Query 048621
Match_columns 456
No_of_seqs 183 out of 1581
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 9.3E-79 3.2E-83 635.5 39.1 436 6-455 2-478 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 9.3E-68 3.2E-72 553.7 39.5 418 8-454 18-436 (478)
3 1pie_A Galactokinase; galactos 100.0 4.4E-55 1.5E-59 451.2 39.5 356 23-454 22-382 (419)
4 1wuu_A Galactokinase; galactos 100.0 7.5E-53 2.6E-57 432.0 35.7 342 30-453 18-366 (399)
5 2cz9_A Probable galactokinase; 100.0 7.4E-48 2.5E-52 387.7 32.5 314 48-453 1-316 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 7.6E-49 2.6E-53 396.1 20.2 294 48-453 3-310 (357)
7 3gon_A Phosphomevalonate kinas 100.0 9.3E-47 3.2E-51 376.8 30.8 280 48-453 1-306 (335)
8 3k17_A LIN0012 protein; protei 100.0 7E-46 2.4E-50 375.2 33.7 289 47-453 5-329 (365)
9 2pg9_A Phosphomevalonate kinas 100.0 2.5E-44 8.5E-49 360.5 29.7 280 48-453 3-308 (337)
10 1kvk_A MK, mevalonate kinase; 100.0 3E-44 1E-48 367.6 28.6 304 46-454 3-348 (395)
11 4hac_A Mevalonate kinase; GHMP 100.0 1.8E-39 6.2E-44 323.1 33.3 272 48-453 21-292 (321)
12 2x7i_A Mevalonate kinase; tran 100.0 1.1E-38 3.6E-43 315.6 30.1 274 49-452 7-282 (308)
13 1kkh_A Mevalonate kinase; mixe 100.0 7.4E-38 2.5E-42 310.8 30.4 286 46-453 3-294 (317)
14 2hfs_A Mevalonate kinase, puta 100.0 7.7E-38 2.6E-42 312.6 29.0 291 42-453 7-299 (332)
15 2oi2_A Mevalonate kinase; enzy 100.0 1.4E-35 4.9E-40 290.6 29.6 263 48-452 5-268 (292)
16 1h72_C HK, homoserine kinase; 100.0 1.7E-30 5.8E-35 255.2 26.1 263 49-453 3-268 (296)
17 2v8p_A 4-diphosphocytidyl-2-C- 99.9 4.2E-26 1.4E-30 221.4 18.3 165 46-254 2-171 (271)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 7.6E-25 2.6E-29 216.0 25.7 259 48-453 5-268 (306)
19 3hul_A HSK, HK, homoserine kin 99.9 2.9E-24 9.8E-29 211.2 26.1 252 48-452 2-257 (298)
20 2gs8_A Mevalonate pyrophosphat 99.9 7.9E-24 2.7E-28 209.9 23.1 265 47-453 7-291 (317)
21 2ww4_A 4-diphosphocytidyl-2C-m 99.9 1.6E-23 5.3E-28 204.5 17.5 169 49-255 3-179 (283)
22 3qt5_A Mevalonate diphosphate 99.9 3.7E-22 1.3E-26 198.9 25.4 266 49-453 10-300 (332)
23 1uek_A 4-(cytidine 5'-diphosph 99.9 7.7E-23 2.6E-27 198.7 15.8 156 49-254 2-162 (275)
24 1fi4_A Mevalonate 5-diphosphat 99.8 5.8E-18 2E-22 173.6 30.5 272 49-453 26-334 (416)
25 2hke_A Diphosphomevalonate dec 99.7 1.4E-14 4.9E-19 146.7 27.0 136 50-221 5-154 (380)
26 3lto_A Mevalonate diphosphate 99.6 1.6E-14 5.6E-19 142.3 22.8 63 150-221 90-157 (323)
27 3f0n_A Mevalonate pyrophosphat 99.5 1.8E-12 6.1E-17 130.6 22.3 87 151-251 122-216 (414)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=9.3e-79 Score=635.51 Aligned_cols=436 Identities=34% Similarity=0.561 Sum_probs=364.5
Q ss_pred CCCccccccchhhcCCchhhHHHHHHHHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEE
Q 048621 6 ETPVPTLASLKEVYGEGSQLEEAQLRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIR 85 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~ 85 (456)
.||||++.+|.+ |.+. ++++||.++++.|++.||.+|+++++|||||+|+|||+||+||+||++||+++++++++
T Consensus 2 ~~~vp~~~~~~~-~~~~----~~~~R~~~l~~~F~~~fg~~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~ 76 (520)
T 3v2u_C 2 NTNVPIFSSPVR-DLPR----SFEQKHLAVVDAFFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVK 76 (520)
T ss_dssp CCBCCEESCC----CCH----HHHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEE
T ss_pred CCCCceeccccc-cCcH----HHHHHHHHHHHHHHHHhCCCCCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEE
Confidence 589999999999 9874 46789999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCeEEEEecCCCCCceeeeCCCC---ccccccCCCcchhhhhHHHHHHHHHHHc------CCCCCCCCceEEE
Q 048621 86 KHVSGETEKVLKIANVSDKYSLCTYPAEPD---QELDLKHHQWGHYFICGYKGFYEYVKAK------GLDVGPPVGLDIL 156 (456)
Q Consensus 86 ~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~---~~~~~~~~~w~~~~~~~i~~v~~~l~~~------g~~~~~~~g~~i~ 156 (456)
++. .+ +..|++.|.+..+...+|+++.. ..+++....|.+|++++++++..++++. |. ...||++.
T Consensus 77 ~~~-~~-d~~i~i~S~~~~~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~---~~~G~~i~ 151 (520)
T 3v2u_C 77 ILD-EK-NPSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNT---PLVGAQIF 151 (520)
T ss_dssp ECC-CS-SCEEEEEESSTTSCCEEEECCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSS---CCCCEEEE
T ss_pred ecc-CC-CCEEEEEECCCCCCceEEEeccCccccccCcccccHHHHHHHHHHHHHHHHHhhcccccccC---CCCceEEE
Confidence 851 02 37899998775554456776322 2344445689999999998888888764 33 25899999
Q ss_pred EEecCCCCCCCCchHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCC-
Q 048621 157 VDGIVPTGSGLSSSAAFVCSSTIALMAAF---GVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNP- 232 (456)
Q Consensus 157 i~S~IP~g~GLGSSAA~~vA~~~al~~l~---g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~- 232 (456)
|.|+||+|+|| |||++||++.|++.++ +.++++.+++++|+.+|+++|.+||+|||+++++|+.|+++++||++
T Consensus 152 i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~ 229 (520)
T 3v2u_C 152 CQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPK 229 (520)
T ss_dssp EEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSS
T ss_pred EecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCC
Confidence 99999999999 9999999999999998 77899999999999999999999999999999999999999999999
Q ss_pred CceeeccCCC----CcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcc----hhhcccccccchhhhh
Q 048621 233 IRATDVQLPA----GGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQ----EAISKVKTLSDVEGLC 304 (456)
Q Consensus 233 ~~~~~~~~p~----~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~----~~~~~~~~Lr~~~~~~ 304 (456)
++++++++|+ ++.|+|+||++.++|+.+++++||.|++||+.|+++|++++|++.. .......+||++.+.+
T Consensus 230 l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~ 309 (520)
T 3v2u_C 230 LKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAY 309 (520)
T ss_dssp CEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHH
T ss_pred ceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHhh
Confidence 9999999986 8999999999998999999999999999999999999999886411 1111224789886542
Q ss_pred hh--------hcC-----CCCCCchhHHHHhhhccC--CCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHH
Q 048621 305 VA--------FAG-----KNGSDDPFLAVKEFLHEE--PYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAA 369 (456)
Q Consensus 305 ~~--------~~g-----~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (456)
.. |.+ ..+.+++.+.+.+.+.+. +|+.+++.+.++...+++.++++..+|+ +.++|.+++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~~~l~~RA~ 387 (520)
T 3v2u_C 310 YARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQVLKLYQRAK 387 (520)
T ss_dssp HHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESCBCHHHHHH
T ss_pred hhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--ccccHHHHHHHH
Confidence 11 110 011234555666667653 8999999999886656676677777775 556777999999
Q ss_pred HHHHHHhhHHHHHHHHhcCC--CChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEE
Q 048621 370 HVYSEAKRVYAFKDTVYSNL--SDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAV 447 (456)
Q Consensus 370 ~~~~E~~rv~~~~~al~~~d--~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i 447 (456)
|+++|+.||++++++|++++ ++.++++.||+||+++|.+||++|+||||+||.|+++|++.|++||||||||||||+|
T Consensus 388 HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~i 467 (520)
T 3v2u_C 388 HVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTI 467 (520)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEE
Confidence 99999999999999999863 1234699999999999999999999999999999999999999999999999999999
Q ss_pred EEe---cCCCC
Q 048621 448 VLV---KESIV 455 (456)
Q Consensus 448 ~L~---~~~~~ 455 (456)
+|+ +++.+
T Consensus 468 aLv~~~~~~~~ 478 (520)
T 3v2u_C 468 HLVPSGANGNV 478 (520)
T ss_dssp EEEEESTTCSH
T ss_pred EEEcCCCHHHH
Confidence 999 65543
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=9.3e-68 Score=553.69 Aligned_cols=418 Identities=42% Similarity=0.713 Sum_probs=350.3
Q ss_pred CccccccchhhcCCchhhHHHHHHHHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEec
Q 048621 8 PVPTLASLKEVYGEGSQLEEAQLRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKH 87 (456)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~ 87 (456)
-||++++|.++|++ . +++++||.++++.|++.||.+|+++++||||++|+|||+||+|+++|++||++++++.++++
T Consensus 18 ~~~~~~~~~~~y~~--~-~~~~~r~~~~~~~f~~~fg~~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~ 94 (478)
T 2a2c_A 18 QGHMATESPATRRV--Q-VAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPV 94 (478)
T ss_dssp ----CCCCCCEEEE--C-GGGCHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEEC
T ss_pred EeecccchHhhccc--c-HHHHHHHHHHHHHHHHHhCCCCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEEC
Confidence 38999999999986 2 55888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCeEEEEecCCCCCceeeeCCCC-ccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCC
Q 048621 88 VSGETEKVLKIANVSDKYSLCTYPAEPD-QELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSG 166 (456)
Q Consensus 88 ~~~~~~~~i~i~s~~~~~~~~~~~l~~~-~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~G 166 (456)
++ ..+++.+.+.+|. .|+++.. .+.+.....|.||+++++++++..+.. + ...|+++.+.|+||+|+|
T Consensus 95 ---~~-~~i~i~~~~~~~~--~~~~~~~~l~~~~~~~~~~n~v~~a~~~v~~~~~~-~----~~~g~~i~i~s~IP~g~G 163 (478)
T 2a2c_A 95 ---KT-YALQLANTNPLYP--DFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGL-S----NLTGMNCLVDGNIPPSSG 163 (478)
T ss_dssp ---SS-SCEEEEESSTTSC--CEEECCCCC--CCSSCCHHHHHHHHHHHHHHHTTC-C----SCCCEEEEEEECSCTTSS
T ss_pred ---CC-CeEEEEECCCCCc--ceeccchhcccCCCcccHHHHHHHHHHHHHHHHhc-c----CCCceEEEEECCCCCCCC
Confidence 54 6788887654333 2333211 112234567999999888888776643 1 147999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEE
Q 048621 167 LSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTF 246 (456)
Q Consensus 167 LGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ 246 (456)
||||||++||++.|++.++|.++++++++++|+.+|+++|+++|+|||+++++|+.|++++++|.|..++++++|+++.|
T Consensus 164 LgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~~~~~~~~ 243 (478)
T 2a2c_A 164 LSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVF 243 (478)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEE
T ss_pred chHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEecCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999977789999999988999999888999
Q ss_pred EEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhcc
Q 048621 247 VIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHE 326 (456)
Q Consensus 247 ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~ 326 (456)
+|++|+++.++..+ ..||.|+.||+.|+++|.+++++++. .+++||++.+.+ ...+.++++.|++.+.+
T Consensus 244 vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~~~----~~~~l~d~~~~~-----~~~~~~~v~~v~~~~~~ 312 (478)
T 2a2c_A 244 VIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQWD----KVLRLEEVQAKL-----GISLEEMLLVTEDALHP 312 (478)
T ss_dssp EEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCCTT----TCCCHHHHHHHH-----TCCHHHHHHHHHHHSCS
T ss_pred EEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhccccc----ccchHHhhhhhh-----cccHHHHHHHHHHhccc
Confidence 99999998765444 79999999999999999998876532 345788775443 12344788999999998
Q ss_pred CCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhH
Q 048621 327 EPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSH 406 (456)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh 406 (456)
.+++.+++.+.++...+++.+.+++..|. ..+.|.+++|+.|+++|+.|+.+++++|++. .+++++.||++|+++|
T Consensus 313 ~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~--~~~d~~~lg~lm~~sh 388 (478)
T 2a2c_A 313 EPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEA--PENMVQLLGELMNQSH 388 (478)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 88888888888887666666555554442 3344568899999999999999999999971 1136999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCC
Q 048621 407 HSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 407 ~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
.++|++|+||||++|+|+++|++.|++|+||||||||||+++|++++.
T Consensus 389 ~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~ 436 (478)
T 2a2c_A 389 MSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADK 436 (478)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGG
T ss_pred HHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHH
Confidence 999999999999999999999999999999999999999999998754
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=4.4e-55 Score=451.24 Aligned_cols=356 Identities=30% Similarity=0.466 Sum_probs=285.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCC-EEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEec
Q 048621 23 SQLEEAQLRFGNLKSKFIQIFGHAPD-VYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANV 101 (456)
Q Consensus 23 ~~~~~~~~~~~~~~~~f~~~fg~~~~-~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~ 101 (456)
++.+++..++.++++.|++.||.+|+ ++++||||++|+|||+||+|+++|++||++++++.++++ ++ ..+++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~---~~-~~i~i~~~ 97 (419)
T 1pie_A 22 SIVVENSTVLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLR---ED-KKVKLYSE 97 (419)
T ss_dssp -------CHHHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEEC---SS-SEEEEEET
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEEC---CC-CEEEEEEC
Confidence 35567888999999999999999999 999999999999999999999999999999999999997 54 67888765
Q ss_pred CCC-CCceeeeCCCCccccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHH
Q 048621 102 SDK-YSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIA 180 (456)
Q Consensus 102 ~~~-~~~~~~~l~~~~~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~a 180 (456)
+.. .....|+++... .+....|.||++ .++..+.+.+.. ...|++|.+.|+||+++|||||||++||++.|
T Consensus 98 ~~~~~~~~~~~~~~~~--~~~~~~~~n~v~----~~~~~l~~~g~~--~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~a 169 (419)
T 1pie_A 98 NFPKLGVIEFDLDEVE--KKDGELWSNYVK----GMIVMLKGAGYE--IDKGFELLIKGEIPTASGLSSSASLELLVGVV 169 (419)
T ss_dssp TCGGGCCEEEETTCTT--SCCTTCTHHHHH----HHHHHHHHTTCC--CCSCEEEEEEECSCTTSSSCHHHHHHHHHHHH
T ss_pred CCCCcceeEEeccccc--CCCCcCHHHHHH----HHHHHHHHhCCC--CCCCEEEEEECCCCCCCChhHHHHHHHHHHHH
Confidence 321 011234443110 112357999984 555566665543 23799999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCC-CCcEEEEEecCCccccc
Q 048621 181 LMAAFGVEVPKKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLP-AGGTFVIAHSLAESLKA 258 (456)
Q Consensus 181 l~~l~g~~ls~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p-~~~~~ll~~s~~~~~~~ 258 (456)
+++++|.++++++++++|..+|+ +.|.++|++|++++++||.+.++++++.+..++++++| +++.+++++|+++ +
T Consensus 170 l~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~~~~~~vl~~~~~~---~ 246 (419)
T 1pie_A 170 LDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKP---R 246 (419)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCC---C
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCCCCcEEEEEECCCc---c
Confidence 99999999999999999999997 67778888999999999988888899888888999887 5899999999985 4
Q ss_pred cccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHH
Q 048621 259 VTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKII 338 (456)
Q Consensus 259 ~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 338 (456)
.+..+.||.|+.||+.|.+.|.+..++ ..|++... +++.++.
T Consensus 247 ~t~~~~y~~r~~~~~~a~~~l~~~~~v---------~~l~~~~~-----------------------------~~~~~~~ 288 (419)
T 1pie_A 247 ALTESKYNERFAETREALKRMQTRLDI---------QSLGELSN-----------------------------EEFDANT 288 (419)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCCC---------SSGGGCCH-----------------------------HHHHHTG
T ss_pred ccccchHHHHHHHHHHHHHHHhhcccc---------CchhhCCH-----------------------------HHHHHHH
Confidence 566689999999999999988764221 13333211 1111110
Q ss_pred hhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcH
Q 048621 339 EEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCP 418 (456)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~p 418 (456)
+.+| ....++|+.|+++|+.|+.+++++|+++| ++.||++|+++|.++++.|++++|
T Consensus 289 ------------~~l~------~~~~~~~~~~~v~e~~r~~~~~~al~~~d-----~~~lg~lm~~~~~~l~~~~~~~~p 345 (419)
T 1pie_A 289 ------------DLIG------DETLIKRARHAVYENNRTKIAQKAFVAGN-----LTKFGELLNASHASLKDDYEVTGL 345 (419)
T ss_dssp ------------GGTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred ------------hhcC------cHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhhCCCCH
Confidence 0111 01257789999999999999999999986 999999999999999998899999
Q ss_pred HHHHHHHHHHhC-CCceeeecccCCcceEEEEecCCC
Q 048621 419 ELEELVTVCRDN-GALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 419 eld~lv~~a~~~-GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
++|+|++.+++. |++|+||||||||||+++|++++.
T Consensus 346 ~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~ 382 (419)
T 1pie_A 346 ELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDN 382 (419)
T ss_dssp HHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGG
T ss_pred HHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhh
Confidence 999999999997 999999999999999999998653
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=7.5e-53 Score=431.97 Aligned_cols=342 Identities=31% Similarity=0.467 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCC---
Q 048621 30 LRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYS--- 106 (456)
Q Consensus 30 ~~~~~~~~~f~~~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~--- 106 (456)
.+++++.+.|++.||.+|+++++||||++|+|||+||+|+.+|++||++++++.++++ ++ ..+++.+.+....
T Consensus 18 ~~~~~~~~~f~~~~~~~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~---~~-~~i~i~~~~~~~~~~~ 93 (399)
T 1wuu_A 18 ELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPR---KD-GLVSLLTTSEGADEPQ 93 (399)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEE---TT-CEEEEEECCSSSCSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEEC---CC-CeEEEEECCCCCcccc
Confidence 6677899999999999999999999999999999999999999999999999999987 54 6788887543211
Q ss_pred ceeeeCCCCc-cccccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHh
Q 048621 107 LCTYPAEPDQ-ELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAF 185 (456)
Q Consensus 107 ~~~~~l~~~~-~~~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~ 185 (456)
...|+++... ........|.||+. .++..+ .+.. ..|++|.+.|+||+|+|||||||++||++.|+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~n~v~----~a~~~l--~~~~---~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~ 164 (399)
T 1wuu_A 94 RLQFPLPTAQRSLEPGTPRWANYVK----GVIQYY--PAAP---LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLC 164 (399)
T ss_dssp EEEEECCCSSCCCCCCSSGGGHHHH----HHHHHC--SSSC---CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHS
T ss_pred ceEEecCccccccccCCCCHHHHHH----HHHHHh--cCCC---CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 0124432100 01123456999985 444444 3432 479999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCC-CcEEEEEecCCcccccccccc
Q 048621 186 GVEVPKKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPA-GGTFVIAHSLAESLKAVTAAT 263 (456)
Q Consensus 186 g~~ls~~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~ 263 (456)
|.++++++++++|..+|+ +.|.++|++||+++++||.++++++++.+..++++++|. ++.+++++|+++ ++|...
T Consensus 165 ~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~---~~t~~~ 241 (399)
T 1wuu_A 165 PDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVR---HSLASS 241 (399)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEE---C--CTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCCCCeEEEEEECCCc---cccccc
Confidence 999999999999999997 667777779999999999888888998888888888873 899999999884 556667
Q ss_pred chhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhh
Q 048621 264 NYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLS 343 (456)
Q Consensus 264 ~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
.||.|+.||+.|.+.|... .++++.. +++.+.+
T Consensus 242 ~y~~r~~~~~~a~~~l~~~-------------~l~~~~~-----------------------------~~~~~~~----- 274 (399)
T 1wuu_A 242 EYPVRRRQCEEVARALGKE-------------SLREVQL-----------------------------EELEAAR----- 274 (399)
T ss_dssp THHHHHHHHHHHHHHTTCS-------------STTSCCH-----------------------------HHHTTGG-----
T ss_pred cHHHHHHHHHHHHHHhChh-------------hhhcCCH-----------------------------HHHHHHH-----
Confidence 9999999999988776432 2332110 1111000
Q ss_pred hhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHH
Q 048621 344 SIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEEL 423 (456)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~l 423 (456)
+.++. ..++|+.|++.|+.|+.+++++|+++| ++.||++|+++|.++++.+++++|++|++
T Consensus 275 -------~~l~~-------~~~~r~~~~~~e~~r~~~~~~al~~~d-----~~~lg~~m~~~h~~l~~~~~~~~p~l~~l 335 (399)
T 1wuu_A 275 -------DLVSK-------EGFRRARHVVGEIRRTAQAAAALRRGD-----YRAFGRLMVESHRSLRDDYEVSCPELDQL 335 (399)
T ss_dssp -------GGSCH-------HHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred -------hhcCH-------HHHHHHHHHHhhHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00110 247788999999999999999999986 99999999999999998889999999999
Q ss_pred HHHHHh-CCCceeeecccCCcceEEEEecCC
Q 048621 424 VTVCRD-NGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 424 v~~a~~-~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
++.+++ .|++|+||||||||||+++|++++
T Consensus 336 ~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~ 366 (399)
T 1wuu_A 336 VEAALAVPGVYGSRMTGGGFGGCTVTLLEAS 366 (399)
T ss_dssp HHHHHTSTTEEEEEECSSCSEEEEEEEEEGG
T ss_pred HHHHHhcCCceEEeeecCCCccEEEEEEccc
Confidence 999999 699999999999999999999865
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=7.4e-48 Score=387.74 Aligned_cols=314 Identities=27% Similarity=0.413 Sum_probs=254.4
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeee-CCCCccccccCCCcc
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYP-AEPDQELDLKHHQWG 126 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~-l~~~~~~~~~~~~w~ 126 (456)
+++++|||||+|+|||+||+|+++|++||++++++.++++ ++ ..+++.+.+ +. ...+ ++ .+..+.|.
T Consensus 1 m~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~---~~-~~i~i~~~~--~~-~~~~~l~-----~~~~~~~~ 68 (350)
T 2cz9_A 1 MIKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKH---GE-VILYSEHFG--EE-RKFSLND-----LRKENSWI 68 (350)
T ss_dssp CEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEE---SS-EEEEETTTT--EE-EEECTTC-----CCCCSSTH
T ss_pred CeEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEEC---CC-CeEEEEECC--CC-ccccccC-----CCCCCcHH
Confidence 3678999999999999999999999999999999999987 43 557664322 10 0111 21 01235788
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hh
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YI 205 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~-~~ 205 (456)
||++ .+...+++.+.. ..|++|.+.|+||+++|||||||++||++.|+++++|.++++++++++|..+|. +.
T Consensus 69 ~~~~----~~~~~l~~~~~~---~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~ 141 (350)
T 2cz9_A 69 DYVK----GIFWVLKESDYE---VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFV 141 (350)
T ss_dssp HHHH----HHHHHHHHTTCC---CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHH----HHHHHHHhcCCC---CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 9874 555556665542 479999999999999999999999999999999999999999999999999996 67
Q ss_pred CCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCC
Q 048621 206 GAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGM 285 (456)
Q Consensus 206 ~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~ 285 (456)
+.++|.+|++++++|+.++++++++.+..++++++|+++.+++++|++++ .+....||.|+.||+.|++.++.+
T Consensus 142 g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~~~~~~vl~~~~~~~---~~~t~~~~~r~~~~~~a~~~~~~~--- 215 (350)
T 2cz9_A 142 GVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRR---ELASSEYAERKHIAEESLKILGKG--- 215 (350)
T ss_dssp CCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCCccchhHHHHHhcCCCeEEEEecCCCcEEEEcCCCCcEEEEEECCCCC---ccccchHHHHHHHHHHHHHHhChh---
Confidence 88888899999999998889999998888899998888999999999853 233446999999999998876422
Q ss_pred CcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHH
Q 048621 286 KPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLH 365 (456)
Q Consensus 286 ~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (456)
.||+... ++ + ..+|. .++
T Consensus 216 ----------~lr~~~~-----------------------------~~-----------~-----~~l~~-------~~~ 233 (350)
T 2cz9_A 216 ----------SSKEVRE-----------------------------GE-----------L-----SKLPP-------LHR 233 (350)
T ss_dssp ----------CGGGCCG-----------------------------GG-----------G-----GGSCH-------HHH
T ss_pred ----------hhhhCCH-----------------------------HH-----------H-----hhCCH-------HHH
Confidence 3443211 00 0 00110 135
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcce
Q 048621 366 QRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGC 445 (456)
Q Consensus 366 ~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~ 445 (456)
++..|++.|+.|+.+++++|.++| ++.||++|+++|.+|++.+++++|++|++++.+++.|++|+||||||||||
T Consensus 234 ~~~~~~~~~~~~~~~~~~al~~~d-----~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~ 308 (350)
T 2cz9_A 234 KFFGYIVRENARVLEVRDALKEGN-----VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGS 308 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSE
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceE
Confidence 577888899999999999999886 999999999999999997899999999999999999999999999999999
Q ss_pred EEEEecCC
Q 048621 446 AVVLVKES 453 (456)
Q Consensus 446 ~i~L~~~~ 453 (456)
+++|++++
T Consensus 309 v~~l~~~~ 316 (350)
T 2cz9_A 309 AIALVDKE 316 (350)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchh
Confidence 99999865
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.6e-49 Score=396.12 Aligned_cols=294 Identities=18% Similarity=0.257 Sum_probs=214.3
Q ss_pred CEEEEecceeccccccccc------CCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 48 DVYARSPGRVNLIGEHIDY------EGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~------~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
+++++|||||+|+|||+|| +||.+|++|||+++++.++++ ++ ..+++.+.+.. ....|+++. .+ .
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~---~d-~~i~i~s~~~~-~~~~~~~~~--~~--~ 73 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEET---NS-GRIEINAYDAQ-CCKSYLSMS--QL--E 73 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEEC---SS-SEEEEEETTTT-EEEEEECCS--SC--C
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEEC---CC-CeEEEEECCCC-ceEEEeccc--cc--c
Confidence 4789999999999999999 899999999999999999998 65 78999886431 112354432 11 2
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
...|.||++ +++..+.+.+.. ...||++.+.|+||+|+|||||||++||++.|++++++.++++++++++|..+
T Consensus 74 ~~~~~~~v~----~~~~~l~~~~~~--~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~ 147 (357)
T 3k85_A 74 IDGEASLIK----GVYNRIIRDYRL--EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEI 147 (357)
T ss_dssp CCSSSHHHH----HHHHHHHHHTTC--CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ccchHHHHH----HHHHHHHHhcCC--CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 357999985 555666665531 14799999999999999999999999999999999999999999999999999
Q ss_pred hh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCC------cEEEEEecCCccccccccccchhhHHHHHHH
Q 048621 202 ER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAG------GTFVIAHSLAESLKAVTAATNYNNRVVECRL 274 (456)
Q Consensus 202 E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~------~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~ 274 (456)
|+ ++|.+||.+||+++++||...+.+.++.+..++++++|+. +.++|++|+.+++++.
T Consensus 148 E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~--------------- 212 (357)
T 3k85_A 148 ERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAA--------------- 212 (357)
T ss_dssp HHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC-----------------------
T ss_pred HHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCcccHHH---------------
Confidence 97 7788888899999999996544444445566788888753 5799999987433211
Q ss_pred HHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchh
Q 048621 275 AAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLD 354 (456)
Q Consensus 275 a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (456)
+| ++ +...+... +
T Consensus 213 ---~l------------------~~--------------------~~~~~~~~--------------------------~ 225 (357)
T 3k85_A 213 ---II------------------NE--------------------QKKNTSEG--------------------------N 225 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HH------------------HH--------------------HHHHhhcC--------------------------c
Confidence 11 00 00000000 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhh-cCCCcHHHHHHHHHHHhCCCc
Q 048621 355 VLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVL-YECSCPELEELVTVCRDNGAL 433 (456)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l-~~vS~peld~lv~~a~~~Gal 433 (456)
..+.++.|.+.| |+.+++++|+++| ++.||++|+++|.+++++ ++||+|++|+|++.|++.|++
T Consensus 226 --------~~~~~~~~~i~~--~~~~~~~aL~~~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~ 290 (357)
T 3k85_A 226 --------QTAIEAMHKIKQ--SAIDTKLALLKGD-----VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAM 290 (357)
T ss_dssp --------CCTTHHHHHHHH--HHHHHHHHHTTTC-----HHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCS
T ss_pred --------HHHHHHHHHHHH--HHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCe
Confidence 012344555554 7888999999886 999999999999999998 899999999999999999999
Q ss_pred eeeecccCCcceEEEEecCC
Q 048621 434 GARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 434 GaKltGaG~GG~~i~L~~~~ 453 (456)
|+||||||+|||+++|++++
T Consensus 291 GaklsGaG~gG~vial~~~~ 310 (357)
T 3k85_A 291 AGKVSGAGGGGFIMFVVEPT 310 (357)
T ss_dssp EEEECCCC---CEEEECCHH
T ss_pred EeEecccCCCCEEEEEecHH
Confidence 99999999999999999754
No 7
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=9.3e-47 Score=376.85 Aligned_cols=280 Identities=16% Similarity=0.155 Sum_probs=220.4
Q ss_pred CEEEEecceecccccccccC-CCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcc
Q 048621 48 DVYARSPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWG 126 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~-G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~ 126 (456)
++.++||||++|+|||+|+| |+++|++||++|+++.++++ ++ .+ |.+...++ .+++ ..+.+.
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~---~~-~~--i~~~~~~~---~~~~--------~~~~~~ 63 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFS---DS-YR--IYSDMFDF---AVDL--------RPNPDY 63 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC---SS-CE--EEETTSSS---CBCS--------SCCTTT
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEEC---CC-CE--EEEeCCCc---cccc--------CcCCCc
Confidence 57899999999999999998 99999999999999999998 54 44 44432211 1111 112334
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCC---CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTG---SGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g---~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
+++..+++.+..+++..+.+ ..|+++.|.|++|.+ +|||||||++||++.|++.++++++++++++++|+.+|+
T Consensus 64 ~~~~~~i~~~~~~l~~~~~~---~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~ 140 (335)
T 3gon_A 64 SLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL 140 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---CCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence 67777888898999888764 689999999999977 699999999999999999999999999999999999999
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCC---------------------CceeeccCCCCcEEEEEecCCccccccccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNP---------------------IRATDVQLPAGGTFVIAHSLAESLKAVTAA 262 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~---------------------~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~ 262 (456)
.+++++|+|||++++|||. +.|..+++ ...++++.|.++.+++++++.+.++.
T Consensus 141 ~~~g~~sg~D~a~a~~Gg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~---- 214 (335)
T 3gon_A 141 KRGDNGSMGDLACIAAEDL--VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSS---- 214 (335)
T ss_dssp HTTCCSCSHHHHHHHHTSC--EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHH----
T ss_pred HhcCCCCCCCcceeecCCe--EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHH----
Confidence 8889999999999999984 33433321 23456666778999999998754321
Q ss_pred cchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhh
Q 048621 263 TNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKL 342 (456)
Q Consensus 263 ~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
++++.|++.+..
T Consensus 215 ----------------------------------------------------~~v~~v~~~~~~---------------- 226 (335)
T 3gon_A 215 ----------------------------------------------------HMVQQIKQNINQ---------------- 226 (335)
T ss_dssp ----------------------------------------------------HHHHHHGGGCCH----------------
T ss_pred ----------------------------------------------------HHHHHHHHHhHH----------------
Confidence 111111111000
Q ss_pred hhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhh-cCCCcHHHH
Q 048621 343 SSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVL-YECSCPELE 421 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l-~~vS~peld 421 (456)
.++.....++.+++++|+++| ++.||+||+++|.+|+++ +++|+|++|
T Consensus 227 --------------------------~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~ld 275 (335)
T 3gon_A 227 --------------------------NFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLR 275 (335)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 011122346778999999886 999999999999999997 479999999
Q ss_pred HHHHHHHhCCCceeeecccCCcceEEEEecCC
Q 048621 422 ELVTVCRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 422 ~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
+|++.|++.|+ ||||||||||||+|+|++++
T Consensus 276 ~l~~~a~~~g~-~akltGAG~Ggc~ial~~~~ 306 (335)
T 3gon_A 276 QLKEASQDLQA-VAKSSGAGGGDCGIALSFDA 306 (335)
T ss_dssp HHHHTTTTSSE-EEEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHhCCc-EEEEccccchheEEEEECCH
Confidence 99999999996 99999999999999999753
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=7e-46 Score=375.24 Aligned_cols=289 Identities=16% Similarity=0.234 Sum_probs=227.1
Q ss_pred CCEEEEecceeccccccccc-CCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCc-eeeeCCCCccccccCCC
Q 048621 47 PDVYARSPGRVNLIGEHIDY-EGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSL-CTYPAEPDQELDLKHHQ 124 (456)
Q Consensus 47 ~~~~~~APgri~L~GEh~d~-~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~-~~~~l~~~~~~~~~~~~ 124 (456)
.+++++||||++|+|||+|| +|+++|++||++++++.++++ ++ . +|.+.. |.. ..|+++. .++.....
T Consensus 5 ~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~---~~-~--~i~s~~--~~~~~~~~~~~--~~~~~~~~ 74 (365)
T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDS---ER-N--ELWIPH--YENPVSWPIGG--ELKPDGEH 74 (365)
T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC---SS-C--EEECTT--CSSCBCCCTTS--CCCCSCGG
T ss_pred eEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEEC---CC-c--EEEecC--CCcceeeeccc--CCCCCCCh
Confidence 36899999999999999999 599999999999999999998 54 4 455543 211 1233221 12223356
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCC----CCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048621 125 WGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPT----GSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCE 200 (456)
Q Consensus 125 w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~----g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~ 200 (456)
| +|++++++.+.+++.+.|.+ ..||++.|.|+||. ++|||||||++||++.|++++++.++++++++++|+.
T Consensus 75 ~-~yv~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~ 150 (365)
T 3k17_A 75 W-TFTAEAINIATTFLKSEGIE---LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAAL 150 (365)
T ss_dssp G-HHHHHHHHHHHHHHHHTTCC---CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 7 99999988888888877763 58999999999996 5799999999999999999999999999999999999
Q ss_pred HhhhhCCCCCcchhhhhhhccCCcEEEee-cC----------------------CCceeeccCCCCcEEEEEecCCcccc
Q 048621 201 CERYIGAQSGGMDQAISIMAKSGFAELID-FN----------------------PIRATDVQLPAGGTFVIAHSLAESLK 257 (456)
Q Consensus 201 ~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~-~~----------------------~~~~~~~~~p~~~~~ll~~s~~~~~~ 257 (456)
+|+.+++++|++|++++++|| +++++ |. +..++++++|.+ .++++||+++.++
T Consensus 151 ~E~~~~g~~~g~D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT 226 (365)
T 3k17_A 151 SHLVVQGNGSCGDIASCMYGG---WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVST 226 (365)
T ss_dssp HHHHHHSSCCSHHHHHHHHCS---EEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCH
T ss_pred HHHHhCCCCCcccHHHHhcCC---EEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccch
Confidence 998666699999999999998 33433 43 346778888877 9999999986442
Q ss_pred ccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHH
Q 048621 258 AVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKI 337 (456)
Q Consensus 258 ~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 337 (456)
.. +++.|++.....
T Consensus 227 ~~--------------------------------------------------------~~~~v~~~~~~~---------- 240 (365)
T 3k17_A 227 GK--------------------------------------------------------LVSQIHAFKQED---------- 240 (365)
T ss_dssp HH--------------------------------------------------------HHHHHHHHHHHC----------
T ss_pred HH--------------------------------------------------------HHHHHHHHHHhC----------
Confidence 11 111111110000
Q ss_pred HhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHH-hhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCC-
Q 048621 338 IEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEA-KRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYEC- 415 (456)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~-~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~v- 415 (456)
-++..++++|. .++.+++++|+++| ++.||++|+++|.+||++ ++
T Consensus 241 ---------------------------~~~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~l-~v~ 287 (365)
T 3k17_A 241 ---------------------------SKNYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQEL-GTK 287 (365)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHH-HHH
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHh-hhh
Confidence 01234556664 46788999999886 999999999999999995 55
Q ss_pred -----CcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCC
Q 048621 416 -----SCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 416 -----S~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
++|++|+|++.|++.|++ +||||||||||+++|++++
T Consensus 288 ~~~~is~p~ld~l~~~a~~~Ga~-ak~sGAGgGg~vial~~~~ 329 (365)
T 3k17_A 288 AGVNIETSLLKELADSAENMGGA-GKSSGSGGGDCGIAFSKTK 329 (365)
T ss_dssp HTCCCSCHHHHHHHHHHHHTTSE-EEECTTCSSSEEEEEESSH
T ss_pred cCCcccCHHHHHHHHHHHhcCCE-EEecCCCCCCEEEEEECCH
Confidence 999999999999999998 9999999999999999763
No 9
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=2.5e-44 Score=360.46 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=221.8
Q ss_pred CEEEEecceeccccccccc-CCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcc
Q 048621 48 DVYARSPGRVNLIGEHIDY-EGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWG 126 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~-~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~ 126 (456)
+++++||||++|+|||+|. +|+++|++||++++++.++++ + .++|.+... .. .++ .. +..+|
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~---~---~~~i~s~~~--~~-~~~------~~-~~~~~- 65 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFS---D---SYRIYSDMF--DF-AVD------LR-PNPDY- 65 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC---S---SCEEEETTS--SS-CBC------SS-CCTTT-
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeC---C---cEEEecCCC--Cc-eee------ec-CCCCc-
Confidence 5789999999999999955 599999999999999999987 3 267776432 11 111 11 23468
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCC---CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTG---SGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g---~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
+|++++++.+.+++...|.. ..||++.+.|+||.+ +|||||||++||++.|++++++.++++++++++|+.+|.
T Consensus 66 ~~v~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~ 142 (337)
T 2pg9_A 66 SLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL 142 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 89988888888888766653 579999999999999 999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCC---------------------CceeeccCCCCcEEEEEecCCccccccccc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNP---------------------IRATDVQLPAGGTFVIAHSLAESLKAVTAA 262 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~---------------------~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~ 262 (456)
++|+++|++|++++++||. +.+..|++ ..++++++|.++.+++++|+++.++.
T Consensus 143 ~~~~~~~~~D~~~~~~Gg~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~---- 216 (337)
T 2pg9_A 143 KRGDNGSMGDLACIAAEDL--VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSS---- 216 (337)
T ss_dssp HTTCCSCSHHHHHHHHTSC--EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHH----
T ss_pred HhCCCCCHHHHHHHHhCCE--EEEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchH----
Confidence 9999999999999999994 33332322 35777888778999999999864321
Q ss_pred cchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhh
Q 048621 263 TNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKL 342 (456)
Q Consensus 263 ~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
.+. +.+++.+. ++
T Consensus 217 -----------~~~-----------------------------------------~~~~~~~~------~~--------- 229 (337)
T 2pg9_A 217 -----------HMV-----------------------------------------QQIKQNIN------QN--------- 229 (337)
T ss_dssp -----------HHH-----------------------------------------HHHGGGCC------HH---------
T ss_pred -----------HHH-----------------------------------------HHHHHHHH------HH---------
Confidence 111 11111000 00
Q ss_pred hhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhc-CCCcHHHH
Q 048621 343 SSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLY-ECSCPELE 421 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~-~vS~peld 421 (456)
..++ .+.++.+++++|.++| ++.||++|+.+|.+++++. ++++|++|
T Consensus 230 ---------------------~~~~------~~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~l~ 277 (337)
T 2pg9_A 230 ---------------------FLTS------SKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLR 277 (337)
T ss_dssp ---------------------HHHH------HHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred ---------------------HHHH------HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHHHH
Confidence 0001 1235667889999886 9999999999999999884 39999999
Q ss_pred HHHHHHHhCCCceeeecccCCcceEEEEecCC
Q 048621 422 ELVTVCRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 422 ~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
+|++.+++.|++ +||||||||||+++|++++
T Consensus 278 ~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~~ 308 (337)
T 2pg9_A 278 QLKEASQDLQAV-AKSSGAGGGDCGIALSFDA 308 (337)
T ss_dssp HHHHTTTTSSEE-EEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHHCCCE-EEEeCCCCccEEEEEECCH
Confidence 999999999999 9999999999999999753
No 10
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=3e-44 Score=367.60 Aligned_cols=304 Identities=22% Similarity=0.252 Sum_probs=223.5
Q ss_pred CCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccc-----c
Q 048621 46 APDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELD-----L 120 (456)
Q Consensus 46 ~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~-----~ 120 (456)
.|+++++|||||+|+|||+||+|+++|++||++++++.++++ ++ ..+++.+.+.+. ...|+++...... +
T Consensus 3 ~~~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~---~~-~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (395)
T 1kvk_A 3 SEVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQ---SN-GKVSLNLPNVGI-KQVWDVATLQLLDTGFLEQ 77 (395)
T ss_dssp CSCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC---SS-SEEEEEETTTTE-EEEEEHHHHHTSCC-----
T ss_pred CCcEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEEC---CC-CeEEEEcCCCCc-eEEEEhHhhhhhhcccccc
Confidence 367899999999999999999999999999999999999998 54 788887654321 1233321100000 0
Q ss_pred ------------------cCCCcchhh-hhHHHHHHHHHHHc-CCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHH
Q 048621 121 ------------------KHHQWGHYF-ICGYKGFYEYVKAK-GLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIA 180 (456)
Q Consensus 121 ------------------~~~~w~~~~-~~~i~~v~~~l~~~-g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~a 180 (456)
....|.+|+ ..+++.++..+... +.. ....|++|.+.|+||+|+|||||||++||++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~-~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~a 156 (395)
T 1kvk_A 78 GDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-RTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAA 156 (395)
T ss_dssp -----------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTS-SSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccc-cCCCCEEEEEEecCCCCCCccHHHHHHHHHHHH
Confidence 123798985 22334555444332 320 014799999999999999999999999999999
Q ss_pred HHHHhCC-----CCC-------H---HHHHHHHHHHhh-hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCc
Q 048621 181 LMAAFGV-----EVP-------K---KEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGG 244 (456)
Q Consensus 181 l~~l~g~-----~ls-------~---~el~~la~~~E~-~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~ 244 (456)
++++++. +++ + .+++++|+.+|+ +.|.++|. |++++++|| +++ +++..++++++++++
T Consensus 157 l~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg---~~~--~~~~~~~~l~~~~~~ 230 (395)
T 1kvk_A 157 LLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGG---ALR--YQQGKMSSLKRLPAL 230 (395)
T ss_dssp HHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCS---EEE--ESSSCEEECSCCCCE
T ss_pred HHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcc---eEE--EcCCCceeccCCCCc
Confidence 9999998 788 7 566777999998 55555555 999999998 333 345577888876789
Q ss_pred EEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhh
Q 048621 245 TFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFL 324 (456)
Q Consensus 245 ~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~ 324 (456)
.+++++|+++.++.. + ++.+++..
T Consensus 231 ~~vl~~~~~~~~T~~------------~--------------------------------------------~~~~~~~~ 254 (395)
T 1kvk_A 231 QILLTNTKVPRSTKA------------L--------------------------------------------VAGVRSRL 254 (395)
T ss_dssp EEEEEECCCCCCHHH------------H--------------------------------------------HHHHHHHH
T ss_pred EEEEEECCCCCchHH------------H--------------------------------------------HHHHHHHH
Confidence 999999998644321 0 00011100
Q ss_pred ccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHH-HHHHhcCCCChHHHHHHHHHHH
Q 048621 325 HEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAF-KDTVYSNLSDEDKLRRLGDLMN 403 (456)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~-~~al~~~d~~~~~~~~lG~Lm~ 403 (456)
... .+.. ..+++++.|++.|+.|+..+ +.+|.++ +++.||++|+
T Consensus 255 ~~~---------------~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~al~~~-----d~~~lg~lm~ 299 (395)
T 1kvk_A 255 IKF---------------PEIM---------------APLLTSIDAISLECERVLGEMAAAPVPE-----QYLVLEELMD 299 (395)
T ss_dssp HHS---------------HHHH---------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH-----HHHHHHHHHH
T ss_pred HHC---------------HHHH---------------HHHHHHHHHHHHHHHHHHHhhhccccHH-----HHHHHHHHHH
Confidence 000 0000 02467788888888887765 4666554 6999999999
Q ss_pred HhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEEEEecCCC
Q 048621 404 DSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKESI 454 (456)
Q Consensus 404 ~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i~L~~~~~ 454 (456)
++|.+|++ +++++|++|++++.+++.|+ |+||||||||||+++|++++.
T Consensus 300 ~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~ 348 (395)
T 1kvk_A 300 MNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGL 348 (395)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTTC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCCC
Confidence 99999998 79999999999999999999 999999999999999998764
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=1.8e-39 Score=323.10 Aligned_cols=272 Identities=26% Similarity=0.298 Sum_probs=202.0
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
+++++|||||+|+|||+||+|+++|++||++++++.+++. + . +++.+.+. ... ++ . ...+|.+
T Consensus 21 mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~---~--~-i~i~~~~~---~~~--~~----~--~~~~~~~ 83 (321)
T 4hac_A 21 MVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELN---D--S-ITIQSQIG---RTG--LD----F--EKHPYVS 83 (321)
T ss_dssp CEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEEC---S--S-EEEEETTE---EES--SC----T--TTSHHHH
T ss_pred EEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEEC---C--C-EEEEECCC---Ccc--cc----c--chhHHHH
Confidence 4899999999999999999999999999999999999986 3 3 77776421 011 11 1 1123433
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
.+...++..+. ..|++|.+.|+||+++|||||||++||++.|++++++.++++++++++|..+|+.+++
T Consensus 84 -------~~~~~l~~~~~----~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 152 (321)
T 4hac_A 84 -------AVIEKMRKSIP----INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQG 152 (321)
T ss_dssp -------HHHHHHTTTSC----CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHhCC----CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Confidence 33444544442 5799999999999999999999999999999999999999999999999999986666
Q ss_pred CCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCc
Q 048621 208 QSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKP 287 (456)
Q Consensus 208 ~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~ 287 (456)
.+|++|++++++|| ++++ .+. +.+++| ++.+++++|+++.++.. +....+.+
T Consensus 153 ~~~~~D~~~~~~Gg---~~~~-~~~---~~l~~p-~~~~vlv~p~~~~sT~~------------~~~~~~~l-------- 204 (321)
T 4hac_A 153 AASPTDTYVSTFGG---VVTI-PER---RKLKTP-DCGIVIGDTGVFSSTKE------------LVANVRQL-------- 204 (321)
T ss_dssp CCCSHHHHHHHHCS---EEEE-TTC---CEECCC-CCEEEEEECCCCCCHHH------------HHHHHHHH--------
T ss_pred CCcHHHHHHHHcCC---eEEE-cCC---ceeccC-CCEEEEEECCCCccHHH------------HHHHHHHH--------
Confidence 69999999999998 4444 222 233466 79999999998644321 11100000
Q ss_pred chhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHH
Q 048621 288 QEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQR 367 (456)
Q Consensus 288 ~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (456)
++ .. .+.+.+ ...+
T Consensus 205 ----------~~--------------------------~~---~~~~~~---------------------------~~~~ 218 (321)
T 4hac_A 205 ----------RE--------------------------SY---PDLIEP---------------------------LMTS 218 (321)
T ss_dssp ----------HH--------------------------HC---HHHHHH---------------------------HHHH
T ss_pred ----------Hh--------------------------cC---HHHHHH---------------------------HHHH
Confidence 00 00 000000 0111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceEE
Q 048621 368 AAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAV 447 (456)
Q Consensus 368 ~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~i 447 (456)
+.+ .+.+++.+|.++| ++.||++|+.+|..+++ +++++|++|++++.+++.|++|+||||+|+|||++
T Consensus 219 ~~~------~~~~~~~al~~~d-----~~~lg~~~~~~~~~~~~-~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~ 286 (321)
T 4hac_A 219 IGK------ISRIGEQLVLSGD-----YASIGRLMNVNQGLLDA-LGVNILELSQLIYSARAAGAFGAKITGAGGGGCMV 286 (321)
T ss_dssp HHH------HHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEE
T ss_pred HHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEE
Confidence 111 2446778898886 99999999999987766 58999999999999999999999999999999999
Q ss_pred EEecCC
Q 048621 448 VLVKES 453 (456)
Q Consensus 448 ~L~~~~ 453 (456)
+|++++
T Consensus 287 al~~~~ 292 (321)
T 4hac_A 287 ALTAPE 292 (321)
T ss_dssp EEECST
T ss_pred EEcCHH
Confidence 999544
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-38 Score=315.60 Aligned_cols=274 Identities=21% Similarity=0.286 Sum_probs=207.0
Q ss_pred EEEEecceecccccccccCCCeeeeeecccc-eEEEEEecccCCCCCe-EEEEecCCCCCceeeeCCCCccccccCCCcc
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQD-TIVAIRKHVSGETEKV-LKIANVSDKYSLCTYPAEPDQELDLKHHQWG 126 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~-~~v~v~~~~~~~~~~~-i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~ 126 (456)
++++|||||+|+|||+||+|+++|+++|+++ +++.++++ ++ .. +++.+.... .+++ ....|.
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~---~~-~~~i~~~~~~~~-----~~~~-------~~~~~~ 70 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEAL---ES-GNYSSIKSDVYD-----GMLY-------DAPDHL 70 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEEC---CT-TCCCEEEEEECS-----SCCC-------CTTSCH
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEEC---CC-CCeeEEEecCCC-----CChh-------hhhHHH
Confidence 6899999999999999999999999999995 99999987 44 44 666543210 0111 113587
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIG 206 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~ 206 (456)
+++. .++..+.+. ..|++|.+.|+||+++|||||||+++|++.|++++++.++++++++++|..+|+..+
T Consensus 71 ~~v~----~~~~~~~~~------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~ 140 (308)
T 2x7i_A 71 KSLV----NRFVELNNI------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAH 140 (308)
T ss_dssp HHHH----HHHHHHTTC------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhh------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHC
Confidence 8874 444444321 258999999999999999999999999999999999999999999999999998666
Q ss_pred CCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCC
Q 048621 207 AQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMK 286 (456)
Q Consensus 207 ~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~ 286 (456)
+.+++.|+.++.+|| .++++ ....++++++|.++.+++++++.+.++... +
T Consensus 141 g~~sG~d~~~~~~g~---~~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~----~--------------------- 191 (308)
T 2x7i_A 141 GKPSGIDTQTIVSGK---PVWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA----V--------------------- 191 (308)
T ss_dssp SSCCHHHHHHHHHTS---CEEEE-TTEEEECSCCCBSSEEEEEECCC--CCSCC----C---------------------
T ss_pred CCCchHHHHHhhCCc---eEEEE-cCCCceEeccCCCceEEEEECcCCCCHHHH----H---------------------
Confidence 667778999999987 34445 334567777766889999999875433211 0
Q ss_pred cchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHH
Q 048621 287 PQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQ 366 (456)
Q Consensus 287 ~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (456)
+.++ +..... | ..++
T Consensus 192 --------~~l~-----------------------~~~~~~--------------------------~--------~~~~ 206 (308)
T 2x7i_A 192 --------HDVH-----------------------KLCEDP--------------------------Q--------YMSH 206 (308)
T ss_dssp --------C-------------------------------C--------------------------C--------HHHH
T ss_pred --------HHHH-----------------------HHHhcC--------------------------c--------hHHH
Confidence 0011 000000 0 0111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceE
Q 048621 367 RAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCA 446 (456)
Q Consensus 367 r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~ 446 (456)
+.++ ..++.+++.+|+++| ++.||++|+.+|.+++++ ++++|+++++++.+++.|++|+||||+|+|||+
T Consensus 207 -~~~~---~~~~~~~~~al~~~d-----~~~l~~~~~~~~~~~~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v 276 (308)
T 2x7i_A 207 -VKHI---GKLVLRASDVIEHHK-----FEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSM 276 (308)
T ss_dssp -HHHH---HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSE
T ss_pred -HHHH---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEE
Confidence 2221 235667888998876 999999999999999995 899999999999999999999999999999999
Q ss_pred EEEecC
Q 048621 447 VVLVKE 452 (456)
Q Consensus 447 i~L~~~ 452 (456)
++|+++
T Consensus 277 ~~l~~~ 282 (308)
T 2x7i_A 277 LLLAKD 282 (308)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999976
No 13
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=7.4e-38 Score=310.75 Aligned_cols=286 Identities=20% Similarity=0.304 Sum_probs=205.2
Q ss_pred CCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCc
Q 048621 46 APDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQW 125 (456)
Q Consensus 46 ~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w 125 (456)
.+.++++|||||+|+|||+|++|+++|++||++++++.++++ ++ ..+++.+.+.. ...+|+++.. ......+|
T Consensus 3 ~~~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~---~~-~~i~i~~~~~~-~~~~~~~~~~--~~~~~~~~ 75 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKET---QE-DEIILNLNDLN-KSLGLNLNEI--KNINPNNF 75 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC---CS-SEEEEEETTTT-EEEEEETTTG--GGCCGGGS
T ss_pred CCCEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEEC---CC-CeEEEEeCCCC-CceEEEeccC--CccCcccc
Confidence 356899999999999999999999999999999999999987 54 67888764321 1122443211 11122346
Q ss_pred chhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhh
Q 048621 126 GHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYI 205 (456)
Q Consensus 126 ~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~ 205 (456)
+++..+++.+...+...+.. ...|++|.+.|+||.++|||||||+++|++.|++++++.++++++++++|..+|+.+
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~--~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~ 152 (317)
T 1kkh_A 76 -GDFKYCLCAIKNTLDYLNIE--PKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEI 152 (317)
T ss_dssp -GGGHHHHHHHHHHHHHTTCC--CCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhccc--CCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 55532222222211112321 147999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCcchhhhhhhccCCcEEEeecCCCceeeccCC--C----CcEEEEEecCCccccccccccchhhHHHHHHHHHHHH
Q 048621 206 GAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLP--A----GGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVL 279 (456)
Q Consensus 206 ~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p--~----~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l 279 (456)
++.+|++|++++++|| +.++ ++..++++++| . ++.+++++|+.+.++.. +.+
T Consensus 153 ~g~~sg~D~~~~~~Gg---~~~~--~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~---------------~~~-- 210 (317)
T 1kkh_A 153 QGKASITDTSTITYKG---ILEI--KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAE---------------LVN-- 210 (317)
T ss_dssp SSSCCSHHHHHHHHCS---EEEE--SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHH---------------HHH--
T ss_pred cCCCchHHHHHHHhCC---eEEE--cCCCceEecCCcccccccCcEEEEEECCCcCcHHH---------------HHH--
Confidence 7778899999999998 3333 44456666543 1 25899999988543210 000
Q ss_pred hHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhh
Q 048621 280 GIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAA 359 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (456)
.+.+. .... .
T Consensus 211 ---------------------------------------~~~~~-----~~~~---~----------------------- 220 (317)
T 1kkh_A 211 ---------------------------------------EVAKI-----ENKD---E----------------------- 220 (317)
T ss_dssp ---------------------------------------HHHTC-----TTHH---H-----------------------
T ss_pred ---------------------------------------HHHHh-----hccH---H-----------------------
Confidence 00000 0000 0
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecc
Q 048621 360 KHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTG 439 (456)
Q Consensus 360 ~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltG 439 (456)
..+++. ++ ..+++..+| ++.||++|+.+|..++++ ++++|+++++++.+++.| +|+||||
T Consensus 221 ----~~~~~~-------~~--~~~a~~~~d-----~~~l~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~G-~ga~~sG 280 (317)
T 1kkh_A 221 ----IFKEID-------KV--IDEALKIKN-----KEDFGKLMTKNHELLKKL-NISTPKLDRIVDIGNRFG-FGAKLTG 280 (317)
T ss_dssp ----HHHHHH-------HH--HHHHHHCCS-----HHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHS-SEEEECS
T ss_pred ----HHHHHH-------HH--HHHHHHcCC-----HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhcC-ceeEEee
Confidence 001111 11 235566665 999999999999999985 899999999999999999 9999999
Q ss_pred cCCcceEEEEecCC
Q 048621 440 AGWGGCAVVLVKES 453 (456)
Q Consensus 440 aG~GG~~i~L~~~~ 453 (456)
+|+|||+++|++++
T Consensus 281 aG~GG~v~~l~~~~ 294 (317)
T 1kkh_A 281 AGGGGCVIILVNEE 294 (317)
T ss_dssp SSSSEEEEEECCGG
T ss_pred cCCCCEEEEEechh
Confidence 99999999999765
No 14
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=7.7e-38 Score=312.62 Aligned_cols=291 Identities=23% Similarity=0.295 Sum_probs=211.3
Q ss_pred HhCCCCCEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccccc
Q 048621 42 IFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLK 121 (456)
Q Consensus 42 ~fg~~~~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (456)
.+..++.++++|||||+|+|||+|++|+++|+++|++++++.++++ +++..+.+.+.... ++. ..
T Consensus 7 ~~~~~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~---~~~~~~~~~~~~~~-------~~~--~~--- 71 (332)
T 2hfs_A 7 PVKSKTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEIN---PGVPGLQVDDQRPA-------IPG--YI--- 71 (332)
T ss_dssp CCCSBCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEE---TTCCSEEEEECCCC-------CTT--HH---
T ss_pred cccCCCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEc---CCCCCeEEEecCcc-------ccc--cc---
Confidence 3456788999999999999999999999999999999999999886 32244555432111 110 00
Q ss_pred CCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048621 122 HHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCEC 201 (456)
Q Consensus 122 ~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~ 201 (456)
....|.+. +.+...++..+... ...|++|.+.|+||+++|||||||++||++.|++++++.++++++++++|+.+
T Consensus 72 -~~~~~~~~---~a~~~~~~~~g~~~-~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~ 146 (332)
T 2hfs_A 72 -AQKRDEQI---KAHQLVLDHLKVDL-SGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVG 146 (332)
T ss_dssp -HHHHHHHH---HHHHHHHHHTTBCC-SSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred -cccchhHH---HHHHHHHHHcCCcc-CCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 01123332 33333444445420 12699999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCcchhhhhhhccCCcEEEeecCC--CceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHH
Q 048621 202 ERYIGAQSGGMDQAISIMAKSGFAELIDFNP--IRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVL 279 (456)
Q Consensus 202 E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l 279 (456)
|+.+++.+++.|++++++|| +++.+... ..++++++|+++.+++++|+.+.++.. ++
T Consensus 147 E~~~~G~~~G~D~~~~~~Gg---~~~~~~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~------------------~~ 205 (332)
T 2hfs_A 147 EGGYHGTPSGADNTAATYGG---LILYRRQNGKSVFKPIAFQQRLYLVVVGTGINASTAK------------------VV 205 (332)
T ss_dssp GGGSSSCCCSHHHHHHHHCE---EEEEEECSSSEEEEEECCCSCEEEEEEECSCCCCHHH------------------HH
T ss_pred HHHhcCCCCcHhHHHHhcCC---eEEEecCCCCcceeeecCCCCcEEEEEECCCCccHHH------------------HH
Confidence 98666555666999999998 33443222 257788887789999999988543211 00
Q ss_pred hHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhh
Q 048621 280 GIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAA 359 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (456)
..+....... .+.+.
T Consensus 206 --------------------------------------~~~~~~~~~~---~~~~~------------------------ 220 (332)
T 2hfs_A 206 --------------------------------------NDVHKMKQQQ---PVQFK------------------------ 220 (332)
T ss_dssp --------------------------------------HHHHHHHHHC---HHHHH------------------------
T ss_pred --------------------------------------HHHHHHHHhC---HHHHH------------------------
Confidence 0000000000 00000
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecc
Q 048621 360 KHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTG 439 (456)
Q Consensus 360 ~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltG 439 (456)
.+++++.+ ++.+++++|.++| ++.||++|+++|.+++.+ ++++|+++++++.+++.|++|+||||
T Consensus 221 ---~~~~~~~~------~~~~~~~al~~~d-----~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sG 285 (332)
T 2hfs_A 221 ---RLYDNYTH------IVSQAREALQKGD-----LQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSG 285 (332)
T ss_dssp ---HHHHHHHH------HHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEES
T ss_pred ---HHHHHHHH------HHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEecc
Confidence 01223332 3456778898876 999999999999999985 79999999999999999999999999
Q ss_pred cCCcceEEEEecCC
Q 048621 440 AGWGGCAVVLVKES 453 (456)
Q Consensus 440 aG~GG~~i~L~~~~ 453 (456)
+|+|||+++|++++
T Consensus 286 aG~gg~v~~l~~~~ 299 (332)
T 2hfs_A 286 TGRGGIAVALAASS 299 (332)
T ss_dssp SCSSSEEEEEESSH
T ss_pred CCCCcEEEEEecCc
Confidence 99999999999754
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.4e-35 Score=290.61 Aligned_cols=263 Identities=18% Similarity=0.266 Sum_probs=189.1
Q ss_pred CEEEEecceecccccccccCCCeeeeeec-ccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcc
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAI-RQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWG 126 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI-~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~ 126 (456)
+++++|||||+|+|||+|++|+++|+++| ++++++.++++ + ..+++.+. ...
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~---~--~~~~i~~~----------------------~~~ 57 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPA---E--SPWRLYEE----------------------DTL 57 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEEC---S--SCCCCCCC----------------------SHH
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEEC---C--CceEEEec----------------------Ccc
Confidence 57899999999999999999999999999 99999999886 3 22222110 001
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC
Q 048621 127 HYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIG 206 (456)
Q Consensus 127 ~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~ 206 (456)
+.+. + +...+. ++. ..|++|.+.|+||.++|||||||+++|++.|+++++|.++++++++++|.++|+..+
T Consensus 58 ~~~~---~-~~~~~~--~~~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~ 128 (292)
T 2oi2_A 58 SMAV---Y-ASLEYL--NIT---EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAH 128 (292)
T ss_dssp HHHH---H-HHHHHH--TCS---CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTT
T ss_pred chhh---h-hhHHHh--ccc---CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 2221 1 112222 432 468999999999999999999999999999999999999999999999999998444
Q ss_pred CCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCC
Q 048621 207 AQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMK 286 (456)
Q Consensus 207 ~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~ 286 (456)
+.++++|++++++||. + ++ .+...+++++++.+..+++++++++.++.. +.+.+
T Consensus 129 ~~p~g~d~~~~~~gg~--~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~---------------~~~~l------- 182 (292)
T 2oi2_A 129 MNPSGLDAKTCLSDQP--I-RF-IKNVGFTELEMDLSAYLVIADTGVYGHTRE---------------AIQVV------- 182 (292)
T ss_dssp CCCCSHHHHHHTCSSC--E-EE-ETTTEEEECCCCCSCEEEEEECSSCCCHHH---------------HHHHH-------
T ss_pred CCCCchhHHHHhcCce--E-EE-EcCCCceeecCCCCCEEEEEECCCCCcHHH---------------HHHHH-------
Confidence 4455579999999983 3 33 233445666654333489999987533211 00100
Q ss_pred cchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHH
Q 048621 287 PQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQ 366 (456)
Q Consensus 287 ~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (456)
+ +.... .+
T Consensus 183 -----------~-----------------------~~~~~--------------------------------------~~ 190 (292)
T 2oi2_A 183 -----------Q-----------------------NKGKD--------------------------------------AL 190 (292)
T ss_dssp -----------H-----------------------HTGGG--------------------------------------GH
T ss_pred -----------H-----------------------HHHhh--------------------------------------hH
Confidence 0 00000 00
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcceE
Q 048621 367 RAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCA 446 (456)
Q Consensus 367 r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~~ 446 (456)
+..+.+.+ .+.+++++|.++| ++.||++|+.+|..+++. ++++|+++++++.+++.|++|+||||+|+|||+
T Consensus 191 ~~~~~~~~--~~~~~~~al~~~d-----~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v 262 (292)
T 2oi2_A 191 PFLHALGE--LTQQAEIAISQKD-----AEGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCI 262 (292)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEE
T ss_pred HHHHHHHH--HHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEE
Confidence 11111111 2446778898876 999999999999999985 899999999999999999999999999999999
Q ss_pred EEEecC
Q 048621 447 VVLVKE 452 (456)
Q Consensus 447 i~L~~~ 452 (456)
++|+++
T Consensus 263 ~~l~~~ 268 (292)
T 2oi2_A 263 IALVTN 268 (292)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999975
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.97 E-value=1.7e-30 Score=255.18 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=192.6
Q ss_pred EEEEecceecccccccccCCCeeeeeecccc-eEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 49 VYARSPGRVNLIGEHIDYEGYSVLPMAIRQD-TIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~~~l~~AI~~~-~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
++++||+|++++|+ |++++++++|.| +.+.++++ ++ ..+++..... . + ..+.|.|
T Consensus 3 i~v~aPaki~nlG~-----g~~vl~~a~d~~~~~~~~~~~---~~-~~~~i~~~~~-------~------~--~~~~~~n 58 (296)
T 1h72_C 3 VRVKAPCTSANLGV-----GFDVFGLCLKEPYDVIEVEAI---DD-KEIIIEVDDK-------N------I--PTDPDKN 58 (296)
T ss_dssp EEEEEEEEEECTGG-----GTTTEEEEEEEEEEEEEEEEE---SS-SSEEEEESCT-------T------S--CCCTTTS
T ss_pred EEEEEEeehhcccc-----chhhhHHhcccccEEEEEEec---CC-CeEEEEEcCC-------c------C--CCCCccC
Confidence 68899999999996 455999999995 55666665 33 4566653210 0 1 1122778
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
++..+++.+ ++..+. ..|++|.+.++||+++|||||||+++|++.|+++++|.++++++++++|.++|...++
T Consensus 59 ~v~~a~~~~---~~~~g~----~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 131 (296)
T 1h72_C 59 VAGIVAKKM---IDDFNI----GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG 131 (296)
T ss_dssp HHHHHHHHH---HHHTTC----CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHH---HHHhCC----CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence 886443333 233354 3699999999999999999999999999999999999999999999999999986666
Q ss_pred CCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCCCc
Q 048621 208 QSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKP 287 (456)
Q Consensus 208 ~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~~~ 287 (456)
.+++.|..++++||. +++.+..+..++++++|+++.+++++|+++.++. .+.
T Consensus 132 ~~~~ddv~~~~~gg~--~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~~T~---------------~~~----------- 183 (296)
T 1h72_C 132 AKHADNVAPAIFGGF--TMVTNYEPLEVLHIPIDFKLDILIAIPNISINTK---------------EAR----------- 183 (296)
T ss_dssp SCCCTTHHHHHHCSE--EEEEETTTTEEEEECCCSCCCEEEECCSSCCCHH---------------HHH-----------
T ss_pred CCCccchHHHHhCCE--EEEEeCCceEEEEEcCCCCeEEEEEeCCCCccHH---------------HHH-----------
Confidence 666666677899983 4444444455788888878999999998742211 000
Q ss_pred chhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHHHH
Q 048621 288 QEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQR 367 (456)
Q Consensus 288 ~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (456)
+.+... + +
T Consensus 184 ----------------------------------~~l~~~-~-------------------------------------~ 191 (296)
T 1h72_C 184 ----------------------------------EILPKA-V-------------------------------------G 191 (296)
T ss_dssp ----------------------------------HTSCSC-C-------------------------------------C
T ss_pred ----------------------------------HhccCc-C-------------------------------------c
Confidence 000000 0 0
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHH--HHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCcce
Q 048621 368 AAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLM--NDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGC 445 (456)
Q Consensus 368 ~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm--~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~GG~ 445 (456)
..+.+.+..|+.++..+|.++| ++.||++| |..|+.++. +++|+++++++.+++. ++|+||||+|+ |
T Consensus 192 ~~~~~~~~~~~~~~~~al~~~d-----~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG~--~ 260 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYALYNKD-----KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSGP--S 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTSS--C
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCCh--h
Confidence 1133344456667889999886 99999999 777888874 6899999999999998 89999999996 8
Q ss_pred EEEEecCC
Q 048621 446 AVVLVKES 453 (456)
Q Consensus 446 ~i~L~~~~ 453 (456)
+++|++++
T Consensus 261 v~~l~~~~ 268 (296)
T 1h72_C 261 IIAFPKEE 268 (296)
T ss_dssp EEEEECGG
T ss_pred eEEEecHH
Confidence 99988543
No 17
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.94 E-value=4.2e-26 Score=221.37 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=128.5
Q ss_pred CCCEEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccc
Q 048621 46 APDVYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDL 120 (456)
Q Consensus 46 ~~~~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~ 120 (456)
++++.++|||||+| .|+|.| |++..++.++|++++++ +++. ..+++.. .. ++
T Consensus 2 ~~m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~~------~~i~i~~--~~-------~~------- 58 (271)
T 2v8p_A 2 SHMIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIRE------GVLRVET--NI-------GI------- 58 (271)
T ss_dssp CCCEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEEE------SSCEEEE--SS-------CC-------
T ss_pred CceEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEeC------CeEEEEe--CC-------CC-------
Confidence 46789999999999 799999 56678999999999999 8763 2355543 10 11
Q ss_pred cCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048621 121 KHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCE 200 (456)
Q Consensus 121 ~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~ 200 (456)
..|.|++..+++.+ ++..+. ..|++|.+.|+||+++|||||||.++|++.|++++++.++++++++++|.+
T Consensus 59 --~~~~nlv~~a~~~~---~~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~ 129 (271)
T 2v8p_A 59 --PQEENLVYKGLREF---ERITGI----EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGS 129 (271)
T ss_dssp --CTTTCHHHHHHHHH---HHHHCC----CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHH---HHHhCC----CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 23667875333333 233354 368999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCc
Q 048621 201 CERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 201 ~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~ 254 (456)
+| .|..++++|| +.+.......++++++|.++.+++++|+.+
T Consensus 130 ~e---------~dv~~~~~gg---~~~~~g~g~~~~~l~~~~~~~~vl~~p~~~ 171 (271)
T 2v8p_A 130 IS---------ADAPFFLLGK---SAIGRGKGEVLEPVETEISGKITLVIPQVS 171 (271)
T ss_dssp HC---------TTTGGGGTCS---EEEEETTTTEEEECCCCCCSEEEEEECSSC
T ss_pred hC---------CCHHHHhcCC---eEEEEEcCCEEEEccCCCCcEEEEEeCCCC
Confidence 98 3999999998 444444445577777554799999999874
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.94 E-value=7.6e-25 Score=216.02 Aligned_cols=259 Identities=16% Similarity=0.165 Sum_probs=182.7
Q ss_pred CEEEEecceecc----cccccccCCC-eeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccC
Q 048621 48 DVYARSPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKH 122 (456)
Q Consensus 48 ~~~~~APgri~L----~GEh~d~~G~-~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (456)
.+.++||+|||| .|.+.|.|+. ..+.++|+++.++.+++. ++ ..+++..... . .+| .
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~---~~-~~i~~~g~~~----~--~~p----~---- 66 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNA---DV-LSLELVGEGA----D--QLP----T---- 66 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEEC---SS-CEEEEESTTG----G--GSC----C----
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEEC---CC-CEEEEeCCCc----c--CCC----C----
Confidence 588999999999 8989885554 567799999999999987 43 5566643210 0 111 1
Q ss_pred CCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048621 123 HQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECE 202 (456)
Q Consensus 123 ~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E 202 (456)
+..|++. +.+...++..+. ..|++|.+.++||+++|||||||.++|++.|++++++.++++++++++|.++|
T Consensus 67 -~~~Nlv~---~A~~~l~~~~g~----~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~ 138 (306)
T 3pyf_A 67 -DERNLAW---QAAELMAEHVGR----APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG 138 (306)
T ss_dssp -STTSHHH---HHHHHHHHHTTC----CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred -CCccHHH---HHHHHHHHHhCC----CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 1235664 333333344454 36999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHH
Q 048621 203 RYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIK 282 (456)
Q Consensus 203 ~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~ 282 (456)
.|..++++|| ..+.......+++++.|+++.+++++|+++.+|.. +.+.+...
T Consensus 139 ---------~Dv~~~~~Gg---~~~~~g~ge~~~~l~~~~~~~~vl~~P~~~vsT~~---------------a~~~l~~~ 191 (306)
T 3pyf_A 139 ---------SDVPFALHGG---TALGTGRGEELATVLSRNTFHWVLAFADSGLLTSA---------------VYNELDRL 191 (306)
T ss_dssp ---------TTHHHHHHBS---EEEECSSSSCCEEECCSSCEEEEEEECSSCCCHHH---------------HHHHHHHH
T ss_pred ---------CCCceeecCc---eEEEEeeCCeEEEccCCCCcEEEEEECCCCCcHHH---------------HHHhhhhh
Confidence 5999999998 44455455567888877789999999987533211 00000000
Q ss_pred hCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhh
Q 048621 283 LGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHY 362 (456)
Q Consensus 283 ~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (456)
+ . . .++ +
T Consensus 192 ---------------~-----------------------~---~----------------~~~--------~-------- 198 (306)
T 3pyf_A 192 ---------------R-----------------------E---V----------------GDP--------P-------- 198 (306)
T ss_dssp ---------------H-----------------------H---H----------------SCC--------C--------
T ss_pred ---------------c-----------------------c---c----------------ccc--------c--------
Confidence 0 0 0 000 0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCC
Q 048621 363 KLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGW 442 (456)
Q Consensus 363 ~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~ 442 (456)
...++..+..+|.++| ++.|+++|....+..+. ..+|+++++++.+++.|++|++|||+|
T Consensus 199 -----------~~~~~~~~~~al~~~d-----~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG- 258 (306)
T 3pyf_A 199 -----------RLGEPGPVLAALAAGD-----PDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG- 258 (306)
T ss_dssp -----------CCCCHHHHHHHHHHTC-----HHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS-
T ss_pred -----------cccCHHHHHHHHHhCC-----HHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc-
Confidence 0002334567787775 99999988422222221 248999999999999999999999998
Q ss_pred cceEEEEecCC
Q 048621 443 GGCAVVLVKES 453 (456)
Q Consensus 443 GG~~i~L~~~~ 453 (456)
+|+++|++++
T Consensus 259 -ptvfal~~~~ 268 (306)
T 3pyf_A 259 -PTCAFLCTSA 268 (306)
T ss_dssp -SEEEEEESSH
T ss_pred -hhheEEeCCH
Confidence 8999999753
No 19
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.93 E-value=2.9e-24 Score=211.18 Aligned_cols=252 Identities=16% Similarity=0.176 Sum_probs=172.5
Q ss_pred CEEEEecceecccccccccCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCCCcch
Q 048621 48 DVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGH 127 (456)
Q Consensus 48 ~~~~~APgri~L~GEh~d~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~w~~ 127 (456)
++++++|++..++| .|+++|.+||++|.++.+++. . ..+++...... .++ .+ . .|
T Consensus 2 m~~v~vPat~anlG-----~Gfd~lg~al~l~d~v~~~~~---~--~~~~i~~~~~~------~~p----~~--~---~n 56 (298)
T 3hul_A 2 SLRIRVPATTANLG-----PGFDSCGLALTLYLTLDIGAE---A--DSWYIEHNIGG------GIP----HD--E---TN 56 (298)
T ss_dssp CEEEEEEEEEESCT-----TCTTTEEEEEEEEEEEEEEEE---C--SSCEEECCCCT------TCC----SS--T---TS
T ss_pred eEEEEEeeceeccC-----CCcchhhhhcccceEEEEEEc---C--CceEEEecCcc------cCC----CC--C---Cc
Confidence 47899999999999 799999999999999999754 2 34555432110 011 11 1 13
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 048621 128 YFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGA 207 (456)
Q Consensus 128 ~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~ 207 (456)
.+. +.+...+. . ..|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|..+|
T Consensus 57 lv~---~a~~~~~~---~----~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e----- 121 (298)
T 3hul_A 57 VII---ETALNLAP---N----LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE----- 121 (298)
T ss_dssp HHH---HHHHHHCT---T----CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----
T ss_pred HHH---HHHHHHhc---c----CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc-----
Confidence 332 33322221 1 46999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhccCCcEEEeecCC--CceeeccCCCCcEEEEEecCCccccccccccchhhHHHHHHHHHHHHhHHhCC
Q 048621 208 QSGGMDQAISIMAKSGFAELIDFNP--IRATDVQLPAGGTFVIAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGM 285 (456)
Q Consensus 208 ~~g~~D~~~s~~Gg~~~~~~i~~~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~~a~~~l~~~~~~ 285 (456)
++..|...+++|| +.+..... ..+.++++| ++.+++++++.+.+|.. +.+
T Consensus 122 -g~~ddv~~~~~GG---~~~~~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~---------------a~~-------- 173 (298)
T 3hul_A 122 -GHPDNVAPAVLGN---WVVGAKLDGEDFYVRHLFP-DCALIAFIPKAELLTSE---------------SRG-------- 173 (298)
T ss_dssp -SCSTTHHHHHHCS---EEEEEEETTEEEEEEECCC--CEEEEEECCCCCC-----------------------------
T ss_pred -CCcccCcccccCC---EEEEEeCCCcEEEEEcCCC-CeEEEEEECCCCCCcHH---------------HHH--------
Confidence 2335666788998 33333333 334466766 59999999887432211 000
Q ss_pred CcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhhhhhhhhHHH
Q 048621 286 KPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLH 365 (456)
Q Consensus 286 ~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (456)
.|+ .. + + +
T Consensus 174 ----------~l~---------------------------~~-~------------------------~----------~ 181 (298)
T 3hul_A 174 ----------VLP---------------------------DT-L------------------------P----------F 181 (298)
T ss_dssp ------------C---------------------------CE-E------------------------E----------H
T ss_pred ----------HHh---------------------------hh-c------------------------c----------H
Confidence 000 00 0 0 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHH--hHHhhhhhcCCCcHHHHHHHHHHHhCCCceeeecccCCc
Q 048621 366 QRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMND--SHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWG 443 (456)
Q Consensus 366 ~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~--sh~~lr~l~~vS~peld~lv~~a~~~GalGaKltGaG~G 443 (456)
.. .+.+..++..++.+|.++| ++.||++|+. .|+.++.. .+|+++++++.+++.|++|++|||+|
T Consensus 182 ~~---~~~~~~~~~~~~~al~~~d-----~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG-- 248 (298)
T 3hul_A 182 KE---AVQASSIANVMIAAILRND-----MTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG-- 248 (298)
T ss_dssp HH---HHHHHHHHHHHHHHHTTTC-----HHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--
T ss_pred HH---HHHHHHHHHHHHHHHHcCC-----HHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--
Confidence 00 0111234556788898876 9999999973 47777754 38999999999999999999999998
Q ss_pred ceEEEEecC
Q 048621 444 GCAVVLVKE 452 (456)
Q Consensus 444 G~~i~L~~~ 452 (456)
+|+++|+++
T Consensus 249 ptv~al~~~ 257 (298)
T 3hul_A 249 PTVLVFAPR 257 (298)
T ss_dssp SCEEEEECG
T ss_pred hheEEEECH
Confidence 688999874
No 20
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.92 E-value=7.9e-24 Score=209.91 Aligned_cols=265 Identities=13% Similarity=0.085 Sum_probs=173.9
Q ss_pred CCEEEEecceecccccccccCCC------eeeeeec-ccceEEEEEe-cccCCCCCeEEEEecCCCCCceeeeCCCCccc
Q 048621 47 PDVYARSPGRVNLIGEHIDYEGY------SVLPMAI-RQDTIVAIRK-HVSGETEKVLKIANVSDKYSLCTYPAEPDQEL 118 (456)
Q Consensus 47 ~~~~~~APgri~L~GEh~d~~G~------~~l~~AI-~~~~~v~v~~-~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~ 118 (456)
.+++++||++|+|+|+|.++.++ ..+++++ ++++.+.++. . .+...+++. ++.
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~~~v~~~~---~~~~~~~~~------------~~g---- 67 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLP---DTATSDQFY------------ING---- 67 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECC---TTCCSCEEE------------ETT----
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccceEEEEEEc---CCCCeEEEE------------ECC----
Confidence 45789999999999999998654 5788888 4787777776 3 110112221 110
Q ss_pred cccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 048621 119 DLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLT 198 (456)
Q Consensus 119 ~~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la 198 (456)
......|.|++. .++..+.+.+ ..|++|.+.++||.++|||||||.+||++.|+++++|.++++++++++|
T Consensus 68 ~~~~~~~~n~v~----~~~~~~~~~~-----~~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la 138 (317)
T 2gs8_A 68 ILQNDEEHTKIS----AIIDQFRQPG-----QAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKA 138 (317)
T ss_dssp EECCHHHHHHHH----HHHTTTCCTT-----CCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CccccchHHHHH----HHHHHHHHhc-----CCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 001124777763 4444443322 1689999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEE--EecCCccccccccccchhhHHHHHHHHH
Q 048621 199 CECERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVI--AHSLAESLKAVTAATNYNNRVVECRLAA 276 (456)
Q Consensus 199 ~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll--~~s~~~~~~~~~~~~~yn~R~~e~~~a~ 276 (456)
..++ .+...+++|| +.....++......++|.++.+++ ++++.. .......|+..
T Consensus 139 ~~~~---------G~~~~~~~GG---~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~---~~~tt~~~~~~-------- 195 (317)
T 2gs8_A 139 KFAS---------GSSSRSFFGP---VAAWDKDSGAIYKVETDLKMAMIMLVLNAAKK---PISSREGMKLC-------- 195 (317)
T ss_dssp HHHH---------GGGGGGGSCS---EEEECTTTCCEEECCCCCCEEEEEEECCCSSC---CSCHHHHHHHH--------
T ss_pred Hhhc---------chhHhhhcCC---hheEeeCCCceeEEEccccccEEEEEEECCCc---CcccHHHHHHH--------
Confidence 8775 1445688998 333333333334445555666433 355331 11111111100
Q ss_pred HHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCchhhh
Q 048621 277 IVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVL 356 (456)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
++.. .
T Consensus 196 -----------------------------------------------~~~~-~--------------------------- 200 (317)
T 2gs8_A 196 -----------------------------------------------RDTS-T--------------------------- 200 (317)
T ss_dssp -----------------------------------------------HHHC-T---------------------------
T ss_pred -----------------------------------------------hhcC-H---------------------------
Confidence 0000 0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCCCcHH-------HHHHHHH---
Q 048621 357 NAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPE-------LEELVTV--- 426 (456)
Q Consensus 357 ~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~vS~pe-------ld~lv~~--- 426 (456)
...+++.++ ..|+.+++.+|.++| ++.||++|+++|..|.+.+..++|+ +.++.+.
T Consensus 201 ------~~~~~~~~~---~~~~~~~~~al~~~d-----~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~ 266 (317)
T 2gs8_A 201 ------TFDQWVEQS---AIDYQHMLTYLKTNN-----FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKE 266 (317)
T ss_dssp ------THHHHHHHH---HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHH---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHH
Confidence 011122222 347778899999886 9999999999999999876555444 4566654
Q ss_pred HHhCCCceeeecccCCcceEEEEecCC
Q 048621 427 CRDNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 427 a~~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
+++.|+.++-++|+| +|+++|++++
T Consensus 267 ~~~~G~~~~~~SGaG--ptv~~l~~~~ 291 (317)
T 2gs8_A 267 LRQEGFACYFTMDAG--PNVKVLCLEK 291 (317)
T ss_dssp HHHTTCCEEEECCSS--SCEEEEEEGG
T ss_pred HHhcCCcEEEEecCC--CeEEEEEcHH
Confidence 445899999999987 8999999765
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.91 E-value=1.6e-23 Score=204.52 Aligned_cols=169 Identities=16% Similarity=0.225 Sum_probs=127.9
Q ss_pred EEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.++|||||+| .|+|+| |+...++.++|++|+++.++++ ++ ..+++.+... . ++ .
T Consensus 3 ~~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~---~~-~~i~i~~~~~-------~------~~-~-- 62 (283)
T 2ww4_A 3 TQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELR---DD-GDIRLLTPVE-------G------VE-H-- 62 (283)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEE---SS-SCEEECSCBT-------T------BC-G--
T ss_pred ccccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEEC---CC-CcEEEEeCCC-------C------CC-C--
Confidence 34679999999 799999 5556799999999999999987 44 5666643210 0 11 1
Q ss_pred CcchhhhhHHHHHHHHHHHc---CCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048621 124 QWGHYFICGYKGFYEYVKAK---GLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCE 200 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~---g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~ 200 (456)
..|++..+++.+.+.+... |. ..|++|.+.|+||+++|||||||.++|++.|++++++.++++++++++|.+
T Consensus 63 -~~nlv~~a~~~~~~~~~~~~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~ 137 (283)
T 2ww4_A 63 -EDNLIVRAARLLMKTAADSGRLPT----GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLT 137 (283)
T ss_dssp -GGSHHHHHHHHHHHHHHHTTCSCT----TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred -cccHHHHHHHHHHHHhhhhcccCC----CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 1367754444333322110 43 379999999999999999999999999999999999999999999999998
Q ss_pred HhhhhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCcc
Q 048621 201 CERYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAES 255 (456)
Q Consensus 201 ~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~~ 255 (456)
+| .|..++++|| +.+.......++++++| ++.+++++|+++.
T Consensus 138 ~e---------~dv~~~~~gg---~~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~ 179 (283)
T 2ww4_A 138 LG---------ADVPVFVRGH---AAFAEGVGEILTPVDPP-EKWYLVAHPGVSI 179 (283)
T ss_dssp TC---------TTHHHHHHTB---CEEEETTTTEEEECCCC-CCEEEEECCSCCC
T ss_pred hC---------CCHHHhhcCC---eEEEEecCccceEcCCC-CcEEEEEeCCCCC
Confidence 88 3999999998 34455555556777776 7899999998753
No 22
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.90 E-value=3.7e-22 Score=198.90 Aligned_cols=266 Identities=16% Similarity=0.104 Sum_probs=171.3
Q ss_pred EEEEecceecccccccccCCC------eeeeeeccc-ceEEEEEecccCCC--CCeEEEEecCCCCCceeeeCCCCcccc
Q 048621 49 VYARSPGRVNLIGEHIDYEGY------SVLPMAIRQ-DTIVAIRKHVSGET--EKVLKIANVSDKYSLCTYPAEPDQELD 119 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~G~------~~l~~AI~~-~~~v~v~~~~~~~~--~~~i~i~s~~~~~~~~~~~l~~~~~~~ 119 (456)
.+++||++|+|+|+|.++.++ +.|+++++. ++.+.++.. .+ ...+.+ +.. ..
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~~~~~~~v~~~---~~~~~~~~~i--------------~g~-~~- 70 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDRFYTETKVTFD---PDFTEDCLIL--------------NGN-EV- 70 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEE---TTCSSCEEEE--------------TTE-EC-
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEecCCCCeeEEEEc---CCCCccEEEE--------------CCc-cC-
Confidence 588999999999999999765 467777763 666666543 21 012222 100 01
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048621 120 LKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTC 199 (456)
Q Consensus 120 ~~~~~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~ 199 (456)
..+|.|++..+++.+ .+..+. ..|++|.+.++||.++|||||||.++|++.|+++++++++++++++++|.
T Consensus 71 --~~~~~n~v~~~~~~~---~~~~~~----~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~ 141 (332)
T 3qt5_A 71 --NAKEKEKIQNYMNIV---RDLAGN----RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLAR 141 (332)
T ss_dssp --CHHHHHHHHHHHHHH---HHHHTC----CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHH---HHhcCC----CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 123567775333332 223343 36899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCCcchhhhhhhccCCcEEEeecCC---Cceeecc---CCCCcEEEEEecCCccccccccccchhhHHHHHH
Q 048621 200 ECERYIGAQSGGMDQAISIMAKSGFAELIDFNP---IRATDVQ---LPAGGTFVIAHSLAESLKAVTAATNYNNRVVECR 273 (456)
Q Consensus 200 ~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~---~~~~~~~---~p~~~~~ll~~s~~~~~~~~~~~~~yn~R~~e~~ 273 (456)
++| .|...+++||. +++..... ....+++ .++++.++++.+.....+.++ |
T Consensus 142 ~~~---------g~~~~~~~GG~--~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~----- 198 (332)
T 3qt5_A 142 RGS---------GSASRSIFGGF--AEWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------R----- 198 (332)
T ss_dssp HHC---------GGGGGGGSCSE--EEEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------H-----
T ss_pred Hhc---------CCchhhhcCCe--EEEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------H-----
Confidence 875 16667889983 22222212 1235554 334788887776653221111 0
Q ss_pred HHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhhhhhhccCCch
Q 048621 274 LAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSL 353 (456)
Q Consensus 274 ~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (456)
.+. + +.++.. .
T Consensus 199 ~~~---------------------~-----------------------~~~~~s-~------------------------ 209 (332)
T 3qt5_A 199 SGM---------------------S-----------------------LTRDTS-R------------------------ 209 (332)
T ss_dssp HHH---------------------H-----------------------HHHHHC-T------------------------
T ss_pred HHH---------------------H-----------------------HhhhcC-h------------------------
Confidence 000 0 000000 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcC-------CCcHHHHHHHHH
Q 048621 354 DVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYE-------CSCPELEELVTV 426 (456)
Q Consensus 354 ~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~-------vS~peld~lv~~ 426 (456)
...+++.+ -..|+..++.+|.++| ++.||++|..+|..|.+.+- .-.|+++++++.
T Consensus 210 ---------~~~~~v~~---~~~~~~~l~~Al~~~D-----~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~ 272 (332)
T 3qt5_A 210 ---------FYQYWLDH---VDEDLNEAKEAVKNQD-----FQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAI 272 (332)
T ss_dssp ---------THHHHHHH---HHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHH
T ss_pred ---------hHHHHHHH---HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHH
Confidence 00011111 1126677889999886 99999999866555554431 136999999998
Q ss_pred HH---hCCCceeeecccCCcceEEEEecCC
Q 048621 427 CR---DNGALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 427 a~---~~GalGaKltGaG~GG~~i~L~~~~ 453 (456)
++ +.|++|+.++|+| +|+++|++++
T Consensus 273 ~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~~ 300 (332)
T 3qt5_A 273 VEQCRKANLPCYFTMDAG--PNVKVLVEKK 300 (332)
T ss_dssp HHHHHHTTCCEEEECCSS--SCEEEEEEHH
T ss_pred HHHHHhCCCcEEEEeCCC--CcEEEEECHH
Confidence 85 7899999999775 8999998753
No 23
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.89 E-value=7.7e-23 Score=198.75 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=117.1
Q ss_pred EEEEecceecc----cccccc-cCCCeeeeeecccceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCccccccCC
Q 048621 49 VYARSPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHH 123 (456)
Q Consensus 49 ~~~~APgri~L----~GEh~d-~~G~~~l~~AI~~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (456)
+.+ |||||+| .|+|.| |+...++.++|++++++.+++. . ..+.... . ++
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~---~--~~i~~~~----------~------~~---- 55 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV---S--SGLHFQG----------P------YG---- 55 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE---S--SCEEEES----------T------TG----
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC---c--EEEEEcC----------C------CC----
Confidence 566 9999999 589888 5566899999999999998761 1 2222211 0 11
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 048621 124 QWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER 203 (456)
Q Consensus 124 ~w~~~~~~~i~~v~~~l~~~g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 203 (456)
..|++..+++. .++..+. ..|++|.+.++||+++|||||||.++|++.|++++++.++ +++++|.++|
T Consensus 56 -~~n~v~~a~~~---~~~~~g~----~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g- 123 (275)
T 1uek_A 56 -RENLAYRAASL---YLEAAGQ----PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG- 123 (275)
T ss_dssp -GGSHHHHHHHH---HHHHTTC----CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC-
T ss_pred -CccHHHHHHHH---HHHHhCC----CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC-
Confidence 12566432222 2333343 4699999999999999999999999999999999999988 8999998886
Q ss_pred hhCCCCCcchhhhhhhccCCcEEEeecCCCceeeccCCCCcEEEEEecCCc
Q 048621 204 YIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAE 254 (456)
Q Consensus 204 ~~~~~~g~~D~~~s~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~ll~~s~~~ 254 (456)
.|..++++|| +.+.......+++++ ++++.+++++|+.+
T Consensus 124 --------~dv~~~~~Gg---~~~~~g~g~~~~~l~-~~~~~~vl~~p~~~ 162 (275)
T 1uek_A 124 --------ADVPFFLLGR---GAEARGVGERLKPLA-LPPVPAVVFFPGLR 162 (275)
T ss_dssp --------TTHHHHHHCS---EEEEETTTTEEEEEC-CCCEEEEEEECCCC
T ss_pred --------CChHHHhcCC---eEEEEccCceeEEcc-CCCcEEEEEeCCCC
Confidence 3999999998 444554555677777 55899999999864
No 24
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.82 E-value=5.8e-18 Score=173.57 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=167.7
Q ss_pred EEEEecceecccccccccC------CCeeeeeecc---cceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCcccc
Q 048621 49 VYARSPGRVNLIGEHIDYE------GYSVLPMAIR---QDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELD 119 (456)
Q Consensus 49 ~~~~APgri~L~GEh~d~~------G~~~l~~AI~---~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~ 119 (456)
++++||++|.|++.|..+. +...|+++++ +|+.+.++.. .+...+++ .++.. ..+
T Consensus 26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~---~~~~~~~i------------~i~G~-~~~ 89 (416)
T 1fi4_A 26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATA---PEFERDTL------------WLNGE-PHS 89 (416)
T ss_dssp EEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEEC---TTCCSCBC------------TTTCC-BSS
T ss_pred EEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEc---CCCCccEE------------EECCc-ccc
Confidence 7899999999999888754 4468999998 8988888865 21011111 11100 001
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHc---C--CCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHH
Q 048621 120 LKHHQWGHYFICGYKGFYEYVKAK---G--LDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEI 194 (456)
Q Consensus 120 ~~~~~w~~~~~~~i~~v~~~l~~~---g--~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el 194 (456)
. ..+++..+++.+.+.+... + .+.....|++|.+.++||.++|||||||.+||++.|+++++|++++++++
T Consensus 90 -~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eL 165 (416)
T 1fi4_A 90 -I---DNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEI 165 (416)
T ss_dssp -S---SSSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHH
T ss_pred -c---cchHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 1 1245543333333322210 0 00000368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeecC------CCceeeccC---CCCcE--EEEEecCCcccccccccc
Q 048621 195 AQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDFN------PIRATDVQL---PAGGT--FVIAHSLAESLKAVTAAT 263 (456)
Q Consensus 195 ~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~~------~~~~~~~~~---p~~~~--~ll~~s~~~~~~~~~~~~ 263 (456)
+++|..++ .+...+++|| +...... .....+++. .+++. +++.+++.. ......
T Consensus 166 a~lA~~g~---------Gs~~~sl~GG---~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~---~~sst~ 230 (416)
T 1fi4_A 166 SRIARKGS---------GSACRSLFGG---YVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKK---DVSSTQ 230 (416)
T ss_dssp HHHHHHHH---------GGGGGGGSSS---EEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSC---CCCHHH
T ss_pred HHHHhccC---------CchheEeeCC---cEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCC---CcCCHH
Confidence 99998765 1556789998 3333221 122344432 13566 444444321 111101
Q ss_pred chhhHHHHHHHHHHHHhHHhCCCcchhhcccccccchhhhhhhhcCCCCCCchhHHHHhhhccCCCCHHHHHHHHhhhhh
Q 048621 264 NYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLS 343 (456)
Q Consensus 264 ~yn~R~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
.|+.++ ...
T Consensus 231 ~~~~~~-------------------------------------------------------~~~---------------- 239 (416)
T 1fi4_A 231 GMQLTV-------------------------------------------------------ATS---------------- 239 (416)
T ss_dssp HHHHHH-------------------------------------------------------HHC----------------
T ss_pred HHHHHh-------------------------------------------------------hcC----------------
Confidence 111000 000
Q ss_pred hhhhccCCchhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhHHhhhhhcCC-------C
Q 048621 344 SIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYEC-------S 416 (456)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~~lr~l~~v-------S 416 (456)
. ...+++.++. ..|+..++.+|.++| ++.||++|.++|..+.+.+-. -
T Consensus 240 ~------------------~~~~~~~~i~--~~~~~~l~~AL~~gD-----~~~~g~~~~~d~~~lh~~~~~~~p~~~~l 294 (416)
T 1fi4_A 240 E------------------LFKERIEHVV--PKRFEVMRKAIVEKD-----FATFAKETMMDSNSFHATCLDSFPPIFYM 294 (416)
T ss_dssp S------------------HHHHHHHTHH--HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCC
T ss_pred H------------------hHHHHHHHHH--HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 0 0011222211 236777889999886 999999999988888775432 2
Q ss_pred cHHHHHHHHHHHh----CC-CceeeecccCCcceEEEEecCC
Q 048621 417 CPELEELVTVCRD----NG-ALGARLTGAGWGGCAVVLVKES 453 (456)
Q Consensus 417 ~peld~lv~~a~~----~G-alGaKltGaG~GG~~i~L~~~~ 453 (456)
.|....+++.+.+ .| +.++-++||| +++++|++++
T Consensus 295 ~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~ 334 (416)
T 1fi4_A 295 NDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAE 334 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGG
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHH
Confidence 4466777766543 38 7788899987 7888888754
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.68 E-value=1.4e-14 Score=146.74 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=90.4
Q ss_pred EEEecceecc-----cccccc-c----CCCeeeeeecc---cceEEEEEecccCCCCCeEEEEecCCCCCceeeeCCCCc
Q 048621 50 YARSPGRVNL-----IGEHID-Y----EGYSVLPMAIR---QDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQ 116 (456)
Q Consensus 50 ~~~APgri~L-----~GEh~d-~----~G~~~l~~AI~---~~~~v~v~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~ 116 (456)
.++||+++|+ .|..-| + ++..+|++|++ +|+++.++.. ++...+++.... .. .
T Consensus 5 ~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~---~~~~~~~i~i~g-----~~--~---- 70 (380)
T 2hke_A 5 CVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELR---DDIETDTLRLNG-----TE--V---- 70 (380)
T ss_dssp EEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEE---SSCSSCEEEETT-----EE--E----
T ss_pred cEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEEC---CCCCccEEEECC-----cc--c----
Confidence 3455555554 466544 4 67889999999 8999998875 210122332111 00 0
Q ss_pred cccccCCCcchhhhhHHHHHHHHHHHc-CCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHH
Q 048621 117 ELDLKHHQWGHYFICGYKGFYEYVKAK-GLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIA 195 (456)
Q Consensus 117 ~~~~~~~~w~~~~~~~i~~v~~~l~~~-g~~~~~~~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~ 195 (456)
+.. -.+.+ ..++..+++. +.. ....|++|.+.++||.++|||||||.+||++.|+++++|++ ++++
T Consensus 71 --~~~---~~~~v----~~~~~~~~~~~~~~-~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~ 137 (380)
T 2hke_A 71 --DVG---KTPRV----QSMLLHLRSTCPEE-LKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVS 137 (380)
T ss_dssp --CGG---GCHHH----HHHHHHHHTSSCHH-HHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHH
T ss_pred --Cch---hHHHH----HHHHHHHHHHhccc-CCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHH
Confidence 000 11333 3444555443 210 00368999999999999999999999999999999999977 8899
Q ss_pred HHHHHHhhhhCCCCCcchhhhhhhcc
Q 048621 196 QLTCECERYIGAQSGGMDQAISIMAK 221 (456)
Q Consensus 196 ~la~~~E~~~~~~~g~~D~~~s~~Gg 221 (456)
++|...+ .|...++|||
T Consensus 138 ~lA~~g~---------Gsva~s~~GG 154 (380)
T 2hke_A 138 MLARLGS---------GSACRSAFGG 154 (380)
T ss_dssp HHHHHHC---------GGGGGGGSSS
T ss_pred HHHhhcC---------cceeeehhCC
Confidence 9987654 1567889999
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.65 E-value=1.6e-14 Score=142.26 Aligned_cols=63 Identities=30% Similarity=0.195 Sum_probs=56.8
Q ss_pred CCceEEEEEecCCCCCCCCchHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHhhhhCCCCCcchhhhhhhcc
Q 048621 150 PVGLDILVDGIVPTGSGLSSSAAFVCSST----IALMAAFGVEV-PKKEIAQLTCECERYIGAQSGGMDQAISIMAK 221 (456)
Q Consensus 150 ~~g~~i~i~S~IP~g~GLGSSAA~~vA~~----~al~~l~g~~l-s~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg 221 (456)
..|++|.+.++||.++|||||||..||++ .|+++++|+++ +++++.++|..++ .+...|+|||
T Consensus 90 ~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs---------Gsaa~si~GG 157 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS---------GSSCRSFYAP 157 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC---------GGGGGGGSCS
T ss_pred CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---------CCcchhhhCC
Confidence 47999999999999999999999999999 99999999999 9999999997554 1456699999
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.50 E-value=1.8e-12 Score=130.61 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCcchhhhhhhccCCcEEEeec
Q 048621 151 VGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGFAELIDF 230 (456)
Q Consensus 151 ~g~~i~i~S~IP~g~GLGSSAA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~~~~g~~D~~~s~~Gg~~~~~~i~~ 230 (456)
.|++|.+.++||.++|||||||.+||++.|+++++++ ++++.++|..++ .+...|+|||. +++..+
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---------Gs~~~s~~GG~--v~w~~~ 187 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---------GSACRSLYGGF--VEWQMG 187 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---------GGGGGGGSSSE--EEECCC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---------CCcchHhhCCE--EEEEec
Confidence 5899999999999999999999999999999999997 467888887664 24567899992 332222
Q ss_pred C---C--CceeeccCC---CCcEEEEEec
Q 048621 231 N---P--IRATDVQLP---AGGTFVIAHS 251 (456)
Q Consensus 231 ~---~--~~~~~~~~p---~~~~~ll~~s 251 (456)
. + ....+++.+ +++.++++..
T Consensus 188 ~~~d~~ds~a~~i~~~~~wp~L~ivvlv~ 216 (414)
T 3f0n_A 188 EQADGKDSIARQIAPEWHWPQLRILILVV 216 (414)
T ss_dssp SCTTCTTCCEEEEECTTSCTTEEEEEEEE
T ss_pred cCCCCCceEEEEcccccCCCCceEEEEEe
Confidence 1 1 223444421 3677776664
Done!