BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048624
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 285/528 (53%), Gaps = 20/528 (3%)
Query: 138 SVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPN 197
++++ T + +++++ NL+ G +A TE+ HG++++GL+T AT+DP EFI+N+P
Sbjct: 110 TLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169
Query: 198 DGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEI 257
+IKWW G A V A+L+ ++G G+HAF+VPIR++ TH+ LPGI +
Sbjct: 170 VTSIKWWPGGLGKTSNHAIVLAQLI-----TQGEC-YGLHAFVVPIREIGTHKPLPGITV 223
Query: 258 HDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGEL 317
D G K G +DNG L+ + RIPR+N+L ++ V DG Y P NK T G +
Sbjct: 224 GDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVK--PLSNK---LTYGTM 278
Query: 318 VGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPR-KPEVSILDYQSQQHKLMPMLAST 376
V R L ++ L A TIAIRYS +R+Q + +PE ILD+Q+QQ+KL P+LA+
Sbjct: 279 VFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATA 338
Query: 377 YAFHFATANLVEKYSEMKKT---HDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGG 433
YAFHF + E Y + ++ D + ++HAL+AGLK++ T + CR ACGG
Sbjct: 339 YAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGG 398
Query: 434 HGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRES 493
HGY+ + ++ TFEG+NTV++ Q A L+K Y + G + +YL +
Sbjct: 399 HGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLND- 457
Query: 494 MNAYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKH-SKTLGSFGAW 552
+ + QP V A W + + +A++ R +RL++ A L+ H S AW
Sbjct: 458 LPSQRIQPQQV-AVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAW 516
Query: 553 NRCLNHLLTLAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALNRIWNDIGTYRN 612
N L+ +E+H V++ F + + D + +A L+ +C LY+L I G +
Sbjct: 517 NLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLE 576
Query: 613 VDYVAPNKAKAIH-KLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR 659
+ + ++ ++ E L+ +R A L+DAFD D + + R
Sbjct: 577 GSIITGAQLSQVNARILELLTL-IRPNAVALVDAFDFKDMTLGSVLGR 623
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 266 bits (679), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 266/525 (50%), Gaps = 26/525 (4%)
Query: 143 GTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIK 202
GT++ + K+ + + GC+A TEL HGSNVQGL+T AT DP DEF+I+TP A K
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK 173
Query: 203 WWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGH 262
WW G A V+A+L+ + G D G+H FIV +R ++ H LP I + D G
Sbjct: 174 WWPGGLGKVSTHAVVYARLI-----TNG-KDYGIHGFIVQLRSLEDHSPLPNITVGDIGT 227
Query: 263 KVG---LNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVG 319
K+G N +DNG L F VRIPRD +L R V+R+G+Y S + K+ G +V
Sbjct: 228 KMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS--DVPKQL--VYGTMVY 283
Query: 320 GRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKP-EVSILDYQSQQHKLMPMLASTYA 378
R + + L A IA RYS +R+QFG E ++DY++QQ++L P+LAS YA
Sbjct: 284 VRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYA 343
Query: 379 FHFATANLVEKYSEMKK---THDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHG 435
F F L Y+++ + D + + HA +AGLKS T+ TA + CR+ CGGHG
Sbjct: 344 FRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403
Query: 436 YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMN 495
Y + L + T+EGDN VL QVA L+K + G T Y+ +
Sbjct: 404 YLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRA-- 461
Query: 496 AYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRC 555
A+L Q + E +P L+AF R R+ + A L K F
Sbjct: 462 AHLLQCRSGVQK---AEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGF---QEL 515
Query: 556 LNHLLTLAESHIESVILAKFIEAV-QNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVD 614
L L+ A +H + ++++KFI + Q+ + L +C +YAL + +G + + +
Sbjct: 516 LADLVEAAIAHCQLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTN 575
Query: 615 YVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR 659
+ P +A + L QVR A L+DAF+ D+ + + R
Sbjct: 576 CITPKQASLANDQLRSLYTQVRPNAVALVDAFNYTDHYLNSVLGR 620
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 177/525 (33%), Positives = 270/525 (51%), Gaps = 26/525 (4%)
Query: 143 GTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIK 202
GT K ++K+ + GC+A TEL HGSNVQGL+T ATFDP DEF+I++P + K
Sbjct: 133 GTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 192
Query: 203 WWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGH 262
WW G A V+A+L+ D K Y GV+ FIV +R ++ H+ LPG+ + D G
Sbjct: 193 WWPGGLGKVSTHAVVYARLIT---DGKDY---GVNGFIVQLRSLEDHKPLPGVTVGDIGM 246
Query: 263 KVG---LNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVG 319
K G N +DNG L F VRIPRD +L R V+++GKY S I ++ G +V
Sbjct: 247 KFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQS--DIPRQL--LYGTMVY 302
Query: 320 GRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPR-KPEVSILDYQSQQHKLMPMLASTYA 378
R + + + A IA RYS +R+QFG E ++DY++QQ++L P+LAS YA
Sbjct: 303 VRQSIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYA 362
Query: 379 FHFATANLVEKYSEMKK---THDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHG 435
F F L Y+++ + +D + + HA +AGLKS TS TA + CR+ CGGHG
Sbjct: 363 FRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHG 422
Query: 436 YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMN 495
Y + L + T+EGDN VL QVA L+K + G T +Y+ +
Sbjct: 423 YLCSSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEH 482
Query: 496 AYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRC 555
+ + A E+ L+ P L+AF R++R+ + A L K F
Sbjct: 483 LMQCRSDVKQA----EDWLK-PSAVLEAFEARSARMSVACAKNLSKFENQEEGFA---EL 534
Query: 556 LNHLLTLAESHIESVILAKFIEAV-QNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVD 614
L+ A +H + ++++K+IE + QN P + L+++C +Y+L + G +
Sbjct: 535 AADLVEAAVAHCQLIVVSKYIEKLQQNIPGKGVKQQLEVLCGIYSLFILHKHQGDFLGTG 594
Query: 615 YVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR 659
Y+ + + L Q+R A L+DAF+ D+ + + R
Sbjct: 595 YITSKQGSLANDQLRALYSQLRPNAVSLVDAFNYTDHYLGSILGR 639
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 57/368 (15%)
Query: 111 FAIA-EAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTEL 169
+AIA E + S G+ M V SL+ G ++ G+K+ + + + D GCFA++E
Sbjct: 70 YAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEP 129
Query: 170 HHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSK 229
+GS+ T A + D +++N K WI N A A VFA +
Sbjct: 130 GNGSDAGAASTTARAE--GDSWVLN-----GTKAWITN-AWEASAAVVFA------STDR 175
Query: 230 GYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNR 289
+ + AF+VP+ PG+ + K+G+ G L F RIP+D++L
Sbjct: 176 ALQNKSISAFLVPM-------PTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGE 228
Query: 290 FGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQF 349
G F + L GR+G+A ++G+ + A A+ Y+ R F
Sbjct: 229 PG----------------MGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAF 272
Query: 350 GPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALS 409
G P + Q Q KL M A +A L+ + M K + + + +
Sbjct: 273 GAP------LTKLQVIQFKLADM-----ALALESARLLTWRAAMLKDNKKPFIKEAAMAK 321
Query: 410 AGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRN--DHDIFQTFEGDNTVLLQQVA 467
T+ + +++ + GG GY V + R+ D I + +EG + + +A
Sbjct: 322 LAASEAATAISHQAIQI----LGGMGY--VTEMPAERHYRDARITEIYEGTSEIQRLVIA 375
Query: 468 GDLLKQYK 475
G LL+ Y+
Sbjct: 376 GHLLRSYR 383
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 144/353 (40%), Gaps = 52/353 (14%)
Query: 123 SLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVA 182
S G+ M V SL+ G ++ G+ + + ++ N D GCFA++E +GS+ T A
Sbjct: 87 STGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTA 146
Query: 183 TFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVP 242
+ D +++N K WI N + VFA + + G+ AF+VP
Sbjct: 147 REE--GDSWVLN-----GTKAWITN-SWEASATVVFAS------TDRSRQNKGISAFLVP 192
Query: 243 IRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSS 302
+ PG+ + K+G+ L F RIP++NLL G
Sbjct: 193 M-------PTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG----------- 234
Query: 303 LPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDY 362
F + L GR+G+A ++G+ + + A++Y+ R FG P +
Sbjct: 235 -----MGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAP------LTKL 283
Query: 363 QSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAK 422
Q+ Q KL M A +A L+ + M K + + + T+ + +
Sbjct: 284 QNIQFKLADM-----ALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQ 338
Query: 423 SLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
++ + GG GY D I + +EG + + +AG LL+ Y+
Sbjct: 339 AIQI----LGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLRSYR 387
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 141/354 (39%), Gaps = 44/354 (12%)
Query: 109 QYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTE 168
QY + E VG D+ +GI +G S+ ++ GTK ++KY + + + F +TE
Sbjct: 91 QYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTE 150
Query: 169 LHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDS 228
GS+ ++T A P + +N K WI N + F TVFAK + T +
Sbjct: 151 PSSGSDAASIRTSAVPSPCGKYYTLNGS-----KLWISNGGLADIF-TVFAKTPV-TDPA 203
Query: 229 KGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLN 288
G + AF+V + GI K+G+ + + F VR+P +N+L
Sbjct: 204 TGAVKEKITAFVV-------ERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLG 256
Query: 289 RFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQ 348
G F + L GR G+A + G ++ A+ ++ R Q
Sbjct: 257 EVGS----------------GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQ 300
Query: 349 FGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHAL 408
FG I ++ Q KL M+ Y + E + M + +Q D
Sbjct: 301 FGE------KIHNFGLIQEKLARMVMLQY--------VTESMAYMVSANMDQGATDFQIE 346
Query: 409 SAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVL 462
+A K + + K C + GG G+ + D IF+ FEG N +L
Sbjct: 347 AAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDIL 400
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 141/354 (39%), Gaps = 44/354 (12%)
Query: 109 QYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTE 168
QY + E VG D+ +GI +G S+ ++ GTK ++KY + + + F +TE
Sbjct: 111 QYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTE 170
Query: 169 LHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDS 228
GS+ ++T A P + +N K WI N + F TVFAK + T +
Sbjct: 171 PSSGSDAASIRTSAVPSPCGKYYTLNGS-----KLWISNGGLADIF-TVFAKTPV-TDPA 223
Query: 229 KGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLN 288
G + AF+V + GI K+G+ + + F VR+P +N+L
Sbjct: 224 TGAVKEKITAFVV-------ERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLG 276
Query: 289 RFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQ 348
G F + L GR G+A + G ++ A+ ++ R Q
Sbjct: 277 EVGS----------------GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQ 320
Query: 349 FGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHAL 408
FG I ++ Q KL M+ Y + E + M + +Q D
Sbjct: 321 FGE------KIHNFGLIQEKLARMVMLQY--------VTESMAYMVSANMDQGATDFQIE 366
Query: 409 SAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVL 462
+A K + + K C + GG G+ + D IF+ FEG N +L
Sbjct: 367 AAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDIL 420
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 145/366 (39%), Gaps = 57/366 (15%)
Query: 110 YFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTEL 169
Y E + D + I + SL + GT+ ++K+ + G F +TE
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 170 HHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSK 229
+ G++ G QT+AT K++ T N I G AA VFA T SK
Sbjct: 132 NAGTDASGQQTIAT----KNDDGTYTLNGSKIFITNGGAA---DIYIVFAM----TDKSK 180
Query: 230 GYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNR 289
G + G+ AFI+ PG K+G++ L F V++P +N+L
Sbjct: 181 G--NHGITAFIL-------EDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGE 231
Query: 290 FGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQF 349
G K F + L GGR+G+A ++G+ + A A+ YS R QF
Sbjct: 232 EG----------------KGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQF 275
Query: 350 GPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALS 409
G P + +QS KL M A NLV K + K+ G +
Sbjct: 276 GKP------LCKFQSISFKLADMKMQIEAAR----NLVYKAACKKQE------GKPFTVD 319
Query: 410 AGLKSYVTSYTAKSLSVCREAC---GGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQV 466
A + V S A + V EA GG+GY+ D I Q +EG N V L
Sbjct: 320 AAIAKRVASDVA--MRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVT 377
Query: 467 AGDLLK 472
G LL+
Sbjct: 378 GGALLR 383
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 57/347 (16%)
Query: 112 AIAEA-VGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELH 170
AIA A + VD S + V SL ++ G++ ++KY + L+ C+A+TE
Sbjct: 119 AIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPD 178
Query: 171 HGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKG 230
+GS+ GL T AT ++ + IN K WIGN + FA L++ ++
Sbjct: 179 NGSDASGLGTTAT--KVEGGWKIN-----GQKRWIGN--------STFADLLIIF--ARN 221
Query: 231 YSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRF 290
+ ++ FIV + PG++ +K+GL V NG + +V +P ++
Sbjct: 222 TTTNQINGFIV-------KKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDED----- 269
Query: 291 GDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFG 350
LP +N F T L RV +A+ +G+ + RY R+QFG
Sbjct: 270 -----------RLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFG 317
Query: 351 PPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSA 410
P + +Q Q KL+ ML + A L + Y + T + +G
Sbjct: 318 AP------LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLG------- 364
Query: 411 GLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEG 457
K++++S ++ S+ RE GG+G A D + T+EG
Sbjct: 365 --KAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 57/347 (16%)
Query: 112 AIAEA-VGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELH 170
AIA A + VD S + V SL ++ G++ ++KY + L+ C+A+TE
Sbjct: 119 AIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPD 178
Query: 171 HGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKG 230
+GS+ GL T AT ++ + IN K WIGN + FA L++ ++
Sbjct: 179 NGSDASGLGTTAT--KVEGGWKIN-----GQKRWIGN--------STFADLLI--IFARN 221
Query: 231 YSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRF 290
+ ++ FIV + PG++ +K+GL V NG + +V +P ++
Sbjct: 222 TTTNQINGFIV-------KKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDED----- 269
Query: 291 GDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFG 350
LP +N F T L RV +A+ +G+ + RY R+QFG
Sbjct: 270 -----------RLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFG 317
Query: 351 PPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSA 410
P + +Q Q KL+ ML + A L + Y + T + +G
Sbjct: 318 AP------LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLG------- 364
Query: 411 GLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEG 457
K++++S ++ S+ RE GG+G A D + T+EG
Sbjct: 365 --KAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 156/400 (39%), Gaps = 62/400 (15%)
Query: 78 DDHRELCWRQL-----LGLVREAGIKPFKYVAEDPAQYFAIAEAVGSVDMSLGIKMGVQY 132
D E W QL LGL+ + + V D + E + + D S+ + + V
Sbjct: 30 DRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTS 89
Query: 133 SLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFI 192
L ++ G++ + +Y + ++ G F +TE GS+ + L+ A +K F+
Sbjct: 90 GLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEAR--RVKGGFV 147
Query: 193 INTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTL 252
+N +K WI +A H V A+ ++ G+ AF+V +
Sbjct: 148 LN-----GVKSWITSAG-HAHLYVVMAR-----------TEKGISAFLV-------EKGT 183
Query: 253 PGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAA 312
PG+ K+GL+ +R V +P +NLL G + A
Sbjct: 184 PGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEG----------------RGLAY 227
Query: 313 TLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPM 372
L L GRVG+A +VG+ + A IA Y+ R+QFG K +H+ +
Sbjct: 228 ALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLK-----------EHQAIAF 276
Query: 373 LASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACG 432
+ A A + + KK E+ + A + T +++ V G
Sbjct: 277 KIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQV----LG 332
Query: 433 GHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472
G+GY R D + + +EG + + +A +L +
Sbjct: 333 GYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 53/362 (14%)
Query: 113 IAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHG 172
+ E + VD S+ + +Q +L + GT++ + Y + + G F ++E G
Sbjct: 96 VIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAG 154
Query: 173 SNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYS 232
S+ L+T A D D +++N K WI +A G F +M + GY
Sbjct: 155 SDSFALKTRA--DKEGDYYVLNGS-----KMWISSAEHAGLFL-----VMANVDPTIGYK 202
Query: 233 DMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGD 292
G+ +F+V RD PG+ I +K+GL L F +V++P N+L + G
Sbjct: 203 --GITSFLVD-RDT------PGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIG- 252
Query: 293 VSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352
+ +G L GR+G+A +G+ + I Y R QFG
Sbjct: 253 ---------------HGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGK- 296
Query: 353 RKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGL 412
+ D+Q QH++ + A T N K E ++
Sbjct: 297 -----RLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKE---------ASMA 342
Query: 413 KSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472
K Y + ++ S C E GG GY D I +EG + + L +A +
Sbjct: 343 KYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDA 402
Query: 473 QY 474
+Y
Sbjct: 403 EY 404
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 148/363 (40%), Gaps = 70/363 (19%)
Query: 126 IKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFD 185
+ G S+ ++ GT++ + KY + + ++ + +TE GS+ +T AT
Sbjct: 108 VTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLS 167
Query: 186 PIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRD 245
+I+N +K WI NA F TVFAK+ D + ++ AF+V RD
Sbjct: 168 EDGKHYILN-----GVKQWISNAGFAHLF-TVFAKV-----DGEHFT-----AFLVE-RD 210
Query: 246 MKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPT 305
PG+ K+G+ + V++P +N+L G++ + K ++
Sbjct: 211 T------PGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVL---GEIGKGHKIAFNVLN 261
Query: 306 INKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQ 365
+ GR L +VG K A ++ +Y+ R QFG P I +
Sbjct: 262 V-------------GRYKLGAGAVGGAKRALELSAQYATQRVQFGRP------IGRFGLI 302
Query: 366 QHKLMPMLASTYAFHFA---TANLVEKYSEMKKTHDEQLVGDV--HALSAGLKSY-VTSY 419
Q KL M + YA A T L+ DE L+G A+ AG++ Y V +
Sbjct: 303 QQKLGEMASRIYAAESAVYRTVGLI----------DEALLGKKGPEAVMAGIEEYAVEAS 352
Query: 420 TAKSLS------VCREAC---GGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDL 470
K L V E GG+GY+ D I + FEG N + + G L
Sbjct: 353 IIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGML 412
Query: 471 LKQ 473
L++
Sbjct: 413 LRR 415
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 61/348 (17%)
Query: 138 SVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPN 197
+++ G++ + KY + + ++ G F +TE GS+V + + A + D +++N
Sbjct: 100 TILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTA--EDKGDHWLLNGS- 156
Query: 198 DGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEI 257
K WI NAA A V L+ + K G+ AF++ R+ PGI+
Sbjct: 157 ----KTWISNAAQ----ADV---LIYYAYTDKAAGSRGLSAFVIEPRN------FPGIKT 199
Query: 258 HDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGEL 317
+ K+G + G L +V++P++N+L + GD +R G L
Sbjct: 200 SNL-EKLGSHASPTGELFLDNVKVPKENILGKPGDGAR----------------IVFGSL 242
Query: 318 VGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTY 377
R+ A VG+ + AI+Y R+QFG P I D+Q Q + M
Sbjct: 243 NHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKP------IGDFQMNQDMIAQM----- 291
Query: 378 AFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTA-KSLSVC----REACG 432
VE + + D L+ GL + Y A +++S C G
Sbjct: 292 --------AVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILG 343
Query: 433 GHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQG 480
+GY+ D + EG + +A D L K +G
Sbjct: 344 AYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANRKG 391
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 144/349 (41%), Gaps = 52/349 (14%)
Query: 113 IAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHG 172
+ E V VD S + V L +I G+++ + + + + + +A++E G
Sbjct: 86 VIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAG 144
Query: 173 SNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYS 232
S+ ++T A D D++I+N K WI N GK + + +M T KG +
Sbjct: 145 SDAASMRTRAVAD--GDDWILN-----GSKCWITNG---GK--STWYTVMAVTDPDKGAN 192
Query: 233 DMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGD 292
G+ AF+V H+ G + K+G+ G L F + RIP D ++ G
Sbjct: 193 --GISAFMV-------HKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGT 243
Query: 293 VSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352
+ ++L T++ R + +VG+ + A AI Y+ R+QFG P
Sbjct: 244 -----GFKTALATLDHT-----------RPTIGAQAVGIAQGALDAAIAYTKERKQFGRP 287
Query: 353 RKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGL 412
+ D Q Q L M A A L+ YS + E+ GD+ +SA
Sbjct: 288 ------VSDNQGVQFMLADM-----AMKIEAARLM-VYSAAARA--ERGEGDLGFISAAS 333
Query: 413 KSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTV 461
K + + + + + GG+GY + D I Q +EG N +
Sbjct: 334 KCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQI 382
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 52/323 (16%)
Query: 139 VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPND 198
V+ GT++ ++++ + FA++E +GS+ L+T A D +++N
Sbjct: 97 VLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLN---- 150
Query: 199 GAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIH 258
K WI N ++ VFA + P KG V A +V + PG +
Sbjct: 151 -GTKMWISNGG-EAEWVVVFATVN-PELRHKG-----VVALVV-------ERGTPGFKAI 195
Query: 259 DCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELV 318
K+G L F V++P +N L G+ + ++ T+NK
Sbjct: 196 KIHGKMGQRASGTYELVFEDVKVPVENRLGEEGE-----GFKIAMQTLNKT--------- 241
Query: 319 GGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYA 378
R+ +A SVGV + A A +Y+ R+ FG P I ++Q+ Q KL+ ML
Sbjct: 242 --RIPVAAGSVGVARRALDEARKYAKEREAFGEP------IANFQAIQFKLVDML----- 288
Query: 379 FHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAA 438
TA + Y+ +Q + HA SA K+Y + ++ + + GG+GY
Sbjct: 289 IGIETARMYTYYAAWLA---DQGLPHAHA-SAIAKAYASEIAFEAANQAIQIHGGYGYVR 344
Query: 439 VNRFGSLRNDHDIFQTFEGDNTV 461
L D + Q +EG N +
Sbjct: 345 EFPVEKLLRDVKLNQIYEGTNEI 367
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 131/363 (36%), Gaps = 61/363 (16%)
Query: 124 LGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183
I G + ++ G ++ + KY + + +A+TE GS+ G +T A
Sbjct: 111 FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTAR 170
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ +++N K WI N+A FA VF ++ D + +S AFIV
Sbjct: 171 LNAEGTHYVLNGE-----KQWITNSA----FADVF--IVYAKIDGEHFS-----AFIV-- 212
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
+ G+ K G+ L +P++NLL G
Sbjct: 213 -----EKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIG------------ 255
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
K L GR L +VG K A I+ +Y+ RQQF P I +
Sbjct: 256 ----KGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQP------IARFP 305
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSY-------- 415
Q KL A TYA + V + T E+ V D A++A + Y
Sbjct: 306 LIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNK 365
Query: 416 -----VTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDL 470
V YT + GG+G+ A D I + FEG N + V G
Sbjct: 366 VFGSEVLDYTVDE---GVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTF 422
Query: 471 LKQ 473
L++
Sbjct: 423 LRK 425
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 49/243 (20%)
Query: 130 VQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKD 189
VQ SL S+ G+++ ++++ + D GCF +TE GSN G++T A D
Sbjct: 109 VQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD--GS 166
Query: 190 EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTH 249
++I+N K WI N + ATV+A+ +D G+ F+VP
Sbjct: 167 DWILN-----GTKMWITNGNL-ADVATVWAQ-----------TDDGIRGFLVPT------ 203
Query: 250 QTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKR 309
PG ++ K+ L L +VR+P ++ LP + +
Sbjct: 204 -DTPGFTANEIHRKLSLRASVTSELVLDNVRLP----------------ASAQLP-LAEG 245
Query: 310 FAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKL 369
+A L L R G+ + ++G + + I Y+ R+ F P + +YQ Q KL
Sbjct: 246 LSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKP------LSNYQLTQEKL 299
Query: 370 MPM 372
M
Sbjct: 300 ANM 302
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 60/335 (17%)
Query: 43 AVIWLYERKAQGDTRESVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKY 102
AV+ ER+ + DT SV +P + + E EL R+L + E G+
Sbjct: 28 AVLSAEEREIR-DTVRSVVQRRIKPHIASWYE-----DGELPARELAVELGELGLLGMHL 81
Query: 103 VAEDPAQYFAIAEAVGSVDMSLGIK-----MGVQYSLWGGSVINLGTKKHRDKYYDGIDN 157
A A+A + +++ G + VQ SL ++ G+ + +D++ + +
Sbjct: 82 KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMAS 141
Query: 158 LDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATV 217
GCF +TE HGS+ G++T AT D++I+ K WI N +V A V
Sbjct: 142 GHRIGCFGLTEPDHGSDPAGMRTRATRS--GDDWILT-----GTKMWITNGSV-ADVAVV 193
Query: 218 FAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFC 277
+A+ +D G+ F+VP PG + K+ L L
Sbjct: 194 WAR-----------TDEGIRGFVVPT-------DTPGFTANTIKSKMSLRASVTSELVLD 235
Query: 278 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAAT 337
VR+P D +R TS A L L R G+ + ++G +
Sbjct: 236 GVRLP---------DSARLPGATS--------LGAPLRCLNEARFGIVFGALGAARDCLE 278
Query: 338 IAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPM 372
A+ Y+ R+QF P I +Q Q KL M
Sbjct: 279 TALAYACSREQFDRP------IGGFQLTQQKLADM 307
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 119/312 (38%), Gaps = 52/312 (16%)
Query: 75 ILKDDHRELCWRQLLGLVREAG-----IKPFKYVAEDPAQYFAIAEAVGSVDMSLGIKMG 129
IL + E+ R+++ + E G IK + Y +A + VD M
Sbjct: 39 ILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMS 98
Query: 130 VQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKD 189
VQ SL + G+++ R KY + + GCF +TE + GS+ ++T A ++
Sbjct: 99 VQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNK 158
Query: 190 EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTH 249
+ +N K WI N+ + F V+A+ D + F++
Sbjct: 159 SYTLN-----GTKTWITNSPMADLF-VVWARC----------EDGCIRGFLL-------E 195
Query: 250 QTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKR 309
+ + G+ K L G + V +P +N+L G S G +
Sbjct: 196 KGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP--GASSLGGPF---------- 243
Query: 310 FAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKL 369
G L R G+A+ +G + A +Y+L R QFG P + Q Q KL
Sbjct: 244 -----GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVP------LARNQLIQKKL 292
Query: 370 MPMLAS-TYAFH 380
ML T H
Sbjct: 293 ADMLTEITLGLH 304
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 39/247 (15%)
Query: 106 DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFA 165
D Y IA V VD M VQ SL + G+ ++KY + ++ GCF
Sbjct: 79 DYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFG 138
Query: 166 MTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPT 225
+TE +HGS+ + T A P + K WI N+ + F V+AKL
Sbjct: 139 LTEPNHGSDPGSMVTRARKVP-------GGYSLSGSKMWITNSPIADVF-VVWAKL---- 186
Query: 226 HDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDN 285
D G + + FI+ K + L IH KVGL G + +P +N
Sbjct: 187 -DEDGRDE--IRGFILE----KGCKGLSAPAIHG---KVGLRASITGEIVLDEAFVPEEN 236
Query: 286 LLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLL 345
+L + G +T L R G+A+ ++G + IA +Y L
Sbjct: 237 ILPHVKGLR--GPFTC---------------LNSARYGIAWGALGAAESCWHIARQYVLD 279
Query: 346 RQQFGPP 352
R+QFG P
Sbjct: 280 RKQFGRP 286
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 39/247 (15%)
Query: 106 DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFA 165
D Y IA V VD M VQ SL + G+ ++KY + ++ GCF
Sbjct: 78 DYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFG 137
Query: 166 MTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPT 225
+TE +HGS+ + T A P + K WI N+ + F V+AKL
Sbjct: 138 LTEPNHGSDPGSMVTRARKVP-------GGYSLSGSKMWITNSPIADVF-VVWAKL---- 185
Query: 226 HDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDN 285
D G + + FI+ K + L IH KVGL G + +P +N
Sbjct: 186 -DEDGRDE--IRGFILE----KGCKGLSAPAIHG---KVGLRASITGEIVLDEAFVPEEN 235
Query: 286 LLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLL 345
+L + G +T L R G+A+ ++G + IA +Y L
Sbjct: 236 ILPHVKGLR--GPFTC---------------LNSARYGIAWGALGAAESCWHIARQYVLD 278
Query: 346 RQQFGPP 352
R+QFG P
Sbjct: 279 RKQFGRP 285
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 119/312 (38%), Gaps = 52/312 (16%)
Query: 75 ILKDDHRELCWRQLLGLVREAG-----IKPFKYVAEDPAQYFAIAEAVGSVDMSLGIKMG 129
IL + E+ R+++ + E G IK + Y +A + VD M
Sbjct: 39 ILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMS 98
Query: 130 VQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKD 189
VQ SL + G+++ R KY + + GCF +TE + GS+ ++T A ++
Sbjct: 99 VQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNK 158
Query: 190 EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTH 249
+ +N K WI N+ + F V+A+ D + F++
Sbjct: 159 SYTLN-----GTKTWITNSPMADLF-VVWARC----------EDGCIRGFLL-------E 195
Query: 250 QTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKR 309
+ + G+ K L G + V +P +N+L G S G +
Sbjct: 196 KGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP--GASSLGGPF---------- 243
Query: 310 FAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKL 369
G L R G+A+ +G + A +Y+L R QFG P + Q Q KL
Sbjct: 244 -----GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVP------LARNQLIQKKL 292
Query: 370 MPMLAS-TYAFH 380
ML T H
Sbjct: 293 ADMLTEITLGLH 304
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 39/247 (15%)
Query: 106 DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFA 165
D Y IA V VD M VQ SL + G+ ++KY + ++ GCF
Sbjct: 82 DYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFG 141
Query: 166 MTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPT 225
+TE +HGS+ + T A P + K WI N+ + F V+AKL
Sbjct: 142 LTEPNHGSDPGSMVTRARKVP-------GGYSLSGSKMWITNSPIADVF-VVWAKL---- 189
Query: 226 HDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDN 285
D G + + FI+ K + L IH KVGL G + +P +N
Sbjct: 190 -DEDGRDE--IRGFILE----KGCKGLSAPAIHG---KVGLRASITGEIVLDEAFVPEEN 239
Query: 286 LLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLL 345
+L + G +T L R G+A+ ++G + IA +Y L
Sbjct: 240 ILPHVKGLR--GPFTC---------------LNSARYGIAWGALGAAESCWHIARQYVLD 282
Query: 346 RQQFGPP 352
R+QFG P
Sbjct: 283 RKQFGRP 289
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 119/312 (38%), Gaps = 52/312 (16%)
Query: 75 ILKDDHRELCWRQLLGLVREAG-----IKPFKYVAEDPAQYFAIAEAVGSVDMSLGIKMG 129
IL + E+ R+++ + E G IK + Y +A + VD M
Sbjct: 37 ILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMS 96
Query: 130 VQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKD 189
VQ SL + G+++ R KY + + GCF +TE + GS+ ++T A ++
Sbjct: 97 VQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNK 156
Query: 190 EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTH 249
+ +N K WI N+ + F V+A+ D + F++
Sbjct: 157 SYTLN-----GTKTWITNSPMADLF-VVWARC----------EDGCIRGFLL-------E 193
Query: 250 QTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKR 309
+ + G+ K L G + V +P +N+L G S G +
Sbjct: 194 KGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP--GASSLGGPF---------- 241
Query: 310 FAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKL 369
G L R G+A+ +G + A +Y+L R QFG P + Q Q KL
Sbjct: 242 -----GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVP------LARNQLIQKKL 290
Query: 370 MPMLAS-TYAFH 380
ML T H
Sbjct: 291 ADMLTEITLGLH 302
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 140/352 (39%), Gaps = 55/352 (15%)
Query: 110 YFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTEL 169
Y + E + + S+ + + V +SL ++ GT++ + ++ G+ + + G ++++E
Sbjct: 80 YLQVLEEIAARWASVAVAVSV-HSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEP 138
Query: 170 HHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSK 229
GS+ L+ AT P ++IN K WI + F T+FA+
Sbjct: 139 QAGSDAAALRCAAT--PTDGGYVIN-----GSKSWITHGG-KADFYTLFAR--------T 182
Query: 230 GYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNR 289
G GV F+VP PG+ K+GL+ V + + + RI D +
Sbjct: 183 GEGSRGVSCFLVPADQ-------PGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGE 235
Query: 290 FGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQF 349
G + F+A L GR+G+A + G+ + A A+ Y+ R F
Sbjct: 236 EGQ------------GLQIAFSA----LDSGRLGIAAVATGLAQAALDEAVAYANERTAF 279
Query: 350 GPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALS 409
G RK I+D+Q L M A+ + + + + + + + A
Sbjct: 280 G--RK----IIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATD 333
Query: 410 AGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTV 461
A +K T ++ V GG GY R + I Q FEG N +
Sbjct: 334 AAMK-----VTTDAVQV----FGGVGYTRDYRVERYMREAKIMQIFEGTNQI 376
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 133/357 (37%), Gaps = 64/357 (17%)
Query: 129 GVQYSLWGGS-----VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183
GVQ ++ G S +I G + + KY + + +TE GS+V G++T A
Sbjct: 93 GVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA- 151
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ DE+IIN K WI N G A + L D K ++ FIV
Sbjct: 152 -EKKGDEYIIN-----GQKMWITN----GGKANWYFLLARSDPDPKAPANKAFTGFIV-- 199
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
PGI+I +G D + F V++P++N+L GD
Sbjct: 200 -----EADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL--IGD----------- 241
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
F +G R +A +VG+ + A A +Y+L R+ FG
Sbjct: 242 ---GAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG------------- 285
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHD----EQLVGDVHALSAGLKSYVTSY 419
+L A F A + K + ++ E G + A +
Sbjct: 286 -------KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGD 338
Query: 420 TAKSLSV-CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
A L+ + GG+G+ L D I+Q +EG + + VA + + +YK
Sbjct: 339 IANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYK 395
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 133/357 (37%), Gaps = 64/357 (17%)
Query: 129 GVQYSLWGGS-----VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183
GVQ ++ G S +I G + + KY + + +TE GS+V G++T A
Sbjct: 118 GVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA- 176
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ DE+IIN K WI N G A + L D K ++ FIV
Sbjct: 177 -EKKGDEYIINGQ-----KMWITN----GGKANWYFLLARSDPDPKAPANKAFTGFIV-- 224
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
PGI+I +G D + F V++P++N+L GD
Sbjct: 225 -----EADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL--IGD----------- 266
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
F +G R +A +VG+ + A A +Y+L R+ FG
Sbjct: 267 ---GAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG------------- 310
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHD----EQLVGDVHALSAGLKSYVTSY 419
+L A F A + K + ++ E G + A +
Sbjct: 311 -------KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGD 363
Query: 420 TAKSLSV-CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
A L+ + GG+G+ L D I+Q +EG + + VA + + +YK
Sbjct: 364 IANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYK 420
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 134/352 (38%), Gaps = 50/352 (14%)
Query: 125 GIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGC-FAMTELHHGSNVQGLQTVAT 183
G++ ++ + G + +G + K Y G + C + +TE GS+V G++T A
Sbjct: 93 GVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA- 151
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ DE+IIN K WI N G A + L D K + FIV
Sbjct: 152 -EKKGDEYIIN-----GQKMWITN----GGKANWYFLLARSDPDPKAPASKAFTGFIV-- 199
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
PG++I +G D + F VR+P++N+L G
Sbjct: 200 -----EADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEG------------ 242
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
F +G R +A +VG+ + A A +Y+L R+ FG +L
Sbjct: 243 ----AGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG-------KLL--- 288
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKS 423
+H+ + L + A A L Y D +A A K+Y +
Sbjct: 289 -AEHQGISFLLADMAMKVELARL--SYQRAAWEIDSGRRNTYYASIA--KAYAADIANQL 343
Query: 424 LSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
+ + GG+G+ L D I+Q +EG + +A + + +YK
Sbjct: 344 ATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK 395
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 132/357 (36%), Gaps = 64/357 (17%)
Query: 129 GVQYSLWGGS-----VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183
GVQ ++ G S +I G + + KY + + +TE GS+V G++T A
Sbjct: 93 GVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA- 151
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ DE+IIN K WI N G A + L D K ++ FIV
Sbjct: 152 -EKKGDEYIIN-----GQKMWITN----GGKANWYFLLARSDPDPKAPANKAFTGFIV-- 199
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
PGI+I +G D + F V++P++N+L GD
Sbjct: 200 -----EADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL--IGD----------- 241
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
F +G R +A +VG+ + A A +Y+L R+ FG
Sbjct: 242 ---GAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG------------- 285
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHD----EQLVGDVHALSAGLKSYVTSY 419
+L A F A + K + ++ E G + A +
Sbjct: 286 -------KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGD 338
Query: 420 TAKSLSV-CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
A L+ + GG+G+ L D I+Q + G + + VA + + +YK
Sbjct: 339 IANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYK 395
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 134/352 (38%), Gaps = 50/352 (14%)
Query: 125 GIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGC-FAMTELHHGSNVQGLQTVAT 183
G++ ++ + G + +G + K Y G + C + +TE GS+V G++T A
Sbjct: 83 GVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA- 141
Query: 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPI 243
+ DE+IIN K WI N G A + L D K + FIV
Sbjct: 142 -EKKGDEYIIN-----GQKMWITN----GGKANWYFLLARSDPDPKAPASKAFTGFIV-- 189
Query: 244 RDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSL 303
PG++I +G D + F VR+P++N+L G
Sbjct: 190 -----EADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEG------------ 232
Query: 304 PTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363
F +G R +A +VG+ + A A +Y+L R+ FG +L
Sbjct: 233 ----AGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG-------KLL--- 278
Query: 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKS 423
+H+ + L + A A L Y D +A A K+Y +
Sbjct: 279 -AEHQGISFLLADMAMKVELARL--SYQRAAWEIDSGRRNTYYASIA--KAYAADIANQL 333
Query: 424 LSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475
+ + GG+G+ L D I+Q +EG + +A + + +YK
Sbjct: 334 ATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK 385
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 33/240 (13%)
Query: 113 IAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHG 172
+ EA+ D +L + + SL G ++ G++ ++ + + + + G + +TE G
Sbjct: 74 MVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSG 133
Query: 173 SNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYS 232
S+ L+T A + ++ + +N K +I +V G + V A+ P + +
Sbjct: 134 SDAAALKTKA--EKVEGGWRLN-----GTKQFITQGSVAGVY-VVMARTDPPPSPERKHQ 185
Query: 233 DMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGD 292
+ AF P R G+++ K+GL D L + +P + LL G
Sbjct: 186 GISAFAFFRPER---------GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERG- 235
Query: 293 VSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352
K F L L GGR+G+A +VG+ + A A+ Y+ R+ FG P
Sbjct: 236 ---------------KGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRP 280
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 139/379 (36%), Gaps = 52/379 (13%)
Query: 85 WRQLLGLVREAGIKPFKYVAEDPA--QYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINL 142
W+QL L P +Y ++ + E + ++G+ G +L ++
Sbjct: 52 WKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRN 111
Query: 143 GTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIK 202
G + ++KY + + +Y G AM+E + GS+V ++ A + + +I+N K
Sbjct: 112 GNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA--EKKGNHYILNGN-----K 164
Query: 203 WWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGH 262
+WI N V+AK L + G+ AFIV + +PG
Sbjct: 165 FWITNGP-DADVLIVYAKTDLAAVP----ASRGITAFIV-------EKGMPGFSTSKKLD 212
Query: 263 KVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRV 322
K+G+ G + L F +IP N+L NK + L R+
Sbjct: 213 KLGMRGSNTCELIFEDCKIPAANILGHE----------------NKGVYVLMSGLDLERL 256
Query: 323 GLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFA 382
LA +G+++ I Y +R+ FG I +Q Q K+ M A
Sbjct: 257 VLAGGPLGLMQAVLDHTIPYLHVREAFGQ------KIGHFQLMQGKMADMYTRLMACRQY 310
Query: 383 TANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRF 442
N+ + E T + AG+ Y + + GG+GY
Sbjct: 311 VYNVAKACDEGHCTAKD---------CAGVILYSAECATQVALDGIQCFGGNGYINDFPM 361
Query: 443 GSLRNDHDIFQTFEGDNTV 461
G D +++ G + V
Sbjct: 362 GRFLRDAKLYEIGAGTSEV 380
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 49/268 (18%)
Query: 108 AQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMT 167
A Y I + VD L + VQ SL + G+++ + ++ + + GCF +T
Sbjct: 73 AAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLT 132
Query: 168 ELHHGSNVQG-LQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTH 226
E GS+ G ++T A + D +++N K WI N + A ++AK
Sbjct: 133 EPDGGSDPYGNMKTRARRE--GDTWVLN-----GTKMWITNGNL-AHLAVIWAK------ 178
Query: 227 DSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNL 286
D G V F+VP PG + + K+ L L VR+P
Sbjct: 179 DEGGE----VLGFLVPTDT-------PGFQAREVKRKMSLRASVTSELVLEEVRVPESLR 227
Query: 287 LNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLR 346
L + + A L L R G+A+ ++G L+ A+ ++ R
Sbjct: 228 LPKALGLK-----------------APLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSR 270
Query: 347 QQFGPPRKPEVSILDYQSQQHKLMPMLA 374
FG P + Q Q KL MLA
Sbjct: 271 STFGEP------LAKKQLVQAKLAEMLA 292
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 120/336 (35%), Gaps = 58/336 (17%)
Query: 141 NLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGA 200
+ G ++ R K+ + ++ + +TE GS+ L T A D +I+N
Sbjct: 113 SFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQ--GDHYILNGSK--- 167
Query: 201 IKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDC 260
A + G + +M T G G+ +V + PG+
Sbjct: 168 -------AFISGAGESDIYVVMCRT---GGPGPKGISCIVV-------EKGTPGLSFGKK 210
Query: 261 GHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGG 320
KVG N A+ F +P + NR G + + F + L GG
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVP---VANRIG-------------SEGQGFLIAVRGLNGG 254
Query: 321 RVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFH 380
R+ +A S+G + + + +R+QFG P + Q Q L M A
Sbjct: 255 RINIASCSLGAAHASVILTRDHLNVRKQFGEP------LASNQYLQFTLADMATRLVAAR 308
Query: 381 FATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREAC---GGHGYA 437
N E +K D AL + K + T + ++C +A GG+GY
Sbjct: 309 LMVRNAAVALQEERK--------DAVALCSMAKLFATD---ECFAICNQALQMHGGYGYL 357
Query: 438 AVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473
D + Q EG N V+ ++ LL++
Sbjct: 358 KDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 86/221 (38%), Gaps = 49/221 (22%)
Query: 162 GCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKL 221
G +TE GS+V L+T A + D +++N K +I + V F T +
Sbjct: 146 GSLGVTEPGAGSDVANLRTRAVRE--GDTYVVN-----GAKTFI-TSGVRADFVTTAVRT 197
Query: 222 MLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281
P GY GV ++ + PG E+ K+G D L F VR+
Sbjct: 198 GGP-----GYG--GVSLLVI-------DKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRV 243
Query: 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIR 341
P DNL+ G S I ++F A R+G+A + A +A
Sbjct: 244 PADNLV---------GAENSGFLQIMQQFQAE-------RLGIAVQAYATAGRALDLAKS 287
Query: 342 YSLLRQQFGPPRKPEVSILDYQSQQHKLMPM-----LASTY 377
++ R+ FG P + Q +HKL M +A TY
Sbjct: 288 WARERETFGRP------LTGRQIIRHKLAEMARQVDVACTY 322
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 119/335 (35%), Gaps = 58/335 (17%)
Query: 139 VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPND 198
+I G ++ D Y + G A+TE GS+V L+T A D D ++IN
Sbjct: 120 MIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLD--GDHYVIN---- 173
Query: 199 GAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIH 258
K +I + V A ++ + G GV +V + PG E+
Sbjct: 174 -GAKTYITSG--------VRADYVVTAARTGGPGAGGVSLIVV-------DKGTPGFEVT 217
Query: 259 DCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELV 318
K+G D L + VR+P NL+ + N FA V
Sbjct: 218 RKLDKMGWRSSDTAELSYTDVRVPVANLVG----------------SENTGFAQIAAAFV 261
Query: 319 GGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYA 378
RVGLA + + + + + R FG P ++ Q+ Q+ L M
Sbjct: 262 AERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRP------LISRQAVQNTLAGMARRIDV 315
Query: 379 FHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREAC---GGHG 435
T ++VE+ QL G+ + ++ + T+ A V +A GG G
Sbjct: 316 ARVYTRHVVER----------QLAGETNLIAEVCFAKNTAVEAGEW-VANQAVQLFGGMG 364
Query: 436 YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDL 470
Y A + D I G +L A L
Sbjct: 365 YMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 135/365 (36%), Gaps = 51/365 (13%)
Query: 106 DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFA 165
D A I E + V SL + +G+ + + + GT++ + K+ + A
Sbjct: 70 DFAYSVVINEELEKVGSSL-VGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIA 128
Query: 166 MTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPT 225
MTE GS++ + T A D D +I+N K +I N +H V K T
Sbjct: 129 MTEPGAGSDLANISTTAVKD--GDYYIVNGQ-----KTFITNG-IHADLIVVACK----T 176
Query: 226 HDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDN 285
G+ +V RD PG KVGL+ D L F ++P N
Sbjct: 177 DPQAKPPHRGISLLVVE-RDT------PGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYN 229
Query: 286 LLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLL 345
LL G K F + +L R+ +A ++ ++ ++ +Y
Sbjct: 230 LLGEEG----------------KGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQ 273
Query: 346 RQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDV 405
R FG + ++Q+ Q +L M ++E++ K Q+V +V
Sbjct: 274 RTAFGK------RVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGK-----QIVTEV 322
Query: 406 HALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQ 465
+ K ++T + + + GG+GY D + + G N ++
Sbjct: 323 ----SMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTI 378
Query: 466 VAGDL 470
+A L
Sbjct: 379 IARQL 383
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 253 PGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAA 312
PG+ + G + L VR+P +L G +SLP + AA
Sbjct: 173 PGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG---------ASLPML---VAA 220
Query: 313 TLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352
+L GR +A+ VG+L+ T A+ ++ R+QFG P
Sbjct: 221 SLAY---GRKSVAWGCVGILRACRTAAVAHARTREQFGRP 257
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 39/214 (18%)
Query: 143 GTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIK 202
G+++ ++ + + + D F MTE S+ AT DE +IN K
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASS-DATNMAATAVVEGDEVVIN-----GRK 178
Query: 203 WWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIR--DMKTHQTLPGIEIHD- 259
WW +F L P M +VP+ + + LP + +D
Sbjct: 179 WWSTGVGHPDCKVIIFMGLTDPNAHRYARHSM----VLVPMDTPGITVERMLPTMGFYDE 234
Query: 260 -CGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELV 318
GH G + F +VR+P D + G K F G L
Sbjct: 235 PGGH---------GVVSFDNVRLPADAFIAGPG----------------KGFEIAQGRLG 269
Query: 319 GGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352
GRV A +G+ ++A A R L R FG P
Sbjct: 270 PGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKP 303
>pdb|2OVI|A Chain A, Structure Of The Heme Binding Protein Chux
pdb|2OVI|B Chain B, Structure Of The Heme Binding Protein Chux
pdb|2OVI|C Chain C, Structure Of The Heme Binding Protein Chux
pdb|2OVI|D Chain D, Structure Of The Heme Binding Protein Chux
Length = 164
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 42 CAVIWLYERKAQGDTRESVEYFNSRPDLQTPVEILKDDHRELCWRQL 88
C I L ERK G S+ +FN + + +DDHR+L Q+
Sbjct: 104 CTHIALIERKFMGMDTASILFFNKEGSAMLKIFLGRDDHRQLLSEQV 150
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 134 LWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFII 193
+ G V TK+ + DGI PG T + G V + + + +F I
Sbjct: 149 IVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGI 208
Query: 194 NTPNDGAIKWW--IGNAAVHGKFATVFAKLMLPTHDSKGYSDM 234
DG I++ IG A G + + ++ T +S G ++
Sbjct: 209 PIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKEL 251
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 584 DPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVR 636
D + A+KL D IWND+G+ NVD K L YL+ VR
Sbjct: 145 DLTKEEAIKLASDAIQAG-IWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 584 DPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVR 636
D + A+KL D IWND+G+ NVD K L YL+ VR
Sbjct: 174 DLTKEEAIKLASDAIQAG-IWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 225
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 584 DPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVR 636
D + A+KL D IWND+G+ NVD K L YL+ VR
Sbjct: 145 DLTKEEAIKLASDAIQAG-IWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 139 VINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFI 192
V+ LG KH Y+ + NL + +H G+N+ G Q V +P+ +FI
Sbjct: 205 VVILG--KHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFI 256
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 134 LWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFII 193
+ G V TK+ + DGI PG T + G V + + + +F I
Sbjct: 188 IVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGI 247
Query: 194 NTPNDGAIKWW--IGNAAVHGKFATVFAKLMLPTHDSKGYSDM 234
DG I++ IG A G + + ++ T +S G ++
Sbjct: 248 PIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKEL 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,742,143
Number of Sequences: 62578
Number of extensions: 885569
Number of successful extensions: 1892
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1783
Number of HSP's gapped (non-prelim): 52
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)