RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 048621
(456 letters)
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 152 bits (385), Expect = 2e-44
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 10/219 (4%)
Query: 24 QLEEAQLRFGNLKSKFIQIFGHAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVA 83
+ + + F + FG P++ +PGRVNLIGEH DY VLPMA+ T++
Sbjct: 4 RQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLV 63
Query: 84 IRKHVSGETEKVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAK 143
G + + L + L+ +W +Y + +
Sbjct: 64 GSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAA---- 119
Query: 144 GLDVGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECE- 202
P G +V VP G GLSSSA+ ++ L AQ+ + E
Sbjct: 120 -----PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEH 174
Query: 203 RYIGAQSGGMDQAISIMAKSGFAELIDFNPIRATDVQLP 241
+ G G MDQ IS+M + G A LID + + V L
Sbjct: 175 SFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 138 bits (349), Expect = 2e-39
Identities = 63/206 (30%), Positives = 89/206 (43%), Gaps = 13/206 (6%)
Query: 35 LKSKFIQIFGHAPDV-YARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETE 93
L KF ++FG +V Y SPGR+NLIGEH DY G V P +I T R E +
Sbjct: 6 LTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLR---EDK 62
Query: 94 KVLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGL 153
KV + K + + D+ W +Y G
Sbjct: 63 KVKLYSENFPKLGVIEFDL--DEVEKKDGELWSNYVKGMIVMLKGA------GYEIDKGF 114
Query: 154 DILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGAQSGGM 212
++L+ G +PT SGLSSSA+ + L F + VP+ E+ QL + E YIG SG +
Sbjct: 115 ELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGIL 174
Query: 213 DQAISIMAKSGFAELIDFNPIRATDV 238
DQ + A +D N ++ V
Sbjct: 175 DQFAIGFGEVKKAIELDCNTLKYEMV 200
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 128 bits (323), Expect = 5e-36
Identities = 48/191 (25%), Positives = 71/191 (37%), Gaps = 19/191 (9%)
Query: 52 RSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSLCTYP 111
+SPGRVNLIGEH DY V+PMAI TI+ K+ V
Sbjct: 3 KSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYD-----------KVQLYSEHFNEE 51
Query: 112 AEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGSGLSSSA 171
+ K W Y + GL + G +P G+GLSSSA
Sbjct: 52 KTFTLDNLTKEGSWIDYVKGVLWVLIQEGY-------KIGGLKGKITGDLPLGAGLSSSA 104
Query: 172 AFVCSSTIALMAAFGVEVPKKEIAQLTCECER-YIGAQSGGMDQAISIMAKSGFAELIDF 230
+F L + + + + A L + E ++G G +DQ + K +D
Sbjct: 105 SFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDT 164
Query: 231 NPIRATDVQLP 241
++ + P
Sbjct: 165 QTLQYEYIPFP 175
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 113 bits (284), Expect = 2e-30
Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 13/190 (6%)
Query: 45 HAPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDK 104
+ +P +V L GEH GY + MAI + + I++ E L N S
Sbjct: 2 RGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLG 61
Query: 105 YSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTG 164
+L + ++ + Y +C K +Y L++ P G I + +P
Sbjct: 62 LNL-----NEIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPIS 111
Query: 165 SGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISIMAKSGF 224
GL SSA+ + A+ + E+ EIA+L E+ I ++ D +
Sbjct: 112 CGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITY---KG 168
Query: 225 AELIDFNPIR 234
I N R
Sbjct: 169 ILEIKNNKFR 178
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 106 bits (266), Expect = 3e-27
Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 34/208 (16%)
Query: 46 APDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKY 105
+ + +PG+V L GEH G L +A+ T + +R +G+ L + +
Sbjct: 3 SEVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVW 62
Query: 106 SL-------------------CTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLD 146
+ E +++ F A
Sbjct: 63 DVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRK 122
Query: 147 VGPPVGLDILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGV---------------EVPK 191
LDI+V +P G+GL SSAA+ AL+ A E
Sbjct: 123 QRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDL 182
Query: 192 KEIAQLTCECERYIGAQSGGMDQAISIM 219
K I + E ER I G+D ++S
Sbjct: 183 KSINKWAYEGERVIHGNPSGVDNSVSTW 210
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 80.1 bits (197), Expect = 3e-18
Identities = 51/217 (23%), Positives = 75/217 (34%), Gaps = 75/217 (34%)
Query: 246 FVIA-----HSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDV 300
VI +L ES YN R E R A + +L +++L ++
Sbjct: 4 IVIMNTNKPRALTES--------KYNERFAETREALKRMQTRLD---------IQSLGEL 46
Query: 301 EGLCVAFAGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAK 360
S++ F A + + +E
Sbjct: 47 ------------SNEEFDANTDLIGDET-------------------------------- 62
Query: 361 HYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPEL 420
L +RA H E R + L + G+L+N SH S YE + EL
Sbjct: 63 ---LIKRARHAVYENNRTKIAQ-----KAFVAGNLTKFGELLNASHASLKDDYEVTGLEL 114
Query: 421 EELVTVCRDN-GALGARLTGAGWGGCAVVLVKESIVP 456
+ L + G LGAR+TGAG+GGCA+ LV V
Sbjct: 115 DTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVS 151
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 77.1 bits (189), Expect = 3e-17
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 364 LHQRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEEL 423
+ +++ E RV +D + E + ++G ++ +H + Y SC EL+
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 424 VTVCRDNGALGARLTGAGWGGCAVVLVKESIVP 456
V + GA GARLTGAG+GG A+ LV +
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAK 141
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 76.4 bits (187), Expect = 7e-17
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 24/174 (13%)
Query: 49 VYARSPGRVNLIGEH-IDYEGYSVLPMAIRQDTIVAIRKHVSGETEKVLKIANVSDKYSL 107
+ ++ G++ GE+ I G L I I S +
Sbjct: 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR---------IYSDMFD 52
Query: 108 CTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLDILVDGIVPTGS-- 165
P+ + L +++ +G ++ P + + G +
Sbjct: 53 FAVDLRPNPDYSLIQETI--------ALMGDFLAVRGQNLRP---FSLAIYGKMEREGKK 101
Query: 166 -GLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQAISI 218
GL SS + V AL+A + + V + + +LT G D A
Sbjct: 102 FGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIA 155
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 74.3 bits (182), Expect = 3e-16
Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 75/210 (35%)
Query: 248 IAHSLAESLKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCVAF 307
+ HSLA S Y R +C A LG ++L +V+
Sbjct: 11 VRHSLASS--------EYPVRRRQCEEVARALG-------------KESLREVQ------ 43
Query: 308 AGKNGSDDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQR 367
+ A ++ + +E + R
Sbjct: 44 ------LEELEAARDLVSKEGFR------------------------------------R 61
Query: 368 AAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVC 427
A HV E +R + R G LM +SH S YE SCPEL++LV
Sbjct: 62 ARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAA 116
Query: 428 RD-NGALGARLTGAGWGGCAVVLVKESIVP 456
G G+R+TG G+GGC V L++ S P
Sbjct: 117 LAVPGVYGSRMTGGGFGGCTVTLLEASAAP 146
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 64.3 bits (156), Expect = 8e-13
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 366 QRAAHVYSEAKRVYAFKDTVYSNLSDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVT 425
+ E +RV ++ L +LM+ + H + L++L
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQ 95
Query: 426 VCRDNGALGARLTGAGWGGCAVVLVKESIVP 456
V +G ++LTGAG GGC + L+K +
Sbjct: 96 VTAAHGL-HSKLTGAGGGGCGITLLKPGLER 125
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 51.9 bits (124), Expect = 8e-09
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 333 DIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDE 392
+ E+ ++ I + ++ E +V + L +
Sbjct: 3 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV------IDEALKIK 56
Query: 393 DKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLVKE 452
+ G LM +H S P+L+ +V + G GA+LTGAG GGC ++LV E
Sbjct: 57 N-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILVNE 113
Query: 453 SIV 455
Sbjct: 114 EKE 116
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 41.6 bits (97), Expect = 4e-05
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 5/147 (3%)
Query: 95 VLKIANVSDKYSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLD 154
V + + + Y + A D+E+ ++ K D G+
Sbjct: 20 VFGLC-LKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVK 78
Query: 155 ILVDGIVPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLTCECERYIGAQSGGMDQ 214
I + V GSGL SSAA + A+ F + + K ++ E +
Sbjct: 79 ITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNV 138
Query: 215 AISIMAKSGFAELIDFNPIRATDVQLP 241
A +I GF + ++ P+ + +P
Sbjct: 139 APAIF--GGFTMVTNYEPLEV--LHIP 161
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 38.2 bits (88), Expect = 4e-04
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 392 EDKLRRLGDLMNDSHHSCSVL-YECSCPELEELVTVCRDNGALGARLTGAGWGGCAVVLV 450
+ K ++ + + + L + P L +L +D A A+ +GAG G C + L
Sbjct: 51 QGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIALS 109
Query: 451 KE 452
+
Sbjct: 110 FD 111
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 34.2 bits (78), Expect = 0.016
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 161 VPTGSGLSSSAAFVCSSTIALMAAFGVEVPKKEIAQLT 198
PT +GL+SSAA + A+ + + EI+++
Sbjct: 110 FPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIA 147
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 60
Score = 30.0 bits (68), Expect = 0.075
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 319 AVKEFLHEEPYMAKDIEKIIEEKL 342
+L + P AK+IEK + E L
Sbjct: 36 NATAWLKDNPETAKEIEKKVRELL 59
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 60
Score = 28.8 bits (65), Expect = 0.16
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 319 AVKEFLHEEPYMAKDIEKIIEEKL 342
+ FL E +A +IEK I+EKL
Sbjct: 36 NARNFLVENADVADEIEKKIKEKL 59
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 59
Score = 28.0 bits (63), Expect = 0.31
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 319 AVKEFLHEEPYMAKDIEKIIEEKL 342
++ E P M ++I + +
Sbjct: 35 KTIAYIAERPEMEQEIRDRVMAAI 58
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus
aureus [TaxId: 1280]}
Length = 136
Score = 28.6 bits (64), Expect = 0.66
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 314 DDPFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKH-YKLHQ 366
D P E + +E M KD+E IIE+ N ++ +++KH YK H
Sbjct: 55 DKPHRISNERIEKE--MIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHS 106
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A
virus, different strains [TaxId: 11320]}
Length = 387
Score = 29.0 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 414 ECSC-PELEELVTVCRDN 430
ECSC P + VCRDN
Sbjct: 195 ECSCYPRYPGVRCVCRDN 212
>d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 102
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 269 VVECRLAAIVLGIKLGMKPQEAISKV 294
VVE A +GI G + I K+
Sbjct: 76 VVEASQEAQKVGINPGDVLRNVIDKL 101
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
different strains [TaxId: 11320]}
Length = 388
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 414 ECSC-PELEELVTVCRDN 430
ECSC E E+ CRDN
Sbjct: 197 ECSCYGERAEITCTCRDN 214
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
(Petroselinum crispum), PAL1 [TaxId: 4043]}
Length = 692
Score = 28.4 bits (63), Expect = 2.5
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 316 PFLAVKEFLHEEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHV 371
+ V LH + KD+ ++++ + + + S Y L Q+
Sbjct: 524 LTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSAT-------YPLMQKLRQT 572
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
different strains [TaxId: 11520]}
Length = 390
Score = 27.9 bits (62), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 414 ECSC--PELEELVTVCRDN 430
EC+C + + CRDN
Sbjct: 200 ECTCGFASNKTIECACRDN 218
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 26.4 bits (57), Expect = 5.0
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 105 YSLCTYPAEPDQELDLKHHQWGHYFICGYKGFYEYVKAKGLDVGPPVGLD 154
Y + ++ + ++CG KG + + + + G+D
Sbjct: 92 YIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGID 141
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 25.6 bits (55), Expect = 8.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 390 SDEDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNG 431
+E K L DL + + +V++ + ++EEL T R++
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 51
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId:
9606]}
Length = 51
Score = 23.9 bits (52), Expect = 8.7
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 128 YFICGYKGFYEYVKAKGL 145
Y +CG +GF+ Y G+
Sbjct: 16 YLVCGERGFF-YTPKTGI 32
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 24.8 bits (54), Expect = 9.1
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 326 EEPYMAKDIEKIIEEKLSSIFANSSSSLDVLNAAKHYKLHQRAAHVYSEA---KRVYAFK 382
E+P +I+ ++ L S + V H++ E +
Sbjct: 3 EDPMENNEIQSVLMNAL------SLQEVHVSGDGSHFQ-----VIAVGELFDGMSRVKKQ 51
Query: 383 DTVYSNLSDE 392
TVY L +
Sbjct: 52 QTVYGPLMEY 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,691,111
Number of extensions: 80280
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 32
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)