Query 048624
Match_columns 673
No_of_seqs 356 out of 2303
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02636 acyl-coenzyme A oxida 100.0 6E-119 1E-123 1020.7 69.5 665 7-673 5-686 (686)
2 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 4E-113 9E-118 887.5 50.1 616 41-671 31-658 (661)
3 PLN02312 acyl-CoA oxidase 100.0 3E-110 6E-115 947.1 65.3 633 11-666 2-677 (680)
4 KOG0136 Acyl-CoA oxidase [Lipi 100.0 6E-108 1E-112 870.1 43.7 611 32-671 13-641 (670)
5 cd01150 AXO Peroxisomal acyl-C 100.0 3E-106 7E-111 913.2 58.6 594 34-671 5-608 (610)
6 PTZ00460 acyl-CoA dehydrogenas 100.0 1E-104 2E-109 898.4 59.9 603 31-671 3-619 (646)
7 PLN02443 acyl-coenzyme A oxida 100.0 3E-104 7E-109 895.9 58.0 608 33-671 8-633 (664)
8 KOG0140 Medium-chain acyl-CoA 100.0 8.8E-66 1.9E-70 499.8 23.9 377 46-475 25-407 (408)
9 KOG0141 Isovaleryl-CoA dehydro 100.0 9.3E-66 2E-70 499.8 19.8 380 41-473 33-420 (421)
10 KOG0139 Short-chain acyl-CoA d 100.0 9.2E-66 2E-70 508.8 18.3 357 48-460 36-398 (398)
11 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.4E-54 2.9E-59 471.6 36.0 367 45-472 9-382 (386)
12 PRK09463 fadE acyl-CoA dehydro 100.0 9.8E-54 2.1E-58 487.0 44.5 371 49-466 79-466 (777)
13 PRK03354 crotonobetainyl-CoA d 100.0 5.4E-54 1.2E-58 465.7 35.2 372 45-474 1-379 (380)
14 cd01161 VLCAD Very long chain 100.0 8.7E-54 1.9E-58 468.4 36.1 381 42-473 20-407 (409)
15 PRK12341 putative acyl-CoA deh 100.0 1.3E-53 2.8E-58 463.1 35.1 371 45-473 1-379 (381)
16 cd01162 IBD Isobutyryl-CoA deh 100.0 2.8E-53 6.2E-58 459.6 36.7 367 49-472 1-374 (375)
17 TIGR03203 pimD_small pimeloyl- 100.0 1E-53 2.2E-58 462.1 32.8 366 46-468 1-374 (378)
18 PLN02519 isovaleryl-CoA dehydr 100.0 3.8E-53 8.1E-58 462.4 35.3 375 44-473 21-403 (404)
19 PTZ00461 isovaleryl-CoA dehydr 100.0 6.1E-53 1.3E-57 461.7 34.7 370 44-473 31-408 (410)
20 cd01157 MCAD Medium chain acyl 100.0 1E-52 2.2E-57 456.0 35.2 370 49-472 1-377 (378)
21 PLN02526 acyl-coenzyme A oxida 100.0 1.2E-52 2.7E-57 459.1 35.6 369 45-473 25-399 (412)
22 cd01156 IVD Isovaleryl-CoA deh 100.0 1.8E-52 4E-57 453.7 35.6 368 49-472 2-376 (376)
23 cd01160 LCAD Long chain acyl-C 100.0 2.4E-52 5.1E-57 452.2 35.7 364 51-470 1-371 (372)
24 PRK13026 acyl-CoA dehydrogenas 100.0 3.2E-51 6.9E-56 464.5 46.4 340 84-465 109-464 (774)
25 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 4.1E-52 8.9E-57 450.0 34.9 362 49-468 1-369 (372)
26 KOG0137 Very-long-chain acyl-C 100.0 6E-51 1.3E-55 428.6 33.7 344 85-472 111-460 (634)
27 cd01158 SCAD_SBCAD Short chain 100.0 1.2E-50 2.7E-55 439.0 35.4 366 51-472 1-373 (373)
28 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 5.9E-50 1.3E-54 436.2 35.5 340 85-471 43-393 (394)
29 TIGR03204 pimC_large pimeloyl- 100.0 8.5E-50 1.8E-54 434.3 34.0 368 46-471 1-393 (395)
30 KOG0138 Glutaryl-CoA dehydroge 100.0 8.6E-51 1.9E-55 393.9 23.0 374 41-472 47-426 (432)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.8E-49 3.8E-54 432.9 34.3 374 46-473 2-389 (393)
32 PTZ00456 acyl-CoA dehydrogenas 100.0 6.1E-46 1.3E-50 419.2 51.3 349 86-471 102-479 (622)
33 PLN02876 acyl-CoA dehydrogenas 100.0 6.1E-48 1.3E-52 454.3 35.3 379 46-473 399-819 (822)
34 cd01153 ACAD_fadE5 Putative ac 100.0 7.6E-47 1.6E-51 413.2 35.0 341 86-465 39-400 (407)
35 cd01152 ACAD_fadE6_17_26 Putat 100.0 5.3E-47 1.1E-51 411.2 32.4 360 51-471 1-379 (380)
36 cd01154 AidB Proteins involved 100.0 2.8E-46 6.2E-51 409.1 35.8 339 86-471 68-417 (418)
37 PRK11561 isovaleryl CoA dehydr 100.0 5.7E-45 1.2E-49 402.5 34.9 336 85-472 88-441 (538)
38 cd01163 DszC Dibenzothiophene 100.0 4.7E-44 1E-48 387.9 31.2 345 78-471 18-372 (377)
39 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.2E-43 2.7E-48 377.3 30.9 285 134-468 43-327 (327)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 6.2E-40 1.3E-44 360.0 47.1 299 86-463 53-362 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 6.6E-40 1.4E-44 354.5 25.5 340 78-472 18-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 1.1E-38 2.5E-43 305.3 17.5 341 86-474 30-384 (392)
43 PF01756 ACOX: Acyl-CoA oxidas 100.0 3.1E-37 6.7E-42 299.9 14.5 159 513-671 1-162 (187)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 7.1E-21 1.5E-25 178.5 16.5 150 307-471 1-150 (150)
45 TIGR02309 HpaB-1 4-hydroxyphen 99.9 9.6E-20 2.1E-24 200.2 27.3 249 140-438 119-391 (477)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.4 2.1E-12 4.6E-17 118.8 11.8 130 322-458 1-132 (134)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 4.3E-13 9.2E-18 101.3 5.7 51 163-221 1-51 (52)
48 PF02771 Acyl-CoA_dh_N: Acyl-C 99.2 2.9E-11 6.2E-16 107.6 4.7 106 50-159 1-113 (113)
49 COG2368 Aromatic ring hydroxyl 98.6 9.6E-06 2.1E-10 86.7 21.7 239 142-437 125-398 (493)
50 TIGR02310 HpaB-2 4-hydroxyphen 98.5 1.3E-05 2.9E-10 88.6 21.7 239 147-434 137-399 (519)
51 PF14749 Acyl-CoA_ox_N: Acyl-c 98.4 5E-07 1.1E-11 81.9 7.0 116 41-161 1-125 (125)
52 PF11794 HpaB_N: 4-hydroxyphen 97.3 0.0015 3.2E-08 66.4 9.7 122 147-287 124-263 (264)
53 PF03241 HpaB: 4-hydroxyphenyl 85.4 20 0.00043 35.3 13.2 75 359-437 44-118 (205)
54 PTZ00457 acyl-CoA dehydrogenas 74.5 23 0.00051 40.0 10.8 71 359-438 433-503 (520)
55 KOG0137 Very-long-chain acyl-C 59.6 99 0.0021 35.0 11.4 67 359-433 537-603 (634)
56 PF10799 YliH: Biofilm formati 37.3 40 0.00086 29.2 3.2 36 613-648 31-66 (127)
57 PF02607 B12-binding_2: B12 bi 33.6 1.2E+02 0.0026 24.3 5.6 31 607-637 49-79 (79)
58 PRK12302 bssR biofilm formatio 30.3 57 0.0012 27.9 3.1 37 612-648 30-66 (127)
No 1
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.8e-119 Score=1020.73 Aligned_cols=665 Identities=85% Similarity=1.319 Sum_probs=599.7
Q ss_pred CCCCcccccchHHHHHHHHHHHhhcCCCCcc-------------C-cC-chHhhhhhcCCCHHHHHH-HHHHHhcCCCCC
Q 048624 7 SPNHTAEDESQAVVTRRIQRLSLHLMAPSAQ-------------N-YD-LCAVIWLYERKAQGDTRE-SVEYFNSRPDLQ 70 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~-~~~~m~~~l~~e~~~~~~-~~~~~~~~~~~~ 70 (673)
+.++.+++..+ .++|||++++.||.+.... . .+ ++++|...+++++..+++ +++++.++|.|.
T Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~ 83 (686)
T PLN02636 5 NQNPRAEDDGE-IAARRIQRLSLHLSPVPLPKEEQLSRLVCARSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQ 83 (686)
T ss_pred ccCCccccchh-HHHHHHHHHHHhcCcCCCCCcccCCcccccccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCcccc
Confidence 44556666666 6779999999998865421 1 11 667899999999988888 889999888774
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHh
Q 048624 71 TPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAEDPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDK 150 (673)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~ 150 (673)
.+...++++.++.+.+++++.+.+.|++++.+|++++.++..+.|++++.|++++..+++|+++++++|..+||++|+++
T Consensus 84 ~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~ 163 (686)
T PLN02636 84 TPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVEDPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDK 163 (686)
T ss_pred CCchhhHHHhhhhHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHH
Confidence 45566677777777689999999999999999999999999999999999999888889999999999999999999999
Q ss_pred HHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCC
Q 048624 151 YYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKG 230 (673)
Q Consensus 151 ~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~ 230 (673)
|||++.+|+++||||+|||+||||+.+++|||++|+++|+|||||||++|+||||||++..||+++|+||++.++++..+
T Consensus 164 ~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~ 243 (686)
T PLN02636 164 YFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKG 243 (686)
T ss_pred HHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccC
Confidence 99999999999999999999999999999999999888999999999999999999998459999999999754321111
Q ss_pred CCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHH
Q 048624 231 YSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRF 310 (673)
Q Consensus 231 ~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~ 310 (673)
++++|+++||||+|+.++|+++|||+|+++++|+|+++++|+.|.|||||||++||||++++|++||+|+++++++++||
T Consensus 244 ~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf 323 (686)
T PLN02636 244 VSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRF 323 (686)
T ss_pred CCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHH
Confidence 12459999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 311 AATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKY 390 (673)
Q Consensus 311 ~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~ 390 (673)
..++..|..+|+.+++.++|++++|+++|++|+.+|+|||+|+++|.||++||.+|++|++|++.+++++++.+.+.+.+
T Consensus 324 ~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~ 403 (686)
T PLN02636 324 AATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERY 403 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHH
Q 048624 391 SEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDL 470 (673)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~l 470 (673)
++..+.++.....+.|..++++|+++++.+.+++++|+|+|||+||+.++++++++||+++.+|+||+|+|+++++|+.|
T Consensus 404 ~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~l 483 (686)
T PLN02636 404 SEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADL 483 (686)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHH
Confidence 88776654333457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHhhhhhhcCCCCCcccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh
Q 048624 471 LKQYKEKFQGGPLTVTWNYLRESMNAYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFG 550 (673)
Q Consensus 471 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~ 550 (673)
|+.|++.++++++.+++.||.+.....+..+++....+....+|.|+++++++|++|+.++++.++.++++..++.+.++
T Consensus 484 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 563 (686)
T PLN02636 484 LKQYKEKFQGGTLSVTWNYLRESMNTYLSQPNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFG 563 (686)
T ss_pred HHHHHHHhccCCCchHHHHHHhhhhhhhcccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 99999988888888899999765433333333332223345679999999999999999999999999987555566799
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHH
Q 048624 551 AWNRCLNHLLTLAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEY 630 (673)
Q Consensus 551 a~n~~~~~~~~~a~A~~e~~~l~~f~~~i~~~~~~~~~~vL~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~ 630 (673)
+||.|+++++++|+||+++++++.|+++|+++++++++++|++||.||+|+.|++|+|||+++||||++|++.|++.+.+
T Consensus 564 awn~~~~~l~~~a~ah~~~~~~~~f~~~v~~~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~ 643 (686)
T PLN02636 564 AWNRCLNHLLTLAESHIESVILAKFIEAVERCPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEY 643 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHhhhcCCCCcccccCcccc-CchHHHHHHHhhCC
Q 048624 631 LSFQVRNIAGELIDAFDLPDYVTRAPIAR-QSDAYAYYTQIVGF 673 (673)
Q Consensus 631 l~~~lrp~a~~Lvdaf~~pd~~l~s~i~~-dg~~Ye~~~~~~~~ 673 (673)
||.+|||||+.|||+|+|||++|+||||+ ||+ |..+-+.|||
T Consensus 644 l~~~lrp~av~LvDaF~~~d~~L~s~lg~~dg~-~~~~~~~~~~ 686 (686)
T PLN02636 644 LSFQVRNVAKELVDAFGLPDHVTRAPIAMQSGA-YSEYTQYVGF 686 (686)
T ss_pred HHHHHhHhHHHHhcccCCChhhhCcchhccCCc-HHHhhhhcCC
Confidence 99999999999999999999999999999 886 8889999998
No 2
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-113 Score=887.51 Aligned_cols=616 Identities=47% Similarity=0.735 Sum_probs=562.8
Q ss_pred chHhhhhhcCCCH--HHHHH-HHHHHhcCC-CCCC-CccCCHHHHHHHHHHHHHHHHHHcCCCCccccCCCH---HHHHH
Q 048624 41 LCAVIWLYERKAQ--GDTRE-SVEYFNSRP-DLQT-PVEILKDDHRELCWRQLLGLVREAGIKPFKYVAEDP---AQYFA 112 (673)
Q Consensus 41 ~~~~m~~~l~~e~--~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~~~---~~~~~ 112 (673)
++++|...+++|+ -+++. +.+.++++| +|.. .+.+++|+++++...++++.+ +.|.+....-+.++ .....
T Consensus 31 dwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~~l~-~~gv~~~~~~~~~~~~~~k~~a 109 (661)
T KOG0135|consen 31 DWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIKRLV-ELGVFKFWLVEDGPEAELKKFA 109 (661)
T ss_pred CHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHHHHH-HhccCcceeecCchHHHHHHHH
Confidence 7889999999885 55666 999999999 4443 456889999999989988877 44888777666644 47889
Q ss_pred HHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEE
Q 048624 113 IAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFI 192 (673)
Q Consensus 113 ~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~v 192 (673)
++|.+|.+|.|++..+++|+.+|+.++..+||+.+++ |+.++.+.+++||||+||++||||+.+|+|||||||.+++||
T Consensus 110 l~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfV 188 (661)
T KOG0135|consen 110 LTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFV 188 (661)
T ss_pred HHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCce
Q 048624 193 INTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNG 272 (673)
Q Consensus 193 LntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~ 272 (673)
||||+.++.|+||+|++++|+|++|+|++..+|.++ |+|.||||+||++|+..+|||+|+|++.|.|++|+|||
T Consensus 189 inTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~------G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG 262 (661)
T KOG0135|consen 189 INTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNH------GLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNG 262 (661)
T ss_pred ecCCcHHHHHHHhccccccceEEEEEEEeeecCccC------ceeeEEEEeecccccCCCCCceecccccccccccccCc
Confidence 999999999999999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred eEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 048624 273 ALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352 (673)
Q Consensus 273 ~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 352 (673)
.++|+|||||++|+|+++++|++||+|++++++++++|.+.++.+..+|++++..++|.++-+++||+||+..|+|||++
T Consensus 263 ~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~ 342 (661)
T KOG0135|consen 263 FLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPT 342 (661)
T ss_pred eEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048624 353 RK-PEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDE-QLVGDVHALSAGLKSYVTSYTAKSLSVCREA 430 (673)
Q Consensus 353 ~~-~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~ 430 (673)
.+ +|+||++||.+|+||.|+++.+++++++.+.+...+.+.....+. ...+++|++++++|.++||...+++++||++
T Consensus 343 ~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREA 422 (661)
T KOG0135|consen 343 KNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREA 422 (661)
T ss_pred CCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHH
Confidence 65 999999999999999999999999999999999888876654321 1148999999999999999999999999999
Q ss_pred hCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhhhhcCCCCCcccccC
Q 048624 431 CGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMNAYLSQPNPVTARWEG 510 (673)
Q Consensus 431 ~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 510 (673)
||||||..+|+++.+..|.++++||||||+||+||+++.||++|.+..+.++++ +..++... .+.++|....+..
T Consensus 423 cGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~~e~p~~-~~~~ln~~----~s~~~~~~~s~~~ 497 (661)
T KOG0135|consen 423 CGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQKKETPLS-FVGFLNEY----PSSPDPVLASQLV 497 (661)
T ss_pred hccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhhccCCch-HHHHHhhc----cccCCcccccccc
Confidence 999999999999999999999999999999999999999999999987777654 55555442 3445554444555
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 048624 511 EEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNH-LLTLAESHIESVILAKFIEAVQNCPDPSSRA 589 (673)
Q Consensus 511 ~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~a~n~~~~~-~~~~a~A~~e~~~l~~f~~~i~~~~~~~~~~ 589 (673)
.+.+.+++++...+..|...|++..+...++..++.+.|++||+|+++ +.++|.||+|..+++.|++++.++++++++.
T Consensus 498 ~d~l~~~~f~~~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~h~~k~~~~s~k~ 577 (661)
T KOG0135|consen 498 SDTLRSSQFQLCYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLDHVHKLPDPSVKA 577 (661)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 677888888886666666667777777777788889999999999974 6679999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccCcccc-CchHHHHHH
Q 048624 590 ALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR-QSDAYAYYT 668 (673)
Q Consensus 590 vL~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s~i~~-dg~~Ye~~~ 668 (673)
||+.++++|+|+.|++|++.|+..||++++++..+++.+..+|.+|||+|+.|||+|++||++|+||||+ ||..|+ |
T Consensus 578 vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc~elr~~A~alvdsi~ppDf~l~SpIa~~dg~~y~--~ 655 (661)
T KOG0135|consen 578 VLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLCAELRPVAVALVDSIAPPDFVLHSPIARADGEAYE--W 655 (661)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHHHhccHHHHHHHhhcCCchHhhcChhhhcchHHHH--H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999 5
Q ss_pred Hhh
Q 048624 669 QIV 671 (673)
Q Consensus 669 ~~~ 671 (673)
.+|
T Consensus 656 ~~~ 658 (661)
T KOG0135|consen 656 SEV 658 (661)
T ss_pred HHH
Confidence 443
No 3
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3e-110 Score=947.06 Aligned_cols=633 Identities=36% Similarity=0.567 Sum_probs=558.4
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCc-----------------c---C-cCchHhhhhhcCCCHHHHHH-HHHHHhcCCC
Q 048624 11 TAEDESQAVVTRRIQRLSLHLMAPSA-----------------Q---N-YDLCAVIWLYERKAQGDTRE-SVEYFNSRPD 68 (673)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---~-~~~~~~m~~~l~~e~~~~~~-~~~~~~~~~~ 68 (673)
..+.++. .++||++++++||.++.. . . ..++.+|...|.+++..+++ +.+++.++|+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~ 80 (680)
T PLN02312 2 MAGMSPS-AAARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDL 80 (680)
T ss_pred CCccchh-HHHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCcc
Confidence 4455555 788999999999876211 0 1 11667899999887755555 9999999998
Q ss_pred CC-----------CCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC---CHHHHHHHHHHHhccchhhHHHHHHhHhh
Q 048624 69 LQ-----------TPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE---DPAQYFAIAEAVGSVDMSLGIKMGVQYSL 134 (673)
Q Consensus 69 ~~-----------~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~---~~~~~~~~~e~la~~~~s~~~~~~~h~~l 134 (673)
|. +.+.+++++.++.+ .+.++.+.+.|+.+..+|++ ++...+.++|++++.|++++..+++|+++
T Consensus 81 f~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~l~~~g~~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l 159 (680)
T PLN02312 81 FNSKRRGGRVFVSPDYNQTMEQQREIT-MKRILYLLERGVFRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFL 159 (680)
T ss_pred ccccccccccccCCccCCCHHHHHHhH-HHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhh
Confidence 74 23457888888877 67778888999999999864 55677888999999999888888999999
Q ss_pred HHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcE
Q 048624 135 WGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKF 214 (673)
Q Consensus 135 ~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~ 214 (673)
++.+|..+||++|+++|||++.+|+++||||+|||+||||+.+++|||++|+++|+|||||||++|+|+||+|+++.|++
T Consensus 160 ~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~ 239 (680)
T PLN02312 160 WGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATH 239 (680)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCE
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999449999
Q ss_pred EEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCccc
Q 048624 215 ATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVS 294 (673)
Q Consensus 215 ~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~ 294 (673)
++|+||+..+++++ |+++|+||+||.++ +++|||+|+++++|+|+++++|++|.|||||||++||||++++|+
T Consensus 240 ~vV~Arl~~~~~~~------Gv~~FlV~ird~~~-~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~ 312 (680)
T PLN02312 240 TIVFSQLHINGKNE------GVHAFIAQIRDQDG-NICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVS 312 (680)
T ss_pred EEEEEEECCCCCCC------CeEEEEEeecCCCC-CCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeC
Confidence 99999998766655 99999999988654 789999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCCCcccccccHHHHHHHHHHH
Q 048624 295 RDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGP-PRKPEVSILDYQSQQHKLMPML 373 (673)
Q Consensus 295 ~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~-~~~~e~~i~~~q~vq~~La~~~ 373 (673)
++|.|++++++++.||..++..|..+|+.+++.++|++++|+++|++|+++|+|||. |+++|.||++||++|+||++|+
T Consensus 313 ~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~l 392 (680)
T PLN02312 313 PDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLL 392 (680)
T ss_pred CCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHH
Confidence 999999999888999999999999999999999999999999999999999999996 6678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhcccccccccc
Q 048624 374 ASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQ 453 (673)
Q Consensus 374 a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~ 453 (673)
+.++++.+...++.+.+...... ...+.+..++++|+++++.+.+++++|+|+|||+||+.++++++++||+++.+
T Consensus 393 a~~~a~~~~a~~l~~~~~~~~~~----~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~ 468 (680)
T PLN02312 393 AKTYAMSFAANDLKMIYVKRTPE----SNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQS 468 (680)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhhe
Confidence 99999887776666555332111 12568899999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHHHHHHHHHhcCCC-Cchh-hHHHHHhhhhhhcCCCCCcccccCcCCCCCHHHHHHHHHHHHHHH
Q 048624 454 TFEGDNTVLLQQVAGDLLKQYKEKFQGGP-LTVT-WNYLRESMNAYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRL 531 (673)
Q Consensus 454 ~~eG~~~vl~~~ia~~ll~~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l 531 (673)
|+||+|+||++++|+.+++.|.+.+++++ +.+. +.|+.. +.+....+.+..+|.|+++++++|++|+.++
T Consensus 469 t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~ 540 (680)
T PLN02312 469 TFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMNG--------PRPVIPTQLTSSTLRDSQFQLNLFCLRERDL 540 (680)
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhcc--------ccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777655 4443 666632 1121112224568999999999999999999
Q ss_pred HHHHHHHHHh-hcCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhHhhhhccccc
Q 048624 532 LQSVAVRLRK-HSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALNRIWNDIGTY 610 (673)
Q Consensus 532 ~~~~~~~l~~-~~~~~~~~~a~n~~~~~~~~~a~A~~e~~~l~~f~~~i~~~~~~~~~~vL~~L~~Lyal~~i~~~~~~~ 610 (673)
+.++++++++ .+++.+.+++||.+.+.++++|+||+++++++.|+++|+++++++++++|++||+||+|+.|+++ ++|
T Consensus 541 ~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~~F~~~i~~~~~~~~~~vL~~L~~Lyal~~i~~~-~~f 619 (680)
T PLN02312 541 LERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQTFLDAEANLPTGSLKDVLGLLRSLYVLISLDED-PSF 619 (680)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHhh-HHH
Confidence 9999999987 56778889999999999999999999999999999999988899999999999999999999766 699
Q ss_pred cccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccCcccc---CchHHHH
Q 048624 611 RNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR---QSDAYAY 666 (673)
Q Consensus 611 ~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s~i~~---dg~~Ye~ 666 (673)
+++||||++|++.|++.+.+||.+|||||+.|||||+|||++|+ ||+. |++.|+.
T Consensus 620 l~~~~ls~~~~~~i~~~i~~L~~~lrp~Av~LvDaF~~~d~~L~-pi~~~~~~~~~~~~ 677 (680)
T PLN02312 620 LRYGYLSPDNVALVRKEVAKLCGELRPHALALVSSFGIPDAFLS-PIAFDWIEANSWSS 677 (680)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhHhHHHHhcccCCChHhcC-chhhhHHhhhhhcc
Confidence 99999999999999999999999999999999999999999997 9999 5676654
No 4
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-108 Score=870.11 Aligned_cols=611 Identities=33% Similarity=0.475 Sum_probs=543.2
Q ss_pred CCCCccCcC-chHhhhhhcCCCH---HHHHHHHHHHhcCCCCCC---CccCCHHHHHHHHHHHHHHH---HHHcCCCCcc
Q 048624 32 MAPSAQNYD-LCAVIWLYERKAQ---GDTRESVEYFNSRPDLQT---PVEILKDDHRELCWRQLLGL---VREAGIKPFK 101 (673)
Q Consensus 32 ~~~~~~~~~-~~~~m~~~l~~e~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---l~e~Gl~~~~ 101 (673)
+-.||..++ ++++|...+.+.+ +..|++.+.+.++|.|.. ...++++|......+++... +.+.....-.
T Consensus 13 l~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el~~~~d~ 92 (670)
T KOG0136|consen 13 LQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMRELQDNTDN 92 (670)
T ss_pred HHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334555554 8999999887654 444559999999998873 23467777666555554433 3344443111
Q ss_pred ccCCCHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeE
Q 048624 102 YVAEDPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTV 181 (673)
Q Consensus 102 ~p~~~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~Tt 181 (673)
.++ ...... .....-+.++.+|++||.++|...||+||.++||++..+.+++||||+||+|||||+++++||
T Consensus 93 ~~~----~~~~~~----~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~ 164 (670)
T KOG0136|consen 93 ENK----LLGLLA----RVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETT 164 (670)
T ss_pred hhh----hhHHHh----hccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhccccccccccee
Confidence 111 111222 233334566788999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCC
Q 048624 182 ATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCG 261 (673)
Q Consensus 182 A~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~ 261 (673)
|+||+.+++|||||||.++.|||+++.++.|+|++|.|+++.+|+++ |++.|+||+||.+||.|+|||+|+|++
T Consensus 165 AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~------G~h~FiV~lRd~~th~pL~Gi~iGDIG 238 (670)
T KOG0136|consen 165 ATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCY------GPHPFIVQLRDEDTHKPLPGITVGDIG 238 (670)
T ss_pred eeecCCcceEEecCCCcceecccCCccccccchheeeeeeeeccccc------ccceeEEEccCccccCCCCCCeecCCC
Confidence 99999999999999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred CCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 262 HKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIR 341 (673)
Q Consensus 262 ~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ 341 (673)
+|||++|+|||++.|||||||++|||+++.+|.+||+|+.|..+ ...+.+|...|..++....-.+..|++||+|
T Consensus 239 ~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~-----~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtR 313 (670)
T KOG0136|consen 239 PKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHP-----KLGYGTMVYVRSLMVMDQARFLAKAATIATR 313 (670)
T ss_pred ccccccCCccceeeecceeechHhhhhhhheecCCCccccCCcc-----ccceeeeEEEeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998633 3668899999999999999999999999999
Q ss_pred HhhhccccCC-CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcchhhhHHHHHHhHHHHHH
Q 048624 342 YSLLRQQFGP-PRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKK---THDEQLVGDVHALSAGLKSYVT 417 (673)
Q Consensus 342 ya~~R~qfg~-~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~K~~at 417 (673)
|+.+|+|+.. |+++|.+|+|||++|+||.|.+|..||++++..++.+.+....+ .++.+.++++|++++++|+++|
T Consensus 314 YSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T 393 (670)
T KOG0136|consen 314 YSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVT 393 (670)
T ss_pred HHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhh
Confidence 9999999986 89999999999999999999999999999999999888876554 5777888999999999999999
Q ss_pred HHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhhh
Q 048624 418 SYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMNAY 497 (673)
Q Consensus 418 ~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (673)
+.+.+.++.||++||||||+..++++.+|-.+.+.|||||+|.||+.|+||+|+|.|.+...|+++.+++.|+.....
T Consensus 394 ~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~-- 471 (670)
T KOG0136|consen 394 WDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASAL-- 471 (670)
T ss_pred hhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976421
Q ss_pred hcCCCCCcccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 048624 498 LSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRK-HSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFI 576 (673)
Q Consensus 498 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~-~~~~~~~~~a~n~~~~~~~~~a~A~~e~~~l~~f~ 576 (673)
.| ..+....++.+ + ++++|++++.+++..+++++.+ ..++.+...|||.++++++++|++|+++++++.|+
T Consensus 472 ----~~--~~~~~~~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~ 543 (670)
T KOG0136|consen 472 ----KP--QLISGAGDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFL 543 (670)
T ss_pred ----Cc--cccccccchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11223466666 5 9999999999999999999998 67788999999999999999999999999999999
Q ss_pred HHHHc-CCCccHHHHHHHHHHHHhhHhhhhcccccccc-CcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCccccc
Q 048624 577 EAVQN-CPDPSSRAALKLVCDLYALNRIWNDIGTYRNV-DYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTR 654 (673)
Q Consensus 577 ~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~~~~~~~~-~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~ 654 (673)
+++++ ..++.+++||+.||.||+++.|.+++|.|+.. +|+|+.|++.++.++.++++.+|||||+|||+|+|+|..|+
T Consensus 544 ~kv~~~~~~~~vk~vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpnAVaLvDsFd~~D~~L~ 623 (670)
T KOG0136|consen 544 EKVEKHISDPAVKEVLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPNAVALVDSFDFHDRELN 623 (670)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcCeEEeecccccchhhhc
Confidence 99998 67889999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred Ccccc-CchHHHHHHHhh
Q 048624 655 APIAR-QSDAYAYYTQIV 671 (673)
Q Consensus 655 s~i~~-dg~~Ye~~~~~~ 671 (673)
|+||| ||+|||+||+|.
T Consensus 624 SvLGryDGnVYenLFewA 641 (670)
T KOG0136|consen 624 SVLGRYDGNVYENLFEWA 641 (670)
T ss_pred ccccccCCchhHHHHHHH
Confidence 99999 999999999984
No 5
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=3.1e-106 Score=913.15 Aligned_cols=594 Identities=46% Similarity=0.717 Sum_probs=525.4
Q ss_pred CCccCcC-chHhhhhhcCCCH---HHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCCCHHH
Q 048624 34 PSAQNYD-LCAVIWLYERKAQ---GDTRESVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAEDPAQ 109 (673)
Q Consensus 34 ~~~~~~~-~~~~m~~~l~~e~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~~~~~ 109 (673)
.+|+..+ ++++|...|.+.+ +.++++.+++.++|+|... .......++....+..+...+...........++.+
T Consensus 5 ~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (610)
T cd01150 5 KERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRE-LPSKHLSREELYEELKRKAKTDVERMGELMADDPEK 83 (610)
T ss_pred HhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCcccccc-CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 4555554 8889999998733 3344588999999988653 111122222222332222211111111111247888
Q ss_pred HHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCC
Q 048624 110 YFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKD 189 (673)
Q Consensus 110 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~ 189 (673)
...+.|++++.|++++.++++|+++++++|..+||++|+++|||++.+|+++||||+|||+||||+.+++|||++|++++
T Consensus 84 ~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~ 163 (610)
T cd01150 84 MLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQ 163 (610)
T ss_pred HHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCC
Confidence 88999999999999888888999999999999999999999999999999999999999999999999999999997779
Q ss_pred EEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCC
Q 048624 190 EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGV 269 (673)
Q Consensus 190 ~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~ 269 (673)
+||||||+++|+|+||+|++..|++++|+||+..+++++ |+++|+||+||.++|++.|||+++++++|+|++++
T Consensus 164 efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~------Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~ 237 (610)
T cd01150 164 EFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNH------GLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGV 237 (610)
T ss_pred eEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCC------CeEEEEEeccccccCCCCCCeEEeecccccCCCCC
Confidence 999999999999999999874699999999998766665 99999999999999999999999999999999999
Q ss_pred CceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 048624 270 DNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQF 349 (673)
Q Consensus 270 ~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qf 349 (673)
+|+.|.|||||||++|+||++++|++||.|++++++++.||..++..+..+|+.+++.++|++++|+++|++|+..|+||
T Consensus 238 dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qf 317 (610)
T cd01150 238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQF 317 (610)
T ss_pred CeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeec
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCcchhhhHHHHHHhHHHHHHHHHHHHHH
Q 048624 350 GPP-RKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEM---KKTHDEQLVGDVHALSAGLKSYVTSYTAKSLS 425 (673)
Q Consensus 350 g~~-~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~ 425 (673)
|+| +++|.||++||++|+||+++++.+++++++.+.+.+.+.+. .++++....++.|..++++|+++++.+.++++
T Consensus 318 g~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~ 397 (610)
T cd01150 318 GPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQ 397 (610)
T ss_pred CCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 78899999999999999999999999998888887766553 33343333467889999999999999999999
Q ss_pred HHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhhhhcCCCCCc
Q 048624 426 VCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMNAYLSQPNPVT 505 (673)
Q Consensus 426 ~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 505 (673)
+|+|+|||+||+.++++++++||+++.+|+||+|+||++++|+.+++.|++.++
T Consensus 398 ~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~-------------------------- 451 (610)
T cd01150 398 ECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS-------------------------- 451 (610)
T ss_pred HHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC--------------------------
Confidence 999999999999999999999999999999999999999999999988753211
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 048624 506 ARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRK-HSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVQNCPD 584 (673)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~-~~~~~~~~~a~n~~~~~~~~~a~A~~e~~~l~~f~~~i~~~~~ 584 (673)
+++++++|++|+.++++.+++++++ .+++.+.+++||+++++++++|+||+++++++.|+++|++.++
T Consensus 452 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~~f~~~~~~~~~ 520 (610)
T cd01150 452 -----------LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQRFHESVEEIVD 520 (610)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999999999999987 5667889999999999999999999999999999999998889
Q ss_pred ccHHHHHHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccCcccc-CchH
Q 048624 585 PSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR-QSDA 663 (673)
Q Consensus 585 ~~~~~vL~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s~i~~-dg~~ 663 (673)
++++.||++||.||+|+.|++|++||++++++|++|.+.+++.+.+||.+|||||+.|||||+|||++|+||||+ ||++
T Consensus 521 ~~~~~vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~a~~LvDaf~~~d~~l~s~lg~~dg~~ 600 (610)
T cd01150 521 PSVRAVLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPDAVALVDAFDLPDFVLNSPIGRYDGDV 600 (610)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHhCChhhcccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhh
Q 048624 664 YAYYTQIV 671 (673)
Q Consensus 664 Ye~~~~~~ 671 (673)
||+||++.
T Consensus 601 y~~l~~~a 608 (610)
T cd01150 601 YENLFEEA 608 (610)
T ss_pred HHHHHHHH
Confidence 99999986
No 6
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-104 Score=898.45 Aligned_cols=603 Identities=27% Similarity=0.375 Sum_probs=521.1
Q ss_pred cCCCCccCcC-chHhhhhhcCCCH---HHHHHHHHHHhcCCCCCCC---ccCCHHHHHHHHHHHHHHHHHHcCCCCcccc
Q 048624 31 LMAPSAQNYD-LCAVIWLYERKAQ---GDTRESVEYFNSRPDLQTP---VEILKDDHRELCWRQLLGLVREAGIKPFKYV 103 (673)
Q Consensus 31 ~~~~~~~~~~-~~~~m~~~l~~e~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p 103 (673)
++..||+..+ ++++|..+|.+.+ +.++++.+++.++|+|... +.+++++..+...++..+.....+ +
T Consensus 3 ~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~~------~ 76 (646)
T PTZ00460 3 MLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHLN------L 76 (646)
T ss_pred hHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHcC------c
Confidence 3445676665 8899999997643 3344599999999988753 348888888877676655554332 1
Q ss_pred CCCHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEE
Q 048624 104 AEDPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183 (673)
Q Consensus 104 ~~~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~ 183 (673)
+ +...+ .. .-.+++....+++|.++++++|..+||++|+++|||++.+|+++||||+|||+||||+.+++|||+
T Consensus 77 ~-~~~~~---~~--~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt 150 (646)
T PTZ00460 77 A-NPNYY---TP--NLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTAT 150 (646)
T ss_pred h-hhhHH---hh--hhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEE
Confidence 1 11111 11 112444445677888899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCC
Q 048624 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHK 263 (673)
Q Consensus 184 ~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~ 263 (673)
+|+++|+|||||||++|+|+||+|++..||+++|+||+..+++++ |+++|+||+||.++|+++|||+++++++|
T Consensus 151 ~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~------Gi~~FlV~ird~~~~~~~pGV~vg~~~~k 224 (646)
T PTZ00460 151 YDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNK------GVHPFMVRIRDKETHKPLQGVEVGDIGPK 224 (646)
T ss_pred EcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCC------ceEEEEEeccccCCCCCCCCeEEeccccc
Confidence 998899999999999999999998544999999999998766555 99999999999999999999999999999
Q ss_pred ccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048624 264 VGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYS 343 (673)
Q Consensus 264 ~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya 343 (673)
+|+++++++.|.|||||||++||||++++|+++|.|+++. . +...+..|..+|+.+++.++|++++|+++|++|+
T Consensus 225 ~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g---~--~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa 299 (646)
T PTZ00460 225 MGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQG---N--PKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYS 299 (646)
T ss_pred cCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCC---c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997642 1 4567788899999999999999999999999999
Q ss_pred hhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcchhhhHHHHHHhHHHHHHHHH
Q 048624 344 LLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKK---THDEQLVGDVHALSAGLKSYVTSYT 420 (673)
Q Consensus 344 ~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~K~~at~~a 420 (673)
++|+|||+++++|.||++||++|++|+++++.+++++++.+.+.+.+..... ..+....++.+..++++|+++++.+
T Consensus 300 ~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a 379 (646)
T PTZ00460 300 IYRQQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFV 379 (646)
T ss_pred HccccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999988889999999999999999999999988877666655543221 1222223457899999999999999
Q ss_pred HHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHhhhhhhc
Q 048624 421 AKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQG-GPLTVTWNYLRESMNAYLS 499 (673)
Q Consensus 421 ~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 499 (673)
.+++++|+|+|||+||+.++++++++||+++.+|+||+|+++++++|+.+++.+.+..++ .++.++++||.+.. ..
T Consensus 380 ~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~-~~-- 456 (646)
T PTZ00460 380 SNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHIT-EK-- 456 (646)
T ss_pred HHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhh-hh--
Confidence 999999999999999999999999999999999999999999999999999999887665 45677889986531 10
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q 048624 500 QPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRK-HSKTLGSFGAWNR-CLNHLLTLAESHIESVILAKFIE 577 (673)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~-~~~~~~~~~a~n~-~~~~~~~~a~A~~e~~~l~~f~~ 577 (673)
..++.++.++.++|++|+.+++..++.++++ ..++.+.+++||. ++++++++|+||+++++++.|++
T Consensus 457 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~~f~~ 525 (646)
T PTZ00460 457 -----------LADQTTIESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYLCFLD 525 (646)
T ss_pred -----------ccccCChHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224566789999999999999999999987 5667788999999 67899999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccCcc
Q 048624 578 AVQNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPI 657 (673)
Q Consensus 578 ~i~~~~~~~~~~vL~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s~i 657 (673)
+|+.. +++++++|++||.||+|+.|++++|||+++|+||++|++.|++.+.+||.+|||||+.|||||++||++|+|||
T Consensus 526 ~i~~~-~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~av~LvDaf~~~d~~L~S~l 604 (646)
T PTZ00460 526 TINNA-NKSTKEILTQLADLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNALGLVEAFGLSDNSLRSLI 604 (646)
T ss_pred HHhcc-CHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhHHHHhhccCCCHHHhcchh
Confidence 99864 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CchHHHHHHHhh
Q 048624 658 AR-QSDAYAYYTQIV 671 (673)
Q Consensus 658 ~~-dg~~Ye~~~~~~ 671 (673)
|+ |||+||+||++.
T Consensus 605 G~~dg~vY~~l~~~a 619 (646)
T PTZ00460 605 GCHDGDPYENMYNWA 619 (646)
T ss_pred hcccChHHHHHHHHH
Confidence 99 999999999874
No 7
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=3e-104 Score=895.86 Aligned_cols=608 Identities=31% Similarity=0.463 Sum_probs=523.7
Q ss_pred CCCccCcC-chHhhhhhcCCCH---HHHHHHHHHHhcCCCCCC--CccCCHHHHHHHHHHHHHHH---HHHcCCCCcccc
Q 048624 33 APSAQNYD-LCAVIWLYERKAQ---GDTRESVEYFNSRPDLQT--PVEILKDDHRELCWRQLLGL---VREAGIKPFKYV 103 (673)
Q Consensus 33 ~~~~~~~~-~~~~m~~~l~~e~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---l~e~Gl~~~~~p 103 (673)
..+|+..+ ++++|..+|.+.+ +.++++.+++.++|+|.. .+.+++++.++...++..+. +.+.|+..
T Consensus 8 ~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~~~~---- 83 (664)
T PLN02443 8 AGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELRLTE---- 83 (664)
T ss_pred HHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCc----
Confidence 34566555 8889999998644 234448899999999875 23478888887776655443 34555431
Q ss_pred CCCHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEE
Q 048624 104 AEDPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVAT 183 (673)
Q Consensus 104 ~~~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~ 183 (673)
.+. .... . +...+..+.+|+++++++|..+||++|+++|||++.+|+++||||+|||+||||+.+++|||+
T Consensus 84 -~~~---~~~~-~----~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt 154 (664)
T PLN02443 84 -EEA---GKLR-S----FVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTAT 154 (664)
T ss_pred -hhH---HHHH-H----hcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEE
Confidence 111 1111 1 122223456788899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCC
Q 048624 184 FDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHK 263 (673)
Q Consensus 184 ~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~ 263 (673)
+|+++++|||||||++|+||||+|+++.|++++|+||++.+++++ |+++|+||+||.++|+++|||+|+++++|
T Consensus 155 ~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~------Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K 228 (664)
T PLN02443 155 FDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDH------GIHGFIVQLRSLDDHSPLPGVTVGDIGMK 228 (664)
T ss_pred EeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCC------CeEEEEEecCCcCcCCCCCCeEEeccccc
Confidence 999899999999999999999999855899999999998766655 99999999999999999999999999999
Q ss_pred cc---CCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048624 264 VG---LNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAI 340 (673)
Q Consensus 264 ~G---~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~ 340 (673)
+| ++++|||.|.|||||||++||||++++|+++|.|.++.. . ....+..|..+|+.+++.++|++++|+++|+
T Consensus 229 ~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~--~--~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAv 304 (664)
T PLN02443 229 FGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDV--P--RQLVYGTMVYVRQTIVADASTALSRAVCIAT 304 (664)
T ss_pred cCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 677999999999999999999999999999999998631 1 2457889999999999999999999999999
Q ss_pred HHhhhccccCCCCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcchhhhHHHHHHhHHHHH
Q 048624 341 RYSLLRQQFGPPRK-PEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKK---THDEQLVGDVHALSAGLKSYV 416 (673)
Q Consensus 341 ~ya~~R~qfg~~~~-~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~K~~a 416 (673)
+|+.+|+|||.|.+ +|.|+++||++|++|+++++.+++++++...+.+.+....+ .++.....+.|..++++|+++
T Consensus 305 rYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~ 384 (664)
T PLN02443 305 RYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLT 384 (664)
T ss_pred HHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Confidence 99999999998754 69999999999999999999999999888777666654322 233223356888999999999
Q ss_pred HHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhh
Q 048624 417 TSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKEKFQGGPLTVTWNYLRESMNA 496 (673)
Q Consensus 417 t~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
++.+.+++++|+|+|||+||+.+++++++++|+++.+|+||+|+|+++++|+.+++.+.+..++.+..+++.||.+. ..
T Consensus 385 t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~-~~ 463 (664)
T PLN02443 385 TSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRV-QH 463 (664)
T ss_pred HHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhh-hh
Confidence 99999999999999999999999999999999999999999999999999999999998888777777889999753 22
Q ss_pred hhcCCCCCcccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 048624 497 YLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFI 576 (673)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~a~n~~~~~~~~~a~A~~e~~~l~~f~ 576 (673)
.+....+ ..+..++.|+++++++|++|+.+++..+++++++ +.+..++||.|+++++++|+||+++++++.|+
T Consensus 464 ~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~ 536 (664)
T PLN02443 464 LLQCRCG----VQTAEDWLNPSVVLEAFEARAARMAVTCAQNLSK---FENQEAGFQELSADLVEAAVAHCQLIVVSKFI 536 (664)
T ss_pred hhccccc----ccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 1234678999999999999999999999888864 35567999999999999999999999999999
Q ss_pred HHHHcC-CCccHHHHHHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccC
Q 048624 577 EAVQNC-PDPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRA 655 (673)
Q Consensus 577 ~~i~~~-~~~~~~~vL~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s 655 (673)
++|+++ ++++++++|+.||.||+|+.|+++.|||+++||||++|++.+++.+.+||.+|||||+.|||||+|||++|+|
T Consensus 537 ~~~~~~~~~~~~~~~L~~l~~L~~l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~av~LvDaf~~~d~~L~S 616 (664)
T PLN02443 537 EKLQQDIPGKGVKKQLQNLCYIYALYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNAVALVDAFNYTDHYLGS 616 (664)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhHHHHhhccCCCHHHhCc
Confidence 999864 5889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-CchHHHHHHHhh
Q 048624 656 PIAR-QSDAYAYYTQIV 671 (673)
Q Consensus 656 ~i~~-dg~~Ye~~~~~~ 671 (673)
|||+ ||+|||+||++.
T Consensus 617 ~lG~~DG~vYe~l~~~a 633 (664)
T PLN02443 617 VLGRYDGNVYPKLYEEA 633 (664)
T ss_pred hhhccCChHHHHHHHHH
Confidence 9999 999999999974
No 8
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-66 Score=499.78 Aligned_cols=377 Identities=21% Similarity=0.292 Sum_probs=342.8
Q ss_pred hhhcCCCHHHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhc
Q 048624 46 WLYERKAQGDTRESVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGS 119 (673)
Q Consensus 46 ~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~ 119 (673)
.|.|+++|.++++..+.|..+.+.| ...++|+..+++ .++.+...++|+....+|+. +..+.+.+.|+|++
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P--~aae~Dk~ge~P-~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay 101 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIP--NAAEYDKSGEFP-WEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY 101 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhcc--chhhhcccCCCc-HHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence 5899999999999555555554544 456667766655 77778888999999999976 67888999999999
Q ss_pred cchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCC
Q 048624 120 VDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDG 199 (673)
Q Consensus 120 ~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~ 199 (673)
.|.++...+..| +++.++|..+|+++||++||+++.....+++|++|||+.|||+.++.|+|++. ||+||||
T Consensus 102 GCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN----- 173 (408)
T KOG0140|consen 102 GCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN----- 173 (408)
T ss_pred cchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc-----
Confidence 999999988887 48999999999999999999999999999999999999999999999999987 9999999
Q ss_pred ceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecce
Q 048624 200 AIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSV 279 (673)
Q Consensus 200 G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v 279 (673)
|+|.||||++ +|+|++|+||++++.+. +..++++.|+|+ +| +||++.+....+||.|..|+-.|.|+||
T Consensus 174 GsKawItg~G-~anwyfVlaRtd~~pk~---p~~Kaft~fiVe-~d------TpGlt~GkKE~nmGqr~sdTR~itFEDv 242 (408)
T KOG0140|consen 174 GSKAWITGAG-HANWYFVLARTDPDPKT---PAGKAFTAFIVE-GD------TPGLTRGKKEKNMGQRCSDTRGITFEDV 242 (408)
T ss_pred CceeeeecCC-ccceEEEEEecCCCCCC---CCCcceEEEEEe-CC------CCCcCcChhhhcccccCCCCceeeeeec
Confidence 9999999999 99999999999864332 234589999999 45 7999999999999999999999999999
Q ss_pred ecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 048624 280 RIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSI 359 (673)
Q Consensus 280 ~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i 359 (673)
+||.+|+||. ++.||.+.+..++.+|..+|+.++|+++++++.+++|+.+|++||.| |
T Consensus 243 rVP~~Nvlg~----------------~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~------i 300 (408)
T KOG0140|consen 243 RVPKENVLGA----------------PGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTP------I 300 (408)
T ss_pred ccchhccccC----------------CCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcC------h
Confidence 9999999986 68899999999999999999999999999999999999999999999 9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCc
Q 048624 360 LDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAV 439 (673)
Q Consensus 360 ~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 439 (673)
+++|.+|+.||+|..+++. ++.+++.+++..|+++ + ....++++|.++++.|..++..++|++||.||..+
T Consensus 301 A~hQ~vqF~LAdMA~~le~----aRL~~~~aa~evd~~r----~-~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~e 371 (408)
T KOG0140|consen 301 ANHQAVQFMLADMAINLEL----ARLMTRNAAWEVDNGR----R-NSYYASIAKLFATDTANQAATNAVQIFGGNGFNKE 371 (408)
T ss_pred hhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCC----c-chHHHHHHHHHhhhhHHHHHHHHHHhhccCCcccc
Confidence 9999999999999999998 5667788888888873 3 37889999999999999999999999999999999
Q ss_pred cchhccccccccccccCccHHHHHHHHHHHHHHHHH
Q 048624 440 NRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYK 475 (673)
Q Consensus 440 ~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 475 (673)
+|+++++||+++++|+||++++++..|+|.||..+.
T Consensus 372 YpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 372 YPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred ccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999997753
No 9
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-66 Score=499.78 Aligned_cols=380 Identities=22% Similarity=0.291 Sum_probs=341.9
Q ss_pred chHhhhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHH-HHHHHHHHHHHcCCCCccccCC------CHHHHHH
Q 048624 41 LCAVIWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHREL-CWRQLLGLVREAGIKPFKYVAE------DPAQYFA 112 (673)
Q Consensus 41 ~~~~m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~ 112 (673)
++...-+.|++||..+|+ +++||.++ +.| +..++|...++ ..+++|+.+.+.|++|+..|++ ++...+.
T Consensus 33 ~~~d~~~g~~~e~~~~r~sv~kF~qee-laP--~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~i 109 (421)
T KOG0141|consen 33 PVDDSMFGLSDEQDQLRESVRKFFQEE-LAP--HASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCI 109 (421)
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHh-hcc--hhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHH
Confidence 444444558999999999 77777766 333 33344433332 2488999999999999999976 8889999
Q ss_pred HHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEE
Q 048624 113 IAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFI 192 (673)
Q Consensus 113 ~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~v 192 (673)
++||+++...+++..++.|.+++...|.+.|++||+++|||++.+|+.+|++|||||++|||+.++.+.|.++ |+.||
T Consensus 110 vmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yi 187 (421)
T KOG0141|consen 110 VMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYI 187 (421)
T ss_pred HHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEE
Confidence 9999999998999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCce
Q 048624 193 INTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNG 272 (673)
Q Consensus 193 LntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~ 272 (673)
|| |.|+||||++ .||..+|+|.++..+.+. .+|+++|||+.. +||++..+.-+|+||||.+++
T Consensus 188 LN-----GsK~witNG~-~advliVyAkTd~~a~~~----~hGIt~FiVEkg-------m~GFs~~~KLdKlGmrgsdTc 250 (421)
T KOG0141|consen 188 LN-----GSKFWITNGP-DADVLIVYAKTDHSAVPP----SHGITAFIVEKG-------MPGFSTAQKLDKLGMRGSDTC 250 (421)
T ss_pred ec-----CcEEEEecCC-CCcEEEEEEecCCCCCCC----cCceEEEEEcCC-------CcccccchhhHhhcCCCCcch
Confidence 99 9999999999 999999999998764432 469999999964 899999999999999999999
Q ss_pred eEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 048624 273 ALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP 352 (673)
Q Consensus 273 ~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 352 (673)
++.|+|++||++|+||. +++|+.+++..+...|+.+++..+|+++.+++.+..|+++|++||++
T Consensus 251 ELvFed~~vpas~ilg~----------------enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ 314 (421)
T KOG0141|consen 251 ELVFEDCKVPASNILGE----------------ENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKK 314 (421)
T ss_pred heehhhccCcHHHhcCc----------------CCceEEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCc
Confidence 99999999999999986 57788889999999999999999999999999999999999999999
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Q 048624 353 RKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACG 432 (673)
Q Consensus 353 ~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~G 432 (673)
|++||.+|+++|+|++.+.+ ++..++..++..|.+ ......+++++.|+++.+..++-+|+|++|
T Consensus 315 ------ig~fQ~~QgklAdmyT~l~a----~Rsyvy~va~~~d~g-----~~~~kdcag~il~aaE~~tqVald~iQ~~G 379 (421)
T KOG0141|consen 315 ------IGHFQLLQGKLADMYTTLCA----SRSYVYNVARACDAG-----NVDPKDCAGVILYAAEKATQVALDAIQCLG 379 (421)
T ss_pred ------hhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHhhcC-----CCChhhhhhhhhhHhhhhHHHHHHHHhhcc
Confidence 99999999999999999988 456667777888877 445567899999999999999999999999
Q ss_pred ccCccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 433 GHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 433 g~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
|.||.+++|.+|++||++.+.|+.|++++.+..|+|.+.+.
T Consensus 380 GnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 380 GNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred CcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999998754
No 10
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.2e-66 Score=508.79 Aligned_cols=357 Identities=26% Similarity=0.372 Sum_probs=324.0
Q ss_pred hcCCCHHHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 48 YERKAQGDTRESVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 48 ~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
.|++++.++++..+.|+++.+.| ...++|+.... +..+.+.+.++|++++.+|++ ++.....++||+++.|
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~P--lv~~mD~~~~~-~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d 112 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKP--LVREMDRESRY-PASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVD 112 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcch--HHHhhhhhccC-CHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccC
Confidence 36888999999555555554543 33444544443 477889999999999999976 7888999999999999
Q ss_pred hhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCce
Q 048624 122 MSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAI 201 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~ 201 (673)
+++++.+.+|..+..++|..||+++||++|+|. ..|+.+||||++||+.|||+..+.|+|++| ||.|+|| |+
T Consensus 113 ~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN-----Gs 184 (398)
T KOG0139|consen 113 ASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN-----GS 184 (398)
T ss_pred ccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe-----cc
Confidence 999999999999999999999999999977776 567889999999999999999999999999 9999999 99
Q ss_pred eeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceec
Q 048624 202 KWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281 (673)
Q Consensus 202 K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~V 281 (673)
|+||+|++ .|+|++|+|.++...+ ++|+++|+||. | .||++++...+|+|+|+++++.+.|+||||
T Consensus 185 KmWItN~~-~A~~~lVfan~d~~~~------~Kgit~fiV~r-d------~~Gl~~~k~eDKLGmRaSsTcql~fedVrV 250 (398)
T KOG0139|consen 185 KMWITNAG-EADWFLVFANADPSKG------YKGITCFIVPR-D------TPGLSLGKKEDKLGMRASSTCQLHFEDVRV 250 (398)
T ss_pred eeeecCCc-ccceEEEEEecChhhc------cCceeEEEeeC-C------CCCcccCCccccccccccceeeEEeccccc
Confidence 99999999 9999999999854332 46999999995 5 799999999999999999999999999999
Q ss_pred CcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 048624 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILD 361 (673)
Q Consensus 282 P~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~ 361 (673)
|.+++||. +|.||++.+..++.+|+.+++.++|.++.|++.++.|+++|.|||++ |++
T Consensus 251 pks~IlGe----------------~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~------l~d 308 (398)
T KOG0139|consen 251 PKSSILGE----------------YGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKR------LLD 308 (398)
T ss_pred cchhhccc----------------CCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcch------hhh
Confidence 99999997 57899999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccc
Q 048624 362 YQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNR 441 (673)
Q Consensus 362 ~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 441 (673)
+|.+||+||++.+++++ +|.++|+++++.+.| .+...+++++|+++++.+..++..|+|..||.||++++|
T Consensus 309 ~Q~iQhqiA~~~teiEa----aRlL~ynaAr~k~~G-----~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~p 379 (398)
T KOG0139|consen 309 FQGLQHQIADMATEIEA----ARLLVYNAARMKDQG-----LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFP 379 (398)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC-----CchHHHHHHHHHhhhhhhhHHHHHHHHHHhccccccccc
Confidence 99999999999999999 577889999999988 677889999999999999999999999999999999999
Q ss_pred hhccccccccccccCccHH
Q 048624 442 FGSLRNDHDIFQTFEGDNT 460 (673)
Q Consensus 442 l~r~~rd~~~~~~~eG~~~ 460 (673)
++++|||+++..||||+++
T Consensus 380 aek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 380 AEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHHhhhceeeeeecCCCC
Confidence 9999999999999999863
No 11
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.4e-54 Score=471.58 Aligned_cols=367 Identities=22% Similarity=0.281 Sum_probs=320.7
Q ss_pred hhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHH
Q 048624 45 IWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAV 117 (673)
Q Consensus 45 m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~l 117 (673)
|+|.++++|+++++ +++++.+. + .+ ...+.+.... +++++|+.+.+.||+++ +|++ ++.++..++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~d~~~~-~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l 83 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEE-L-AP-RVLEAYREEK-FDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREV 83 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHh-c-Cc-cHHHHHHhCC-CCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHH
Confidence 88889999999988 66666654 2 21 2222333333 45899999999999999 9965 788999999999
Q ss_pred hccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCC
Q 048624 118 GSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPN 197 (673)
Q Consensus 118 a~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~ 197 (673)
++.|+++++.+.+|..++..+|..+|+++|+++|++++.+|++++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 158 (386)
T cd01151 84 ERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN--- 158 (386)
T ss_pred HhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE---
Confidence 99999988887777666667888999999999999999999999999999999999999999999998 8999999
Q ss_pred CCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEec
Q 048624 198 DGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFC 277 (673)
Q Consensus 198 ~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd 277 (673)
|+|+|||++. .|||++|+||+..+ . ++++|+||.+ .|||++.+.|+++|+++++++.+.|+
T Consensus 159 --G~K~~is~~~-~Ad~~lv~ar~~~~---~------~~~~flVp~~-------~~gv~i~~~~~~~G~~g~~s~~v~f~ 219 (386)
T cd01151 159 --GSKTWITNSP-IADVFVVWARNDET---G------KIRGFILERG-------MKGLSAPKIQGKFSLRASITGEIVMD 219 (386)
T ss_pred --EEEEeecCCC-cCCEEEEEEEECCC---C------cEEEEEEcCC-------CCCeecCCCCCCcCCCCCceeEEEEc
Confidence 9999999999 99999999998531 2 7889999964 59999999999999999999999999
Q ss_pred ceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 048624 278 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEV 357 (673)
Q Consensus 278 ~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~ 357 (673)
||+||++++|+. +.|+......+...|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 220 ~v~Vp~~~~l~~-----------------~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~----- 277 (386)
T cd01151 220 NVFVPEENLLPG-----------------AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRP----- 277 (386)
T ss_pred cEEeCHHHcCCc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCc-----
Confidence 999999999974 2355666778889999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCcc
Q 048624 358 SILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYA 437 (673)
Q Consensus 358 ~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 437 (673)
|+++|.+|++|++|.+.+++++.+. +.+++..+.+ ......++++|.++++.+.++++.++|+|||+||+
T Consensus 278 -i~~~q~vq~~la~~~~~~eaar~l~----~~a~~~~d~~-----~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~ 347 (386)
T cd01151 278 -LAAFQLVQKKLADMLTEIALGLLAC----LRVGRLKDQG-----KATPEQISLLKRNNCGKALEIARTAREMLGGNGIS 347 (386)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999965544 4445555544 22344678999999999999999999999999999
Q ss_pred CccchhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 438 AVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 438 ~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
.+++++|+|||++...+++|++++++..+++.+++
T Consensus 348 ~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 348 DEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred CCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999875
No 12
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-54 Score=486.96 Aligned_cols=371 Identities=20% Similarity=0.216 Sum_probs=306.0
Q ss_pred cCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 49 ERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 49 l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
|++|++.+.+ ..+.+.... . .++.. ++... .++++|+.+++.||+++.+|++ +..++..++|++++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~~--~-~~~~~-~~~~~-~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~ 153 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRMV--N-DWQIT-HELAD-LPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRS 153 (777)
T ss_pred CCHHHHHHHHHHHHHHHHHH--H-HHHHh-ccccC-CCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 5777777776 344443321 0 11111 11123 4588999999999999999975 7888999999999999
Q ss_pred hhhHHHHHHhHhhHH-HHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEE---cCCCC---EEEEe
Q 048624 122 MSLGIKMGVQYSLWG-GSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATF---DPIKD---EFIIN 194 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~-~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~---d~~~~---~~vLn 194 (673)
++++..+.+|.+++. ..|..+||++||++|||++++|+.++||++|||++|||+.++.|+++. +.+|+ +|+||
T Consensus 154 ~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN 233 (777)
T PRK09463 154 GTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT 233 (777)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE
Confidence 888777777766653 478899999999999999999999999999999999999999876542 11255 69999
Q ss_pred cCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeE
Q 048624 195 TPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGAL 274 (673)
Q Consensus 195 tP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l 274 (673)
|+|.|||+++ .||+++|++++..++......++.|+++|+||.+ .|||++++.+.++|++ ..++.+
T Consensus 234 -----G~K~~IT~a~-~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d-------~pGV~ig~~~~~lG~r-~~~g~v 299 (777)
T PRK09463 234 -----WNKRYITLAP-IATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD-------TPGVEIGRRHFPLNVP-FQNGPT 299 (777)
T ss_pred -----EEEEeeCCCC-ccCEEEEEEEecCcccccCCCCCCceEEEEEECC-------CCCeEecccccccCcc-cccceE
Confidence 9999999999 9999999999743221000011348999999964 6999999999999998 579999
Q ss_pred EecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 048624 275 RFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGR-VGLAYSSVGVLKIAATIAIRYSLLRQQFGPPR 353 (673)
Q Consensus 275 ~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~r-l~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 353 (673)
.||||+||.+++||... ..+.||..++..+..+| +.+++.++|++++|++.+++|+++|+|||+|
T Consensus 300 ~fddV~VP~d~lLG~~~-------------~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~p- 365 (777)
T PRK09463 300 RGKDVFIPLDYIIGGPK-------------MAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLP- 365 (777)
T ss_pred EeeeeecCHHHhccccc-------------ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999999999998411 13789999999999999 8999999999999999999999999999999
Q ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCc
Q 048624 354 KPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGG 433 (673)
Q Consensus 354 ~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg 433 (673)
|++||.+|++|++|.+.+++++++...+ ++..|.+ ......++++|+++++.+.+++++|+|+|||
T Consensus 366 -----Ig~fQaVQ~~LAdma~~~~a~eaar~~~----a~~~D~G-----~~~~~~aA~AK~~atE~a~~va~~AmQIhGG 431 (777)
T PRK09463 366 -----IGKFEGIEEPLARIAGNAYLMDAARTLT----TAAVDLG-----EKPSVLSAIAKYHLTERGRQVINDAMDIHGG 431 (777)
T ss_pred -----hhhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999977765433 3344554 2235678999999999999999999999999
Q ss_pred cCccCc--cchhccccccccccccCccHHHHHHHH
Q 048624 434 HGYAAV--NRFGSLRNDHDIFQTFEGDNTVLLQQV 466 (673)
Q Consensus 434 ~Gy~~~--~~l~r~~rd~~~~~~~eG~~~vl~~~i 466 (673)
.||+.+ ++++|+|||+++..|+||+|++++..+
T Consensus 432 ~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 432 KGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred hheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999997 899999999999999999999999876
No 13
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.4e-54 Score=465.75 Aligned_cols=372 Identities=19% Similarity=0.150 Sum_probs=320.0
Q ss_pred hhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHH
Q 048624 45 IWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAV 117 (673)
Q Consensus 45 m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~l 117 (673)
|+|.|+++|+++++ +++|++++. +++ ...+.++... ++.++|+.+++.||+++.+|++ ++.++..+++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~-~~~-~~~~~d~~~~-~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 77 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASEN-WEA-YFAECDRDSV-YPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMEL 77 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcc-CCh-hHHHHHhhCC-CCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHH
Confidence 67889999999998 788877663 221 2223344334 4488999999999999999975 899999999999
Q ss_pred hccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCC
Q 048624 118 GSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPN 197 (673)
Q Consensus 118 a~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~ 197 (673)
++.|+++++.+.++. ....|..+|+++|+++||+++.+|+.++|+++|||++|||+..+.|+|+++ +|+|+||
T Consensus 78 a~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln--- 150 (380)
T PRK03354 78 GRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN--- 150 (380)
T ss_pred HhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe---
Confidence 999998876655542 345788899999999999999999999999999999999999999999988 8999999
Q ss_pred CCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEec
Q 048624 198 DGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFC 277 (673)
Q Consensus 198 ~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd 277 (673)
|+|+|++++. +|||++|+|++..+.+. .++.+|+||.+ .|||++. .|+++|+++++++.+.||
T Consensus 151 --G~K~fis~~~-~ad~~~v~a~~~~~~~~------~~~~~~lv~~~-------~~gv~~~-~~~~~G~r~~~~~~v~f~ 213 (380)
T PRK03354 151 --GSKCFITSSA-YTPYIVVMARDGASPDK------PVYTEWFVDMS-------KPGIKVT-KLEKLGLRMDSCCEITFD 213 (380)
T ss_pred --eEEEEEcCCC-cCCEEEEEEEcCCCCCC------CceeEEEEECC-------CCceEec-cccccCCCCCCeEEEEEc
Confidence 9999999999 99999999997432222 26788999975 5999996 589999999999999999
Q ss_pred ceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 048624 278 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEV 357 (673)
Q Consensus 278 ~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~ 357 (673)
||+||.++++|. +++|+......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 214 ~v~Vp~~~~lg~----------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~----- 272 (380)
T PRK03354 214 DVELDEKDMFGR----------------EGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEA----- 272 (380)
T ss_pred cEEecHHHcCCC----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-----
Confidence 999999999975 45677766677888999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCcc
Q 048624 358 SILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYA 437 (673)
Q Consensus 358 ~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 437 (673)
|+++|.+|++|++|.+.+++++.+ ++.+++..+.+ ......++++|+++++.+.++++.|+++|||+||+
T Consensus 273 -i~~~q~vq~~la~~~~~~~aar~l----~~~aa~~~~~~-----~~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~ 342 (380)
T PRK03354 273 -IGRFQLIQEKFAHMAIKLNSMKNM----LYEAAWKADNG-----TITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIA 342 (380)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCceec
Confidence 999999999999999999996544 44444544543 12235678899999999999999999999999999
Q ss_pred CccchhccccccccccccCccHHHHHHHHHHHHHHHH
Q 048624 438 AVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQY 474 (673)
Q Consensus 438 ~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 474 (673)
++++++++|||++...+++|++++++..+++.+++.|
T Consensus 343 ~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 343 GNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred CCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998765
No 14
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=8.7e-54 Score=468.42 Aligned_cols=381 Identities=24% Similarity=0.340 Sum_probs=328.0
Q ss_pred hHhhhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHH
Q 048624 42 CAVIWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIA 114 (673)
Q Consensus 42 ~~~m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~ 114 (673)
|+-|++.++++++++++ +++++.++.. + .. .+.... .+.++|+.+.+.||+++.+|++ ++.++..++
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~--~d~~~~-~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~ 93 (409)
T cd01161 20 PSVLTEEQTEELNMLVGPVEKFFEEVND-P--AK--NDQLEK-IPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLA 93 (409)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHHhCC-c--hh--hccccC-CCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHH
Confidence 45699999999999988 7777776522 1 11 222233 3488999999999999999975 789999999
Q ss_pred HHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEe
Q 048624 115 EAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIIN 194 (673)
Q Consensus 115 e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLn 194 (673)
|++++ |+++++.+.+|..++...+..+|+++|+++|++++.+|+.++|+++|||++|||+..++|+|++++++++|+||
T Consensus 94 e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~ 172 (409)
T cd01161 94 EIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLN 172 (409)
T ss_pred HHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEE
Confidence 99999 99998888888766556678899999999999999999999999999999999999999999997667899999
Q ss_pred cCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeE
Q 048624 195 TPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGAL 274 (673)
Q Consensus 195 tP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l 274 (673)
|+|+|++|+. .|||++|.|++..++.+. ..+.++.+|+||.+ .|||++.+.|+++|+++++++.|
T Consensus 173 -----G~K~~vs~~~-~Ad~~lv~ar~~~~~~~g--~~~~~~~~flvp~~-------~~gv~~~~~~~~~G~~g~~s~~v 237 (409)
T cd01161 173 -----GSKIWITNGG-IADIFTVFAKTEVKDATG--SVKDKITAFIVERS-------FGGVTNGPPEKKMGIKGSNTAEV 237 (409)
T ss_pred -----eEEEeecCCC-cCCEEEEEEEcCCCCCCC--CCCCceEEEEEeCC-------CCCcccCCcccccCCCCCCceEE
Confidence 9999999999 999999999986321110 01237899999964 69999999999999999999999
Q ss_pred EecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 048624 275 RFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRK 354 (673)
Q Consensus 275 ~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 354 (673)
.|+||+||++++||. +++|+..+...+..+|+.+++.++|+++++++.+++|++.|+|||+|
T Consensus 238 ~~~~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~-- 299 (409)
T cd01161 238 YFEDVKIPVENVLGE----------------VGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKK-- 299 (409)
T ss_pred EeccEEECHHHcCCC----------------CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCcc--
Confidence 999999999999976 45677788889999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCcc
Q 048624 355 PEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGH 434 (673)
Q Consensus 355 ~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~ 434 (673)
|.++|.+|++|+++.+.+++++.+ ++.+++..+.+.. .+....++++|+++++.+.++++.|+|+|||.
T Consensus 300 ----l~~~q~vq~~la~~~~~~~aar~l----~~~a~~~~d~~~~---~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~ 368 (409)
T cd01161 300 ----IHEFGLIQEKLANMAILQYATESM----AYMTSGNMDRGLK---AEYQIEAAISKVFASEAAWLVVDEAIQIHGGM 368 (409)
T ss_pred ----HHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999996554 4444455554410 23456789999999999999999999999999
Q ss_pred CccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 435 GYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 435 Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
||+.+++++|+|||+++..+++|++++++.++++.+|+.
T Consensus 369 G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 369 GFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred cccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998753
No 15
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-53 Score=463.12 Aligned_cols=371 Identities=19% Similarity=0.170 Sum_probs=317.9
Q ss_pred hhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHH
Q 048624 45 IWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAV 117 (673)
Q Consensus 45 m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~l 117 (673)
|+|.+++|+..+++ ++.++.+. +.+ +...+.++.+. ++.++|+.+++.||+++.+|++ ++.+++.++|++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~d~~~~-~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l 77 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRN-FPE-EYFRTCDENGT-YPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEV 77 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-cCc-hhHHHHHHhCC-CCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHH
Confidence 78899999999988 66666554 221 12233344444 4589999999999999999965 889999999999
Q ss_pred hccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhh-hcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecC
Q 048624 118 GSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGI-DNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTP 196 (673)
Q Consensus 118 a~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i-~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP 196 (673)
++.|.+. +.+ +..++...|..+|+++|+++|++++ .+|+.++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 78 a~~~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln-- 150 (381)
T PRK12341 78 SKCGAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN-- 150 (381)
T ss_pred hhcChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE--
Confidence 9999873 333 3334566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEe
Q 048624 197 NDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRF 276 (673)
Q Consensus 197 ~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~f 276 (673)
|+|+||||++ .||+++|+|++..++.+. .++.+|+||.+ .|||++. .|+++|+++++++.|.|
T Consensus 151 ---G~K~~is~~~-~Ad~~~v~a~~~~~~~~~-----~~~~~~lV~~~-------~~gv~~~-~~~~~G~~~~~~~~v~~ 213 (381)
T PRK12341 151 ---GQKTFITGAK-EYPYMLVLARDPQPKDPK-----KAFTLWWVDSS-------KPGIKIN-PLHKIGWHMLSTCEVYL 213 (381)
T ss_pred ---eEEEEEcCCc-cCCEEEEEEEcCCCCCCC-----CceEEEEEeCC-------CCceeec-ccccccCCCCCceEEEE
Confidence 9999999999 999999999986433221 27899999965 5999995 58999999999999999
Q ss_pred cceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 048624 277 CSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPE 356 (673)
Q Consensus 277 d~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e 356 (673)
+||+||.+++||. +++|+......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 214 ~~v~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~---- 273 (381)
T PRK12341 214 DNVEVEESDLVGE----------------EGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKP---- 273 (381)
T ss_pred CcEEecHHHcCCC----------------CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc----
Confidence 9999999999985 45677777778889999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCc
Q 048624 357 VSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGY 436 (673)
Q Consensus 357 ~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy 436 (673)
|.++|.+|++|+++.+.+++++.+ ++.+++..+++ ......++++|.++++.+.++++.+++++||+||
T Consensus 274 --i~~~~~v~~~la~~~~~~~aar~~----~~~a~~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~ 342 (381)
T PRK12341 274 --IGHNQLIQEKLTLMAIKIENMRNM----VYKVAWQADNG-----QSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGY 342 (381)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999996544 44445555554 2234568999999999999999999999999999
Q ss_pred cCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 437 AAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 437 ~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
.++++++|+|||++...+++|++++++..+++.+++.
T Consensus 343 ~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 343 TDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998864
No 16
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.8e-53 Score=459.58 Aligned_cols=367 Identities=22% Similarity=0.293 Sum_probs=320.0
Q ss_pred cCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 49 ERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 49 l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
++++|+++++ +++++.++ +.+ .....+.... +++++|+.+.+.||+++.+|++ ++.+...+++++++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~-~~~--~a~~~d~~~~-~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~ 76 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKE-MAP--HAADWDQKKH-FPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGC 76 (375)
T ss_pred CCHHHHHHHHHHHHHHHHh-CCc--chhhHHhhCC-CCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 4678888888 77777665 222 2223444444 4588999999999999999965 7899999999999999
Q ss_pred hhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCce
Q 048624 122 MSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAI 201 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~ 201 (673)
+++++.+.+|. ++...+..+|+++|+++|++++.+|+.++++++|||++|||...++|+|+++ +++|+|| |+
T Consensus 77 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~-----G~ 148 (375)
T cd01162 77 VSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN-----GS 148 (375)
T ss_pred hhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE-----EE
Confidence 99887777775 5677888899999999999999999999999999999999999999999998 8899999 99
Q ss_pred eeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceec
Q 048624 202 KWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281 (673)
Q Consensus 202 K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~V 281 (673)
|+|+++++ .||+++|+|++..++. . ++++|+||.+ .|||++.+.|+++|+++++++.|.||||+|
T Consensus 149 k~~vs~~~-~ad~~~v~a~~~~~~~-~------~~~~~lv~~~-------~~gv~v~~~~~~~g~~~~~~~~l~f~~v~V 213 (375)
T cd01162 149 KAFISGAG-DSDVYVVMARTGGEGP-K------GISCFVVEKG-------TPGLSFGANEKKMGWNAQPTRAVIFEDCRV 213 (375)
T ss_pred EEEecCCC-CCCEEEEEEEecCCCC-C------ceEEEEEeCC-------CCCeecCCcccccCCCCCCeeEEEECceEe
Confidence 99999999 9999999999764322 2 7899999964 599999999999999999999999999999
Q ss_pred CcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 048624 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILD 361 (673)
Q Consensus 282 P~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~ 361 (673)
|.+++||. +++|+......+..+|+.+++.++|+++++++.+++|+++|+|||+| |++
T Consensus 214 p~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~------l~~ 271 (375)
T cd01162 214 PVENRLGG----------------EGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKP------LAD 271 (375)
T ss_pred cHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc------HHh
Confidence 99999986 45678777788899999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccc
Q 048624 362 YQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNR 441 (673)
Q Consensus 362 ~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 441 (673)
+|.+|++|++|.+.+++++.+. +.+++..+.+. .+....++++|+++++.+.+++++++|+|||+||+.+++
T Consensus 272 ~~~vq~~la~~~~~l~~a~~~~----~~a~~~~~~~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 343 (375)
T cd01162 272 FQALQFKLADMATELVASRLMV----RRAASALDRGD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYP 343 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 9999999999999999965554 44445555442 223456788999999999999999999999999999999
Q ss_pred hhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 442 FGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 442 l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
++|+|||++...+++|++++++.++++.+++
T Consensus 344 l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 344 VEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998875
No 17
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1e-53 Score=462.06 Aligned_cols=366 Identities=17% Similarity=0.202 Sum_probs=307.7
Q ss_pred hhhcCCCHHHHHH-HHHHHhcCCCCCCCccCC-HHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHH
Q 048624 46 WLYERKAQGDTRE-SVEYFNSRPDLQTPVEIL-KDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAV 117 (673)
Q Consensus 46 ~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~l 117 (673)
+|.+++||+++++ +++|+.++.. +..... .++... +++++|+.+.+.||+++.+|++ ++.+.+.+.|++
T Consensus 1 ~~~~~~eq~~l~~~~~~~~~~~~~--~~~~~~~~d~~~~-~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel 77 (378)
T TIGR03203 1 DFDLSEEQRLLKESVEGLLKTSYD--FDSRKKYQKEKGG-WSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEAL 77 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCC--HHHHHHHHhccCC-CCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHH
Confidence 3668899999999 7777766522 111111 122222 4588999999999999999975 789999999999
Q ss_pred hccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCC
Q 048624 118 GSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPN 197 (673)
Q Consensus 118 a~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~ 197 (673)
++.+.+.+. + .+..++...|..+|+++||++|||++.+|+.++++++|||++|||+.+++|+|+++ +|+|+||
T Consensus 78 ~~~~~~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~--- 150 (378)
T TIGR03203 78 GKALVLEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID--- 150 (378)
T ss_pred hCcccchHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE---
Confidence 997654332 1 22224556788899999999999999999999999999999999999999999998 8899999
Q ss_pred CCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEec
Q 048624 198 DGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFC 277 (673)
Q Consensus 198 ~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd 277 (673)
|+|+||+++. .||+++|+|++..+.+. ++|+++|+||.+ .|||++.+.+.++|+ ..+.|.||
T Consensus 151 --G~K~~vt~a~-~Ad~~lv~ar~~~~~~~-----~~g~~~flV~~~-------~~Gv~~~~~~~~~g~---~~~~l~fd 212 (378)
T TIGR03203 151 --GEKFVVLNGE-TADTLIVTARTKGARRD-----RTGIGVFLVPAG-------AKGVTIKGYPTQDGL---HAADITFT 212 (378)
T ss_pred --eEEEEecCCc-cCCEEEEEEecCCCCCC-----CCceEEEEEECC-------CCCceeccccccCCC---ceeeEEEC
Confidence 9999999999 99999999998543211 238999999964 699999877666665 46899999
Q ss_pred ceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 048624 278 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEV 357 (673)
Q Consensus 278 ~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~ 357 (673)
||+||.+++||. ++.|+..+...+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 213 ~v~vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~p----- 271 (378)
T TIGR03203 213 GVVVGADAAIGD----------------PENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVP----- 271 (378)
T ss_pred CCcccHHhhcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCcc-----
Confidence 999999999986 56788889999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCcc
Q 048624 358 SILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYA 437 (673)
Q Consensus 358 ~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 437 (673)
|++||.+||+|++|.+.++++++ +++.+++..+.+.. .+....++++|+++++.+.++++.|+|+|||+||+
T Consensus 272 -i~~~Q~vq~~lAdm~~~~e~ar~----l~~~aa~~~~~~~~---~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t 343 (378)
T TIGR03203 272 -IGSFQVLQHRAADMFVAVEQARS----MAMFATMASDFDDA---KERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMT 343 (378)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhccceeec
Confidence 99999999999999999999554 44555555443210 23346789999999999999999999999999999
Q ss_pred CccchhccccccccccccCccHHHHHHHHHH
Q 048624 438 AVNRFGSLRNDHDIFQTFEGDNTVLLQQVAG 468 (673)
Q Consensus 438 ~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~ 468 (673)
++++++++|||++...+++|++++++..++.
T Consensus 344 ~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 344 MEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred ccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999998886
No 18
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=3.8e-53 Score=462.45 Aligned_cols=375 Identities=21% Similarity=0.263 Sum_probs=323.0
Q ss_pred hhhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHH-HHHHHHHHcCCCCccccCC------CHHHHHHHHH
Q 048624 44 VIWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWR-QLLGLVREAGIKPFKYVAE------DPAQYFAIAE 115 (673)
Q Consensus 44 ~m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e 115 (673)
.-+|.+++++.++++ +++++.+. +.+ ...+.++....+.. ++|+.|.+.||+++.+|++ ++.++..++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e 97 (404)
T PLN02519 21 SSSLLFDDTQLQFKESVQQFAQEN-IAP--HAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAME 97 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-CCc--chHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 457888999988888 66666664 222 22223333333322 3799999999999999975 7889999999
Q ss_pred HHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEec
Q 048624 116 AVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINT 195 (673)
Q Consensus 116 ~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 195 (673)
++++.|+++++.+.+|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|+++ +|||+||
T Consensus 98 ~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln- 174 (404)
T PLN02519 98 EISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN- 174 (404)
T ss_pred HHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE-
Confidence 9999999999888888766677889999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEE
Q 048624 196 PNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALR 275 (673)
Q Consensus 196 P~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~ 275 (673)
|+|+|++++. .||+++|+|+++.++++. |+.+|+||.. .|||++.+.|+++|+++++++.+.
T Consensus 175 ----G~K~~vs~a~-~ad~~~v~a~~~~~~~~~------~~~~~lVp~~-------~~Gv~~~~~~~~~G~rgt~s~~v~ 236 (404)
T PLN02519 175 ----GNKMWCTNGP-VAQTLVVYAKTDVAAGSK------GITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELV 236 (404)
T ss_pred ----eEEEeecCCC-cCCEEEEEEEeCCCCCCC------eeEEEEEeCC-------CCCeeccCcccccCCCCCCeeEEE
Confidence 9999999999 999999999986433333 7999999964 599999999999999999999999
Q ss_pred ecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 048624 276 FCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKP 355 (673)
Q Consensus 276 fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 355 (673)
|+||+||++++||. ++.|+......+...|+.+++.++|+++++++.+++|+++|.|||+|
T Consensus 237 f~~v~Vp~~~~lg~----------------~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~p--- 297 (404)
T PLN02519 237 FENCFVPEENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRP--- 297 (404)
T ss_pred eCeEEecHHHcCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCcc---
Confidence 99999999999985 34566667778889999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccC
Q 048624 356 EVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHG 435 (673)
Q Consensus 356 e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~G 435 (673)
|.++|.+|++|++|.+.+++++++. +.+++..+.+ .......+.+|.++++.+.++++.++|+|||+|
T Consensus 298 ---l~~~~~v~~~la~~~~~l~aar~~~----~~aa~~~~~~-----~~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g 365 (404)
T PLN02519 298 ---IGEFQFIQGKLADMYTSLQSSRSYV----YSVARDCDNG-----KVDRKDCAGVILCAAERATQVALQAIQCLGGNG 365 (404)
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 9999999999999999999966554 4444444444 222345677899999999999999999999999
Q ss_pred ccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 436 YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 436 y~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
|+++++++|+|||++...+++|++++++..+++.+|+.
T Consensus 366 ~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 366 YINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred ecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998863
No 19
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-53 Score=461.65 Aligned_cols=370 Identities=20% Similarity=0.240 Sum_probs=318.9
Q ss_pred hhh-hhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHH
Q 048624 44 VIW-LYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAE 115 (673)
Q Consensus 44 ~m~-~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e 115 (673)
.|+ |.++++++++++ +.+++.+. +-+ ...+.+.... +++++|+.+++.||+++.+|++ ++.+...+.|
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~--~a~~~d~~~~-~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e 106 (410)
T PTZ00461 31 FMDLYNPTPEHAALRETVAKFSREV-VDK--HAREDDINMH-FNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHH 106 (410)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHh-CCc--cHHHHhhhCC-CCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 365 567888888888 66666554 222 2223333333 4589999999999999999965 7899999999
Q ss_pred HHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEec
Q 048624 116 AVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINT 195 (673)
Q Consensus 116 ~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 195 (673)
++++.|+++++.+.+|..++...+..+|+++|+++|+|++.+|++++|+++|||++|||+.++.|+|+++. +|+|+||
T Consensus 107 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~- 184 (410)
T PTZ00461 107 ELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN- 184 (410)
T ss_pred HHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE-
Confidence 99999988877777776566777888999999999999999999999999999999999999999999873 3579999
Q ss_pred CCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEE
Q 048624 196 PNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALR 275 (673)
Q Consensus 196 P~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~ 275 (673)
|+|+||+|+. .|||++|+|++. . ++.+|+||.+ .|||++.+.|+++|+++++++.+.
T Consensus 185 ----G~K~~vs~a~-~Ad~~lv~a~~~-----~------~~~~flVp~~-------~~Gv~v~~~~~~~G~r~~~~~~l~ 241 (410)
T PTZ00461 185 ----GSKIWITNGT-VADVFLIYAKVD-----G------KITAFVVERG-------TKGFTQGPKIDKCGMRASHMCQLF 241 (410)
T ss_pred ----eEEEeECCCc-cCCEEEEEEEeC-----C------ceEEEEEeCC-------CCCeecCCCCcccCCCCCceEEEE
Confidence 9999999999 999999999963 1 6789999965 599999999999999999999999
Q ss_pred ecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 048624 276 FCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKP 355 (673)
Q Consensus 276 fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 355 (673)
|+||+||++++|+. +++|+......+...|+.+++.++|+++++++++++|+++|+|||+|
T Consensus 242 f~~v~Vp~~~~lg~----------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~--- 302 (410)
T PTZ00461 242 FEDVVVPAENLLGE----------------EGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKP--- 302 (410)
T ss_pred EcceecCHHHhCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcC---
Confidence 99999999999986 34566677788899999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccC
Q 048624 356 EVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHG 435 (673)
Q Consensus 356 e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~G 435 (673)
|+++|.+|++|+++.+.+++++.. ++.+++..+.+ ......++++|.++++.+.++++.++|+|||+|
T Consensus 303 ---i~~~q~vq~~la~~~~~l~aar~l----~~~aa~~~~~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G 370 (410)
T PTZ00461 303 ---ISNFGQIQRYIAEGYADTEAAKAL----VYSVSHNVHPG-----NKNRLGSDAAKLFATPIAKKVADSAIQVMGGMG 370 (410)
T ss_pred ---HHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999996544 44444444443 222356788999999999999999999999999
Q ss_pred ccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 436 YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 436 y~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
|+.+++++|+|||++...+++|++++++..+++.+++.
T Consensus 371 ~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 371 YSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred cCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988763
No 20
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1e-52 Score=456.03 Aligned_cols=370 Identities=21% Similarity=0.261 Sum_probs=316.1
Q ss_pred cCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 49 ERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 49 l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
++++|+++++ +++++.+... + ...+.++... ++.++|+.+.+.||+++.+|++ ++.+...++|++++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~-~--~~~~~d~~~~-~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~ 76 (378)
T cd01157 1 LTEQQKEFQETARKFAREEII-P--VAAEYDKSGE-YPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGC 76 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcc-c--chHHHHhhCC-CCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhh
Confidence 4678888888 7777766522 2 2233343333 4588999999999999999965 7899999999999999
Q ss_pred hhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCce
Q 048624 122 MSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAI 201 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~ 201 (673)
+++++.+..+ .++...+..+|+++|+++||+++.+|++++++++|||++|||+.++.|+|+++ +|+|+|| |+
T Consensus 77 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~-----G~ 148 (378)
T cd01157 77 TGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN-----GQ 148 (378)
T ss_pred hHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe-----eE
Confidence 9877666544 34455667789999999999999999999999999999999999999999988 8899999 99
Q ss_pred eeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceec
Q 048624 202 KWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281 (673)
Q Consensus 202 K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~V 281 (673)
|+|++++. .|||++|+|++..++.. +++.++.+|+||.+ .|||++.+.|.++|+++++++.+.||||+|
T Consensus 149 k~~vs~~~-~ad~~lv~a~~~~~~~~---~~~~~~~~~lv~~~-------~~gv~~~~~~~~~G~~~~~s~~~~~~~v~V 217 (378)
T cd01157 149 KMWITNGG-KANWYFLLARSDPDPKC---PASKAFTGFIVEAD-------TPGIQPGRKELNMGQRCSDTRGITFEDVRV 217 (378)
T ss_pred EEeecCCc-cCCEEEEEEEeCCcccC---CCCCceEEEEEcCC-------CCCeeccCcccccCCCCCCceEEEeccEEE
Confidence 99999999 99999999998543211 11237899999965 599999999999999999999999999999
Q ss_pred CcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 048624 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILD 361 (673)
Q Consensus 282 P~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~ 361 (673)
|.+++|+. ++.|+..+...+...|+.+++.++|+++++++.+++|+++|+|||+| |++
T Consensus 218 p~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~------i~~ 275 (378)
T cd01157 218 PKENVLIG----------------EGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKL------IAE 275 (378)
T ss_pred CHHHcCCC----------------CCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc------HHH
Confidence 99999975 45678778888889999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccc
Q 048624 362 YQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNR 441 (673)
Q Consensus 362 ~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 441 (673)
+|.+|++|++|.+.+++++++ ++.+++..+.+ ......++++|+++++.+.++++.|+|+|||.||+.+++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~----~~~aa~~~d~~-----~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 346 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLA----YQRAAWEVDSG-----RRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYP 346 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCH
Confidence 999999999999999996544 44444555543 222346788999999999999999999999999999999
Q ss_pred hhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 442 FGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 442 l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
++|+|||++...+++|++++++..+++.+++
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 347 VEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred HHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998874
No 21
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.2e-52 Score=459.06 Aligned_cols=369 Identities=22% Similarity=0.279 Sum_probs=317.4
Q ss_pred hhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccC-----CCHHHHHHHHHHHh
Q 048624 45 IWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVA-----EDPAQYFAIAEAVG 118 (673)
Q Consensus 45 m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~-----~~~~~~~~~~e~la 118 (673)
|+..++++|+++++ +++|+.++ +.+ .....++... +++++|+.+.+.||+++.+++ .++.+++.++|+++
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~-~~~--~~~~~~~~~~-~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la 100 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKE-VAP--IMTEYWEKAE-FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVA 100 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHh-ccc--chHHHHHhCC-CCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHH
Confidence 77778999999998 77777665 212 1222222233 458899999999999988832 27899999999999
Q ss_pred ccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCC
Q 048624 119 SVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPND 198 (673)
Q Consensus 119 ~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~ 198 (673)
+.|++++..+.+|..++...|..+|+++|+++|++++.+|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~gg~~ln---- 174 (412)
T PLN02526 101 RVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKV--EGGWILN---- 174 (412)
T ss_pred hhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE----
Confidence 9999887767777766677899999999999999999999999999999999999999999999998 7899999
Q ss_pred CceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecc
Q 048624 199 GAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCS 278 (673)
Q Consensus 199 ~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~ 278 (673)
|+|+||+++. .|||++|+|++..+ . ++++|+||.+ .|||++.+.|+++|+++++++.|.|||
T Consensus 175 -G~K~~vs~~~-~Ad~~lv~a~~~~~---~------~~~~flV~~~-------~~Gv~~~~~~~~~G~r~t~s~~v~f~~ 236 (412)
T PLN02526 175 -GQKRWIGNST-FADVLVIFARNTTT---N------QINGFIVKKG-------APGLKATKIENKIGLRMVQNGDIVLKD 236 (412)
T ss_pred -EEEeeecCCC-ccCEEEEEEEeCCC---C------CeEEEEEcCC-------CCCeEcCCCCCccCcCCCCeeEEEEee
Confidence 9999999999 99999999997521 2 6889999964 599999999999999999999999999
Q ss_pred eecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 048624 279 VRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVS 358 (673)
Q Consensus 279 v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~ 358 (673)
|+||++++|+. . .++......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 237 v~Vp~~~~l~~----------------~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~------ 293 (412)
T PLN02526 237 VFVPDEDRLPG----------------V-NSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP------ 293 (412)
T ss_pred EEECHHHhCCC----------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCc------
Confidence 99999999964 1 134556677889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccC
Q 048624 359 ILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAA 438 (673)
Q Consensus 359 i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 438 (673)
|+++|.+|+++++|.+++++++.+ .+.+++..+.+. .....++++|+++++.+.++++.|+|+|||+||++
T Consensus 294 i~~~q~vq~~la~~~~~l~aar~~----~~~aa~~~d~~~-----~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~ 364 (412)
T PLN02526 294 LAAFQINQEKLVRMLGNIQAMFLV----GWRLCKLYESGK-----MTPGHASLGKAWITKKARETVALGRELLGGNGILA 364 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 999999999999999999996554 455555555441 12345789999999999999999999999999999
Q ss_pred ccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 439 VNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 439 ~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
+++++|+|||+++..+++|++++++..+++.+++.
T Consensus 365 ~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 365 DFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred cCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999853
No 22
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.8e-52 Score=453.72 Aligned_cols=368 Identities=23% Similarity=0.296 Sum_probs=319.9
Q ss_pred cCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 49 ERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 49 l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
++++++++++ +.+++.+. +.+ ...+.++.+. +++++|+.+.+.||+++.+|++ ++.++..++|++++.|
T Consensus 2 ~~~~~~~l~~~~~~~~~~~-~~~--~a~~~d~~~~-~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~ 77 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKE-IAP--LAAKIDRDNE-FPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRAS 77 (376)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCc--chHHHHhhCC-CCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccc
Confidence 5678888888 77777665 222 2223343333 4588999999999999999975 7889999999999999
Q ss_pred hhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCce
Q 048624 122 MSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAI 201 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~ 201 (673)
+++++.+..|..++...|..+|+++|+++|++++.+|++++++++|||++|||+..++|+|+++ ++||+|| |+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~-----G~ 150 (376)
T cd01156 78 GSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN-----GS 150 (376)
T ss_pred hhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE-----EE
Confidence 9999887777766677899999999999999999999999999999999999999999999998 8999999 99
Q ss_pred eeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceec
Q 048624 202 KWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281 (673)
Q Consensus 202 K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~V 281 (673)
|+|++++. .||+++|+|++..+++. .++.+|+||.+ .|||++.+.|+++|+++++++.|.|+||+|
T Consensus 151 k~~vs~~~-~a~~~lv~a~~~~~~~~------~~~~~~lv~~~-------~~gv~~~~~~~~~G~~~~~~~~v~~~~v~V 216 (376)
T cd01156 151 KMWITNGP-DADTLVVYAKTDPSAGA------HGITAFIVEKG-------MPGFSRAQKLDKLGMRGSNTCELVFEDCEV 216 (376)
T ss_pred EEEecCCC-cCCEEEEEEEeCCCCCC------CceEEEEEcCC-------CCCeecCCccccccCCCCCceEEEeCceEe
Confidence 99999999 99999999997643322 27899999965 599999999999999999999999999999
Q ss_pred CcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 048624 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILD 361 (673)
Q Consensus 282 P~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~ 361 (673)
|++++|+. ++.|+..++..+..+|+.+++.++|+++++++.+++|+++|+|||+| |.+
T Consensus 217 p~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~------i~~ 274 (376)
T cd01156 217 PEENILGG----------------ENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQP------IGE 274 (376)
T ss_pred cHHHcCCC----------------CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc------hHH
Confidence 99999985 35677777888999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccc
Q 048624 362 YQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNR 441 (673)
Q Consensus 362 ~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 441 (673)
+|.+|+++++|.+++++++++ ++.+++..+.+. .....++.+|.++++.+.++++.++++|||+||+.+++
T Consensus 275 ~~~v~~~la~~~~~l~aar~~----~~~aa~~~d~~~-----~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 345 (376)
T cd01156 275 FQLVQGKLADMYTRLNASRSY----LYTVAKACDRGN-----MDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYP 345 (376)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCH
Confidence 999999999999999996554 444455555442 12345677899999999999999999999999999999
Q ss_pred hhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 442 FGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 442 l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
++|+|||++...+++|++++++..+++.++|
T Consensus 346 l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 346 TGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999988764
No 23
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.4e-52 Score=452.20 Aligned_cols=364 Identities=19% Similarity=0.246 Sum_probs=313.5
Q ss_pred CCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchh
Q 048624 51 KAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMS 123 (673)
Q Consensus 51 ~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s 123 (673)
++|+++++ +++++.+. +.+ ...+.++... .++++|+.+++.||+++.+|++ ++.+...++|++++.+.+
T Consensus 1 ~~~~~l~~~~~~~~~~~-~~~--~~~~~d~~~~-~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~ 76 (372)
T cd01160 1 EEHDAFRDVVRRFFAKE-VAP--FHHEWEKAGE-VPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS 76 (372)
T ss_pred ChHHHHHHHHHHHHHHh-Cch--hHHHHHhhCC-CCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch
Confidence 46777877 77777665 222 2233344333 4588999999999999999975 789999999999996554
Q ss_pred hHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceee
Q 048624 124 LGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKW 203 (673)
Q Consensus 124 ~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~ 203 (673)
++.+.+|..++...+..+|+++|+++|++++.+|+.++|+++|||++|||+..++|+|+++ +++|+|| |+|.
T Consensus 77 -~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~-----G~k~ 148 (372)
T cd01160 77 -GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN-----GSKT 148 (372)
T ss_pred -HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----eEEE
Confidence 5667777666777889999999999999999999999999999999999999999999998 7899999 9999
Q ss_pred eccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCc
Q 048624 204 WIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPR 283 (673)
Q Consensus 204 ~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~ 283 (673)
|++++. .||+++|+|++..++.. +.++.+|+||.+ .|||++.+.|+++|+++++++.|.|+||+||.
T Consensus 149 ~vs~~~-~Ad~~~v~a~~~~~~~~-----~~~~~~~lv~~~-------~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~ 215 (372)
T cd01160 149 FITNGM-LADVVIVVARTGGEARG-----AGGISLFLVERG-------TPGFSRGRKLKKMGWKAQDTAELFFDDCRVPA 215 (372)
T ss_pred EecCCC-ccCEEEEEEEeCCCCCC-----CCceEEEEEeCC-------CCCeecCCccccccCCCCCeEEEEecceEccH
Confidence 999999 99999999998654221 137899999954 59999999999999999999999999999999
Q ss_pred ccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccH
Q 048624 284 DNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363 (673)
Q Consensus 284 ~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q 363 (673)
+++||. ++.|+......+..+|+.+++.++|+++++++.+++|+++|+|||+| |.++|
T Consensus 216 ~~~lg~----------------~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~------i~~~q 273 (372)
T cd01160 216 ENLLGE----------------ENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKT------LAQLQ 273 (372)
T ss_pred HHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc------HHhhH
Confidence 999986 45677777888899999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchh
Q 048624 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFG 443 (673)
Q Consensus 364 ~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~ 443 (673)
.+|++|+++.+++++++.+. +.+++..+.+. .....++++|+++++.+.++++.++++|||.||+.+++++
T Consensus 274 ~vq~~la~~~~~~~~a~~~~----~~aa~~~~~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~ 344 (372)
T cd01160 274 VVRHKIAELATKVAVTRAFL----DNCAWRHEQGR-----LDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIA 344 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHH
Confidence 99999999999999966554 44444444442 2245678999999999999999999999999999999999
Q ss_pred ccccccccccccCccHHHHHHHHHHHH
Q 048624 444 SLRNDHDIFQTFEGDNTVLLQQVAGDL 470 (673)
Q Consensus 444 r~~rd~~~~~~~eG~~~vl~~~ia~~l 470 (673)
|+|||+++..+++|++++++.++++.+
T Consensus 345 r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 345 RAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 24
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-51 Score=464.49 Aligned_cols=340 Identities=20% Similarity=0.223 Sum_probs=289.0
Q ss_pred HHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhH-HHHHhccCChhhHHhHHhhhh
Q 048624 84 CWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLW-GGSVINLGTKKHRDKYYDGID 156 (673)
Q Consensus 84 ~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~-~~~i~~~gt~eq~~~~l~~i~ 156 (673)
+++++|+.+++.||+++.+|++ +..+...++|++++.+.++++.+.+|.+++ +..|..+||++||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 4589999999999999999976 778889999999998888777677776665 457889999999999999999
Q ss_pred cCCcceeeeccCCCCCCCcCCceeEEEE---cCCCC---EEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCC
Q 048624 157 NLDYPGCFAMTELHHGSNVQGLQTVATF---DPIKD---EFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKG 230 (673)
Q Consensus 157 ~g~~~g~~a~TE~~~Gsd~~~~~TtA~~---d~~~~---~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~ 230 (673)
+|+.++|+++|||++|||+.++.|+|+. +.+|+ +|+|| |+|+|||+++ .||+++|.+++..++...+.
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~A~-~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITLAP-VATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecCcc-ccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999977652 12266 69999 9999999999 99999888875432210000
Q ss_pred CCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHH
Q 048624 231 YSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRF 310 (673)
Q Consensus 231 ~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~ 310 (673)
+++.|+++|+||.+ .|||++++.++++|+++ .++.++||||+||.+++||... .+++||
T Consensus 263 ~~~~GiT~fLVp~d-------~pGV~ig~~~~~lG~~~-~~g~v~fdDV~VP~d~lLG~~~-------------~~G~G~ 321 (774)
T PRK13026 263 KKELGITCALIPTD-------HPGVEIGRRHNPLGMAF-MNGTTRGKDVFIPLDWIIGGPD-------------YAGRGW 321 (774)
T ss_pred CCCCceEEEEEECC-------CCCeEeeccccccccCc-ccceEEEeeeEccHHHhcCCcc-------------cCChHH
Confidence 12348999999964 69999999999999987 4699999999999999998510 137899
Q ss_pred HHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 311 AATLGELVGGR-VGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEK 389 (673)
Q Consensus 311 ~~~~~~l~~~r-l~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~ 389 (673)
..++..++.+| +.+++.++|+++.|++.+++|+++|+|||+| |++||.+|++|++|.+.++.++++. .+++.
T Consensus 322 ~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~p------Ig~fQ~Vq~~LAdma~~~y~lEaaR-~l~~~ 394 (774)
T PRK13026 322 RMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMP------IGQFEGVQEALARIAGNTYLLEAAR-RLTTT 394 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ccccHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999 8999999999999999999999999999999 9999999999999999766655553 33333
Q ss_pred HHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCc--cchhccccccccccccCccHHHHHHH
Q 048624 390 YSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAV--NRFGSLRNDHDIFQTFEGDNTVLLQQ 465 (673)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~--~~l~r~~rd~~~~~~~eG~~~vl~~~ 465 (673)
. .+.+ ......++++|+++++.+.+++++|+|+|||.||+.+ ++++++|||+++..|+||+|++++..
T Consensus 395 a---~D~G-----~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 395 G---LDLG-----VKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred H---HHCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 2 2444 2234678999999999999999999999999999998 89999999999999999999999864
No 25
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=4.1e-52 Score=450.03 Aligned_cols=362 Identities=21% Similarity=0.212 Sum_probs=310.1
Q ss_pred cCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccc
Q 048624 49 ERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVD 121 (673)
Q Consensus 49 l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~ 121 (673)
|+++++++++ +++++.+. +.+ .....++... +++++|+.+.+.||+++.+|++ ++.+...++|++++.|
T Consensus 1 ~t~~~~~l~~~~~~~~~~~-~~p--~~~~~d~~~~-~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~ 76 (372)
T TIGR03207 1 LNEDLQALADTARRFARER-IAP--GFKERDKTRV-LDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARAD 76 (372)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCc--chHHHHhhCC-CCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 4678888888 77777665 222 2223343333 4589999999999999999975 7889999999999999
Q ss_pred hhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCce
Q 048624 122 MSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAI 201 (673)
Q Consensus 122 ~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~ 201 (673)
+++++....+ .+++..+..+|+++|+++||+++.+|+.++++++|||++|||+.++.|+|+++ +|+|+|| |+
T Consensus 77 ~s~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln-----G~ 148 (372)
T TIGR03207 77 LSMSYVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN-----GE 148 (372)
T ss_pred ccHHHHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE-----EE
Confidence 9988754433 35566788899999999999999999999999999999999999999999988 8899999 99
Q ss_pred eeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceec
Q 048624 202 KWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRI 281 (673)
Q Consensus 202 K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~V 281 (673)
|+|||+++ .||+++|+|++..++.. +.++.+|+||.+ .|||++. .|+++|+++++++.|.|+||+|
T Consensus 149 k~~vs~~~-~ad~~lv~a~~~~~~~~-----~~~~~~~lVp~~-------~~gv~~~-~~~~~G~r~~~~~~v~f~~v~V 214 (372)
T TIGR03207 149 KTSISAAD-QADAAVVFARTGSEAEG-----ARGISAFLVPMD-------LPGITRN-RFDCHGQRAIGRGSIFFENVRV 214 (372)
T ss_pred EEEEcCCC-cCCEEEEEEEcCCCCCC-----CCceEEEEEcCC-------CCCeecC-cchhccCCCCCeeEEEECceec
Confidence 99999999 99999999997543211 127899999964 5999985 5899999999999999999999
Q ss_pred CcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 048624 282 PRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILD 361 (673)
Q Consensus 282 P~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~ 361 (673)
|.+++|+. ++.|+......+...|+.+++.++|+++++++.+++|+++|+|||+| |.+
T Consensus 215 p~~~~lg~----------------~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~------i~~ 272 (372)
T TIGR03207 215 PADHMLGN----------------EGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKP------LSA 272 (372)
T ss_pred cHHHcCCC----------------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc------hhh
Confidence 99999975 45677777888999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccc
Q 048624 362 YQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNR 441 (673)
Q Consensus 362 ~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 441 (673)
+|.+|++|++|.+.+++++++. +.+++..+.+ ......++++|.++++.+.++++.|+|+|||.||+.+ +
T Consensus 273 ~q~v~~~la~~~~~~~~ar~l~----~~aa~~~~~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~ 342 (372)
T TIGR03207 273 FQGVSHPLADAETQVEAARLLC----LQTLWLKDHG-----LPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-D 342 (372)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-h
Confidence 9999999999999999965544 4444445544 2223467899999999999999999999999999999 9
Q ss_pred hhccccccccccccCccHHHHHHHHHH
Q 048624 442 FGSLRNDHDIFQTFEGDNTVLLQQVAG 468 (673)
Q Consensus 442 l~r~~rd~~~~~~~eG~~~vl~~~ia~ 468 (673)
++|+|||++..++++|++++++..|++
T Consensus 343 l~r~~rd~~~~~i~~Gt~~~~~~~i~~ 369 (372)
T TIGR03207 343 MEQRLRDVLGFQIGDGTAQIMKTIIAR 369 (372)
T ss_pred HHHHHhHhhheeecCCHHHHHHHHHhh
Confidence 999999999999999999999999886
No 26
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=6e-51 Score=428.60 Aligned_cols=344 Identities=28% Similarity=0.396 Sum_probs=316.1
Q ss_pred HHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcC
Q 048624 85 WRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNL 158 (673)
Q Consensus 85 ~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g 158 (673)
+...++.++++|++++.+|.+ ...++..+.|.++.+|.++++.++.|.++....|..+||++||++|||++++|
T Consensus 111 ~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg 190 (634)
T KOG0137|consen 111 EETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASG 190 (634)
T ss_pred chhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcC
Confidence 477889999999999999976 67889999999999999999999999888888999999999999999999999
Q ss_pred CcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEE
Q 048624 159 DYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHA 238 (673)
Q Consensus 159 ~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~ 238 (673)
+.+++||+|||..|||..++.|+|+.-|+++.|+|| |.|.||+|++ .||+++|||++..++.+ +...+++++
T Consensus 191 ~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn~g-~Adif~VfAqt~~~~~~--g~~k~k~T~ 262 (634)
T KOG0137|consen 191 KLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISNGG-LADIFTVFAQTEVDPAD--GEVKRKITA 262 (634)
T ss_pred CccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEecCc-cceeeeeeeccccCCCC--ccccCceEE
Confidence 999999999999999999999999999999999999 9999999999 99999999999854433 234468999
Q ss_pred EEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHh
Q 048624 239 FIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELV 318 (673)
Q Consensus 239 FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~ 318 (673)
|||+ |+ ..||+-++...|||.+|++.+.|.|++|.||.+|+||. +++||++.+..++
T Consensus 263 Flve-r~------~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~----------------~G~G~kva~niln 319 (634)
T KOG0137|consen 263 FLVE-RD------FGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK----------------PGDGFKVAMNILN 319 (634)
T ss_pred EEEe-cc------ccCccCCCchhhhcccccceeeeeeccccccHHHhcCC----------------CCcchHHHHHHHc
Confidence 9999 66 68999999999999999999999999999999999997 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 048624 319 GGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHD 398 (673)
Q Consensus 319 ~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~ 398 (673)
.+|+.+++..+|+++++++.+.+|+..|+|||.+ +.++..+|.++++|...+|+++++. +..+...|+..
T Consensus 320 sgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~------L~~~~l~q~k~~~m~~~~Ya~ESm~----yl~sg~~D~~~ 389 (634)
T KOG0137|consen 320 SGRFGMAAALLGLMKRIIEEAADYATNRTQFGKK------LHDFGLIQEKVAEMASKVYATESML----YLLSGLMDEVG 389 (634)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhhcceecCcc------hhhhhhHHHHHHHHHHHHHHHHHHH----HHHhccccccc
Confidence 9999999999999999999999999999999999 9999999999999999999987664 34455566522
Q ss_pred cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 399 EQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 399 ~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
..+.+.++++.|.|+++.++.++.+++|++||+||+.+.++++.+||++.++|+||+|++++..||.--+.
T Consensus 390 ---a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 390 ---AKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred ---ceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 26788899999999999999999999999999999999999999999999999999999999988865543
No 27
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.2e-50 Score=439.03 Aligned_cols=366 Identities=27% Similarity=0.410 Sum_probs=318.6
Q ss_pred CCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchh
Q 048624 51 KAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMS 123 (673)
Q Consensus 51 ~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s 123 (673)
+++.++++ +.+++.++ + .+ ...+.++.+. ++.++|+.+.+.||+++.+|++ ++.++..+++++++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~-~-~~-~a~~~d~~~~-~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s 76 (373)
T cd01158 1 EEHQMIRKTVRDFAEKE-I-AP-LAAEMDEKGE-FPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDAS 76 (373)
T ss_pred ChHHHHHHHHHHHHHHh-c-cc-chHHHhhcCC-CCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCcc
Confidence 35677777 77777654 2 21 1223344333 3488999999999999999965 788999999999999999
Q ss_pred hHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceee
Q 048624 124 LGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKW 203 (673)
Q Consensus 124 ~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~ 203 (673)
+++.+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..++|+|+++ ++||+|| |+|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~ 149 (373)
T cd01158 77 VAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN-----GSKM 149 (373)
T ss_pred HHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe-----eEEE
Confidence 99998888767778888999999999999999999999999999999999999999999998 8999999 9999
Q ss_pred eccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCc
Q 048624 204 WIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPR 283 (673)
Q Consensus 204 ~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~ 283 (673)
|++++. .|||++|.|+...+++.. ++.+|+||.+ .|||++.+.|+++|+++++++.+.|+||+||.
T Consensus 150 ~vsg~~-~ad~~lv~a~~~~~~~~~------~~~~~lvp~~-------~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~ 215 (373)
T cd01158 150 WITNGG-EADFYIVFAVTDPSKGYR------GITAFIVERD-------TPGLSVGKKEDKLGIRGSSTTELIFEDVRVPK 215 (373)
T ss_pred EEcCCC-cCCEEEEEEEcCCCCCCC------ceEEEEEcCC-------CCCeecCCcccccccCCCCceEEEeCcEEecH
Confidence 999999 999999999975432222 7899999965 59999999999999999999999999999999
Q ss_pred ccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccH
Q 048624 284 DNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQ 363 (673)
Q Consensus 284 ~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q 363 (673)
+++|+. ++.|+......+..+|+.+++.++|+++++++++++|+++|+|||.| +.++|
T Consensus 216 ~~~lg~----------------~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~------~~~~~ 273 (373)
T cd01158 216 ENILGE----------------EGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKP------IADFQ 273 (373)
T ss_pred HHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCc------HHHhH
Confidence 999975 35677777788889999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchh
Q 048624 364 SQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFG 443 (673)
Q Consensus 364 ~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~ 443 (673)
.+|++++++.+.+++++.+. +.+++..+.+ .+....++.+|+++++.+.++++.+++++||.||+.+++++
T Consensus 274 ~v~~~la~~~~~l~aa~~~~----~~aa~~~~~~-----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~ 344 (373)
T cd01158 274 GIQFKLADMATEIEAARLLT----YKAARLKDNG-----EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVE 344 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHH
Confidence 99999999999999966554 4444444443 23345678999999999999999999999999999999999
Q ss_pred ccccccccccccCccHHHHHHHHHHHHHH
Q 048624 444 SLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 444 r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
++|||++...+++|++++++.++++.+||
T Consensus 345 r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 345 RYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999875
No 28
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=5.9e-50 Score=436.24 Aligned_cols=340 Identities=18% Similarity=0.226 Sum_probs=291.6
Q ss_pred HHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchh-hHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhc
Q 048624 85 WRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMS-LGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDN 157 (673)
Q Consensus 85 ~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s-~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~ 157 (673)
++++|+.+.++||+++.+|++ ++.+++.++|++++.+.+ .++...++.......|..+|+++|+++|+|++.+
T Consensus 43 ~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~ 122 (394)
T cd01155 43 IEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLD 122 (394)
T ss_pred HHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhC
Confidence 478999999999999999965 789999999999998633 2222222212234578899999999999999999
Q ss_pred CCcceeeeccCCC-CCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccc-cCcEEEEEEEEecCCCCCCCCCCCc
Q 048624 158 LDYPGCFAMTELH-HGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAV-HGKFATVFAKLMLPTHDSKGYSDMG 235 (673)
Q Consensus 158 g~~~g~~a~TE~~-~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~-~A~~~vV~Ar~~~~g~~~~~~~~~g 235 (673)
|+.++|+++|||+ .|||+..+.|+|+++ +|+|+|| |+|+|+|++.. .+++++|+|++..++.+ ++.+
T Consensus 123 G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~Ln-----G~k~~vs~~~~~~a~~~~v~a~~~~~~~~----~~~~ 191 (394)
T cd01155 123 GKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVIN-----GRKWWSSGAGDPRCKIAIVMGRTDPDGAP----RHRQ 191 (394)
T ss_pred CCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEEE-----EEEEEEcCCCCCCCCEEEEEEEeCCCcCC----CCCc
Confidence 9999999999997 679999999999998 8999999 99999999961 47899999998643221 1237
Q ss_pred eEEEEEeecCCCCCCCCCCeEEecCCCCccCCC--CCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHH
Q 048624 236 VHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNG--VDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAAT 313 (673)
Q Consensus 236 ~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~--~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~ 313 (673)
+.+|+||.+ .|||++.+.|+++|+++ ++++.|.|+||+||++++|+. +++|+...
T Consensus 192 ~~~flVp~~-------~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~----------------~~~g~~~~ 248 (394)
T cd01155 192 QSMILVPMD-------TPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILG----------------EGRGFEIA 248 (394)
T ss_pred eEEEEEeCC-------CCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCC----------------CChHHHHH
Confidence 899999964 69999999999999997 578999999999999999975 45678888
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 314 LGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEM 393 (673)
Q Consensus 314 ~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~ 393 (673)
...+..+|+..++.++|+++++++.+++|+++|+|||+| |.++|.+|++|++|.+.+++++++ ++.+++.
T Consensus 249 ~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~------i~~~q~vq~~la~~~~~l~aar~l----~~~aa~~ 318 (394)
T cd01155 249 QGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKK------LAQHGVVAHWIAKSRIEIEQARLL----VLKAAHM 318 (394)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCc------HhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 888999999999999999999999999999999999999 999999999999999999996544 4555555
Q ss_pred hccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHH
Q 048624 394 KKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLL 471 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll 471 (673)
.+.+.. .+....++++|+++++.+.++++.|+|+|||+||+.+++++|+|||++...+++|++++++..+++.++
T Consensus 319 ~~~~~~---~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 319 IDTVGN---KAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred HhCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 554210 224567899999999999999999999999999999999999999999999999999999999998875
No 29
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=8.5e-50 Score=434.30 Aligned_cols=368 Identities=20% Similarity=0.255 Sum_probs=301.7
Q ss_pred hhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHH---HHHHHHHHHHHcCCCCccccCC------CHHHHHHHHH
Q 048624 46 WLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHREL---CWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAE 115 (673)
Q Consensus 46 ~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e 115 (673)
||.+++||+++++ +++|+.++.. + .......+.... ..+++|+.+.++||+++.+|++ ++.+.+.++|
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~-~-~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~e 78 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVP-A-DTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNE 78 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-h-hhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHH
Confidence 5778999999999 7777776522 1 111101111110 1147999999999999999975 7899999999
Q ss_pred HHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEec
Q 048624 116 AVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINT 195 (673)
Q Consensus 116 ~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 195 (673)
++++.+.+.++.+.++ +.+..|..+|+++|+++|||++.+|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 79 elg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln- 153 (395)
T TIGR03204 79 ELQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN- 153 (395)
T ss_pred HHHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe-
Confidence 9999998876543332 4455788899999999999999999999999999999999999999999988 8899999
Q ss_pred CCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEE
Q 048624 196 PNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALR 275 (673)
Q Consensus 196 P~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~ 275 (673)
|+|+||+++. .||+++|+|++..++.. ++|+++|+||.+ .|||++.+...+.| +.+++.|.
T Consensus 154 ----G~K~~vt~a~-~Ad~~lv~a~~~~~~~~-----~~g~~~flV~~~-------~~Gv~~~~~~~~~~--~~~~~~v~ 214 (395)
T TIGR03204 154 ----GQKTWTTLAQ-HADWIFCLCRTDPTAKK-----QMGISFILVDMK-------SKGITVRPIQTIDG--GVEVNEVF 214 (395)
T ss_pred ----eEEEeecCCc-cCCeEEEEEEeCCCCCC-----CCCeEEEEEeCC-------CCCeEecChhhccC--CCceeEEE
Confidence 9999999999 99999999997532111 137999999964 69999987655554 67899999
Q ss_pred ecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 048624 276 FCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKP 355 (673)
Q Consensus 276 fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 355 (673)
|+||+||.+++||. ++.++...+..+...|+.+++ +|+++++++.+++|+++|+|||+|
T Consensus 215 f~~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~--- 273 (395)
T TIGR03204 215 FDDVEVPYENLVGE----------------ENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKP--- 273 (395)
T ss_pred EcceEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCc---
Confidence 99999999999975 356788888899999999876 899999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHH----
Q 048624 356 EVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMK-KTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREA---- 430 (673)
Q Consensus 356 e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~---- 430 (673)
|++||.+|++|++|.+.+++++.+. +.+++.. +.+. ......++++|.++++.+.+++++|+|+
T Consensus 274 ---i~~~q~vq~~la~~~~~~~aar~l~----~~aa~~~~~~~~----~~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~ 342 (395)
T TIGR03204 274 ---VIEDAKFREKLAAVEIELKALELTQ----LRVVADEGKHGK----GKPNPASSVLKIKGSEIQQATTELLMEVIGPF 342 (395)
T ss_pred ---cccCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999965544 3333221 2111 1123578999999999999999999985
Q ss_pred ------hCccCccCc----cchhccccccccccccCccHHHHHHHHHHHHH
Q 048624 431 ------CGGHGYAAV----NRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLL 471 (673)
Q Consensus 431 ------~Gg~Gy~~~----~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll 471 (673)
|||.||+.+ ++++++|||.+...+++|++++++..|++.+|
T Consensus 343 ~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 343 AAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 889999865 47999999999999999999999999999876
No 30
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-51 Score=393.89 Aligned_cols=374 Identities=22% Similarity=0.305 Sum_probs=324.1
Q ss_pred chHhhhhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccC-----CCHHHHHHHH
Q 048624 41 LCAVIWLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVA-----EDPAQYFAIA 114 (673)
Q Consensus 41 ~~~~m~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~-----~~~~~~~~~~ 114 (673)
++..++..|++|+..+++ .+....++ +.|. -.+. -+.+.+++++...+..+|++|..+-. -+...+..+.
T Consensus 47 D~~~l~dqLT~dE~air~~~Reycq~~-l~Pr--vtea-~r~e~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~ 122 (432)
T KOG0138|consen 47 DPLVLEDQLTEDEIAIRDTFREYCQER-LMPR--VTEA-NRNEVFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLA 122 (432)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHHH-hhhH--HHHH-hhhccCChhhhhhhhccccccCcccCcCCCchHHHHHHHHH
Confidence 344577789999999999 55555554 4432 1111 11233458888889999999887753 3677888999
Q ss_pred HHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEe
Q 048624 115 EAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIIN 194 (673)
Q Consensus 115 e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLn 194 (673)
.|+.+.|.+....+++|.+++..+|..+|+|+||++|||.+++|+.+|||++|||.||||..+++|+|+||..+..|.||
T Consensus 123 rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN 202 (432)
T KOG0138|consen 123 REVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN 202 (432)
T ss_pred HHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999877789999
Q ss_pred cCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeE
Q 048624 195 TPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGAL 274 (673)
Q Consensus 195 tP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l 274 (673)
|+|.||+|++ .||.+||+||...++ .+.-|||.. + +||.+...+..|+++|.+.+|.|
T Consensus 203 -----GsKtWI~nsp-~aDl~vvwAr~~t~n---------~I~GFi~~k-~------~~GL~apkI~gK~sLRas~tG~I 260 (432)
T KOG0138|consen 203 -----GSKTWITNSP-MADLFVVWARCETDN---------KIRGFILEK-G------MRGLSAPKIEGKFSLRASATGMI 260 (432)
T ss_pred -----CeeeeecCCc-ccceEEEEEecccCC---------ceeeEEEec-C------CCCCcCCCcCCeeeeeecccCce
Confidence 9999999999 999999999986533 588899994 4 79999999999999999999999
Q ss_pred EecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 048624 275 RFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRK 354 (673)
Q Consensus 275 ~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 354 (673)
.+|+|+||++++|.. ..+|.-....++..|+++|..++|++..+++++.+|+..|+|||.|
T Consensus 261 lmd~V~VPeE~~LPg-----------------~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~P-- 321 (432)
T KOG0138|consen 261 LMDGVEVPEENLLPG-----------------ASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRP-- 321 (432)
T ss_pred eecCCcCChhhcCCC-----------------ccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCc--
Confidence 999999999999953 1234445678999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCcc
Q 048624 355 PEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGH 434 (673)
Q Consensus 355 ~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~ 434 (673)
++.+|.+|.+|++|+.++.+.- .+.++..+..|++ ......++..|.+.+--+.++++.++++.||.
T Consensus 322 ----LAanQL~Q~Kladmltei~lgl----~~clrl~rLkd~g-----~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgN 388 (432)
T KOG0138|consen 322 ----LAANQLIQKKLADMLTEITLGL----QACLRLGRLKDQG-----KATPEQISLLKRNNCGKALEIARQARDMLGGN 388 (432)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhcc-----cCChhhhHHHhhccchhHHHHHHHHHHHhcCC
Confidence 9999999999999999988743 4445666666666 45566789999999999999999999999999
Q ss_pred CccCccchhccccccccccccCccHHHHHHHHHHHHHH
Q 048624 435 GYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLK 472 (673)
Q Consensus 435 Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 472 (673)
|.++++.+-|.+-+.....||||+-+++...++|.+-+
T Consensus 389 GI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 389 GISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred cchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 99999999999999999999999999999999988754
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.8e-49 Score=432.86 Aligned_cols=374 Identities=26% Similarity=0.383 Sum_probs=316.3
Q ss_pred hhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHH---HHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHH
Q 048624 46 WLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDD---HRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAE 115 (673)
Q Consensus 46 ~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e 115 (673)
.+.+++++.++++ +.+++.+... + .....+. .+. .++++++.+.+.|++++.+|++ ++.....+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e 77 (393)
T COG1960 2 DFDLSEEQEALRAEVREFAEEELA-P--EAAEIDRRIEDER-FPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLE 77 (393)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcC-c--chhhhhhhccccc-CHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHH
Confidence 4445566777777 6777766532 1 1111121 233 3478999999999999999976 6677889999
Q ss_pred HHhccchhhHHHHHHhHhh---HHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCce-eEEEEcCCCCEE
Q 048624 116 AVGSVDMSLGIKMGVQYSL---WGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQ-TVATFDPIKDEF 191 (673)
Q Consensus 116 ~la~~~~s~~~~~~~h~~l---~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~-TtA~~d~~~~~~ 191 (673)
++++.+++.+..+.++... ....+..+|+++|+++|||++.+|+.++|+++|||++|||+.++. |+++++ +|+|
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~ 155 (393)
T COG1960 78 ELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDY 155 (393)
T ss_pred HHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCE
Confidence 9999998776655555432 233677799999999999999999999999999999999999998 667665 4559
Q ss_pred EEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCc
Q 048624 192 IINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDN 271 (673)
Q Consensus 192 vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~ 271 (673)
+|| |+|+|||++. .|||++|+|++..+++ +++|+++|+||.+. .|||++.+.+.+.|++++++
T Consensus 156 ~ln-----G~K~~is~~~-~ad~~~v~Ar~~~~~~-----~~~gis~flV~~~~------~~Gv~~~~~~~~~G~r~~~~ 218 (393)
T COG1960 156 VLN-----GQKIWISNAP-VADWLLVLARTDPAPG-----KHKGISLFLVPKDL------TPGVSVGPILKKMGLRGSAT 218 (393)
T ss_pred EEE-----eEEEEEcCCC-CCCEEEEEEEcCCccc-----ccCceEEEEEeCCC------CCCeeeccccCcCCcCCCCe
Confidence 999 9999999999 9999999999976541 24599999999652 39999999875339999999
Q ss_pred eeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 048624 272 GALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGP 351 (673)
Q Consensus 272 ~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~ 351 (673)
+.+.|+||+||.+++||. ++.||..+...+..+|+.+++.++|.+++|++.+++|+++|+|||+
T Consensus 219 ~~v~f~~v~vp~~~lig~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~ 282 (393)
T COG1960 219 GEVFFDDVRVPAENLLGE----------------EGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR 282 (393)
T ss_pred eEEEECCeeccHHHcCCc----------------CCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC
Confidence 999999999999999984 5789999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 048624 352 PRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREAC 431 (673)
Q Consensus 352 ~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~ 431 (673)
| |+++|.+|++|+++.+.+++++. +++..++..+.+. .....++++|.++++.+.++++.++|+|
T Consensus 283 ~------i~~~~~vq~~la~~~~~~~a~r~----~~~~aa~~~~~~~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~ 347 (393)
T COG1960 283 P------IADFQLVQFKLADMAAELEAARL----LVLRAAELADAGD-----DAGAEAAMAKLFATEAALEVADEAVQVH 347 (393)
T ss_pred c------hhhcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 99999999999999999999655 4455666666542 2237899999999999999999999999
Q ss_pred CccCccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 432 GGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 432 Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
||.||+.+++++|+|||++...+++|++++++..+++.+++.
T Consensus 348 Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 348 GGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred cCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999875
No 32
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-46 Score=419.25 Aligned_cols=349 Identities=18% Similarity=0.265 Sum_probs=287.1
Q ss_pred HHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCC
Q 048624 86 RQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLD 159 (673)
Q Consensus 86 ~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 159 (673)
+++|+.+.+.||+++.+|++ +......+.|.++..+++++.....+. .....|..+|+++||++|||++.+|+
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe 180 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGE 180 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 68999999999999999975 454344445556667776654433332 23568899999999999999999999
Q ss_pred cceeeeccCCCCCCCcCCceeEEEEcCCCC-EEEEecCCCCceeeeccCccccC----cEEEEEEEEecCCCCCCCCCCC
Q 048624 160 YPGCFAMTELHHGSNVQGLQTVATFDPIKD-EFIINTPNDGAIKWWIGNAAVHG----KFATVFAKLMLPTHDSKGYSDM 234 (673)
Q Consensus 160 ~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~-~~vLntP~~~G~K~~i~~~~~~A----~~~vV~Ar~~~~g~~~~~~~~~ 234 (673)
+++++++|||++|||+..++|+|+++ +| +|+|| |+|+||++++ ++ ++++|+||+..+.+ +++
T Consensus 181 ~~~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~g~-~~~~~n~~~lVlAr~~~~~~-----g~~ 247 (622)
T PTZ00456 181 WSGTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISAGD-HDLTENIVHIVLARLPNSLP-----TTK 247 (622)
T ss_pred hhhhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecCCc-hhhccCcEEEEEEEecCCCC-----CCC
Confidence 99999999999999999999999988 54 69999 9999999998 63 67899999864321 124
Q ss_pred ceEEEEEeecCC---CCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHH
Q 048624 235 GVHAFIVPIRDM---KTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA 311 (673)
Q Consensus 235 g~~~FlV~~rd~---~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~ 311 (673)
|+++|+||.+.. .+....+||++..+.+|+|+++++++.|.||| |.+++||+ +++|+.
T Consensus 248 GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~llG~----------------~~~Gl~ 308 (622)
T PTZ00456 248 GLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGYLIGE----------------PNAGMK 308 (622)
T ss_pred ceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHhhcCC----------------CChHHH
Confidence 899999997432 11223579999999999999999999999999 46899986 578899
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC------CcccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 312 ATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRK------PEVSILDYQSQQHKLMPMLASTYAFHFATAN 385 (673)
Q Consensus 312 ~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~------~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~ 385 (673)
.++..|+.+|+.+++.++|++++|++.+++|+++|+||+.+.+ ...||+++|.+|++|++|.+.+++++++.
T Consensus 309 ~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~-- 386 (622)
T PTZ00456 309 QMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALL-- 386 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999855422 35679999999999999999999966554
Q ss_pred HHHHHHHHhccCC----cc----hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCc
Q 048624 386 LVEKYSEMKKTHD----EQ----LVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEG 457 (673)
Q Consensus 386 l~~~~~~~~~~~~----~~----~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG 457 (673)
+.+++..|.+. .. ........++++|+++++.+.++++.|+|+|||+||+++++++++|||+++..++||
T Consensus 387 --~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eG 464 (622)
T PTZ00456 387 --LDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEG 464 (622)
T ss_pred --HHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCC
Confidence 44444444321 00 001234678999999999999999999999999999999999999999999999999
Q ss_pred cHHHHH-HHHHHHHH
Q 048624 458 DNTVLL-QQVAGDLL 471 (673)
Q Consensus 458 ~~~vl~-~~ia~~ll 471 (673)
+++++. ..++|.++
T Consensus 465 t~~iq~~dli~rkll 479 (622)
T PTZ00456 465 TTGIQALDFIGRKVL 479 (622)
T ss_pred hHHHHHHHHHHHHhh
Confidence 999997 58888887
No 33
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=6.1e-48 Score=454.26 Aligned_cols=379 Identities=17% Similarity=0.222 Sum_probs=309.3
Q ss_pred hhhcCCCHHHHHH-HHHHHhcCCCCCCCccCCHHHH---H-HHHH-HHHHHHH-HHcCCCCccccCC-------------
Q 048624 46 WLYERKAQGDTRE-SVEYFNSRPDLQTPVEILKDDH---R-ELCW-RQLLGLV-REAGIKPFKYVAE------------- 105 (673)
Q Consensus 46 ~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~l-~e~Gl~~~~~p~~------------- 105 (673)
.|.+++++.++++ +++|+.++ +.+.......+.. + ..++ .+.|+.+ +++||+++.+|++
T Consensus 399 ~~~~s~~~~~l~~~~~~f~~~~-~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~ 477 (822)
T PLN02876 399 RFVPSEKVLELRKKLIKFMEDH-IYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDN 477 (822)
T ss_pred CcCCCHHHHHHHHHHHHHHHHH-ccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccc
Confidence 4778999999998 77777666 3222111111110 0 1122 3566665 4999999999972
Q ss_pred -----------------CHHHHHHHHHHHhccchhhHHH-HHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeecc
Q 048624 106 -----------------DPAQYFAIAEAVGSVDMSLGIK-MGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMT 167 (673)
Q Consensus 106 -----------------~~~~~~~~~e~la~~~~s~~~~-~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~T 167 (673)
++.+...++|++|+++.+.... ..++..+.+.+|..+|+++||++||+++.+|++++|+++|
T Consensus 478 ~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~t 557 (822)
T PLN02876 478 KHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMT 557 (822)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEec
Confidence 6788999999999986542221 1222223345788999999999999999999999999999
Q ss_pred CCC-CCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCcc-ccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecC
Q 048624 168 ELH-HGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAA-VHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRD 245 (673)
Q Consensus 168 E~~-~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~-~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd 245 (673)
||+ +|||+.++.|+|+++ +|+|+|| |+|+||+++. ..||+++|+|++..++.. +.++.+|+||.+
T Consensus 558 Ep~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtga~~~~ad~~lv~ar~~~~~~~-----~~~~s~flV~~~- 624 (822)
T PLN02876 558 EPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSGAMDPRCRVLIVMGKTDFNAPK-----HKQQSMILVDIQ- 624 (822)
T ss_pred CCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecCCCCCCCCEEEEEEecCCCCCC-----CCcceEEEEeCC-
Confidence 997 789999999999998 8999999 9999999994 169999999998532211 137889999964
Q ss_pred CCCCCCCCCeEEecCCCCccCCCC--CceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHH
Q 048624 246 MKTHQTLPGIEIHDCGHKVGLNGV--DNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVG 323 (673)
Q Consensus 246 ~~~~~~~pGv~v~~~~~~~G~~~~--~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~ 323 (673)
.|||++.+.|+++|++++ +++.|.||||+||.+++|+. +++|+..+...+..+|+.
T Consensus 625 ------~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~ 682 (822)
T PLN02876 625 ------TPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLG----------------EGRGFEIAQGRLGPGRLH 682 (822)
T ss_pred ------CCCceeecccceeccCCCCCCeeEEEEcceeechhheecC----------------CCchHHHHHHHHhhhHHH
Confidence 699999999999999974 58899999999999999975 456788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh
Q 048624 324 LAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVG 403 (673)
Q Consensus 324 ~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 403 (673)
+++.++|++++|++.+++|+++|+|||+| |+++|.+|++|++|.+.+++++++ ++.+++..+.... .
T Consensus 683 ~aa~~vG~a~~ale~a~~ya~~R~~fg~~------i~~~q~vq~~la~~~~~leaar~l----~~~aa~~~d~~~~---~ 749 (822)
T PLN02876 683 HCMRLIGAAERGMQLMVQRALSRKAFGKL------IAQHGSFLSDLAKCRVELEQTRLL----VLEAADQLDRLGN---K 749 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCc------hhhCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHccCC---c
Confidence 99999999999999999999999999999 999999999999999999996544 4555555554210 2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHHHH
Q 048624 404 DVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 473 (673)
Q Consensus 404 ~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 473 (673)
+....++++|+++++.+.+++++|+|+|||+||+.+++++++|||++...+++|++++++..+++.+|+.
T Consensus 750 ~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 750 KARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 2346789999999999999999999999999999999999999999999999999999999999999864
No 34
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.6e-47 Score=413.17 Aligned_cols=341 Identities=21% Similarity=0.291 Sum_probs=287.1
Q ss_pred HHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCC
Q 048624 86 RQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLD 159 (673)
Q Consensus 86 ~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 159 (673)
.++|+.|.+.||+++.+|++ ++.++..+.|+++++|.++++.+++|. ....|..+|+++|+++|++++.+|+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~ 116 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGE 116 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 67899999999999999965 788899999999999999888776653 4556888899999999999999999
Q ss_pred cceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccC----cEEEEEEEEecCCCCCCCCCCCc
Q 048624 160 YPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHG----KFATVFAKLMLPTHDSKGYSDMG 235 (673)
Q Consensus 160 ~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A----~~~vV~Ar~~~~g~~~~~~~~~g 235 (673)
.++|+++|||++|||+..++|+|++++ +|+|+|| |+|+|+|++. +| ++++|+|++..++.. +.+
T Consensus 117 ~~~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~~~-~a~~~~~~~~v~a~~~~~~~~-----~~~ 184 (407)
T cd01153 117 WTGTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISAGE-HDMSENIVHLVLARSEGAPPG-----VKG 184 (407)
T ss_pred eeEEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeCCC-cccccccEEEEEEeCCCCCCC-----CCc
Confidence 999999999999999999999999874 4689999 9999999998 76 578899997532211 237
Q ss_pred eEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHh
Q 048624 236 VHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLG 315 (673)
Q Consensus 236 ~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~ 315 (673)
+++|+||.+..++ ..|||++.+.|+++|+++++++.|.|+||+|| +||. ++.|+...+.
T Consensus 185 ~~~flVp~~~~~~--~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~----------------~~~g~~~~~~ 243 (407)
T cd01153 185 LSLFLVPKFLDDG--ERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGE----------------EGMGLAQMFA 243 (407)
T ss_pred eEEEEEeccCcCC--CCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCC----------------CCccHHHHHH
Confidence 8999999652111 13899999999999999999999999999999 7764 4566778888
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC--CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 316 ELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPP--RKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEM 393 (673)
Q Consensus 316 ~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~--~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~ 393 (673)
.+..+|+.+++.++|+++++++.+++|+++|+|||+| ..+..++.++|.+|++|+++.+.+++++++. +.+++.
T Consensus 244 ~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~----~~aa~~ 319 (407)
T cd01153 244 MMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALD----LYTATV 319 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9999999999999999999999999999999999986 2334558899999999999999999966554 444444
Q ss_pred hccCCcc-hhhh--------HHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHH
Q 048624 394 KKTHDEQ-LVGD--------VHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQ 464 (673)
Q Consensus 394 ~~~~~~~-~~~~--------~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~ 464 (673)
.+.+... ...+ ....++++|+++++.+.++++.++++|||+||..+++++|+|||+++..+++|++++++.
T Consensus 320 ~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~ 399 (407)
T cd01153 320 QDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQAL 399 (407)
T ss_pred ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHH
Confidence 4332100 0001 245678999999999999999999999999999999999999999999999999999877
Q ss_pred H
Q 048624 465 Q 465 (673)
Q Consensus 465 ~ 465 (673)
.
T Consensus 400 ~ 400 (407)
T cd01153 400 D 400 (407)
T ss_pred H
Confidence 4
No 35
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=5.3e-47 Score=411.19 Aligned_cols=360 Identities=17% Similarity=0.224 Sum_probs=297.1
Q ss_pred CCHHHHHH-HHHHHhcCCCCCCCcc---CCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhcc
Q 048624 51 KAQGDTRE-SVEYFNSRPDLQTPVE---ILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSV 120 (673)
Q Consensus 51 ~e~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~ 120 (673)
+||+++++ +++++.++.. +.... ...++. ..++.++++.|++.||+++.+|++ ++.+++.+.|++++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~ 78 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLP-PELREESALGYREG-REDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAA 78 (380)
T ss_pred CcHHHHHHHHHHHHHhcCC-cccccccccccccc-chHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 46778888 7777776632 21111 111222 335588899999999999999975 789999999999999
Q ss_pred chhhHHH-HHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCC
Q 048624 121 DMSLGIK-MGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDG 199 (673)
Q Consensus 121 ~~s~~~~-~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~ 199 (673)
|+++++. +..+ +++..|..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|+++ +++|+||
T Consensus 79 ~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~----- 149 (380)
T cd01152 79 GAPVPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN----- 149 (380)
T ss_pred CCCcccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----
Confidence 9888765 3332 4566788999999999999999999999999999999999999999999987 7899999
Q ss_pred ceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecce
Q 048624 200 AIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSV 279 (673)
Q Consensus 200 G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v 279 (673)
|+|+||+++. .||+++|+|++..++++ +.++.+|+||.+ .|||++.+.|.++| +++++.+.|+||
T Consensus 150 G~K~~it~~~-~ad~~lv~a~~~~~~~~-----~~~~~~~lVp~~-------~~Gv~~~~~~~~~g--~~~~~~l~f~~v 214 (380)
T cd01152 150 GQKIWTSGAH-YADWAWLLVRTDPEAPK-----HRGISILLVDMD-------SPGVTVRPIRSING--GEFFNEVFLDDV 214 (380)
T ss_pred cEEEEEcCcc-ccCEEEEEEEeCCCccC-----cCCeEEEEEeCC-------CCceEeeehhhccC--CCCcceEEecCc
Confidence 9999999999 99999999997543221 137899999964 59999999988887 678999999999
Q ss_pred ecCcccccccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 048624 280 RIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSI 359 (673)
Q Consensus 280 ~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i 359 (673)
+||.+++||. ++.++..+...+...|+.+++.+.| +++.+++|+.+|.+||+| |
T Consensus 215 ~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~~~~~~~----~~~~a~~~a~~r~~~g~~------l 268 (380)
T cd01152 215 RVPDANRVGE----------------VNDGWKVAMTTLNFERVSIGGSAAT----FFELLLARLLLLTRDGRP------L 268 (380)
T ss_pred CcchhcccCC----------------CCchHHHHHHHHHhcccccchhhhH----HHHHHHHHHHHHHhcCCC------c
Confidence 9999999976 4567777777788888876654444 455667888889999998 9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCc
Q 048624 360 LDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAV 439 (673)
Q Consensus 360 ~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 439 (673)
.++|.+|++|++|.+++++++.+ ++.+++..+.+. .....++++|+++++.+.++++.+++++||.||+.+
T Consensus 269 ~~~~~vq~~la~~~~~l~~a~~l----~~~aa~~~~~~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~ 339 (380)
T cd01152 269 IDDPLVRQRLARLEAEAEALRLL----VFRLASALAAGK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRD 339 (380)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 99999999999999999996554 444455455441 223457899999999999999999999999999988
Q ss_pred --------cchhccccccccccccCccHHHHHHHHHHHHH
Q 048624 440 --------NRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLL 471 (673)
Q Consensus 440 --------~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll 471 (673)
+++++++||++...+++|++++++..+++.++
T Consensus 340 ~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 340 PAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred cccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 69999999999999999999999999998876
No 36
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.8e-46 Score=409.11 Aligned_cols=339 Identities=20% Similarity=0.204 Sum_probs=283.5
Q ss_pred HHHHHHHHHcCCCCccccC--C--CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCC--
Q 048624 86 RQLLGLVREAGIKPFKYVA--E--DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLD-- 159 (673)
Q Consensus 86 ~~~~~~l~e~Gl~~~~~p~--~--~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~-- 159 (673)
+++++.+.+.||.++ +|. + +........+.++..+.+.+.++.+|. .++.+|..+|+++|+ +|||++.+|+
T Consensus 68 ~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~ 144 (418)
T cd01154 68 HALMRRLIEEGVINI-EDGPAGEGRRHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYK 144 (418)
T ss_pred HHHHHHHHHcCCccC-CchhhCCCcHHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcc
Confidence 788899999999998 442 2 444444556677777666666665554 478899999998875 7999999997
Q ss_pred --cceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCCCCCceE
Q 048624 160 --YPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGYSDMGVH 237 (673)
Q Consensus 160 --~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~~~~g~~ 237 (673)
+++|+++|||++|||+.+++|+|+++. +|+|+|| |+|+|+|++ .||+++|+||+..+.+ +++|++
T Consensus 145 ~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~K~f~s~a--~Ad~~lv~Art~~~~~-----~~~gls 211 (418)
T cd01154 145 TGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GHKWFASAP--LADAALVLARPEGAPA-----GARGLS 211 (418)
T ss_pred cchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EEEEEecCc--ccCEEEEEEECCCCCC-----CCCcEE
Confidence 899999999999999999999999875 6889999 999999987 7999999999864322 234999
Q ss_pred EEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhH
Q 048624 238 AFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGEL 317 (673)
Q Consensus 238 ~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l 317 (673)
+|+||.+.+++ ..|||+|.+.|+++|+++++++.|.|||| .+++||. +++|+..++..+
T Consensus 212 ~flVp~~~~~~--~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~----------------~g~G~~~~~~~l 270 (418)
T cd01154 212 LFLVPRLLEDG--TRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGD----------------EGKGIYYILEML 270 (418)
T ss_pred EEEEeccCCCC--CCCCeEecccccccCCCCCCeEEEEecCc---CccccCC----------------CCccHHHHHHHH
Confidence 99999754221 13699999999999999999999999998 3788875 567888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048624 318 VGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTH 397 (673)
Q Consensus 318 ~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~ 397 (673)
..+|+.+++.++|+++++++.+++|+++|++||+| |+++|.+|++|+++.+.+++++++.... ++..+..
T Consensus 271 ~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~------l~~~~~v~~~La~~~~~~eaar~l~~~a----a~~~~~~ 340 (418)
T cd01154 271 NISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP------LIDHPLMRRDLAEMEVDVEAATALTFRA----ARAFDRA 340 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCc------hhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcc
Confidence 99999999999999999999999999999999999 9999999999999999999966554443 3434332
Q ss_pred Ccc-h--hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHH
Q 048624 398 DEQ-L--VGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLL 471 (673)
Q Consensus 398 ~~~-~--~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll 471 (673)
... . .......++++|+++++.+.+++++|+|+|||.||+.+++++++|||+++..+++|++++++..++|.|-
T Consensus 341 ~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 341 AADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 100 0 0112346788999999999999999999999999999999999999999999999999999999998874
No 37
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-45 Score=402.52 Aligned_cols=336 Identities=16% Similarity=0.152 Sum_probs=275.3
Q ss_pred HHHHHHHHHHcCCCCccccCC-CH-HHH-HHHHHH-HhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCC-
Q 048624 85 WRQLLGLVREAGIKPFKYVAE-DP-AQY-FAIAEA-VGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLD- 159 (673)
Q Consensus 85 ~~~~~~~l~e~Gl~~~~~p~~-~~-~~~-~~~~e~-la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~- 159 (673)
++++++.+.+.||.++.++++ ++ .-. ..+.+- .+..++....++++. .++..+..+|+++|+++|+|++.+|+
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDARSGAFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccCchHHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 377777788999998888643 22 111 112222 233344444444333 34556677789999999999999997
Q ss_pred ------------cceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCC
Q 048624 160 ------------YPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHD 227 (673)
Q Consensus 160 ------------~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~ 227 (673)
.++++++|||++|||+..++|+|+++. +|+|+|| |+|+||| ++ .||+++|+||+.
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G~K~fiS-a~-~AD~~lVlArt~----- 232 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----GHKWFFS-VP-QSDAHLVLAQAK----- 232 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----EEEEEEE-ch-hhCEEEEEEEEC-----
Confidence 466999999999999999999999852 6789999 9999999 57 899999999984
Q ss_pred CCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccc
Q 048624 228 SKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTIN 307 (673)
Q Consensus 228 ~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~ 307 (673)
. |+++|+||...+++ -.+||+|.+.++|+|+++.++++|.|+|| .+++||. ++
T Consensus 233 ~------Gls~FlVp~~~p~g--~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~----------------~g 285 (538)
T PRK11561 233 G------GLSCFFVPRFLPDG--QRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGE----------------EG 285 (538)
T ss_pred C------ceEEEEEECCCCCC--CCCceEEecccccccCCCCceeEEEECCH---HHHHCCC----------------CC
Confidence 2 89999999643211 13489999999999999999999999999 4889986 57
Q ss_pred hHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 308 KRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLV 387 (673)
Q Consensus 308 ~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~ 387 (673)
+|+..+...++.+|+.+++.++|++++|++.+++|+++|++||+| |+++|.+|++|++|.+.++++++ ++
T Consensus 286 ~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~------L~~~q~vq~~LAdm~~~ieaar~----l~ 355 (538)
T PRK11561 286 EGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKP------LIEQPLMRQVLSRMALQLEGQTA----LL 355 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCc------cccCHHHHHHHHHHHHHHHHHHH----HH
Confidence 889999999999999999999999999999999999999999999 99999999999999999999554 44
Q ss_pred HHHHHHhccCCcc-hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHH
Q 048624 388 EKYSEMKKTHDEQ-LVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQV 466 (673)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~i 466 (673)
+.+++..|.+... ........++++|.++++.+.+++.+|+|+|||+||+.+++++|+|||+++..|+||++++++..+
T Consensus 356 ~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv 435 (538)
T PRK11561 356 FRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDV 435 (538)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHH
Confidence 5555555544210 001134577889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 048624 467 AGDLLK 472 (673)
Q Consensus 467 a~~ll~ 472 (673)
++.+.+
T Consensus 436 ~r~l~~ 441 (538)
T PRK11561 436 LRVLNK 441 (538)
T ss_pred HHHHhc
Confidence 999875
No 38
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=4.7e-44 Score=387.86 Aligned_cols=345 Identities=17% Similarity=0.138 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhH
Q 048624 78 DDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKY 151 (673)
Q Consensus 78 ~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~ 151 (673)
|+.+. ++.+.|+.+.+.||+++.+|++ ++.++..++|++++.|+++++.+.+|.. ....|..+|+++|+++|
T Consensus 18 d~~~~-~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~~~l~~~g~~~~~~~~ 95 (377)
T cd01163 18 DRQRG-LPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FVEALLLAGPEQFRKRW 95 (377)
T ss_pred hhcCC-CCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHhcCcHHHHHHH
Confidence 44344 4489999999999999999965 7899999999999999999988877764 45678889999999999
Q ss_pred HhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCC
Q 048624 152 YDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGY 231 (673)
Q Consensus 152 l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~ 231 (673)
++++.+|++++ .++|||++|+ ...+.|+++++ +++|+|| |+|.|||++. .|||++|+|++.. .
T Consensus 96 l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~a~-~Ad~~~v~a~~~~----~--- 158 (377)
T cd01163 96 FGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTGAL-FSDWVTVSALDEE----G--- 158 (377)
T ss_pred HHHHhCCCeEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecCCc-cceEEEEEEEcCC----C---
Confidence 99999999765 5999999886 66777778776 7899999 9999999999 9999999998631 2
Q ss_pred CCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHH
Q 048624 232 SDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA 311 (673)
Q Consensus 232 ~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~ 311 (673)
++.+|+||.+ .|||++.+.|+++|+++++++.|.||||+||.+++||..+ .++.
T Consensus 159 ---~~~~~lV~~~-------~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~----------------~g~~ 212 (377)
T cd01163 159 ---KLVFAAVPTD-------RPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPN----------------APDR 212 (377)
T ss_pred ---cEEEEEEeCC-------CCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCc----------------cccc
Confidence 5788999964 5999999999999999999999999999999999998532 2221
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 312 ATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQ-QFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKY 390 (673)
Q Consensus 312 ~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~-qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~ 390 (673)
....+...|+.+++.++|+++++++.+++|+++|+ +||++..+ +++++|.+|++|+++.+.+++++++.....+.+
T Consensus 213 -~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~~--~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~ 289 (377)
T cd01163 213 -GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAE--SARDDPYVQQVVGDLAARLHAAEALVLQAARAL 289 (377)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCcc--ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234567889999999999999999999999995 88875321 289999999999999999999776655544443
Q ss_pred HHHhccCC---cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHH
Q 048624 391 SEMKKTHD---EQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVA 467 (673)
Q Consensus 391 ~~~~~~~~---~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia 467 (673)
......+. .....+....++++|.++++.+.++++.|+|+|||.||+++++++|+|||++...++...+ .....++
T Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~ 368 (377)
T cd01163 290 DAAAAAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVG 368 (377)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhc
Confidence 32211110 0001234567889999999999999999999999999999999999999999998777764 4445555
Q ss_pred HHHH
Q 048624 468 GDLL 471 (673)
Q Consensus 468 ~~ll 471 (673)
.+++
T Consensus 369 ~~~~ 372 (377)
T cd01163 369 DYAL 372 (377)
T ss_pred hhhc
Confidence 5554
No 39
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.2e-43 Score=377.27 Aligned_cols=285 Identities=26% Similarity=0.386 Sum_probs=252.9
Q ss_pred hHHHHHhccCChhhHHhHHhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCc
Q 048624 134 LWGGSVINLGTKKHRDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGK 213 (673)
Q Consensus 134 l~~~~i~~~gt~eq~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~ 213 (673)
+++.+|..+|+++|+++|++++.+|+.++|+++|||++|||+..+.|+++++ ++||+|| |+|+|++++. .||
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~-~ad 114 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISNGG-DAD 114 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecCCc-cCC
Confidence 3456777889999999999999999999999999999999999999999998 7899999 9999999999 999
Q ss_pred EEEEEEEEecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcc
Q 048624 214 FATVFAKLMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDV 293 (673)
Q Consensus 214 ~~vV~Ar~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v 293 (673)
|++|+|++..++++ +.++.+|+||.+ .|||++.+.|.++|+++++++.+.|+||+||.+++|+.
T Consensus 115 ~~lv~a~~~~~~~~-----~~~~~~~lvp~~-------~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~---- 178 (327)
T cd00567 115 LFIVLARTDEEGPG-----HRGISAFLVPAD-------TPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGE---- 178 (327)
T ss_pred EEEEEEEeCCCCCC-----CCceEEEEEeCC-------CCCeEeccccccccCCCCceEEEEECCEEecHHHcCCC----
Confidence 99999998653311 127899999975 49999999999999999999999999999999999975
Q ss_pred cCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHH
Q 048624 294 SRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPML 373 (673)
Q Consensus 294 ~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~ 373 (673)
++.++......+...|+.+++.++|+++++++.+++|+++|+|||.| |.++|.+|++|+++.
T Consensus 179 ------------~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~------~~~~~~vq~~la~~~ 240 (327)
T cd00567 179 ------------EGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKP------LAEFQAVQFKLADMA 240 (327)
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc------cccchHHHHHHHHHH
Confidence 34456667788899999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhcccccccccc
Q 048624 374 ASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQ 453 (673)
Q Consensus 374 a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~ 453 (673)
+.+++++++. +.+++..+.+. ......++.+|.++++.+.++++.|+++|||+||+.+++++|+|||++...
T Consensus 241 ~~~~~~~~~~----~~a~~~~~~~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~ 312 (327)
T cd00567 241 AELEAARLLL----YRAAWLLDQGP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAAR 312 (327)
T ss_pred HHHHHHHHHH----HHHHHHHhCCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcce
Confidence 9999976554 33444444431 225577899999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHH
Q 048624 454 TFEGDNTVLLQQVAG 468 (673)
Q Consensus 454 ~~eG~~~vl~~~ia~ 468 (673)
+++|++++++.++++
T Consensus 313 ~~~G~~~~~~~~~~~ 327 (327)
T cd00567 313 IAEGTAEIQRLIIAR 327 (327)
T ss_pred eecCHHHHHHHHhcC
Confidence 999999999988763
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-40 Score=360.02 Aligned_cols=299 Identities=14% Similarity=0.133 Sum_probs=255.1
Q ss_pred HHHHHHHHHc-CCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcC
Q 048624 86 RQLLGLVREA-GIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNL 158 (673)
Q Consensus 86 ~~~~~~l~e~-Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g 158 (673)
.++.+.++++ ||+++.+|++ +..++..+.|++|+.+++.++.+..|..++...|..+|+++||++|||++.+|
T Consensus 53 ~~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasG 132 (520)
T PTZ00457 53 EQIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDG 132 (520)
T ss_pred HHHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 5566678899 9999999975 78999999999999887766655567666677888899999999999999999
Q ss_pred CcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCC-CCCCceE
Q 048624 159 DYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKG-YSDMGVH 237 (673)
Q Consensus 159 ~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~-~~~~g~~ 237 (673)
+.++++++|| +.|||+.++.|+|+++. +|+|+|| |+|.|+ +++ .||+++|+|++.....+..+ ..++|++
T Consensus 133 e~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~g~-~Ad~~lV~Art~~~~~~~~g~~~~~git 203 (520)
T PTZ00457 133 TIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-FAA-SATHFLVLAKTLTQTAAEEGATEVSRNS 203 (520)
T ss_pred CcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-cCc-hhcEEEEEeecCCcccccccccCcCceE
Confidence 9999999999 99999999999999863 4579999 999976 788 99999999998531100000 0123799
Q ss_pred EEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHHHHHhhH
Q 048624 238 AFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGEL 317 (673)
Q Consensus 238 ~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l 317 (673)
+|+||.+ .|||++++ +.|.|||| |.+++||. +++||+.++..+
T Consensus 204 ~FlV~~d-------apGVtv~~------------~eV~FddV--P~~~vLG~----------------~g~G~~~a~~~L 246 (520)
T PTZ00457 204 FFICAKD-------AKGVSVNG------------DSVVFENT--PAADVVGV----------------VGEGFKDAMITL 246 (520)
T ss_pred EEEEECC-------CCceEEec------------CEEEECCC--CHHHhCCC----------------CCchHHHHHHHH
Confidence 9999964 69999963 69999997 99999986 567899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048624 318 VGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTH 397 (673)
Q Consensus 318 ~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~ 397 (673)
+.+|+.+++.++|++++|++.+++|+. +|.+|++|++|.+.+++++ .+++.+++..|.+
T Consensus 247 ~~~Rl~~aA~~vGia~~ale~av~ya~-----------------~QaVq~~LAdma~~ieAar----sl~y~AA~~~D~g 305 (520)
T PTZ00457 247 FTEQYLYAASLLGIMKRVVQELRGSNA-----------------EEGATDTVASFACAMYAME----STLYALTANLDLP 305 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhCC
Confidence 999999999999999999999999985 3789999999999999954 5567777777775
Q ss_pred CcchhhhHHHHHHhHHHHHH---HHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHH
Q 048624 398 DEQLVGDVHALSAGLKSYVT---SYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLL 463 (673)
Q Consensus 398 ~~~~~~~~~~~~~~~K~~at---~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~ 463 (673)
. .+.+..++++|+|++ +.++.++++++| +++|++|++||++.++|+||+|++|+
T Consensus 306 ~----~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 306 T----EDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred C----cccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 3 567899999999999 888888888877 88999999999999999999999998
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=6.6e-40 Score=354.47 Aligned_cols=340 Identities=14% Similarity=0.068 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhH
Q 048624 78 DDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKY 151 (673)
Q Consensus 78 ~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~ 151 (673)
++... ++.++|+.+++.||+++.+|++ ++.+...+.|++++.|+++++.+..+ ++....+..+++++|++.|
T Consensus 18 d~~~~-~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (370)
T cd01159 18 ERARR-LPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIV-ATHSRMLAAFPPEAQEEVW 95 (370)
T ss_pred HHcCC-CCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHhCCHHHHHHHh
Confidence 43334 4478999999999999999975 88999999999999999988766554 3556677888999999888
Q ss_pred HhhhhcCCcceeeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEEecCCCCCCCC
Q 048624 152 YDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKLMLPTHDSKGY 231 (673)
Q Consensus 152 l~~i~~g~~~g~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~~~~g~~~~~~ 231 (673)
++.. .+.+.++ ..+.|+|+++ +|+|+|| |+|.|||++. .|||++|.|++..+++.
T Consensus 96 ~~~~-~~~~~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~~~-~ad~~~v~a~~~~~~~~---- 150 (370)
T cd01159 96 GDGP-DTLLAGS------------YAPGGRAERV--DGGYRVS-----GTWPFASGCD-HADWILVGAIVEDDDGG---- 150 (370)
T ss_pred CCCC-CceEEee------------ecCCceeEEe--CCeEEEe-----ccccCccCCC-cCceeEeeeECCCCCCC----
Confidence 7643 1111111 2456889987 8899999 9999999999 99999999998543222
Q ss_pred CCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCCCceeEEecceecCcccccccCCcccCCCccccCCcccchHHH
Q 048624 232 SDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA 311 (673)
Q Consensus 232 ~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~ 311 (673)
.++.+|+||. .||++.+.|+++|+++++++.|.|+||+||.+++|+...... | ...++.
T Consensus 151 --~~~~~~lV~~---------~Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~--~--------~~~g~~ 209 (370)
T cd01159 151 --PLPRAFVVPR---------AEYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMA--G--------DGPGGS 209 (370)
T ss_pred --CcceEEEEEh---------HHCEEecccccccccccCCCcEEEcceEcCccceeccccccc--C--------CCCCCC
Confidence 2799999993 379999999999999999999999999999999997421100 0 011100
Q ss_pred ---HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 312 ---ATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQF---GPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATAN 385 (673)
Q Consensus 312 ---~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qf---g~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~ 385 (673)
.........|+.+++.++|+++++++.+++|+++|.|| |+| |+++|.+|++|++|.+.+++++.+...
T Consensus 210 ~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~------i~~~~~v~~~la~~~~~l~~a~~~~~~ 283 (370)
T cd01159 210 TPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVK------MAEAPITQLRLAEAAAELDAARAFLER 283 (370)
T ss_pred CccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccc------cccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234566789999999999999999999999999998 455 999999999999999999996655544
Q ss_pred HHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccH-HHHHH
Q 048624 386 LVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDN-TVLLQ 464 (673)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~-~vl~~ 464 (673)
..+.+......+.. ...+....++.+|.++++.+.++++.++++|||+||.++++++|+|||++...+++|++ ++++.
T Consensus 284 aa~~~~~~~~~~~~-~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~ 362 (370)
T cd01159 284 ATRDLWAHALAGGP-IDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAE 362 (370)
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHH
Confidence 44433322111110 11233457788999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHH
Q 048624 465 QVAGDLLK 472 (673)
Q Consensus 465 ~ia~~ll~ 472 (673)
.+++.+|+
T Consensus 363 ~~~~~~l~ 370 (370)
T cd01159 363 AYGRALLG 370 (370)
T ss_pred HHHHHhcC
Confidence 99998863
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=305.28 Aligned_cols=341 Identities=20% Similarity=0.262 Sum_probs=288.3
Q ss_pred HHHHHHHHHcCCCCccccCC--------CHHHHHHHHHHHhccchhhHHHHHHh--HhhHHHHHhccCChhhHHhHHhhh
Q 048624 86 RQLLGLVREAGIKPFKYVAE--------DPAQYFAIAEAVGSVDMSLGIKMGVQ--YSLWGGSVINLGTKKHRDKYYDGI 155 (673)
Q Consensus 86 ~~~~~~l~e~Gl~~~~~p~~--------~~~~~~~~~e~la~~~~s~~~~~~~h--~~l~~~~i~~~gt~eq~~~~l~~i 155 (673)
+++.+..+..|++.+++|.. +..++..+.|.+|+.-.+. -.+..+ .......|..||++||+.+||-++
T Consensus 30 ekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~AP-eVfNC~APDTGNMEvl~rYGseeQks~WL~PL 108 (392)
T KOG1469|consen 30 EKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAP-EVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPL 108 (392)
T ss_pred HHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccc-hhccCCCCCCCCeeehhhhCCHHHHhhHhHHH
Confidence 45555566789999999943 5678999999999864322 111111 112234688999999999999999
Q ss_pred hcCCcceeeeccCCC-CCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCcc-ccCcEEEEEEEEecCCCCCCCCCC
Q 048624 156 DNLDYPGCFAMTELH-HGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAA-VHGKFATVFAKLMLPTHDSKGYSD 233 (673)
Q Consensus 156 ~~g~~~g~~a~TE~~-~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~-~~A~~~vV~Ar~~~~g~~~~~~~~ 233 (673)
..|++..|||||||. +.||..++++..+++ ++.|||| |.|||+||+. .-|..++++.+++....+ +|
T Consensus 109 LeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~i~mGkt~~~~~~----rh 177 (392)
T KOG1469|consen 109 LEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIAIFMGKTDNTSAS----RH 177 (392)
T ss_pred hcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEEEEecccCCCccc----hh
Confidence 999999999999999 778999999999999 9999999 9999999998 357899999998754322 35
Q ss_pred CceEEEEEeecCCCCCCCCCCeEEecCCCCccCCCC--CceeEEecceecCcccccccCCcccCCCccccCCcccchHHH
Q 048624 234 MGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGV--DNGALRFCSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA 311 (673)
Q Consensus 234 ~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~--~~~~l~fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~g~~ 311 (673)
+.-++.+||++ +|||.|...-..+|+... +..+|.|+|||||..|||-. ++.||.
T Consensus 178 kQqSmiLVpM~-------TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLG----------------eGrGFE 234 (392)
T KOG1469|consen 178 KQQSMILVPMN-------TPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLG----------------EGRGFE 234 (392)
T ss_pred hcccEEEEecC-------CCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeec----------------CCCcce
Confidence 57789999986 799999988888887543 57899999999999998742 578999
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 312 ATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYS 391 (673)
Q Consensus 312 ~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~ 391 (673)
+....+..+|+..+.-.+|.+++|+++..+.+.+|..||++ +..+.++.+-||....+++-. +.++-.++
T Consensus 235 IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~------l~q~~s~~~diA~sRveiEqa----RLLvLkAA 304 (392)
T KOG1469|consen 235 IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKK------LVQHGSVAHDIAESRVEIEQA----RLLVLKAA 304 (392)
T ss_pred eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcch------hhhcchHHHHHHHHHhHhhhh----hhhhhhhh
Confidence 99999999999999999999999999999999999999999 999999999999999999884 55566666
Q ss_pred HHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHHHHHHH
Q 048624 392 EMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLL 471 (673)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~ia~~ll 471 (673)
...|.-. ........++.|..+-..+..+++.++|.|||.|.+.+.++.++|.-+++.++..|..++++..+++--+
T Consensus 305 h~mD~~G---~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~ 381 (392)
T KOG1469|consen 305 HSMDTLG---NKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLEL 381 (392)
T ss_pred hhhhhhc---chhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhH
Confidence 6666421 1556677899999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHH
Q 048624 472 KQY 474 (673)
Q Consensus 472 ~~~ 474 (673)
+.-
T Consensus 382 ~~~ 384 (392)
T KOG1469|consen 382 RDQ 384 (392)
T ss_pred HHH
Confidence 543
No 43
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=100.00 E-value=3.1e-37 Score=299.95 Aligned_cols=159 Identities=40% Similarity=0.695 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccHHHH
Q 048624 513 HLRDPKFQLDAFRYRTSRLLQSVAVRLRK-HSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVQ-NCPDPSSRAA 590 (673)
Q Consensus 513 ~l~~~~~~~~~~~~r~~~l~~~~~~~l~~-~~~~~~~~~a~n~~~~~~~~~a~A~~e~~~l~~f~~~i~-~~~~~~~~~v 590 (673)
||.||++++++|++|+++++..+++++++ .++|.+.+++||+++.+++++|+||+++++++.|.++|+ .+.++++++|
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~~~~~~~~~v 80 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSSCADPEVRQV 80 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG-SSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 57899999999999999999999999988 567889999999999999999999999999999999999 8889999999
Q ss_pred HHHHHHHHhhHhhhhccccccccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCCcccccCcccc-CchHHHHHHH
Q 048624 591 LKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDLPDYVTRAPIAR-QSDAYAYYTQ 669 (673)
Q Consensus 591 L~~L~~Lyal~~i~~~~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~pd~~l~s~i~~-dg~~Ye~~~~ 669 (673)
|++||.||+|+.|++++|||+++||||+++++.|++.+.++|.+|||+|++|||||+|||++|+||||+ |||+||+||+
T Consensus 81 L~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~av~LVDAF~~~D~~L~S~iG~~DG~vYe~l~~ 160 (187)
T PF01756_consen 81 LRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNAVALVDAFDFPDFFLNSPIGRYDGDVYEALFE 160 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGHHHHHHTT---HHHHT-STT-TT--HHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHcChhccccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hh
Q 048624 670 IV 671 (673)
Q Consensus 670 ~~ 671 (673)
++
T Consensus 161 ~a 162 (187)
T PF01756_consen 161 WA 162 (187)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.86 E-value=7.1e-21 Score=178.54 Aligned_cols=150 Identities=24% Similarity=0.296 Sum_probs=137.2
Q ss_pred chHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048624 307 NKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANL 386 (673)
Q Consensus 307 ~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l 386 (673)
|+||.++...+..+|+.+++.++|.++.+++.+++|++.|++||+| +.++|.++++|+++.+++++++++.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~------l~~~~~v~~~la~~~~~~~a~~~~~--- 71 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKP------LAEHPAVRRRLADMAARLEAMRALV--- 71 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEE------GGGSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc------ccchhhhHHHHHhhccchhhhhccc---
Confidence 4689999999999999999999999999999999999999999999 9999999999999999999976655
Q ss_pred HHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCccHHHHHHHH
Q 048624 387 VEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQV 466 (673)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~~~vl~~~i 466 (673)
+.+.+..+.+ ......++++|.++++.+.++++.|++++||.||..++++++++||++...+++|++++++.+|
T Consensus 72 -~~~~~~~~~~-----~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~i 145 (150)
T PF00441_consen 72 -YRAARRLDAG-----QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQI 145 (150)
T ss_dssp -HHHHHHHHTT-----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHH
T ss_pred -cccccccccc-----cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHH
Confidence 4444455554 2337788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 048624 467 AGDLL 471 (673)
Q Consensus 467 a~~ll 471 (673)
|+.+|
T Consensus 146 a~~~l 150 (150)
T PF00441_consen 146 ARRLL 150 (150)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99986
No 45
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=9.6e-20 Score=200.16 Aligned_cols=249 Identities=15% Similarity=0.107 Sum_probs=186.0
Q ss_pred hccCChhh--HHhHHhhhhcCCcceeeeccCCCCC-----CCcCC--ceeEEEEcCCCCEEEEecCCCCceeeeccCccc
Q 048624 140 INLGTKKH--RDKYYDGIDNLDYPGCFAMTELHHG-----SNVQG--LQTVATFDPIKDEFIINTPNDGAIKWWIGNAAV 210 (673)
Q Consensus 140 ~~~gt~eq--~~~~l~~i~~g~~~g~~a~TE~~~G-----sd~~~--~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~ 210 (673)
...+++-. ..+|+..+.+.++..+.++|.|..- +.... +-...+. ++++||||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve-~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVE-QTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEE-EcCCCEEEe-----CHHHhhhh-c-
Confidence 34444333 4579999999999999999988521 11111 2112222 237999999 99999999 7
Q ss_pred cCcEEEEEEEEecCCCCCCCCCCCc--eEEEEEeecCCCCCCCCCCeEEecCCCCccCCCC-----------CceeEEec
Q 048624 211 HGKFATVFAKLMLPTHDSKGYSDMG--VHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGV-----------DNGALRFC 277 (673)
Q Consensus 211 ~A~~~vV~Ar~~~~g~~~~~~~~~g--~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~~~-----------~~~~l~fd 277 (673)
.||+++|++++...+++. .+ ..+|+||.+ +|||++.....++|.++. ..+.|.||
T Consensus 191 ~ad~~~V~~~~~~~~~~~-----~~~ya~~F~VP~d-------tpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFD 258 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAE-----KDPYALAFAIPTN-------TPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFD 258 (477)
T ss_pred ccceEEEeccCCCCCccC-----CCCeEEEEEeeCC-------CCceEEEeCCccCCCCCcccCccccccCCCeEEEEeC
Confidence 999999999976532210 13 689999974 799999988888998876 67999999
Q ss_pred ceecCcccc--cccCCcccCCCccccCCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 048624 278 SVRIPRDNL--LNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKP 355 (673)
Q Consensus 278 ~v~VP~~~l--L~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 355 (673)
||+||.+++ +|.... .+.+|.... .++..+..++|.+..+++.++.|+.. .+||.+
T Consensus 259 dV~VPwe~VF~~g~~e~-------------a~~~f~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~g--- 316 (477)
T TIGR02309 259 DVLVPWERIFILGDVEL-------------CNNAYAATG-----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIG--- 316 (477)
T ss_pred ceeccHHHhhhcCCHHH-------------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhC---
Confidence 999999999 764100 144443332 23566888999999999999999999 999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccC
Q 048624 356 EVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHG 435 (673)
Q Consensus 356 e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~G 435 (673)
+.++|.+|++|++|.+.+++++++ ...+++..+.+...........++++|.++++...++. +|+|.+||.|
T Consensus 317 ---i~~~q~VQ~kLAEm~~~~Ea~ral----~~aAa~~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G 388 (477)
T TIGR02309 317 ---ADGFQHVQEKIAEIIVYLEAMKAF----WTRAEEEAKENAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASG 388 (477)
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCc
Confidence 999999999999999999996554 45555544442100001235678999999999999995 9999999999
Q ss_pred ccC
Q 048624 436 YAA 438 (673)
Q Consensus 436 y~~ 438 (673)
+..
T Consensus 389 ~~~ 391 (477)
T TIGR02309 389 LIT 391 (477)
T ss_pred EEe
Confidence 864
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.40 E-value=2.1e-12 Score=118.77 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--cCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 048624 322 VGLAYSSVGVLKIAATIAIRYSLLRQQ--FGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDE 399 (673)
Q Consensus 322 l~~aa~~~G~a~~al~~a~~ya~~R~q--fg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~ 399 (673)
+.+++.++|++++|++.+++|++.|.. .+.+ +.+.|.+|.+|+++.+.+++++.........+.+..+.++.
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~------~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~ 74 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAP------LADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEE 74 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSB------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 467899999999999999999998887 3334 99999999999999999999887777776666555555532
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccCccchhccccccccccccCcc
Q 048624 400 QLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGD 458 (673)
Q Consensus 400 ~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~r~~rd~~~~~~~eG~ 458 (673)
. ..+........|.++++.+.++++.+++.+||.|+...+|++|+|||+++...+...
T Consensus 75 ~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 75 L-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 2 355667788889999999999999999999999999999999999999998877543
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.40 E-value=4.3e-13 Score=101.31 Aligned_cols=51 Identities=33% Similarity=0.545 Sum_probs=46.5
Q ss_pred eeeccCCCCCCCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEEE
Q 048624 163 CFAMTELHHGSNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAKL 221 (673)
Q Consensus 163 ~~a~TE~~~Gsd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar~ 221 (673)
|+|+|||++|+|+..++|+|+++ +++|+|| |.|+||+++. .||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~~~-~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSNAP-DADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEETTT-TESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECCcC-ccCEEEEEEEE
Confidence 78999999999999999999999 8899999 9999999999 99999999997
No 48
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.15 E-value=2.9e-11 Score=107.56 Aligned_cols=106 Identities=21% Similarity=0.317 Sum_probs=87.6
Q ss_pred CCCHHHHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCCccccCC------CHHHHHHHHHHHhccch
Q 048624 50 RKAQGDTRE-SVEYFNSRPDLQTPVEILKDDHRELCWRQLLGLVREAGIKPFKYVAE------DPAQYFAIAEAVGSVDM 122 (673)
Q Consensus 50 ~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~Gl~~~~~p~~------~~~~~~~~~e~la~~~~ 122 (673)
|++++++++ +.+++.++ + . +.....++... +++++|+.+.+.||+++.+|++ ++.+.+.+++++++.|.
T Consensus 1 t~~~~~l~~~~~~~~~~~-~-~-~~~~~~d~~~~-~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~ 76 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEE-I-A-PHAAEWDEDGR-FPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADA 76 (113)
T ss_dssp SHHHHHHHHHHHHHHHHH-T-H-HHHHHHHHHTS-CHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHH-c-h-HHHHHHHHhCC-CCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcc
Confidence 467788888 77777665 2 2 23344444443 4588999999999999999954 78999999999999999
Q ss_pred hhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCC
Q 048624 123 SLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLD 159 (673)
Q Consensus 123 s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 159 (673)
++++.+++|.++++.+|..+|+++|+++|||++.+|+
T Consensus 77 ~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 77 SLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred cccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 9998889998888889999999999999999999986
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.56 E-value=9.6e-06 Score=86.66 Aligned_cols=239 Identities=18% Similarity=0.177 Sum_probs=145.9
Q ss_pred cCChhh--HHhHHhhhhcCCcceeeeccCCCCC-----CCcC--CceeEEEEcCCCCEEEEecCCCCceeeeccCccccC
Q 048624 142 LGTKKH--RDKYYDGIDNLDYPGCFAMTELHHG-----SNVQ--GLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHG 212 (673)
Q Consensus 142 ~gt~eq--~~~~l~~i~~g~~~g~~a~TE~~~G-----sd~~--~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A 212 (673)
+|++-. ..+|+..+.+-++..+-|+|.|-.- +-.. .+-...+.. .++|-|++ |.|..+|+++ .+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee-~~dGIVVr-----GAK~~aT~~a-~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEE-TEDGIVVR-----GAKALATGSA-LT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEE-ecCceEEE-----ChHHHhcccc-cc
Confidence 555543 4579999999999999999988522 2122 233333322 26899999 9999999999 99
Q ss_pred cEEEEE-EEEecC-CCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCC---CCccCCCC------------CceeEE
Q 048624 213 KFATVF-AKLMLP-THDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCG---HKVGLNGV------------DNGALR 275 (673)
Q Consensus 213 ~~~vV~-Ar~~~~-g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~---~~~G~~~~------------~~~~l~ 275 (673)
|..+|+ .+.-.. +++ =--+|.+|.+ +|||.+.-.. ..-|+.+. .-+.|.
T Consensus 198 dei~V~Pt~~~~~~d~d-------fAv~FaiP~d-------t~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailV 263 (493)
T COG2368 198 DEIFVLPTRSMQEDDKD-------FAVAFAIPMD-------TEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILV 263 (493)
T ss_pred ceEEEeeccccCCCCCc-------eEEEEEcccC-------CCceEEEecCcchhhcccCCCCCCCccccccccCceEEE
Confidence 999998 443322 222 2457999975 6998764221 11111111 224599
Q ss_pred ecceecCcccccccCCcccCCCccccCCcccc--hHHHHHHhhHhHHHHHHHHH-------HHHHHHHHHHHHHHHhhhc
Q 048624 276 FCSVRIPRDNLLNRFGDVSRDGKYTSSLPTIN--KRFAATLGELVGGRVGLAYS-------SVGVLKIAATIAIRYSLLR 346 (673)
Q Consensus 276 fd~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~--~g~~~~~~~l~~~rl~~aa~-------~~G~a~~al~~a~~ya~~R 346 (673)
||||+||-++++-- .+ .. ..+........+.|...+.. .+|++..++ ++.
T Consensus 264 fDdVfVPWERVf~y-~d-------------~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~----~~~--- 322 (493)
T COG2368 264 FDDVFVPWERVFIY-RD-------------LERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIA----ETN--- 322 (493)
T ss_pred ecccccchhheeee-cc-------------HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH----Hhh---
Confidence 99999999998742 11 11 11111111111222222221 223332222 221
Q ss_pred cccCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 048624 347 QQFGPPRKPEVSILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSV 426 (673)
Q Consensus 347 ~qfg~~~~~e~~i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~ 426 (673)
| +.+++.||.+|++|.+..+.+.++...+...+.... .| ........+...|.++...-.++.+.
T Consensus 323 ---G--------v~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~-~G---~~~Pn~~~~n~~r~~~~~~~~~~~~~ 387 (493)
T COG2368 323 ---G--------VEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNP-NG---AWLPNPAYANVGRVYAPKAYPRIKEI 387 (493)
T ss_pred ---C--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CC---ceecCHHHHhhHHHhcccchHHHHHH
Confidence 1 778999999999999999987766544433332221 12 12334567788999999999999999
Q ss_pred HHHHhCccCcc
Q 048624 427 CREACGGHGYA 437 (673)
Q Consensus 427 ~~q~~Gg~Gy~ 437 (673)
+.++.||.-.+
T Consensus 388 l~~i~gg~~i~ 398 (493)
T COG2368 388 LQDISGGGIIT 398 (493)
T ss_pred HHHHhcCceee
Confidence 99988775443
No 50
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.50 E-value=1.3e-05 Score=88.57 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=139.2
Q ss_pred hHHhHHhhhhcCCcceeeeccCCCCC-----CCcCCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEE-EEE
Q 048624 147 HRDKYYDGIDNLDYPGCFAMTELHHG-----SNVQGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATV-FAK 220 (673)
Q Consensus 147 q~~~~l~~i~~g~~~g~~a~TE~~~G-----sd~~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV-~Ar 220 (673)
-..+|+..+.+.++..+.++|.|..- +....+-...+. +.++|-||+ |.|...|+++ .+|..+| ..+
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~a~-~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATNSA-LTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcccc-hhcceeeccCc
Confidence 34679999999999999999988521 111122222222 226899999 9999999999 9999888 444
Q ss_pred Eec--CCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCc------c--CC-------CCCceeEEecceecCc
Q 048624 221 LML--PTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKV------G--LN-------GVDNGALRFCSVRIPR 283 (673)
Q Consensus 221 ~~~--~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~------G--~~-------~~~~~~l~fd~v~VP~ 283 (673)
... .++++ -..|.||.+ +|||++.-....- + .. +-.-+-+.||||+||-
T Consensus 210 ~~~~~~d~dy-------AvaFavP~d-------tpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPW 275 (519)
T TIGR02310 210 AQIIGDNDDF-------ALMFIAPMD-------AEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPW 275 (519)
T ss_pred ccccCCCCCe-------EEEEEeEcC-------CCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccch
Confidence 321 22222 357999975 7999886221110 0 11 1224678999999999
Q ss_pred ccccccCCcccCCCccccCCcccchHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccc
Q 048624 284 DNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGR-VGLAYSSVGVLKIAATIAIRYSLLRQQFGPPRKPEVSILDY 362 (673)
Q Consensus 284 ~~lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~l~~~r-l~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~e~~i~~~ 362 (673)
|+++-- +++..-..+. ...++......-...| +..+-..+|++..+.+. -| +..+
T Consensus 276 ErVF~~-gd~e~~~~~~-----~~~~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~----------~G--------~~~~ 331 (519)
T TIGR02310 276 ENVLIY-RDFERCRTWA-----QYGGFARLFPMQACTRLAVKLDFITGLLHKALQC----------TG--------VLEF 331 (519)
T ss_pred HHceec-CCHHHHHhHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hC--------cccc
Confidence 998842 2211000000 0011111111111112 22222334444333321 12 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCcc
Q 048624 363 QSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGH 434 (673)
Q Consensus 363 q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~ 434 (673)
+.||.+|+++.+..+.++++...+..... ....| ........+..+|.+..+.--++.+.+.+.+||-
T Consensus 332 ~hVqekl~Eli~~~E~~~a~~~Aa~~~~~-~~~~G---~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~agG 399 (519)
T TIGR02310 332 RGVQAQMGEVVAWRNLFWTLTDAMAGSAY-QWKNG---AQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTSG 399 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cCCCC---eEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccCC
Confidence 99999999999999997665433221111 11111 1123345667899999999999999888766653
No 51
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=98.43 E-value=5e-07 Score=81.87 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=70.7
Q ss_pred chHhhhhhcCCCH---HHHHHHHHHHhcCCCCCC---CccCCHHHHHHHHHHHHHHHH---HHcCCCCccccCCCHHHHH
Q 048624 41 LCAVIWLYERKAQ---GDTRESVEYFNSRPDLQT---PVEILKDDHRELCWRQLLGLV---REAGIKPFKYVAEDPAQYF 111 (673)
Q Consensus 41 ~~~~m~~~l~~e~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l---~e~Gl~~~~~p~~~~~~~~ 111 (673)
++++|...|.+.. +.++++.+.+.++|+|.. .+.+++++.+....++..+.. .+.++.. ..+..+..
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~----~~~~~~~~ 76 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDD----NQDPDDAF 76 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT---------SHHHHH
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCccc----ccCHHHHH
Confidence 4678888887755 344559999999999876 346889988887766655544 3444431 11333321
Q ss_pred HHHHHHhccchhhHHHHHHhHhhHHHHHhccCChhhHHhHHhhhhcCCcc
Q 048624 112 AIAEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYYDGIDNLDYP 161 (673)
Q Consensus 112 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~ 161 (673)
.+ ..+.....+.+.++++|++||.++|..+||+||+++|||++.+.++|
T Consensus 77 ~~-~~~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 77 MI-GLLMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HH---HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HH-HHHHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 11 01111222233456689999999999999999999999999998875
No 52
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.26 E-value=0.0015 Score=66.40 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=73.8
Q ss_pred hHHhHHhhhhcCCcceeeeccCCC--CCCCc----CCceeEEEEcCCCCEEEEecCCCCceeeeccCccccCcEEEEEEE
Q 048624 147 HRDKYYDGIDNLDYPGCFAMTELH--HGSNV----QGLQTVATFDPIKDEFIINTPNDGAIKWWIGNAAVHGKFATVFAK 220 (673)
Q Consensus 147 q~~~~l~~i~~g~~~g~~a~TE~~--~Gsd~----~~~~TtA~~d~~~~~~vLntP~~~G~K~~i~~~~~~A~~~vV~Ar 220 (673)
-..+|+..+.+.++..+.+++.|. .+... ..+-...+.. ..+|.+|+ |.|...|+++ .+|.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~a~-~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATGAP-YADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEETGC-CSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcCCc-ccccEEEeec
Confidence 345799999999999999999986 11111 1122333322 26899999 9999999999 9999999754
Q ss_pred EecCCCCCCCCCCCceEEEEEeecCCCCCCCCCCeEEecCCCCccCC--CC----------CceeEEecceecCccccc
Q 048624 221 LMLPTHDSKGYSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLN--GV----------DNGALRFCSVRIPRDNLL 287 (673)
Q Consensus 221 ~~~~g~~~~~~~~~g~~~FlV~~rd~~~~~~~pGv~v~~~~~~~G~~--~~----------~~~~l~fd~v~VP~~~lL 287 (673)
.....++. .=-.+|.||.+ +||+++.-.......+ .. .-+.|.||||+||-++++
T Consensus 197 ~~~~~~d~-----dyAv~FavP~~-------tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDE-----DYAVAFAVPMN-------TPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCG-----GG-EEEEEETT--------TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCC-----ceEEEEEccCC-------CCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 32111111 12468999975 7999875432221111 11 246799999999999875
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=85.37 E-value=20 Score=35.33 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=52.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCcc
Q 048624 359 ILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYA 437 (673)
Q Consensus 359 i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 437 (673)
+..++.||.+|+++....+.+++..... .............+.......+|.+..+.--++++.+++++||.=.+
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aa----e~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~ 118 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAA----EAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT 118 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHH----HHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHH----HhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 7789999999999999999976654222 11111111111223345678899999999999999999999987543
No 54
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=74.48 E-value=23 Score=40.05 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=51.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCccCccC
Q 048624 359 ILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGGHGYAA 438 (673)
Q Consensus 359 i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 438 (673)
|.+-|.+..||+++.+.+|||.++..+ +......+- +....+...+++||.+...++-..+-+++.. ++..
T Consensus 433 i~~~q~~l~rlad~a~~lyam~a~~sr----a~~~~~~~~----~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 433 VPYQQLLLNRLGEAASLLYAASAVASR----ASMCVSKGL----PSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 999999999999999999998765433 333333331 2222334689999999999998888888887 5543
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=59.58 E-value=99 Score=34.99 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhCc
Q 048624 359 ILDYQSQQHKLMPMLASTYAFHFATANLVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSVCREACGG 433 (673)
Q Consensus 359 i~~~q~vq~~La~~~a~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~K~~at~~a~~~~~~~~q~~Gg 433 (673)
|.+-|.+-+|||+.++.+|+|.+.. .++.+....+ .+....+...++++|++....+...|-.+-++
T Consensus 537 iv~~q~~l~rlA~~~~~iYam~a~i----sRASrS~~ig----l~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 537 IVEEQSVLQRLANVAINIYAMVAVI----SRASRSYSIG----LPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHhcC----CcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999976554 3333333333 14455677888999999999888888777777
No 56
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=37.27 E-value=40 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=28.2
Q ss_pred cCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCC
Q 048624 613 VDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDL 648 (673)
Q Consensus 613 ~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~ 648 (673)
.||+|.++.+-+|+.+-+||.++|.++..|-...+.
T Consensus 31 KGYMSVSEsdhLRdn~FeLc~e~r~~~~~l~~~l~~ 66 (127)
T PF10799_consen 31 KGYMSVSESDHLRDNLFELCREMRDKAPRLKLHLDP 66 (127)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhhHhhhhhcCH
Confidence 588888888888888888888888888777655443
No 57
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.58 E-value=1.2e+02 Score=24.29 Aligned_cols=31 Identities=6% Similarity=0.008 Sum_probs=22.7
Q ss_pred cccccccCcCChhhHHHHHHHHHHHHHHhhh
Q 048624 607 IGTYRNVDYVAPNKAKAIHKLTEYLSFQVRN 637 (673)
Q Consensus 607 ~~~~~~~~~ls~~~~~~l~~~~~~l~~~lrp 637 (673)
.|...+.|-++..+.....+.+...+..|+|
T Consensus 49 iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 49 IGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 4444457888888888888888888888877
No 58
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=30.31 E-value=57 Score=27.90 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=31.1
Q ss_pred ccCcCChhhHHHHHHHHHHHHHHhhhhHHHhhhcCCC
Q 048624 612 NVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAFDL 648 (673)
Q Consensus 612 ~~~~ls~~~~~~l~~~~~~l~~~lrp~a~~Lvdaf~~ 648 (673)
..||+|.++.+-+++.+-+|+.+++.++..|-.-.+-
T Consensus 30 AKGYMSVSEsdhLRdN~FeL~re~~~~s~~l~~h~d~ 66 (127)
T PRK12302 30 AKGYMSVSESDHLRDNFFELNRELHDKSLRLNLHLDQ 66 (127)
T ss_pred HcCccccchhhHHHHHHHHHHHHHHHhhHHHhccCCH
Confidence 3699999999999999999999999998877654443
Done!