
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~---~~-~~~~i~~~~~~-------~~---------~ 62 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKL---KE-DGIVVESNNRY-------VP---------N 62 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEEC---CC-CCEEEEeCCCC-------CC---------C
Confidence 67899999999 899999 7778999999999999999987 43 45666532110 10 1
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.|.|++. +.+..+++..+. ..|++|.|.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 63 ~~~n~~~---~~~~~~~~~~~~----~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g- 134 (286)
T PRK00128 63 DERNLAY---KAAKLLKERYNI----KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG- 134 (286)
T ss_pred CCCcHHH---HHHHHHHHhcCC----CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC-
Confidence 2445554 222222333343 36899999999999999999999999999999999999999999999999886
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHh
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKL 283 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~ 283 (456)
.|..++++|| +.+.........+++.+++..+++++|+...+|.. +.+
T Consensus 135 --------~dv~~~~~Gg---~~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~~T~~---------------~~~------ 182 (286)
T PRK00128 135 --------SDVPFCIYGG---TALATGRGEKITPLKSPPSCWVVLAKPDIGVSTKD---------------VYK------ 182 (286)
T ss_pred --------CCCCeEeeCC---eEEEecCCcccccCCCCCCcEEEEEcCCCCCCHHH---------------HHh------
Confidence 4888899998 44454444445666555578899999876432210 000
Q ss_pred CCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhH
Q 048621 284 GMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYK 363 (456)
Q Consensus 284 ~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (456)
.++ .. ..
T Consensus 183 ------------~~~---------------------------~~----------------~~------------------ 189 (286)
T PRK00128 183 ------------NLD---------------------------LD----------------KI------------------ 189 (286)
T ss_pred ------------cCc---------------------------cc----------------cc------------------
Confidence 000 00 00
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCC-CcHHHHHHHHHHHhCCCceeeecccCC
Q 048621 364 LHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYEC-SCPELEELVTVCRDNGALGARLTGAGW 442 (456)
Q Consensus 364 ~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~v-S~peld~lv~~a~~~GalGaKltGaG~ 442 (456)
. ...+..+..++..+| ++.++.+|+ ..+... .+ ..|+++++++.+++.|++|++|||+|
T Consensus 190 -----~-----~~~~~~~~~~l~~~d-----~~~~~~~~~---n~l~~~-~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG- 249 (286)
T PRK00128 190 -----S-----HPDTEKLIEAIEEGD-----YQGICANMG---NVLENV-TLKKYPEIAKIKERMLKFGADGALMSGSG- 249 (286)
T ss_pred -----c-----CcchHHHHHHHhcCC-----HHHHHHhcc---CcHHHH-HHhhChHHHHHHHHHHhcCCCeeEEcccC-
Confidence 0 001223556777765 999999885 334333 44 38999999999999999999999998
Q ss_pred cceEEEEecC
Q 048621 443 GGCAVVLVKE 452 (456)
Q Consensus 443 GG~~i~L~~~ 452 (456)
+|+++|+++
T Consensus 250 -~sv~~l~~~ 258 (286)
T PRK00128 250 -PTVFGLFDD 258 (286)
T ss_pred -ccEEEEeCC
Confidence 999999865
No 22
>PLN02451 homoserine kinase
Probab=99.94 E-value=1.1e-24 Score=220.29 Aligned_cols=269 Identities=20% Similarity=0.285 Sum_probs=186.3
Q ss_pred CEEEEecceecccccccccCCCeeeeeecc-cceEEEEEecccCCC--CCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIR-QDTIVAIRKHVSGET--EKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~-~~~~v~v~~~~~~~~--~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
.+.++||+++.++| .|++++++++| +|.+|.+++. ++ .+.+.|...... .. .++ .++
T Consensus 53 ~~~~~aPA~~ANLG-----pgfD~lG~a~d~l~d~v~~~~~---~~~~~~~~~i~~~~g~--~~--~l~----~~~---- 112 (370)
T PLN02451 53 SVKAFAPATVANLG-----PGFDFLGCAVDGLGDFVTARVD---PGVRPGEVSISEITGD--TG--RLS----KDP---- 112 (370)
T ss_pred eEEEEeccchhhcc-----cChhhhhhhhccCcCEEEEEEC---CCCCcccEEEEEeccc--cc--cCC----CCc----
Confidence 48899999998889 89999999999 9999999986 31 124666532110 00 111 111
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 048621 125 WGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERY 204 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~ 204 (456)
-.|.+. +.+...++..+.. ..|++|.|.++||+++|||||||+++|++.++++++|.++++++++++|.++|..
T Consensus 113 ~~Nlv~---~a~~~~~~~~g~~---~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~ 186 (370)
T PLN02451 113 LRNCAG---IAAIATMKLLGIR---SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAK 186 (370)
T ss_pred ccCcHH---HHHHHHHHHcCCC---CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhch
Confidence 114443 3444445555542 4699999999999999999999999999999999999999999999999999986
Q ss_pred hCCCCCcchhhh-hhhccCCcEEEeecCCCceeeccCC--CCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhH
Q 048621 205 IGAQSGGMDQAI-SIMAKSGFAELIDFNPIRATDVQLP--AGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGI 281 (456)
Q Consensus 205 ~~~~~g~~D~~~-s~~Gg~~~~~~i~~~~~~~~~~~~p--~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~ 281 (456)
+++. .+|+++ +++||. +++....+....++++| +++.+++++++.+.+|.. +.+.+..
T Consensus 187 v~g~--h~Dnva~a~~GG~--v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar~~lp~ 247 (370)
T PLN02451 187 VSGY--HADNIAPALMGGF--VLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MRAALPK 247 (370)
T ss_pred hcCC--CccchhHhhcCCE--EEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HHHHHhh
Confidence 5543 389986 688872 33333445556666665 579999999987533211 1110000
Q ss_pred HhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhh
Q 048621 282 KLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKH 361 (456)
Q Consensus 282 ~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (456)
. +.
T Consensus 248 ~----------------------------------------------~~------------------------------- 250 (370)
T PLN02451 248 E----------------------------------------------IP------------------------------- 250 (370)
T ss_pred h----------------------------------------------cc-------------------------------
Confidence 0 00
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccC
Q 048621 362 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAG 441 (456)
Q Consensus 362 ~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG 441 (456)
.. .++. ...|+...+.+|.++| ++.++++|+..|...... ..++|+++++++.+++.|++|++|||+|
T Consensus 251 --~~---~~v~-~~~~~~~l~~al~~~d-----~~~l~~~m~nD~~~e~~r-~~~~P~l~~l~~~~~~~GA~ga~mSGSG 318 (370)
T PLN02451 251 --MK---HHVW-NCSQAAALVAAILQGD-----AVLLGEALSSDKIVEPTR-APLIPGMEAVKKAALEAGAYGCTISGAG 318 (370)
T ss_pred --hh---hHHH-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhHHHH-hhhCccHHHHHHHHHHCCCeEEEEEccc
Confidence 00 0000 0113334567788775 999999998764444433 3569999999999999999999999998
Q ss_pred CcceEEEEecC
Q 048621 442 WGGCAVVLVKE 452 (456)
Q Consensus 442 ~GG~~i~L~~~ 452 (456)
.|+++|+++
T Consensus 319 --ptvfal~~~ 327 (370)
T PLN02451 319 --PTAVAVIDD 327 (370)
T ss_pred --hheEEEEcC
Confidence 588888864
No 23
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=4.6e-24 Score=212.41 Aligned_cols=266 Identities=15% Similarity=0.217 Sum_probs=180.3
Q ss_pred CEEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccC
Q 048621 48 DVYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKH 122 (456)
Q Consensus 48 ~~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (456)
+++++||||||| .|+|.| |+...++.++|++++++.+++. ++ ..+++.+... .++ .
T Consensus 3 ~~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~---~~-~~~~~~~~~~-------~~~----~---- 63 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNN---GD-GTIRLHCDHP-------QLS----T---- 63 (312)
T ss_pred eEEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEEC---CC-CcEEEEECCC-------CCC----C----
Confidence 367899999999 799999 7777888899999999999987 43 4566643211 011 1
Q ss_pred CCcchhhhhHHHHHHHHH-HHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 123 HQWGHYFICGYKGFYEYV-KAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 123 ~~w~~~~~~~i~~v~~~l-~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
...|++. .++..+ +..+.. ..|++|.|.++||.++|||||||.++|++.+++++++.++++++++++|.++
T Consensus 64 -~~~n~~~----~~~~~~~~~~~~~---~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~ 135 (312)
T PRK02534 64 -DDDNLIY----RAAQLLRKRFPFA---EGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAEL 135 (312)
T ss_pred -CchhHHH----HHHHHHHHHhCCC---CCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 1224553 223333 333432 3689999999999999999999999999999999999999999999999888
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEE-ecCCccccccccccchhhHHHHHHHHHHHHh
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIA-HSLAESLKAVTAATNYNNRVVECRLAAIVLG 280 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~-~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~ 280 (456)
| .|..++++|| +.+...++..+++++.|+++.++++ +++...+|. +|.+.+
T Consensus 136 g---------~dv~~~~~GG---~~~~~~~g~~~~~~~~~~~~~~vv~~~p~~~~~T~---------------~a~~~~- 187 (312)
T PRK02534 136 G---------SDVPFCIAGG---TQLCFGRGEILEPLPDLDGLGVVLAKYPSLSVSTP---------------WAYKTY- 187 (312)
T ss_pred C---------CCCcEEeECC---eEEEECCCCEeEECCCCCCcEEEEEECCCCCccHH---------------HHHHHH-
Confidence 6 4778889998 3333334445677777778999887 687743221 111100
Q ss_pred HHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhh
Q 048621 281 IKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAK 360 (456)
Q Consensus 281 ~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (456)
| +.+++. ++.++.
T Consensus 188 -----------------~-----------------------~~~~~~-~~~~~~-------------------------- 200 (312)
T PRK02534 188 -----------------R-----------------------QQFGDT-YLSDEE-------------------------- 200 (312)
T ss_pred -----------------h-----------------------hhcccc-cccCcc--------------------------
Confidence 1 010000 000000
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHH-hCCCceeeecc
Q 048621 361 HYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCR-DNGALGARLTG 439 (456)
Q Consensus 361 ~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~-~~GalGaKltG 439 (456)
..+... ...|......+|..+| ++.+++.| |+.++....-..|+++++++.++ +.|++|+.|||
T Consensus 201 ---~~~~~~----~~~~~~~l~~al~~~d-----~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSG 265 (312)
T PRK02534 201 ---DFEQRR----QALRSGPLLQAISAKD-----PPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSG 265 (312)
T ss_pred ---cccccc----cccchhHHHHhhhccC-----HHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEEC
Confidence 000000 0112223456677664 88888766 66777664236899999999888 89999999999
Q ss_pred cCCcceEEEEecC
Q 048621 440 AGWGGCAVVLVKE 452 (456)
Q Consensus 440 aG~GG~~i~L~~~ 452 (456)
+| .|+++|+++
T Consensus 266 sG--ptv~~l~~~ 276 (312)
T PRK02534 266 SG--PTCFALFES 276 (312)
T ss_pred cC--cceEEEeCC
Confidence 88 999999975
No 24
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.93 E-value=8e-24 Score=208.47 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=125.9
Q ss_pred EEEecceeccccccccc-CCCe----eeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 50 YARSPGRVNLIGEHIDY-EGYS----VLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 50 ~~~APgri~L~GEh~d~-~G~~----~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
+++|||||||+|+|+++ .+|. ++.++|++++++.+++. .+ ..+++.+.+. .++ .+
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~---~~-~~i~~~~~~~-------~~~----~~----- 62 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVR---SD-DDIRLLKGDF-------DVP----LE----- 62 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEEC---CC-CcEEEeeCCC-------CCC----CC-----
Confidence 56899999999999987 4454 99999999999999987 44 5566654221 111 11
Q ss_pred cchhhhhHHHHHHHHHHHc-CCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 125 WGHYFICGYKGFYEYVKAK-GLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~-g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.|++..++ ..+.+. +.......|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 63 -~nlv~~a~----~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg- 136 (293)
T TIGR00154 63 -ENLIYRAA----QLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG- 136 (293)
T ss_pred -CcHHHHHH----HHHHHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 16775333 333332 31100146899999999999999999999999999999999999999999999998885
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
.|...+++|| ..+........++++.++++.+++++++.+.+
T Consensus 137 --------~Dv~~~~~gg---~~~~~g~ge~~~~l~~~~~~~~vl~~p~~~~s 178 (293)
T TIGR00154 137 --------ADVPFFVSGH---AAFATGVGEIITPFEDPPEKWVVIAKPHVSIS 178 (293)
T ss_pred --------CCcceEEECC---eEEEEecCcEEEECCCCCCcEEEEEcCCCCcC
Confidence 5888899998 34444344445666555578899999987543
No 25
>PRK01212 homoserine kinase; Provisional
Probab=99.91 E-value=1.4e-22 Score=201.03 Aligned_cols=260 Identities=23% Similarity=0.289 Sum_probs=180.0
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCC-CCe--EEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGET-EKV--LKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~-~~~--i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
++.+++|++...+| .|+.+++++|+.|.++.+++. .+ ... +++..... . .++ .++ +
T Consensus 3 ~~~v~~pat~anlg-----~gfd~lG~al~~~d~l~~~~~---~~~~~~~~~~~~~~~~----~--~~p----~~~-~-- 61 (301)
T PRK01212 3 MVKVRVPATSANLG-----PGFDSLGLALSLYDEVLVGDV---VSVEAEFSIEVIGEGA----D--KLP----LDP-E-- 61 (301)
T ss_pred eEEEEEecchhhcc-----cChhhhhccccCccEEEEEEc---cCCCCceEEEEEecCC----C--cCC----CCC-c--
Confidence 47899999999999 899999999999999999876 32 012 44432110 0 111 110 1
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 048621 125 WGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERY 204 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~ 204 (456)
.|.+. +.+..+++..+. ..|++|.|.++||.++|||||||.++|++.+++++++.+++.++++++|.++|.
T Consensus 62 -~Nli~---~a~~~~~~~~~~----~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~- 132 (301)
T PRK01212 62 -KNLVY---QAALKFLEKLGK----PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG- 132 (301)
T ss_pred -cccHH---HHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-
Confidence 13443 333333344453 368999999999999999999999999999999999999999999999999994
Q ss_pred hCCCCCcchhhhhhhccCCcEEEe-ecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHh
Q 048621 205 IGAQSGGMDQAISIMAKSGFAELI-DFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKL 283 (456)
Q Consensus 205 ~~~~~g~~D~~~s~~Gg~~~~~~i-~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~ 283 (456)
+..|...+++|| +.+. +..+..++++++|+++.+++++++.+.+|. .+.+
T Consensus 133 -----~~ddv~~~l~GG---~~~~~~g~g~~~~~~~~~~~~~~vlv~p~~~~sT~---------------~a~~------ 183 (301)
T PRK01212 133 -----HPDNVAPALLGG---LVLALEENGVISVKIPVFDDLKWVVAIPNIELSTA---------------EARA------ 183 (301)
T ss_pred -----CHHHHHHHHhCC---EEEEEECCceEEEEecCCCCeEEEEEECCCcCCHH---------------HHHH------
Confidence 223555689998 3334 345566788877778889999987642211 1100
Q ss_pred CCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhH
Q 048621 284 GMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYK 363 (456)
Q Consensus 284 ~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (456)
.++.. +..+
T Consensus 184 ---------------------------------------~l~~~-~~~~------------------------------- 192 (301)
T PRK01212 184 ---------------------------------------VLPKQ-YSLK------------------------------- 192 (301)
T ss_pred ---------------------------------------hCcCc-CCHH-------------------------------
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHH-HhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCC
Q 048621 364 LHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMN-DSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGW 442 (456)
Q Consensus 364 ~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~-~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~ 442 (456)
+.+.+..|+..+..+|.++| ++.++++|+ ..|+..+.. .+|+++.+++.+++.|++|++|||+|
T Consensus 193 ------~~~~~~~~~~~l~~al~~~d-----~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG- 257 (301)
T PRK01212 193 ------DAVFNSSRAALLVAALYTGD-----YELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG- 257 (301)
T ss_pred ------HHHHHHHHHHHHHHHHhhCC-----HHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh-
Confidence 01111234555778888775 899999984 345555433 36999999999999999999999987
Q ss_pred cceEEEEecCC
Q 048621 443 GGCAVVLVKES 453 (456)
Q Consensus 443 GG~~i~L~~~~ 453 (456)
+|+++|++++
T Consensus 258 -ptv~~l~~~~ 267 (301)
T PRK01212 258 -PTVFALCDKE 267 (301)
T ss_pred -hheeEEeccc
Confidence 8999999765
No 26
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.91 E-value=2.7e-22 Score=193.97 Aligned_cols=259 Identities=24% Similarity=0.311 Sum_probs=191.8
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
.+++++|+...++| .|++++++|+++|..+.+... .+ +++|....... .. +| .++. |
T Consensus 3 ~~~v~aPASSANlG-----pGFD~lGlAl~~~~~~~v~~~---~~--~~~i~~~g~~~--~~--iP----~~~~-----n 59 (299)
T COG0083 3 MMKVRVPASSANLG-----PGFDVLGLALDLYNDVVVVEV---VD--KFEIEVEGEGA--DK--IP----LDPE-----N 59 (299)
T ss_pred eEEEEEeecccccC-----CCccceeeeccccCcEEEEEe---cC--cEEEEEecccc--cC--CC----CCcc-----e
Confidence 36899999999999 999999999999999888876 32 55555433210 01 21 2222 2
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
.+ .+.+...+++.|.. .+++|.++++||.++|||||||.+||.+.|++++++.+++++++.++|.+.|.
T Consensus 60 ~~---~~~~~~~~~~~~~~----~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg---- 128 (299)
T COG0083 60 LV---YQAALKFLEALGIE----AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG---- 128 (299)
T ss_pred eH---HHHHHHHHHHhCCC----ccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC----
Confidence 22 25566667777753 44999999999999999999999999999999999999999999999999993
Q ss_pred CCCcchhhh-hhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCC
Q 048621 208 QSGGMDQAI-SIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMK 286 (456)
Q Consensus 208 ~~g~~D~~~-s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~ 286 (456)
.-|+.+ +++||. .+..+-.+.....+++|.++.++++.++.+-+|. +|.++|
T Consensus 129 ---HpDNVapa~lGG~--~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~sT~---------------~aR~vL------- 181 (299)
T COG0083 129 ---HPDNVAPAVLGGL--VLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTA---------------EARKVL------- 181 (299)
T ss_pred ---CCchHHHHhhCCE--EEEeecCCceEEEccCCcceEEEEEeCCccccHH---------------HHHHhc-------
Confidence 578875 899992 2222224566778888889999999998753321 222222
Q ss_pred cchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHH
Q 048621 287 PQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQ 366 (456)
Q Consensus 287 ~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (456)
+.. |+.++.
T Consensus 182 --------------------------------------P~~-~~~~da-------------------------------- 190 (299)
T COG0083 182 --------------------------------------PKS-YSRKDA-------------------------------- 190 (299)
T ss_pred --------------------------------------ccc-CCHHHH--------------------------------
Confidence 221 222211
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHH-HhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcce
Q 048621 367 RAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMN-DSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGC 445 (456)
Q Consensus 367 r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~-~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~ 445 (456)
+.-..|+.-++.+|.++| .+.+...|. .-|+..|.-+ -|.++++.+.+.+.|++|+-+|||| -+
T Consensus 191 -----V~n~s~~a~lv~al~~~~-----~~l~~~~~~D~ihepyR~~L---~P~~~~v~~~a~~~gA~g~~lSGAG--PT 255 (299)
T COG0083 191 -----VFNLSRAALLVAALLEGD-----PELLRAMMKDVIHEPYRAKL---VPGYAEVREAALEAGALGATLSGAG--PT 255 (299)
T ss_pred -----HHHHHHHHHHHHHHHcCC-----HHHHHHHhccccchhhhhhh---CccHHHHHHHHhhCCceEEEEecCC--Ce
Confidence 111225556788898874 777777776 7899999876 7999999999999999999999998 89
Q ss_pred EEEEecCC
Q 048621 446 AVVLVKES 453 (456)
Q Consensus 446 ~i~L~~~~ 453 (456)
+++|+++.
T Consensus 256 i~al~~~~ 263 (299)
T COG0083 256 VFALADES 263 (299)
T ss_pred EEEEeccc
Confidence 99999873
No 27
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.91 E-value=1.3e-22 Score=201.06 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=171.7
Q ss_pred EEEEecceecccccccccCCCeeeeeecccceEEEEEecccC-CCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSG-ETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~-~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
+++++|+...++| .|++++++|+++|.++.+...... .....+++..... . .+| .++ + .|
T Consensus 1 ~~v~vpatsaNlg-----~GfD~lg~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~p----~~~-~---~N 61 (302)
T TIGR00191 1 FRVKVPASSANLG-----PGFDVLGAALSLYLGLTVTDVVAQESDDTEIEAEGEGV----E--KIP----TEP-T---DN 61 (302)
T ss_pred CEEEEecchhccc-----cChhhhhhhccccceEEEEeeecccCCCceEEEEeccc----c--cCC----CCc-c---cc
Confidence 4689999999999 999999999999999988862000 2111344442110 0 111 110 1 24
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
.+. +.+...++..+.+ ..|++|.+.|+||+++|||||||.++|++.+++++++.++++++++++|.++|.
T Consensus 62 lv~---~a~~~~~~~~g~~---~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~---- 131 (302)
T TIGR00191 62 LIY---QVAKRFLDQLGIR---MPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG---- 131 (302)
T ss_pred cHH---HHHHHHHHHcCCC---CCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC----
Confidence 453 3333334444531 268999999999999999999999999999999999999999999999999994
Q ss_pred CCCcchh-hhhhhccCCcEEEeecCCCceeeccCC--CCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhC
Q 048621 208 QSGGMDQ-AISIMAKSGFAELIDFNPIRATDVQLP--AGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLG 284 (456)
Q Consensus 208 ~~g~~D~-~~s~~Gg~~~~~~i~~~~~~~~~~~~p--~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~ 284 (456)
..|+ .++++|| +.+.......+..+++| +++.+++++|+.+.+|.. +.+.
T Consensus 132 ---h~Dnv~~~l~GG---~~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~---------------a~~~------ 184 (302)
T TIGR00191 132 ---HPDNVAPALLGG---FQLAFVEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAE---------------ARAV------ 184 (302)
T ss_pred ---CcccHHHHhccC---EEEEEEcCCceEEEEeCCCCCEEEEEEECCCcccHHH---------------HHHh------
Confidence 3675 5688998 33333333334454443 579999999987433211 1010
Q ss_pred CCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHH
Q 048621 285 MKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKL 364 (456)
Q Consensus 285 ~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
+++. ++..+. +
T Consensus 185 ---------------------------------------lp~~-~~~~~~-----------------------------v 195 (302)
T TIGR00191 185 ---------------------------------------LPKA-YPRQDL-----------------------------V 195 (302)
T ss_pred ---------------------------------------Cccc-CCHHHH-----------------------------H
Confidence 0000 000000 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHh--HHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCC
Q 048621 365 HQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDS--HHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGW 442 (456)
Q Consensus 365 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~s--h~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~ 442 (456)
+ . ..|+..++.+|.+++ + .+++++..+ |+..+.. .+|+++++++.+++.|++|++|||+|
T Consensus 196 ~-~-------~~~~~~l~~al~~~~-----~-~l~~~~~~d~l~e~~~~~---l~p~l~~i~~~~~~~Ga~g~~lSGsG- 257 (302)
T TIGR00191 196 F-N-------LSHLAGLVHAIYQKK-----P-DLGAIMMKDRIHQPYRES---LIPNLFKIKQAALEKGAYGITISGSG- 257 (302)
T ss_pred H-H-------HHHHHHHHHHHHcCC-----H-HHHHHHcccccchhhHhh---hCCCHHHHHHHHHHCCCeEEEEEchh-
Confidence 0 0 012223446676652 3 467776655 5666643 48999999999999999999999998
Q ss_pred cceEEEEecCC
Q 048621 443 GGCAVVLVKES 453 (456)
Q Consensus 443 GG~~i~L~~~~ 453 (456)
+|+++|++++
T Consensus 258 -ptv~al~~~~ 267 (302)
T TIGR00191 258 -PTILAMADEE 267 (302)
T ss_pred -hhheEEecch
Confidence 8999999765
No 28
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.91 E-value=2.7e-22 Score=194.35 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=108.4
Q ss_pred eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhhhhHHHHHHHHHHH-cCCCCC
Q 048621 70 SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKA-KGLDVG 148 (456)
Q Consensus 70 ~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~-~g~~~~ 148 (456)
.-.+++|++++++.+++. ++ ..+.+.+.. .. |++. .++..+.+ .+.
T Consensus 15 ~g~a~aI~~~~~v~v~~~---~~-~~~~~~~~~-----------------~~-----n~i~----~~~~~~~~~~~~--- 61 (261)
T TIGR01920 15 LGGAFGIDLWVEAKVREG---DE-AGVSTYVRG-----------------NP-----RLIE----RILTAIRSKFGI--- 61 (261)
T ss_pred cceEEEccCceEEEEEEC---CC-CceeeeecC-----------------Ch-----HHHH----HHHHHHHHhcCC---
Confidence 556789999999999887 43 334332210 00 4443 33333433 332
Q ss_pred CCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC--CCCCcchhhhhhhccCCcEE
Q 048621 149 PPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIG--AQSGGMDQAISIMAKSGFAE 226 (456)
Q Consensus 149 ~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~--~~~g~~D~~~s~~Gg~~~~~ 226 (456)
..|+++.+.|+||+++|||||||+++|++.|++++++.++++++++++|+++|+..+ +.+|.+|++++++|| +.
T Consensus 62 -~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~ 137 (261)
T TIGR01920 62 -VDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IV 137 (261)
T ss_pred -CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EE
Confidence 469999999999999999999999999999999999999999999999999998665 668889999999998 55
Q ss_pred EeecCCCcee-eccCCCCcEEEEEecCC
Q 048621 227 LIDFNPIRAT-DVQLPAGGTFVIAHSLA 253 (456)
Q Consensus 227 ~i~~~~~~~~-~~~~p~~~~~ll~~s~~ 253 (456)
+.+.++.... ..++| +..++++.++.
T Consensus 138 ~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 138 ITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred EEeCCCceEEEecCCC-CceEEEEECCC
Confidence 6665554333 34444 45778887765
No 29
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=3.9e-21 Score=190.48 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=166.8
Q ss_pred EEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 50 YARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
+.+||+|||| .|...|-|+. ..+.++|++|.++.+++. +. ..+.+...... .++ .+ +
T Consensus 2 ~~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~---~~-~~i~~~~~~~~------~~~----~~--~-- 63 (300)
T PRK03188 2 TVRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAA---DV-LSVEVSGEGAD------QVP----TD--E-- 63 (300)
T ss_pred eEeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEEC---CC-cEEEEecCCcc------CCC----CC--C--
Confidence 5689999999 4777766654 689999999999999876 32 33444321100 011 11 1
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 048621 125 WGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERY 204 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~ 204 (456)
.|.+. +.+..+++..+. ..|++|.|.|+||+++|||||||.++|++.|+++++|.++++++++++|.++|
T Consensus 64 -~nl~~---~~~~~~~~~~~~----~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig-- 133 (300)
T PRK03188 64 -SNLAW---RAAELLAEHVGR----APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG-- 133 (300)
T ss_pred -ccHHH---HHHHHHHHHhCC----CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 13443 222223333443 36899999999999999999999999999999999999999999999998875
Q ss_pred hCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhC
Q 048621 205 IGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLG 284 (456)
Q Consensus 205 ~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~ 284 (456)
.|..++++|| +.+....+..++++..+.++.++++.++..- +|. .+.+.
T Consensus 134 -------~dv~~~~~GG---~~~~~~~g~~~~~~~~~~~~~~~lv~p~~~~---sT~------------~~~~~------ 182 (300)
T PRK03188 134 -------SDVPFALLGG---TALGTGRGEQLAPVLARGTFHWVLAFADGGL---STP------------AVFRE------ 182 (300)
T ss_pred -------CCcchhhcCC---eEEEEecCCEEEECCCCCCcEEEEEeCCCCC---CHH------------HHHHh------
Confidence 5888889998 4444444445566555445666665554321 110 00000
Q ss_pred CCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHH
Q 048621 285 MKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKL 364 (456)
Q Consensus 285 ~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
++ .....+ .. + .
T Consensus 183 ------------l~-----------------------~~~~~~----------------~~--------~---------~ 194 (300)
T PRK03188 183 ------------LD-----------------------RLREAG----------------DP--------P---------R 194 (300)
T ss_pred ------------ch-----------------------hhhccc----------------cc--------c---------c
Confidence 00 000000 00 0 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCC-CcHHHHHHHHHHHhCCCceeeecccCCc
Q 048621 365 HQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYEC-SCPELEELVTVCRDNGALGARLTGAGWG 443 (456)
Q Consensus 365 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~v-S~peld~lv~~a~~~GalGaKltGaG~G 443 (456)
..++..+..++.++| ++.+|++|+...+. +.+ .+|+++++++.+++.|++|++|||+|.
T Consensus 195 ----------~~~~~~~~~al~~~d-----~~~l~~~~~n~le~----~~~~~~p~l~~l~~~~~~~Galga~lSGsG~- 254 (300)
T PRK03188 195 ----------LGEPDPLLAALRAGD-----PAQLAPLLGNDLQA----AALSLRPSLRRTLRAGEEAGALAGIVSGSGP- 254 (300)
T ss_pred ----------cccHHHHHHHHHcCC-----HHHHHHHhhCcCHH----HHHHhCchHHHHHHHHHHCCCCEEEEEcccc-
Confidence 012334667888875 99999998632222 223 399999999999999999999999985
Q ss_pred ceEEEEecC
Q 048621 444 GCAVVLVKE 452 (456)
Q Consensus 444 G~~i~L~~~ 452 (456)
++++|+++
T Consensus 255 -tv~~l~~~ 262 (300)
T PRK03188 255 -TCAFLCAD 262 (300)
T ss_pred -ceEEEeCC
Confidence 46777764
No 30
>PRK01123 shikimate kinase; Provisional
Probab=99.87 E-value=3.5e-20 Score=181.86 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=112.9
Q ss_pred ceecccccccccCC---CeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhhhh
Q 048621 55 GRVNLIGEHIDYEG---YSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFIC 131 (456)
Q Consensus 55 gri~L~GEh~d~~G---~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~ 131 (456)
+|....|.-||++- +.--+++||+|+++.+++. + ..+.+... +. .++ ..++ +++..
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~~i~l~~~v~v~~~---~--~~~~~~~~---~~----~~~--------~~~~-~~v~~ 61 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAFGIDLKTTATVELS---D--DGGGIEGE---IS----GNP--------DADT-RLIER 61 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEEEeccEEEEEEEEC---C--CCceeeec---cc----CCC--------CCCc-hHHHH
Confidence 34555566666431 1223349999999999886 3 22333211 10 011 1112 45542
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC--CC
Q 048621 132 GYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA--QS 209 (456)
Q Consensus 132 ~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~--~~ 209 (456)
+++. .++..+. ..|+++.+.|+||+++|||||||++||++.|++++++.++++++++++|.++|+..+. .+
T Consensus 62 ~~~~---~~~~~~~----~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g 134 (282)
T PRK01123 62 CVEL---VLERFGI----DYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTG 134 (282)
T ss_pred HHHH---HHHHhCC----CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccC
Confidence 2232 3333343 3599999999999999999999999999999999999999999999999999986554 46
Q ss_pred CcchhhhhhhccCCcEEEeecCCC-ceeeccCCCCcEEEEEecCCc
Q 048621 210 GGMDQAISIMAKSGFAELIDFNPI-RATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 210 g~~D~~~s~~Gg~~~~~~i~~~~~-~~~~~~~p~~~~~ll~~s~~~ 254 (456)
+..|+++++||| +.+.+.... ...+++ .++.+++++++.+
T Consensus 135 ~~~d~~~~~~GG---~~~~~~~~~~~~~~~~--~~~~~vv~~p~~~ 175 (282)
T PRK01123 135 AFDDACASYFGG---VTVTDNREMKLLKRDE--VELDVLVLIPPEG 175 (282)
T ss_pred chhHHHHHHhCC---EEEEcCCCceEEEEec--CCcEEEEEECCCC
Confidence 778999999999 444543332 223333 3588999998864
No 31
>PTZ00299 homoserine kinase; Provisional
Probab=99.86 E-value=1.1e-19 Score=180.97 Aligned_cols=259 Identities=20% Similarity=0.219 Sum_probs=176.7
Q ss_pred EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchh
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHY 128 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~ 128 (456)
+++++|+...++| .|+++|++|+++|.++.+++. +. ..+++..... . .++ .+ -.|.
T Consensus 8 ~~v~vPATsANlG-----pGFDsLGlAL~lyd~v~v~~~---~~-~~i~i~G~~~----~--~lp----~~-----~~nl 63 (336)
T PTZ00299 8 VVLRVPATTANIG-----PAYDTLGMALSIFMELTVEHA---DA-FSMTVEGEGS----E--HIS----TD-----EDNM 63 (336)
T ss_pred EEEEEeccccccc-----ccHHHHhhhcccCcEEEEEEC---CC-CEEEEecCCc----C--CCC----CC-----cchH
Confidence 7999999999999 999999999999999999986 32 3455542110 0 111 11 1134
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhhhh
Q 048621 129 FICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVP---KKEIAQLTCECERYI 205 (456)
Q Consensus 129 ~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls---~~el~~la~~~E~~~ 205 (456)
+. +.+...+...+.. ...|+++.+.++||+++|||||||.+||.+.++++++|.+++ ++++.++|.++|
T Consensus 64 v~---~a~~~~~~~~~~~--~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~E--- 135 (336)
T PTZ00299 64 VV---QACRLAFEEYAHK--SMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFE--- 135 (336)
T ss_pred HH---HHHHHHHHHhcCC--CCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhc---
Confidence 43 3333334444421 135899999999999999999999999999999999999995 899999999999
Q ss_pred CCCCCcchhh-hhhhccCCcEEEeec-CC--CceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhH
Q 048621 206 GAQSGGMDQA-ISIMAKSGFAELIDF-NP--IRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGI 281 (456)
Q Consensus 206 ~~~~g~~D~~-~s~~Gg~~~~~~i~~-~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~ 281 (456)
|..|+. .+++|| +..... .+ ....+++.|+++.++++.++..- +.+|. .+
T Consensus 136 ----GHpDNVapal~GG---~~~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~-~~sT~------------~a------ 189 (336)
T PTZ00299 136 ----GHPDNAAPAIYGG---IQLVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKM-KANTH------------VT------ 189 (336)
T ss_pred ----CCcccHHHHHhCC---EEEEEecCCCceEEEecCCCCCeEEEEEECCCCc-cccHH------------HH------
Confidence 358844 588998 333332 22 22446666678999999886520 00110 01
Q ss_pred HhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhh
Q 048621 282 KLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKH 361 (456)
Q Consensus 282 ~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (456)
++.++++ ++.++
T Consensus 190 ---------------------------------------R~vLP~~-v~~~d---------------------------- 201 (336)
T PTZ00299 190 ---------------------------------------RNLIPTS-VSLED---------------------------- 201 (336)
T ss_pred ---------------------------------------HhhCccc-CcHHH----------------------------
Confidence 1111111 11000
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhh-hcCCCcHHHHHHHHHHHhCCCceeeeccc
Q 048621 362 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSV-LYECSCPELEELVTVCRDNGALGARLTGA 440 (456)
Q Consensus 362 ~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~-l~~vS~peld~lv~~a~~~GalGaKltGa 440 (456)
.+....|+..++.+|.++| ++.+..+.+.-|+-.|. -. .|+++.+.+.+.+.|++|+-||||
T Consensus 202 ---------av~n~~~~~~lv~al~~~d-----~~ll~~~~D~lhep~R~~~l---iP~~~~v~~~~~~~Ga~g~~lSGS 264 (336)
T PTZ00299 202 ---------AVFNISRTSILVLALSTGD-----LRMLKSCSDKLHEQQRSDAL---FPHFRPCVKAAREAGAHYAFLSGA 264 (336)
T ss_pred ---------HHHhhhHHHHHHHHHHhCC-----HHHHHhchhcccCccccccc---CccHHHHHHHHHHCCCeEEEEEch
Confidence 0001123334567888875 88886655668888874 32 799999999999999999999999
Q ss_pred CCcceEEEEecC
Q 048621 441 GWGGCAVVLVKE 452 (456)
Q Consensus 441 G~GG~~i~L~~~ 452 (456)
| -++++|++.
T Consensus 265 G--PTv~al~~~ 274 (336)
T PTZ00299 265 G--PSVCALVGG 274 (336)
T ss_pred h--hhheEEecc
Confidence 8 899999873
No 32
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=5.2e-20 Score=180.42 Aligned_cols=169 Identities=13% Similarity=0.146 Sum_probs=121.7
Q ss_pred EEEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+..+||+||+| .|...|-|+. ..+-..|+++.++.+++. +. ..+++..... .+| .+ +
T Consensus 4 ~~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~---~~-~~~~i~~~~~-------~~p----~~--~- 65 (280)
T PRK14614 4 LTLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALS---DG-PGIRVTCGRE-------GVP----DG--P- 65 (280)
T ss_pred eEEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEEC---CC-CCEEEEeCCC-------CCC----CC--C-
Confidence 56789999998 4666665544 578889999999999886 32 3455532110 111 11 1
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.|.+. +.+..++...+. ..|+++.|.++||+++|||||||.++|++.+++++++.+++++++.++|..++
T Consensus 66 --~nl~~---~a~~~~~~~~~~----~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G- 135 (280)
T PRK14614 66 --GNIAW---RAADALLDLSGR----EVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG- 135 (280)
T ss_pred --CcHHH---HHHHHHHHHhCC----CCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 14443 333344444453 35899999999999999999999999999999999999999999999997654
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
.|...+++|| ..+.......+++++.++++.+++++|+...+
T Consensus 136 --------~Dv~~~l~gg---~~~~~g~ge~~~~l~~~~~~~ivl~~p~~~~s 177 (280)
T PRK14614 136 --------ADVPFFIFKK---TALAEGIGDKLTAVEGVPPLWVVLVNPGLHVS 177 (280)
T ss_pred --------CCcceeeeCC---cEEEEEcCceeEECCCCCCcEEEEECCCCCCC
Confidence 4888888887 33444444456666655578899999988544
No 33
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1.4e-19 Score=178.17 Aligned_cols=173 Identities=12% Similarity=0.094 Sum_probs=125.0
Q ss_pred CCEEEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 47 PDVYARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 47 ~~~~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
+.+.++||+|||| .|-..|.|+. ..+-..|+++.++.+++. ++ ..+++...... .++
T Consensus 5 ~~~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~---~~-~~i~~~~~~~~------~ip-------- 66 (290)
T PRK14608 5 PSLTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPA---EA-LSLTVSGPFAA------GLG-------- 66 (290)
T ss_pred ceEEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEEC---CC-CcEEEeCCCcc------CCC--------
Confidence 3467889999999 4766675553 578889999999999876 43 44666432110 011
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
.++.|++. +.+..+.+..+.. ..|++|.+.++||+++|||||||.+||++.+++++++.++++++++++|.++
T Consensus 67 -~~~~Nlv~---ka~~~~~~~~g~~---~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~i 139 (290)
T PRK14608 67 -DGDDNLVL---RAARALRARVGPG---LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSL 139 (290)
T ss_pred -CCCCcHHH---HHHHHHHHHhCCC---CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 12346664 3332333333321 3689999999999999999999999999999999999999999999999987
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
| .|...+++|| ..+....+..+++++.++++.+++++|+.+.+
T Consensus 140 g---------~dv~~~l~gg---~~~~~g~g~~~~~l~~~~~~~~vv~~p~~~~s 182 (290)
T PRK14608 140 G---------ADVPVCLDSR---PLIMRGIGEELTPLPGLPSLPAVLVNPGVPVA 182 (290)
T ss_pred C---------CCcchhhcCC---eEEEEecCCEeEECCCCCCcEEEEECCCCCcC
Confidence 5 5888999998 33444444456666544578899999987543
No 34
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1.5e-19 Score=175.93 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=120.8
Q ss_pred EEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 50 YARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
+.+||+|||| .|-..|-|+. ..+-..|+++..+.+++. ++ ..+++...+. .++ ...
T Consensus 2 ~~~apaKiNL~L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~---~~-~~~~~~~~~~-------~~~--------~~~ 62 (269)
T PRK14609 2 ITFPNAKINLGLNVVEKRPDGYHNLETVFYPIPLTDALEITVR---SA-TKTSLTVSGI-------PIP--------GDP 62 (269)
T ss_pred CcCccccEEeeeccCCcCCCCcceeeEEEEECCCCcEEEEEEc---CC-CcEEEEeCCC-------CCC--------CCc
Confidence 4679999999 4777766654 578899999999999876 43 4455543211 111 123
Q ss_pred cchhhhhHHHHHHHHHHH-cCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 125 WGHYFICGYKGFYEYVKA-KGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~-~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
+.|++. +. +..+.+ .+ ..|++|.+.++||+++|||||||.++|++.+++++++.++++++++++|.+++
T Consensus 63 ~~Nlv~---~a-~~~~~~~~~-----~~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG- 132 (269)
T PRK14609 63 EDNLVV---KA-YNLLKKDFP-----LPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG- 132 (269)
T ss_pred cccHHH---HH-HHHHHHHcC-----CCCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 456764 22 333333 33 24899999999999999999999999999999999999999999999999774
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCC-CCcEEEEEecCCccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLP-AGGTFVIAHSLAESL 256 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p-~~~~~ll~~s~~~~~ 256 (456)
.|...+.+|| ..+.......+++++.+ +++.++++++++..+
T Consensus 133 --------aDvpffl~g~---~a~~~G~Ge~l~~l~~~~~~~~~vlv~P~~~~s 175 (269)
T PRK14609 133 --------ADCAFFIRNK---PVYATGIGDIFSPIDLSLSGYYIALVKPDIHVS 175 (269)
T ss_pred --------CCceEEccCC---CEEEEEeCCeeEECCCCCCCCEEEEECCCCCCC
Confidence 6887777776 33334344556666542 478899999987543
No 35
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=1.8e-18 Score=169.12 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=119.6
Q ss_pred EEEecceecc----cccccccCC-CeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 50 YARSPGRVNL----IGEHIDYEG-YSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d~~G-~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
..+||+|||| .|...|.|+ -..+..+|+++.++.+++. + .+++..... .++ .
T Consensus 3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~---~---~~~i~~~~~-------~~~---------~- 59 (275)
T PRK14611 3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEH---H---TLEVKTSSP-------QIK---------E- 59 (275)
T ss_pred eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEEC---C---cEEEEeCCC-------CCC---------C-
Confidence 5689999999 477777554 4688899999999999876 3 244432110 011 1
Q ss_pred cchhhhhHHHHHHHHHHH-cCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 125 WGHYFICGYKGFYEYVKA-KGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~-~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
+.|++..++ ..+++ .+. ..|++|.+.++||+++|||||||.+||++.|++++++.++++++++++|.++|
T Consensus 60 ~~n~v~~a~----~~~~~~~g~----~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~- 130 (275)
T PRK14611 60 EENIVYKAL----RLFERYTGI----DINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS- 130 (275)
T ss_pred cccHHHHHH----HHHHHHhCC----CCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC-
Confidence 346664333 33333 343 36899999999999999999999999999999999999999999999999987
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
.|...+++|| +.+.......+++++.+.+..+++++++++.+
T Consensus 131 --------~D~~~~~~Gg---~~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~s 172 (275)
T PRK14611 131 --------ADAPFFLKGG---FALGRGIGDKLEFLEKPISREITLVYPNIKSS 172 (275)
T ss_pred --------CCCCeeecCC---eEEEeccCceeEECCcCCCcEEEEEeCCCCCC
Confidence 3766677887 44455444445666554466899999988544
No 36
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=2.8e-18 Score=168.88 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=114.2
Q ss_pred EEEEecceeccc----ccccccCC-CeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L~----GEh~d~~G-~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.++||+||||+ |--.|.|+ -.++.++|+++.+|.+++. + .+++..... .++ .+
T Consensus 4 ~~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~---~---~~~i~~~~~-------~~p----~~---- 62 (287)
T PRK14616 4 ISVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPS---D---TISMSCTNL-------DLP----VD---- 62 (287)
T ss_pred eEEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEEC---C---CEEEEeCCC-------CCC----CC----
Confidence 567999999983 55555443 4688999999999999875 3 244432111 111 11
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
..|.+.. .+..+++..+. ..|++|.|.++||+++|||||||.+||++.++++++|.++++++++++|.++|
T Consensus 63 -~~nl~~~---a~~~~~~~~~~----~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig- 133 (287)
T PRK14616 63 -DSNLCIR---AAKALQEYAGV----SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG- 133 (287)
T ss_pred -ccHHHHH---HHHHHHHHhCC----CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 1244432 22233333343 46899999999999999999999999999999999999999999999999987
Q ss_pred hhCCCCCcchhhhhh-hccCCcEEEeecCCCceeeccCCCCcEEEEEecCCcc
Q 048621 204 YIGAQSGGMDQAISI-MAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAES 255 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~-~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~ 255 (456)
.|..+++ +|| +.+.......+++++.+..+.+++++++..-
T Consensus 134 --------~Dvp~~l~~gg---~~~~~g~g~~~~~~~~~~~~~~vvv~P~~~v 175 (287)
T PRK14616 134 --------ADVPYFLEMKG---LAYATGIGDELEDLQLTLPFHIVTVFPEEHI 175 (287)
T ss_pred --------CCcceEeccCC---cEEEEEcCceeEECCcCCCcEEEEECCCCCc
Confidence 4644433 355 3333333334555555445789999998753
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=8.9e-19 Score=171.45 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=114.1
Q ss_pred EEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.++||+||+| .|-..| |+.-.++..+|+++.+|.+++. + ..+++..... .++ .
T Consensus 3 ~~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~---~--~~~~i~~~~~-------~~p----~----- 61 (276)
T PRK14612 3 MERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPI---A--SGLELRVLGA-------DLP----T----- 61 (276)
T ss_pred eEEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEEC---C--CcEEEEcCCC-------CCC----C-----
Confidence 45789999998 466666 3445799999999999999886 3 2344432110 121 1
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
+..|.+. +.+..+++..+. ..|++|.+.++||+++|||||||.+||++.+++++++.+++ +.++|..++
T Consensus 62 ~~~Nli~---ka~~~~~~~~g~----~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g- 130 (276)
T PRK14612 62 DERNLVY---RAARAYLDAAGQ----PGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG- 130 (276)
T ss_pred CCcccHH---HHHHHHHHHhCC----CCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC-
Confidence 1124443 444444555554 35899999999999999999999999999999999998765 445554443
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCcc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAES 255 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~ 255 (456)
.|...+.+|| +.+....+..+++++.| ++.+++++++++.
T Consensus 131 --------~dv~~~~~GG---~~~~~g~g~~~~~l~~~-~~~~vv~~P~~~~ 170 (276)
T PRK14612 131 --------ADVPFFLLGG---AAEARGVGERLTPLELP-PVPLVLVNPGVAV 170 (276)
T ss_pred --------CCcCeeeeCC---eEEEEecCccceEcCCC-CcEEEEECCCCCC
Confidence 4888889998 34444344456666654 7889999998754
No 38
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=3.3e-18 Score=168.80 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=120.0
Q ss_pred CEEEEecceecc----cccccccCC-Ceeeeeecc-cceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 48 DVYARSPGRVNL----IGEHIDYEG-YSVLPMAIR-QDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 48 ~~~~~APgri~L----~GEh~d~~G-~~~l~~AI~-~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
.+.++||+|||| .|-..|.|+ -..+..+|+ .+.++.+++. ++ ..+++..... .++ .
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~---~~-~~i~~~~~~~-------~~~------~- 67 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVT---DA-PGITVTCTIP-------DLD------P- 67 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEEC---CC-CCEEEEECCC-------CCC------C-
Confidence 467899999999 587777554 479999999 5999999987 43 4466643211 011 1
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
. .|.+. +.+..+....+. ..|++|.+.++||+++|||||||.++|++.+++++++.+++.++++++|.++
T Consensus 68 ~---~Nlv~---~a~~~~~~~~~~----~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~ 137 (296)
T PRK14615 68 E---RNTVT---RAYTAFAAATGF----RPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGV 137 (296)
T ss_pred C---ccHHH---HHHHHHHHHhCC----CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 1 24443 223222333343 3689999999999999999999999999999999999999999999999988
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccC-CCCcEEEEEecCCcccc
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQL-PAGGTFVIAHSLAESLK 257 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~-p~~~~~ll~~s~~~~~~ 257 (456)
| .|...+.+||. .+.......++++++ ++++.+++++|+++-+|
T Consensus 138 g---------aDvPffl~gg~---a~~~G~Ge~~~~l~~~~~~~~~vl~~P~~~vsT 182 (296)
T PRK14615 138 G---------ADVPFFLHNVP---CRATGIGEILTPVALGLSGWTLVLVCPEVQVST 182 (296)
T ss_pred C---------CCCeeeccCCC---EEEEeeEeEEEECCCCCCCcEEEEECCCCCcCh
Confidence 7 36555555652 233333344566654 34678999999885443
No 39
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=9.5e-17 Score=158.44 Aligned_cols=262 Identities=16% Similarity=0.074 Sum_probs=160.9
Q ss_pred Eecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCC--CCceeee-CCCCccccccCC
Q 048621 52 RSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDK--YSLCTYP-AEPDQELDLKHH 123 (456)
Q Consensus 52 ~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~--~~~~~~~-l~~~~~~~~~~~ 123 (456)
+||+|||| .|...|.|+. ..+-..|+++.++.+++. .+ ..+.+.+.+.. .+...+. ++. .. .
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~---~ 71 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPA---PN-GVFELFSTNEIILEKRKLYDQVSE---RG---D 71 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEEC---CC-CcEEEEecccccccccccccccCC---CC---C
Confidence 58999999 5877775554 688899999999999876 43 44666532210 0000000 100 00 0
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.-.|.+. +.+..+.+..+. ..|++|+|.++||+++|||||||.+++++.+++..+++ ...+++.++|.+++
T Consensus 72 ~~~Nlv~---ka~~~~~~~~~~----~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lG- 142 (297)
T PRK14613 72 IKQNILY---KTFIKARSLFPE----LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIG- 142 (297)
T ss_pred cccchHH---HHHHHHHHHhCC----CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhC-
Confidence 1135664 333333333443 36899999999999999999999998888888775554 23467777998885
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHh
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKL 283 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~ 283 (456)
.|..+++.|+ ..+.+..+...+++++|..+ ++++.++++-+|.. +.+.+.+.
T Consensus 143 --------aDvP~~l~G~---~a~~~g~Ge~~~~l~~~~~~-~vlv~P~~~vsT~~---------------a~~~l~~~- 194 (297)
T PRK14613 143 --------SDVPFFLGEG---HAFVTGKGEIMEEIEVHKGQ-GILALTPQVMNTGE---------------MYALLKKP- 194 (297)
T ss_pred --------CccchhhcCC---eEEEecCCcEEEEcCCCCCe-EEEEECCCCcChHH---------------HHHhcchh-
Confidence 4866555554 44555555567777766554 46777877433211 10100000
Q ss_pred CCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhH
Q 048621 284 GMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYK 363 (456)
Q Consensus 284 ~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (456)
+... . . ..
T Consensus 195 ----------------------------------------~~~~-~--~----------~~------------------- 202 (297)
T PRK14613 195 ----------------------------------------LQES-A--S----------QK------------------- 202 (297)
T ss_pred ----------------------------------------hccc-c--c----------cc-------------------
Confidence 0000 0 0 00
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHH-HHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCC
Q 048621 364 LHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGD-LMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGW 442 (456)
Q Consensus 364 ~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~-Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~ 442 (456)
.. +.+...++.++.++| ++.+.. ++|..+.....+ .|+++++.+.+++.|++|++|||+
T Consensus 203 ~~---------~~~~~~~~~al~~~~-----~~~l~~~l~ndle~~~~~l----~P~~~~i~~~~~~~Ga~~~~mSGS-- 262 (297)
T PRK14613 203 NG---------NTLSEDLISSLKVGD-----WVSLQGRLENDFEPVAFQL----HPELGVLKDKFLEFGSSYCSLTGS-- 262 (297)
T ss_pred cc---------cccHHHHHHHHHcCC-----HHHHHHHhcccchHHHHHh----CcHHHHHHHHHHHcCCCEEEEEcc--
Confidence 00 011223456676664 777644 457764444444 799999999999999999999999
Q ss_pred cceEEEEecC
Q 048621 443 GGCAVVLVKE 452 (456)
Q Consensus 443 GG~~i~L~~~ 452 (456)
|+|+++|+++
T Consensus 263 Gptvf~l~~~ 272 (297)
T PRK14613 263 GSSMYGLVQG 272 (297)
T ss_pred ccceEEEeCC
Confidence 4999999975
No 40
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=5.1e-17 Score=158.28 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=117.5
Q ss_pred EEEEecceecccccccccCCC--------eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccc
Q 048621 49 VYARSPGRVNLIGEHIDYEGY--------SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDL 120 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~--------~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~ 120 (456)
+.++||+||||++ | +.|. ..+..+|++++++.+++. ++ ..+++.+... . +
T Consensus 7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~---~~-~~~~i~~~~~-------~------~-- 64 (271)
T PRK00343 7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDTLHFEVR---DD-GEIRLLTPIP-------G------V-- 64 (271)
T ss_pred EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceEEEEEEC---CC-CcEEEeCCCC-------C------C--
Confidence 5678999999988 4 3332 369999999999999987 43 4466643210 0 1
Q ss_pred cCCCcchhhhhHHHHHHHHHHH-cCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048621 121 KHHQWGHYFICGYKGFYEYVKA-KGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTC 199 (456)
Q Consensus 121 ~~~~w~~~~~~~i~~v~~~l~~-~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~ 199 (456)
..|.|++.. ++..+.+ .+. ..|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.
T Consensus 65 --~~~~N~v~~----a~~~l~~~~~~----~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~ 134 (271)
T PRK00343 65 --PEEDNLIVR----AARLLQKATGT----PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGL 134 (271)
T ss_pred --CCcccHHHH----HHHHHHHHhCC----CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 235688753 3333433 343 35999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 200 ECERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 200 ~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
++| .|..++..|+ ..+....+...++++.| +..+++++|+.+.+
T Consensus 135 ~ig---------aDvp~~l~g~---~~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~s 178 (271)
T PRK00343 135 KLG---------ADVPVFVRGH---AAFAEGIGEILTPVDLP-EKWYLVVKPGVHIS 178 (271)
T ss_pred HhC---------CCceEEecCC---cEEEEecCCEEEECCCC-CcEEEEEeCCCCcC
Confidence 876 5655555554 33444444456666654 46678999987543
No 41
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.70 E-value=1.1e-14 Score=145.43 Aligned_cols=167 Identities=14% Similarity=0.213 Sum_probs=114.4
Q ss_pred EEEecceecc-----cccccccCCCeeeeeeccc-ceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 50 YARSPGRVNL-----IGEHIDYEGYSVLPMAIRQ-DTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 50 ~~~APgri~L-----~GEh~d~~G~~~l~~AI~~-~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
.+++|+|+.+ -|.|-=.+|+ +++||+. +++|.+++. ++ ..+.+.+.... .++ .+
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg--~G~al~~~~~~v~v~~~---~~-~~v~~~~~~g~------~l~----~~---- 61 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGG--VGLALEEPEIVIGLKES---DD-MGVEFTSHAEG------KLG----EE---- 61 (324)
T ss_pred eecccccccccccCCCCccCccccc--eEEEEeCCcEEEEEEEC---CC-ceEEecccccc------ccc----ch----
Confidence 5889999976 3443334554 5567764 788889887 43 55655432210 111 11
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.-.|.+. +.+...++..+. .|++|.|.++||.++|||||||+++|.+.|++.+++.++++++++++|.+.|
T Consensus 62 ~~~n~~~---~~~~~~~~~~g~-----~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge- 132 (324)
T TIGR00144 62 YRRSRIM---EAARKTLKHIGS-----EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG- 132 (324)
T ss_pred hHHHHHH---HHHHHHHHHhCC-----CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC-
Confidence 1123333 233333443342 5899999999999999999999999999999999999999999999998655
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEee---cC---------------CCceeeccCCCCcEEEEEecCCc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELID---FN---------------PIRATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~---~~---------------~~~~~~~~~p~~~~~ll~~s~~~ 254 (456)
.++.|.+++.+|| ++... +. +..+.++++| +|+++++.+..+
T Consensus 133 -----~s~~~va~~~~GG---~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~ 192 (324)
T TIGR00144 133 -----TSGIGVASFEDGG---FIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID 192 (324)
T ss_pred -----CCccceeeeeeCC---EEEECCcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC
Confidence 5677888999999 33331 11 1124566677 899999998764
No 42
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.65 E-value=4.1e-14 Score=138.82 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=116.8
Q ss_pred EEEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.+.||+|||| .|-..|.|+- ..+-++++++.++.+++. ++...+++.... .++ .
T Consensus 4 ~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~---~~~~~~~~~~~~--------~~~-------~-- 63 (283)
T PRK14610 4 FLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIG---SKNRGVEFVNSL--------KIN-------R-- 63 (283)
T ss_pred eEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEEC---CCCCeEEEeCCC--------CCC-------C--
Confidence 67899999999 4777775543 578899999999999986 321245554210 111 0
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
. .|++. +.+...++..+. ..|++|.+.++||+++|||||||.++|++.+++++++ ++.+++.++|.++
T Consensus 64 ~-~Nlv~---kA~~~l~~~~~~----~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l-- 131 (283)
T PRK14610 64 Y-NNTVQ---RAIGLLLRHSPV----RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV-- 131 (283)
T ss_pred C-CcHHH---HHHHHHHHHhCC----CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh--
Confidence 1 25554 333333333443 3599999999999999999999999999999999996 7999999999874
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccC-CCCcEEEEEec-CC
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQL-PAGGTFVIAHS-LA 253 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~-p~~~~~ll~~s-~~ 253 (456)
|.|...+++|| ..+.......+++++. +.+..++++.+ ++
T Consensus 132 -------GaDvPffl~g~---~a~~~G~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 132 -------GSDVPACLDSK---TLFVRGIGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred -------CCCCcEEEECC---eEEEEecccEEEECcccCCCCeEEEEECCCC
Confidence 59999999987 3466666667777743 22345778776 44
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.63 E-value=3.8e-14 Score=138.07 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=119.1
Q ss_pred EEEecceecc----cccccccCC-CeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCC
Q 048621 50 YARSPGRVNL----IGEHIDYEG-YSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d~~G-~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (456)
.++||+|||| .|...|.|+ -..+-..|+++.++.+++. .. ..+++.+.. .++ ..
T Consensus 2 ~~~apAKINL~L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~---~~-~~i~i~~~~--------~~~-------~~-- 60 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIAFGDQLSLSIS---SR-DSLQVINAC--------HLE-------TP-- 60 (288)
T ss_pred CccccceEEeeeccCCcCCCCCcceeEEEEEcCCCCEEEEEEC---CC-CcEEEeCCC--------CCC-------cc--
Confidence 3579999999 588887555 4688899999999999876 33 445554210 011 11
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 048621 125 WGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERY 204 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~ 204 (456)
.|.+. +.+....+..+. ..|++|.+.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 61 -~Nlv~---ra~~~l~~~~g~----~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG-- 130 (288)
T PRK00650 61 -SNSIW---KSVALFRRYTGI----TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG-- 130 (288)
T ss_pred -ccHHH---HHHHHHHHHhCC----CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 25554 333333333453 35899999999999999999999999999999999999999999999999998
Q ss_pred hCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCc
Q 048621 205 IGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 205 ~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~ 254 (456)
.|...++.|| ..+.......+++++.+++..++++.+++.
T Consensus 131 -------aDvPffl~~g---~a~~~G~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 131 -------MDTPFFFSTG---SALGVGRGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred -------CcchhhhcCc---eEEEEecCCEEEECcCCCCceEEEEeCCCC
Confidence 4777777666 334444445567776555677888888763
No 44
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.63 E-value=3.5e-16 Score=112.19 Aligned_cols=52 Identities=54% Similarity=0.855 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEec
Q 048621 36 KSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKH 87 (456)
Q Consensus 36 ~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~ 87 (456)
++.|++.||.+|++.++||||++|+|||+||+||.+|++||++++++.++++
T Consensus 1 ~~~F~~~fg~~p~~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 1 KEEFEEFFGEEPEVVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp -HHHHHHHSS--SEEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred ChhHHHHhCCCCCEEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 4689999999999999999999999999999999999999999999999875
No 45
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.9e-13 Score=136.91 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=136.0
Q ss_pred CCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHhhhhCCCCCcchhhhhhhccCCcE
Q 048621 150 PVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIA----QLTCECERYIGAQSGGMDQAISIMAKSGFA 225 (456)
Q Consensus 150 ~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~----~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~ 225 (456)
-.||++..+|++|.|+|||.|+-++...+.|+....|.....+.++ ......|+++-+.+|++||...++-|.
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GI--- 765 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGI--- 765 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhh---
Confidence 4799999999999999999999999999999999888766555544 445568998888899999999888773
Q ss_pred EEeecC-----CCceeeccCCC------CcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhccc
Q 048621 226 ELIDFN-----PIRATDVQLPA------GGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKV 294 (456)
Q Consensus 226 ~~i~~~-----~~~~~~~~~p~------~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~ 294 (456)
..-.+. ....+++.+|. +-+++++|||.. |.|.++|+.
T Consensus 766 K~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT------------------RLAkNLLQd------------- 814 (948)
T KOG4644|consen 766 KKGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT------------------RLAKNLLQD------------- 814 (948)
T ss_pred hhccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch------------------HHHHHHHHH-------------
Confidence 221221 24567777774 557888888731 222222211
Q ss_pred ccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHH
Q 048621 295 KTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSE 374 (456)
Q Consensus 295 ~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E 374 (456)
+. ++.+. ++|. ..+.+..+.
T Consensus 815 -----Vi-------------------Rn~fa--------------------------r~~a--------~~Q~ah~l~-- 834 (948)
T KOG4644|consen 815 -----VI-------------------RNFFA--------------------------RCKA--------TKQKAHKLA-- 834 (948)
T ss_pred -----HH-------------------HHHHH--------------------------hhHH--------HHHHHHHHH--
Confidence 11 11100 0110 112222221
Q ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhh-cCCCcHHHHHHHHHHHh--CCCceeeecccCCcceEEEEec
Q 048621 375 AKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVL-YECSCPELEELVTVCRD--NGALGARLTGAGWGGCAVVLVK 451 (456)
Q Consensus 375 ~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l-~~vS~peld~lv~~a~~--~GalGaKltGaG~GG~~i~L~~ 451 (456)
..+.++.+-++++. ++.+|+++...|+..+-. -+|-.+.+.+|.+.... .| -.+-..||||||+++.+.+
T Consensus 835 -~~tdecAegf~kGs-----l~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~k 907 (948)
T KOG4644|consen 835 -EATDECAEGFEKGS-----LELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIK 907 (948)
T ss_pred -HHHHHHHHHHhcCc-----HHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEec
Confidence 13445566677764 999999999888876644 25788888999986533 23 2445889999999999986
Q ss_pred CC
Q 048621 452 ES 453 (456)
Q Consensus 452 ~~ 453 (456)
+.
T Consensus 908 Ep 909 (948)
T KOG4644|consen 908 EP 909 (948)
T ss_pred CC
Confidence 54
No 46
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.59 E-value=1.2e-13 Score=133.11 Aligned_cols=167 Identities=17% Similarity=0.250 Sum_probs=125.7
Q ss_pred EEEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEec-CCCCCceeeeCCCCccccccC
Q 048621 49 VYARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANV-SDKYSLCTYPAEPDQELDLKH 122 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~-~~~~~~~~~~l~~~~~~~~~~ 122 (456)
....||+|||| .|-..|.|+- ..+-..|+.+..+.++++ ++ ..+.+... ... ++ .
T Consensus 4 ~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~---~~-~~~~~~~~~~~~-------lp--------~ 64 (289)
T COG1947 4 TKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPR---DD-DGFIVLGTFADG-------LP--------T 64 (289)
T ss_pred eEeeccceEEEEEEecccCCCCceeeEEEEEEeccCCEEEEEEC---CC-CCceEecCCCCC-------CC--------C
Confidence 56899999999 6888886654 588899999999999998 53 44444321 111 11 1
Q ss_pred CCcchhhhhHHHHHHHHHHH-cCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 123 HQWGHYFICGYKGFYEYVKA-KGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 123 ~~w~~~~~~~i~~v~~~l~~-~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
+. |.+. +.+ ..|++ .+. ..|++|.+++.||+++|||+-||-++|++.+|+++++..++.++|++++.++
T Consensus 65 ~~--NLv~---rAa-~ll~~~~~~----~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L 134 (289)
T COG1947 65 DE--NLVY---RAA-ELLRKRTGI----AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL 134 (289)
T ss_pred cc--hHHH---HHH-HHHHHHhCC----CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 11 4443 333 33333 342 5789999999999999999999999999999999999999999999999887
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
- .|...+++|| ..+......++++++-++...++++.+++.-+
T Consensus 135 G---------aDVPffl~g~---tA~a~G~GE~l~~~~~~~~~~~vl~~P~v~vs 177 (289)
T COG1947 135 G---------ADVPFFLSGG---TAFAEGRGEKLEPLEDPPEKWYVLAKPGVGVS 177 (289)
T ss_pred C---------CCcCeeeeCC---ceEEEEccceeeECCCCCCceEEEEeCCCCCC
Confidence 4 8888888887 34566666778888744578889999877543
No 47
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.57 E-value=7.5e-15 Score=112.26 Aligned_cols=67 Identities=43% Similarity=0.660 Sum_probs=62.9
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhcc
Q 048621 154 DILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAK 221 (456)
Q Consensus 154 ~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg 221 (456)
+|+++|+||+++|||||||+++|++.+++++++.++++++++++++.+|+.+ +.++++|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~-g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYI-GKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHC-SSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHc-CCCChhhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999866 666889999999997
No 48
>PRK05905 hypothetical protein; Provisional
Probab=99.50 E-value=2.5e-12 Score=123.68 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=115.9
Q ss_pred EEEecceecc----cccccc-cC-CCeeeeeec-ccceEEEEEecccCCCC-CeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 50 YARSPGRVNL----IGEHID-YE-GYSVLPMAI-RQDTIVAIRKHVSGETE-KVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d-~~-G~~~l~~AI-~~~~~v~v~~~~~~~~~-~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
.+.||+|||| .|...| .| .-..+-..| +++.++.+++. .+. ..+++..... .. . .
T Consensus 2 ~~~apAKINL~L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~---~~~~~~i~~~~~~~-------~~-----~--~ 64 (258)
T PRK05905 2 KYKSYAKINLGLSIYKKCKKVTKHKLESIFILVENVYDDIEIEKI---EKNIDDIHYFDETN-------EI-----L--V 64 (258)
T ss_pred cccccceEEeeeeecccCCCCCCcceeEEEEEccccccEEEEEEC---CCCCceEEEeCCCc-------CC-----C--C
Confidence 4679999999 577785 44 456888999 99999999876 321 2455532110 00 0 0
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
. .|.+. ++.+....+..+. ..|++|.+.+.||.++||||+||-++|++.+++++++ ++.+++.++|.++
T Consensus 65 --~-~nli~--~ka~~~l~~~~~~----~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l 133 (258)
T PRK05905 65 --Y-SRLIL--VKTLEWLRDKYNI----KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL 133 (258)
T ss_pred --C-cchHH--HHHHHHHHHHhCC----CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh
Confidence 0 23332 0222222233343 3589999999999999999999999999999999998 6899999998877
Q ss_pred hhhhCCCCCcchhhhhhhc-cCCcEEEeecCCCceeeccCCCCcEEEEEecCCc
Q 048621 202 ERYIGAQSGGMDQAISIMA-KSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~G-g~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~ 254 (456)
- .|...+++| | ..+.......+++++.|....++++++++.
T Consensus 134 G---------ADVPFfl~g~~---~a~~~G~GE~l~pl~~~~~~~~vlv~P~~~ 175 (258)
T PRK05905 134 G---------SDIPFFLSGYK---TAYISDYGSQVEDLIGQFKLTYKVIFMNVN 175 (258)
T ss_pred C---------CCcceEEeCCc---cEEEEeeCceeEECCCCCCceEEEECCCCC
Confidence 4 888888888 6 334555556677776554566899988774
No 49
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.46 E-value=2.9e-11 Score=113.37 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=106.9
Q ss_pred EEEecceecccccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchh
Q 048621 50 YARSPGRVNLIGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHY 128 (456)
Q Consensus 50 ~~~APgri~L~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~ 128 (456)
..+||||+-|+|+++.+.++ .+.+.|++++......+- ++.+.+.+...- + . .+ ++ + +
T Consensus 5 ~fSaPGk~LlaGdYs~lv~glsahaia~nkr~~cs~vrv---Kskdswlfhisi--~-----g------~~-kn-s---f 63 (337)
T COG3890 5 SFSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSFVRV---KSKDSWLFHISI--K-----G------ID-KN-S---F 63 (337)
T ss_pred eecCCCceEEeccceeeeecceeeEEEeccccccceeEe---ccCceEEEEeee--c-----c------cC-CC-h---H
Confidence 46899999999998887655 458889998865544222 111223322110 0 0 00 00 0 0
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCCceEEEEE------ec-CCC---CCCCCchHHHHHHHH-HHHHHH-hCCCCCH-HHHH
Q 048621 129 FICGYKGFYEYVKAKGLDVGPPVGLDILVD------GI-VPT---GSGLSSSAAFVCSST-IALMAA-FGVEVPK-KEIA 195 (456)
Q Consensus 129 ~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~------S~-IP~---g~GLGSSAA~~vA~~-~al~~l-~g~~ls~-~el~ 195 (456)
+--.+.-|+.+++..-.. -.+++++..+ ++ +|- ..|||||||+++.++ .+++.+ .+.+++. .++.
T Consensus 64 iEl~~~~Vf~yF~~~~~~--c~qnlev~~ddayy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIh 141 (337)
T COG3890 64 IELRSDFVFKYFAYLSQN--CFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIH 141 (337)
T ss_pred HHHHHHHHHHHHHhhhhh--ccccceeecchhhcccccceecCCccCCCcchhHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 000112233443322100 0233333311 11 222 689999999999988 344444 5666765 8899
Q ss_pred HHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCC------ceeeccCCCCcEEEEEecCCc
Q 048621 196 QLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPI------RATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 196 ~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~------~~~~~~~p~~~~~ll~~s~~~ 254 (456)
++|+.+.. -.|+.+|+.|.++++||+ ++|-+|.|. .+..+++. ++.+++.+.+..
T Consensus 142 klaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~qig~~nfg-~y~LmmGd~a~g 203 (337)
T COG3890 142 KLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLRQIGAVNFG-DYYLMMGDQAIG 203 (337)
T ss_pred HHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhHhhCccccc-CeeeeecccccC
Confidence 99999986 678889999999999998 888889873 23334444 678888887653
No 50
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.43 E-value=8.3e-11 Score=110.58 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=111.4
Q ss_pred EEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcchhh
Q 048621 50 YARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYF 129 (456)
Q Consensus 50 ~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~~~ 129 (456)
.++|||-+.++---++..| -+++||+.+.+.++.. ++ .++..... .++ +.
T Consensus 4 ~a~A~g~~TIiNAiatG~G---~AfgidL~v~a~v~~~---~~---~~~~~~~~--------------~d~------~l- 53 (278)
T COG1685 4 RARAYGGGTIINAIATGKG---SAFGIDLKVEAEVRLS---DE---GKVRGEPE--------------GDT------RL- 53 (278)
T ss_pred eEEecCceeEeeehhcCcc---ceeeecceEEEEEEEc---Cc---cccccCCC--------------CCh------HH-
Confidence 4566666665443333333 3578999999998876 21 11211000 010 11
Q ss_pred hhHHHHHHHHHHH-cCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCC
Q 048621 130 ICGYKGFYEYVKA-KGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQ 208 (456)
Q Consensus 130 ~~~i~~v~~~l~~-~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~ 208 (456)
+..+...+.+ .|. ..|+++.++|+||+++||.||||++.|++.|+..+.|.++++.+++++..++-.-.|..
T Consensus 54 ---i~~~~~~v~e~~g~----~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvS 126 (278)
T COG1685 54 ---IERCVERVREKYGI----PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVS 126 (278)
T ss_pred ---HHHHHHHHHHHcCC----CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCce
Confidence 2344444444 344 46999999999999999999999999999999999999999999999998887666644
Q ss_pred C-Ccc-hhhhhhhccCCcEEEeecCCCceeec-cCCCCcEEEEEecCC
Q 048621 209 S-GGM-DQAISIMAKSGFAELIDFNPIRATDV-QLPAGGTFVIAHSLA 253 (456)
Q Consensus 209 ~-g~~-D~~~s~~Gg~~~~~~i~~~~~~~~~~-~~p~~~~~ll~~s~~ 253 (456)
. |-. |..++++|| +.+.|.+.+++... ..| ++..+|.-++.
T Consensus 127 vTGA~DDa~AS~~GG---~~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 127 VTGAFDDACASYLGG---IVITDNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred EeccchHHHHHHhCC---eEEecchhheehhccccC-CceEEEEecCC
Confidence 3 445 566789998 66677666665544 455 67777776664
No 51
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.41 E-value=1.5e-10 Score=114.41 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcch
Q 048621 134 KGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMD 213 (456)
Q Consensus 134 ~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D 213 (456)
..++..+++... ...+++|.+.++||.++|||||||..+|++.|++++++++++++++.++|.++| |.
T Consensus 70 ~~~l~~~~~~~~---~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gs------ 137 (305)
T TIGR01240 70 SNCLDDFRQLRK---EQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GS------ 137 (305)
T ss_pred HHHHHHHHHhcC---CCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CC------
Confidence 455566655432 246899999999999999999999999999999999999999999999999887 11
Q ss_pred hhhhhhccCCcEEEee---cCCCceeeccCCCCc----EEEEEecCC
Q 048621 214 QAISIMAKSGFAELID---FNPIRATDVQLPAGG----TFVIAHSLA 253 (456)
Q Consensus 214 ~~~s~~Gg~~~~~~i~---~~~~~~~~~~~p~~~----~~ll~~s~~ 253 (456)
...+++||. +.+.. ..+....+++.+..+ .++++.+..
T Consensus 138 a~~s~~GG~--v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~ 182 (305)
T TIGR01240 138 ACRSLFGGY--VAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDI 182 (305)
T ss_pred eeeeeecCe--EEEEcCCCCCCeeEEECCCccccccceEEEEEcCCC
Confidence 222789983 33322 123445666554333 344444443
No 52
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=99.34 E-value=1.3e-10 Score=111.33 Aligned_cols=354 Identities=17% Similarity=0.194 Sum_probs=183.7
Q ss_pred EEEEecceecccccccccC-CCeeeeeecccceEEEEEecccC--CCCCeEEEEecCCCCCceee--eCCCC-cc-----
Q 048621 49 VYARSPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHVSG--ETEKVLKIANVSDKYSLCTY--PAEPD-QE----- 117 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~-G~~~l~~AI~~~~~v~v~~~~~~--~~~~~i~i~s~~~~~~~~~~--~l~~~-~~----- 117 (456)
+..+||||+-+.|++.|.. .+..+...++-+.+..+.+.+.. .+-..+++.|. +|...+| .+++. ..
T Consensus 3 v~~SAPGKvL~aGGYlVLd~~y~glV~gl~Ar~yAi~~p~~~~~g~~~~~VrvkSp--Qf~d~EwlY~is~~~~~i~v~~ 80 (459)
T KOG4519|consen 3 VVASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGPEWTDVRVKSP--QFSDREWLYKISLNHLTIQVVS 80 (459)
T ss_pred ceecCCCceEEecceEEecCCcceeEEeeeceeEEEeeccccccCCccceeEecCc--ccccchheeecccccceeEEEe
Confidence 4589999999999999986 35567778888888888876221 11123666654 4543332 22211 00
Q ss_pred ccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEE-Ee-------------------------cCC--CCCCCCc
Q 048621 118 LDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILV-DG-------------------------IVP--TGSGLSS 169 (456)
Q Consensus 118 ~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i-~S-------------------------~IP--~g~GLGS 169 (456)
+.....+ ++--+|..++.++.-.+.+.--.+|+++++ .| .+| +..||||
T Consensus 81 ~~~s~NP---Fve~ai~yvi~yf~~~~~~~lc~q~L~Vt~l~sddaY~~qp~s~~~~~~~~~~~F~~~~~~eV~KTGLGS 157 (459)
T KOG4519|consen 81 ASDSRNP---FVEHAIQYVIAYFHLATLHKLCLQGLDVTILGSDDAYSYQPESLGTLAPFASITFNAAEKPEVAKTGLGS 157 (459)
T ss_pred cCCCCCc---HHHHHHHHHHHHhhhccchhHHhcCceEEEeecccccccCcccccccCCCCceeeeccccccccccCccc
Confidence 1111122 343455666666543322100123444441 12 233 3689999
Q ss_pred hHHHHHHHHHHHHHHhCC----------CCC---HHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCce
Q 048621 170 SAAFVCSSTIALMAAFGV----------EVP---KKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRA 235 (456)
Q Consensus 170 SAA~~vA~~~al~~l~g~----------~ls---~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~ 235 (456)
|||++.+++.+++..+|. +++ ++-+-++|+-+.- ..|.-+|+.|..+++||- +.|.+|.|.-+
T Consensus 158 SAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrRF~P~li 234 (459)
T KOG4519|consen 158 SAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELI 234 (459)
T ss_pred hHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeeeCCHHHH
Confidence 999999999887777643 122 3446677877764 567778999999999986 77899988433
Q ss_pred eeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhh-cCCCCCC
Q 048621 236 TDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAF-AGKNGSD 314 (456)
Q Consensus 236 ~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~-~g~~~~~ 314 (456)
..++ . .+-++.+.++ .+--.+..+|.....+ -+|...+.+|.+. .|.+.+-
T Consensus 235 s~lp--~-----~i~~~~~~~e----------------l~~~V~k~~W~~~~~~-----f~LP~~~~L~mGd~~gGSsTp 286 (459)
T KOG4519|consen 235 SFLP--Q-----VIVTGLPLNE----------------LIGTVLKGKWDNKRTE-----FSLPPLMNLFMGDGSGGSSTP 286 (459)
T ss_pred HHHH--H-----HHhccChhHH----------------HHHHhhhhhccccccc-----ccCCceeeeeeecCCCCCCcH
Confidence 3322 1 1111111110 1111223333321110 1344334444332 4556677
Q ss_pred chhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhh--hhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCCh
Q 048621 315 DPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLN--AAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDE 392 (456)
Q Consensus 315 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~ 392 (456)
.||..|++.-..++. ++. +...+ .++...++++.+..|+ .+.+.+.+.|+.. +.-++..-+++..
T Consensus 287 ~mV~kVk~Wq~s~~p--e~~-k~~~~-lddansr~~~~l~kl~~l~~~h~d~~~~v~e----Sl~~~~~~~~~~~----- 353 (459)
T KOG4519|consen 287 SMVGKVKKWQMSDPP--EAR-KNWQN-LDDANSRLETKLNKLSKLAKDHWDVYLRVIE----SLSVLTINEAIIK----- 353 (459)
T ss_pred HHHHHHHHHhhcCCh--hHh-hhhcc-hhhHHHHHHhhhhhhhHhhhhchhHHHHHHh----hcccccchhhhhh-----
Confidence 899999998665522 111 11110 0111111112111111 1122223333221 1111111111111
Q ss_pred HHHHHHHHHHHHhHHhhhhhc-----CCCcHHHHHHHHHHHh-CCCceeeecccCCcceEEEEecC
Q 048621 393 DKLRRLGDLMNDSHHSCSVLY-----ECSCPELEELVTVCRD-NGALGARLTGAGWGGCAVVLVKE 452 (456)
Q Consensus 393 ~~~~~lG~Lm~~sh~~lr~l~-----~vS~peld~lv~~a~~-~GalGaKltGaG~GG~~i~L~~~ 452 (456)
.+.++-+.|..-..++|... .|-.|.--.|.+-++. .|++++-+-||||=+.+.++...
T Consensus 354 -e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~ 418 (459)
T KOG4519|consen 354 -ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLG 418 (459)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeec
Confidence 13333344444444444432 2556667788887777 59999999999998888887643
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.33 E-value=3.5e-11 Score=116.14 Aligned_cols=167 Identities=12% Similarity=0.096 Sum_probs=116.7
Q ss_pred EEEecceecc----cccccccCCC-eeeeeec-ccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 50 YARSPGRVNL----IGEHIDYEGY-SVLPMAI-RQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 50 ~~~APgri~L----~GEh~d~~G~-~~l~~AI-~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.+||+|||| .|.. |.|+- ..+-..| ++|.++.+++. .+ ..+++... . ..+ .+
T Consensus 2 ~~~apaKINL~L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~---~~-~~~~i~~~---~-----~~p-------~~- 60 (257)
T PRK04181 2 VMKAYAKVNIFLKILGKR-GNYHELISRFVLVKDLFDEIEFVPK---SA-ESFELIGN---F-----DCP-------LE- 60 (257)
T ss_pred CccccceEEEEEeeCcCC-CCCceeheeeeEccCcCcEEEEEEC---CC-CCEEEEcC---C-----CCC-------CC-
Confidence 4579999999 5777 75543 5788899 99999999875 33 44666421 0 111 11
Q ss_pred CcchhhhhHHHHHHHHHHH--cCCCC-CCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048621 124 QWGHYFICGYKGFYEYVKA--KGLDV-GPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCE 200 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~--~g~~~-~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~ 200 (456)
.|.+. +.+ ..+.+ .+... ....|++|.+.++||+++|||||||.++|++.+++++++.+++++++.++|.+
T Consensus 61 --~NLv~---kA~-~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~ 134 (257)
T PRK04181 61 --ENIIY---KAY-QELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSK 134 (257)
T ss_pred --CcHHH---HHH-HHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 24553 222 23332 22100 01258999999999999999999999999999999999999999999999987
Q ss_pred HhhhhCCCCCcchhhhhhhc-cCCcEEEeecCCCceeeccCCCCcEEEEEecCCccc
Q 048621 201 CERYIGAQSGGMDQAISIMA-KSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESL 256 (456)
Q Consensus 201 ~E~~~~~~~g~~D~~~s~~G-g~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~ 256 (456)
+- .|...+++| + ..+.......+++++.+.. .++++++++.-+
T Consensus 135 lG---------aDvPffl~~~~---~a~~~G~Ge~l~~l~~~~~-~~~lv~P~~~vs 178 (257)
T PRK04181 135 VG---------ADVAFFISGYK---SANVSGIGEIVEEFEEEIL-NLEIFTPNIFCS 178 (257)
T ss_pred hC---------CCccEEecCCc---eEEEEeeCCeeEECCCCCC-eEEEECCCCCcC
Confidence 74 888888888 5 3345555556777753322 488998887543
No 54
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.21 E-value=3.3e-11 Score=96.25 Aligned_cols=67 Identities=33% Similarity=0.541 Sum_probs=57.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhHHh-hhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecC
Q 048621 381 FKDTVYSNLSDEDKLRRLGDLMNDSHHS-CSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKE 452 (456)
Q Consensus 381 ~~~al~~~d~~~~~~~~lG~Lm~~sh~~-lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~ 452 (456)
+++||.++| ++.|+++|+.+|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+++
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~ 68 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKD 68 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESS
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECC
Confidence 457888886 99999999999985 21134678999999999999999999999999999999999943
No 55
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.11 E-value=3.6e-08 Score=93.87 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=132.1
Q ss_pred CCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEee
Q 048621 150 PVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELID 229 (456)
Q Consensus 150 ~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~ 229 (456)
..|++|.|.+++|.-.||||-..++.|+..++++++|++++..+|+...-. +..|++-.++.-+||. .+|
T Consensus 69 ~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR------G~tSgiGv~afe~GGF----IVD 138 (312)
T COG1907 69 GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR------GGTSGIGVYAFEYGGF----IVD 138 (312)
T ss_pred cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc------CCccceeEEEEEECCE----EEE
Confidence 468999999999999999999999999999999999999998888765422 3346677777778872 234
Q ss_pred c------CC--Cc--eeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccc
Q 048621 230 F------NP--IR--ATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSD 299 (456)
Q Consensus 230 ~------~~--~~--~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~ 299 (456)
. .| .. +-+..+|.+|.|+++-+..++. .+..| |.. ++++
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg-------~~~~~--E~~----if~~------------------ 187 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERG-------VSGRR--EVD----IFKK------------------ 187 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCcc-------ccchH--HHH----HHHh------------------
Confidence 2 12 12 5566788899999999876421 11111 111 1100
Q ss_pred hhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHH
Q 048621 300 VEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVY 379 (456)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~ 379 (456)
+. +...++ .+++.|++ ..
T Consensus 188 -----------------------~~---p~p~~~-------------------------------~~~ls~~v-----Lm 205 (312)
T COG1907 188 -----------------------YC---PVPLEE-------------------------------VGELSHRV-----LM 205 (312)
T ss_pred -----------------------cC---CCCHHH-------------------------------HHHHHHHH-----HH
Confidence 00 011111 11222211 12
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhHHhhh---hh--cCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCC
Q 048621 380 AFKDTVYSNLSDEDKLRRLGDLMNDSHHSCS---VL--YECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 380 ~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr---~l--~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
.+.-++-.+ |++.||+-|++-|.+.- +- ..+.|+.+..+++.+.+. ++||-+| -||-.+++++++..
T Consensus 206 ~mmPavvE~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~ 277 (312)
T COG1907 206 KMMPAVVER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSRE 277 (312)
T ss_pred HHhHHHHhh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEeccccc
Confidence 445555544 49999999999999882 22 247899999999999998 7888875 48899999997653
No 56
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=3.7e-08 Score=91.85 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=82.9
Q ss_pred CCEEEEecceeccccccc--ccC-CCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 47 PDVYARSPGRVNLIGEHI--DYE-GYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 47 ~~~~~~APgri~L~GEh~--d~~-G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+++.+.+|+.. ||-. ... +..-+.+.|+++..+++..+ .+...+ . ...
T Consensus 12 ~~~~A~cpAs~---GELlQG~~~g~~~Lvs~PIa~~s~v~~~~~---s~~~s~--------------~---------~t~ 62 (293)
T COG4542 12 MVISAKCPASC---GELLQGSFNGSEKLVSFPIALFSEVTLFDR---SGKDSV--------------N---------VTP 62 (293)
T ss_pred cceeeecccch---hhhheeeecCCceEEEcchhhhhheeeecc---CCCccc--------------c---------cch
Confidence 34677777764 3311 112 23467789999998888776 320100 0 001
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECE 202 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E 202 (456)
.| +.....|.+.+++.....|+++.+.|+||.|.||+||.|-.||++.|...++|.++++.+|+++|.++|
T Consensus 63 a~--------~~~e~~la~~~~~~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE 133 (293)
T COG4542 63 AH--------KFKENILARWGVTKLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133 (293)
T ss_pred hH--------HHHHHHHHHhCccceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC
Confidence 22 112223444444433357899999999999999999999999999999999999999999999999999
No 57
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.81 E-value=2.5e-06 Score=81.09 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=109.8
Q ss_pred EEEEecceecc-----cccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL-----IGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L-----~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
..+++|+-|+= .|..--..|..-.+.+++.++.+.++.. .. .++++.. ..++++
T Consensus 3 ~~~fvP~hITgfF~pv~~~~p~~SGSiGaGv~l~~gv~v~v~~~---~~-~~v~~Ng-------~~~d~~---------- 61 (283)
T COG1829 3 VRLFVPGHITGFFVPVIGKDPLKSGSIGAGVALERGVTVEVRFG---EG-TGVRLNG-------KKIDLP---------- 61 (283)
T ss_pred ceEeccceeEEEEEeccCCCCccCCCcceeEEecCceeEEEEec---CC-ceEEECC-------eeccch----------
Confidence 35677887763 2333334566778899999999999887 32 3343321 111111
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.+ ..+++.|. ..++.+.+.+++|+|+|+|-|+|.+.+.+.|++..++++ .+..++.|+.+|-
T Consensus 62 ---~~-----~~v~e~L~--------~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV 123 (283)
T COG1829 62 ---IT-----RKVIEKLG--------PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEV 123 (283)
T ss_pred ---hH-----HHHHHHhC--------ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHH
Confidence 11 33444442 345789999999999999999999999999999999865 8889999999985
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCC-----CceeeccCCCCcEEEEEecC
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNP-----IRATDVQLPAGGTFVIAHSL 252 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~-----~~~~~~~~p~~~~~ll~~s~ 252 (456)
..+ .|..|..+.++|| ++ ++.+| ..+..++.|. ++++.+.-+
T Consensus 124 ~~g--tGLGDVvAq~~GG---lV-iR~~pG~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 124 ENG--TGLGDVVAQYTGG---LV-IRVKPGGPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred HcC--CCchHHHHHhcCc---EE-EEecCCCCCeEEEEEeecCC-ceEEEEEcc
Confidence 433 4678999999998 33 44444 3667777774 777766654
No 58
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.67 E-value=2.2e-06 Score=85.09 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=53.2
Q ss_pred eEEEEEe--cCCCCCCCCchHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhhhCCCCCcchhhhhhhcc
Q 048621 153 LDILVDG--IVPTGSGLSSSAAFVCSSTIALMAAFGVEVP-KKEIAQLTCECERYIGAQSGGMDQAISIMAK 221 (456)
Q Consensus 153 ~~i~i~S--~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls-~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg 221 (456)
+++.|.| ++|.++|||||||..+|++.|+..+++++++ +.++..+|.. +||.|.- ++|||
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~--------GSGSa~r-S~~Gg 166 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ--------GSGSACR-SLYGG 166 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc--------cChHHHH-HhhCC
Confidence 3677777 9999999999999999999999999999999 9999999872 3778877 89998
No 59
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.54 E-value=4.5e-07 Score=84.91 Aligned_cols=277 Identities=19% Similarity=0.265 Sum_probs=158.1
Q ss_pred CCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccC-C---CCC---eEEEEecCCCCCceeeeCCCCccc
Q 048621 46 APDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSG-E---TEK---VLKIANVSDKYSLCTYPAEPDQEL 118 (456)
Q Consensus 46 ~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~-~---~~~---~i~i~s~~~~~~~~~~~l~~~~~~ 118 (456)
.|.+.++.|..-..+| .|++++++.+..+..+.+...... + +.+ ..++.+..++|... .+. .
T Consensus 2 ~~~f~IkvpassaNig-----Pg~dvlg~~l~~~~sldv~v~~~~~~~t~s~p~~c~ltya~eg~G~~~v--~l~----v 70 (355)
T KOG1537|consen 2 SPSFPIKVPASSANIG-----PGLDVLGSVLRCRASLDVLVAVEPEPVTVSVPTFCPLTYANEGPGFDFV--GLA----V 70 (355)
T ss_pred CCCcccccccccCCCC-----CCeeeeeeeeEEEEEEEEEEecccccccccCCCccceeeeccCCCccce--eee----e
Confidence 4667788888888888 788899998888765554332000 0 001 12233333333211 111 1
Q ss_pred cccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 048621 119 DLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLT 198 (456)
Q Consensus 119 ~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la 198 (456)
| .+ .+. ..++..++..++. .++.+-++++..-||.|+|+|||++..+|.+...+...++.+++.....++
T Consensus 71 d-~n-----~iT---~t~lyvlRcnnis-~fp~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~ 140 (355)
T KOG1537|consen 71 D-GN-----HIT---LTVLYVLRCNNIS-IFPITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYS 140 (355)
T ss_pred c-cc-----eEE---EeeeeeEEeCcEe-ecccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHH
Confidence 1 00 110 0111123333322 134567888999999999999999999999999998888888887777666
Q ss_pred HHHhhh--------hCCCCC----------------cchhh-hhhhccCCcEEEeecCCCce-eeccCC--CCcEEEEEe
Q 048621 199 CECERY--------IGAQSG----------------GMDQA-ISIMAKSGFAELIDFNPIRA-TDVQLP--AGGTFVIAH 250 (456)
Q Consensus 199 ~~~E~~--------~~~~~g----------------~~D~~-~s~~Gg~~~~~~i~~~~~~~-~~~~~p--~~~~~ll~~ 250 (456)
..+|+. +|+.+| ..|.. -...||. .+.....|... +++.+| +++.++++-
T Consensus 141 lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~~~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~vi 218 (355)
T KOG1537|consen 141 LMIERHPDNAVAEMMGGFLGSFLRALLESEAKVSGYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVI 218 (355)
T ss_pred HHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhhcCCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEe
Confidence 655531 222221 13444 3566763 33333444333 344443 577888877
Q ss_pred cCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCC
Q 048621 251 SLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYM 330 (456)
Q Consensus 251 s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~ 330 (456)
+.....++. .|. .++.. |
T Consensus 219 P~Fel~T~k-------------------------------------~R~-----------------------vLPt~-y- 236 (355)
T KOG1537|consen 219 PDFELPTKK-------------------------------------MRA-----------------------VLPTE-Y- 236 (355)
T ss_pred ccccccchh-------------------------------------hhh-----------------------hcCcc-c-
Confidence 765432211 010 11110 0
Q ss_pred HHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcC-CCChHHHHHHHHHHH-HhHHh
Q 048621 331 AKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSN-LSDEDKLRRLGDLMN-DSHHS 408 (456)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~-d~~~~~~~~lG~Lm~-~sh~~ 408 (456)
-+..|++. .+|.-....|+..+ + +....-.+|. +-|+.
T Consensus 237 -----------------------------------p~~d~V~N-lqrlA~LttAl~~~p~----n~~L~y~~m~DkvhqP 276 (355)
T KOG1537|consen 237 -----------------------------------PMVDHVWN-LQRLAALTTALLEGPD----NVMLGYALMSDKVHQP 276 (355)
T ss_pred -----------------------------------cceeeeec-HHHHHHHHHHHhcCCC----chhhhhhhhhccccCc
Confidence 01111111 12333334555554 3 3455556665 78999
Q ss_pred hhhhcCCCcHHHHHHHHHHHhC---CCceeeecccCCcceEEEEecC
Q 048621 409 CSVLYECSCPELEELVTVCRDN---GALGARLTGAGWGGCAVVLVKE 452 (456)
Q Consensus 409 lr~l~~vS~peld~lv~~a~~~---GalGaKltGaG~GG~~i~L~~~ 452 (456)
.|+-. -|-++.+...+... |.+|..++||| -.+++|..+
T Consensus 277 yRa~L---IPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAlate 318 (355)
T KOG1537|consen 277 YRAPL---IPGLEAILKAALPATYPGLFGICLSGAG--PTALALATE 318 (355)
T ss_pred ccccc---CccHHHHHHhhCcccCCceeeEEecCCC--CeeEEEecC
Confidence 99875 78899999888764 99999999998 888888763
No 60
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.48 E-value=8.2e-05 Score=73.40 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 134 KGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 134 ~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
+.+++.+++... ..-.+.|...++.|.++||+||||..+|++.|++++++++++..++-++|..+
T Consensus 75 ~~~ld~~R~~~~---~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g 139 (329)
T COG3407 75 RRVLDRFRKEYG---ISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG 139 (329)
T ss_pred HHHHHHHHHhhc---ccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh
Confidence 567788875321 14578888889999999999999999999999999999999999999998755
No 61
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.45 E-value=0.00011 Score=70.82 Aligned_cols=131 Identities=19% Similarity=0.288 Sum_probs=79.0
Q ss_pred EEEEecceecccccccccCCC--eeeeeecccceEEEEEecccCCCCCeEEEEe--cCCCCCceeeeCCC-CccccccCC
Q 048621 49 VYARSPGRVNLIGEHIDYEGY--SVLPMAIRQDTIVAIRKHVSGETEKVLKIAN--VSDKYSLCTYPAEP-DQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~--~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s--~~~~~~~~~~~l~~-~~~~~~~~~ 123 (456)
+.+.+|--|.++= |+|. ..+.+.+|..+.|+++.. .-..+.+ ..+.|....+-|+. ..++. +.
T Consensus 8 ~t~taPvNIAvIK----YWGKRD~~l~LP~N~SISvTL~~D------~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~--~~ 75 (395)
T KOG2833|consen 8 VTATAPVNIAVIK----YWGKRDEELNLPTNDSISVTLSQD------DLCTLTTAVVSPSFEEDRMWLNGKEVPIS--NK 75 (395)
T ss_pred EEeeccceeeeee----eccccchhhcCCcCCceeEEeccc------cceeeeeEeeccccccceeEECCceeccc--cH
Confidence 5777888777753 5565 377888888888887653 1111111 12234322222211 01111 11
Q ss_pred CcchhhhhHHHHHHHHHHHc---------CCCCCCCCceEEEE--EecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHH
Q 048621 124 QWGHYFICGYKGFYEYVKAK---------GLDVGPPVGLDILV--DGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKK 192 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~---------g~~~~~~~g~~i~i--~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~ 192 (456)
+| +.+++.++.. .++ +...++++| .++.|..+||.||||=-+|++.||.++++++.+++
T Consensus 76 ---R~-----q~cl~e~r~~~~d~~~~~~~~~--~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~ 145 (395)
T KOG2833|consen 76 ---RY-----QRCLREIRRLARDREESEASLP--SNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPE 145 (395)
T ss_pred ---HH-----HHHHHHHHHHhhhhhhhhcccC--cCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHH
Confidence 22 2233322211 111 122345554 56899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048621 193 EIAQLTCEC 201 (456)
Q Consensus 193 el~~la~~~ 201 (456)
++..+|.+.
T Consensus 146 els~iAR~G 154 (395)
T KOG2833|consen 146 ELSRIARQG 154 (395)
T ss_pred HHHHHHhcc
Confidence 999998755
No 62
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=35.56 E-value=1.5e+02 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCCCCCceEEEEEe--cCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 136 FYEYVKAKGLDVGPPVGLDILVDG--IVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 136 v~~~l~~~g~~~~~~~g~~i~i~S--~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
++..+..+|+ .++.+.+.. .+|- .-.+.+++.++++++|++++.++|.+.|.++|.
T Consensus 102 Ll~~a~~~gi-----~ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 102 LLGVSELEGI-----PGACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred HHHHHHHCCC-----CeEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3445566675 345555443 3443 455667778899999999999999999888874
No 63
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=32.01 E-value=37 Score=24.15 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=13.1
Q ss_pred HhhhhhcCCCcHHHHHHH
Q 048621 407 HSCSVLYECSCPELEELV 424 (456)
Q Consensus 407 ~~lr~l~~vS~peld~lv 424 (456)
+.+..+-++|-.|||.|+
T Consensus 7 ea~~~lqevs~eELd~il 24 (51)
T PF04604_consen 7 EALNSLQEVSDEELDQIL 24 (51)
T ss_pred HHHHHHHhcCHHHHHHHh
Confidence 455555578999999875
No 64
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=29.69 E-value=73 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEecceecc
Q 048621 28 AQLRFGNLKSKFIQIFGHAPDVYARSPGRVNL 59 (456)
Q Consensus 28 ~~~~~~~~~~~f~~~fg~~~~~~~~APgri~L 59 (456)
...+..++.+.|++.|+++....+..|..+.+
T Consensus 73 ~~~~i~~Ir~~Yk~rF~QeSV~~~~~p~cvsF 104 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQESVMRVDQPVCVSF 104 (104)
T ss_pred HHHHHHHHHHHHHHHhccceEEEEccceeecC
Confidence 45889999999999999999999999988753
No 65
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=29.26 E-value=1.3e+02 Score=29.05 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHhhhhh--cCCCcHHHHHHHHH-HHhCCCceeeecccCCcc
Q 048621 395 LRRLGDLMNDSHHSCSVL--YECSCPELEELVTV-CRDNGALGARLTGAGWGG 444 (456)
Q Consensus 395 ~~~lG~Lm~~sh~~lr~l--~~vS~peld~lv~~-a~~~GalGaKltGaG~GG 444 (456)
+..-|++......-+.+. -|+|+.|||.+++. .++.|++-|.+..-|+.+
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~ 66 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPF 66 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCc
Confidence 333444444444333333 47999999999994 566899999987777433
No 66
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=28.77 E-value=37 Score=25.24 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCCC
Q 048621 414 ECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESIV 455 (456)
Q Consensus 414 ~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~~ 455 (456)
.++...+..|.++++++|.--.|+|+.. +..+.-++.+++
T Consensus 20 ~i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~ 59 (69)
T PF03460_consen 20 RISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENL 59 (69)
T ss_dssp EEEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGH
T ss_pred EECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHH
Confidence 4788899999999999987788998865 566665666543
No 67
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.67 E-value=4.7e+02 Score=24.81 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=34.8
Q ss_pred CceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 151 VGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 151 ~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
.++.+...+. |-.=..-.+.+++.++++++|++++.++|.+.|.++|.
T Consensus 168 ~~i~Ll~et~-----~~~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~ 215 (238)
T TIGR00161 168 PAICLLAETL-----GPYPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIES 215 (238)
T ss_pred CEEEEEEeCC-----CCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH
Confidence 4666666552 11223445667778899999999999999999988874
No 68
>PF15058 Speriolin_N: Speriolin N terminus
Probab=20.20 E-value=1.6e+02 Score=27.10 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhHHhhhhhc
Q 048621 394 KLRRLGDLMNDSHHSCSVLY 413 (456)
Q Consensus 394 ~~~~lG~Lm~~sh~~lr~l~ 413 (456)
++.++-+||.+||++.|.+.
T Consensus 23 eLKKlVrLirEN~eLksaL~ 42 (200)
T PF15058_consen 23 ELKKLVRLIRENHELKSALG 42 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47778888889999988853
Done!