Query 048625
Match_columns 140
No_of_seqs 107 out of 333
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 99.8 2.9E-20 6.2E-25 143.3 8.6 112 2-113 79-191 (191)
2 KOG4293 Predicted membrane pro 99.8 1.8E-20 3.9E-25 159.9 -3.3 128 1-129 257-385 (403)
3 smart00665 B561 Cytochrome b-5 99.6 1.3E-15 2.8E-20 110.9 4.4 82 2-83 44-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.4 7.3E-13 1.6E-17 96.5 5.2 84 2-85 45-132 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 99.3 4.3E-12 9.4E-17 92.3 5.0 82 2-83 46-131 (131)
6 cd08761 Cyt_b561_CYB561D2_like 99.1 6.8E-11 1.5E-15 90.8 4.8 84 2-85 68-157 (183)
7 cd08766 Cyt_b561_ACYB-1_like P 98.6 7.8E-08 1.7E-12 72.1 4.7 84 2-85 51-138 (144)
8 cd08764 Cyt_b561_CG1275_like N 98.5 3.4E-07 7.3E-12 72.8 7.0 84 2-85 68-157 (214)
9 cd08763 Cyt_b561_CYB561 Verteb 98.4 6.6E-07 1.4E-11 67.0 4.9 83 2-84 51-137 (143)
10 PLN02680 carbon-monoxide oxyge 98.3 1.3E-06 2.8E-11 70.2 5.1 84 2-85 90-177 (232)
11 cd08765 Cyt_b561_CYBRD1 Verteb 98.2 1.7E-06 3.7E-11 65.6 4.7 83 2-84 58-144 (153)
12 cd08762 Cyt_b561_CYBASC3 Verte 98.1 3.8E-06 8.3E-11 65.1 5.2 84 2-85 81-168 (179)
13 PLN02351 cytochromes b561 fami 98.1 2.2E-05 4.7E-10 63.5 8.0 83 2-85 94-180 (242)
14 PLN02810 carbon-monoxide oxyge 97.7 5.3E-05 1.1E-09 60.9 5.1 84 2-85 90-177 (231)
15 KOG1619 Cytochrome b [Energy p 97.7 0.00012 2.7E-09 59.0 6.8 85 2-86 99-187 (245)
16 PF10348 DUF2427: Domain of un 97.1 0.00061 1.3E-08 48.5 3.4 47 2-48 54-101 (105)
17 smart00665 B561 Cytochrome b-5 94.1 0.47 1E-05 34.1 8.1 29 58-86 31-59 (129)
18 cd08554 Cyt_b561 Eukaryotic cy 93.6 0.75 1.6E-05 33.0 8.4 30 57-86 32-61 (131)
19 TIGR00383 corA magnesium Mg(2+ 92.4 0.35 7.5E-06 39.5 5.7 51 69-123 266-316 (318)
20 PRK09546 zntB zinc transporter 91.7 0.56 1.2E-05 38.7 6.2 43 68-110 271-313 (324)
21 PF10067 DUF2306: Predicted me 91.0 1.3 2.7E-05 31.0 6.5 27 61-87 6-32 (103)
22 PF00033 Cytochrom_B_N: Cytoch 90.2 1.1 2.3E-05 33.2 6.0 61 25-85 47-127 (188)
23 PF13301 DUF4079: Protein of u 89.8 1 2.2E-05 34.8 5.7 63 26-94 81-147 (175)
24 PF03188 Cytochrom_B561: Eukar 88.3 4.8 0.0001 28.7 8.1 59 26-86 36-94 (137)
25 COG0598 CorA Mg2+ and Co2+ tra 88.2 1.2 2.6E-05 37.0 5.4 45 66-110 267-311 (322)
26 PF10951 DUF2776: Protein of u 87.5 1.6 3.5E-05 36.8 5.7 76 4-79 163-244 (347)
27 cd08762 Cyt_b561_CYBASC3 Verte 87.1 10 0.00022 29.5 9.7 64 24-87 34-97 (179)
28 PF05393 Hum_adeno_E3A: Human 86.5 0.78 1.7E-05 31.9 2.8 27 113-139 48-87 (94)
29 cd08764 Cyt_b561_CG1275_like N 85.3 6.8 0.00015 31.2 8.1 59 24-84 23-81 (214)
30 PRK11085 magnesium/nickel/coba 85.3 2.3 4.9E-05 35.7 5.6 43 68-110 263-305 (316)
31 PF11044 TMEMspv1-c74-12: Plec 85.0 2.9 6.2E-05 25.6 4.4 27 92-118 3-30 (49)
32 cd08761 Cyt_b561_CYB561D2_like 84.4 15 0.00033 27.8 9.4 58 25-84 21-81 (183)
33 PF13301 DUF4079: Protein of u 83.6 5.7 0.00012 30.7 6.8 60 23-86 112-172 (175)
34 COG5658 Predicted integral mem 82.6 5.7 0.00012 31.6 6.5 32 55-86 40-71 (204)
35 cd08760 Cyt_b561_FRRS1_like Eu 82.5 17 0.00037 27.6 9.0 60 25-87 69-128 (191)
36 cd08766 Cyt_b561_ACYB-1_like P 82.0 18 0.00039 27.0 8.8 58 24-84 7-64 (144)
37 PLN02680 carbon-monoxide oxyge 81.0 14 0.00031 29.9 8.4 59 24-85 46-104 (232)
38 cd08765 Cyt_b561_CYBRD1 Verteb 79.5 23 0.0005 26.8 8.6 60 24-84 11-71 (153)
39 PF01544 CorA: CorA-like Mg2+ 78.9 2.5 5.5E-05 33.3 3.5 35 66-100 239-273 (292)
40 PF13172 PepSY_TM_1: PepSY-ass 78.4 1.4 3E-05 24.8 1.3 30 57-86 2-31 (34)
41 PF13630 SdpI: SdpI/YhfL prote 77.7 1.7 3.7E-05 28.0 1.8 32 55-86 18-49 (76)
42 COG1294 AppB Cytochrome bd-typ 76.9 19 0.0004 30.8 8.3 87 35-121 95-191 (346)
43 KOG1619 Cytochrome b [Energy p 75.9 16 0.00034 29.9 7.2 58 24-83 88-145 (245)
44 cd08763 Cyt_b561_CYB561 Verteb 75.8 30 0.00066 25.7 8.8 58 25-84 7-64 (143)
45 PF02322 Cyto_ox_2: Cytochrome 75.8 17 0.00038 30.4 7.8 48 39-86 92-143 (328)
46 PLN02810 carbon-monoxide oxyge 72.3 39 0.00085 27.4 8.6 23 61-83 114-136 (231)
47 PF13703 PepSY_TM_2: PepSY-ass 71.3 4.3 9.3E-05 27.3 2.6 36 50-86 51-86 (88)
48 COG2717 Predicted membrane pro 68.9 12 0.00025 29.9 4.9 43 58-105 144-186 (209)
49 PF13706 PepSY_TM_3: PepSY-ass 68.5 4.2 9.1E-05 23.3 1.8 28 57-84 1-28 (37)
50 PF08507 COPI_assoc: COPI asso 66.7 29 0.00064 25.1 6.4 52 56-114 57-108 (136)
51 PF06697 DUF1191: Protein of u 65.7 5 0.00011 33.3 2.3 41 92-132 212-252 (278)
52 PF15330 SIT: SHP2-interacting 65.7 11 0.00024 26.9 3.8 33 96-128 2-34 (107)
53 PF01794 Ferric_reduct: Ferric 65.3 7.6 0.00017 26.6 2.9 20 61-80 34-53 (125)
54 PF06609 TRI12: Fungal trichot 64.8 41 0.00089 30.8 8.2 49 65-113 240-292 (599)
55 PF14007 YtpI: YtpI-like prote 64.7 17 0.00038 25.1 4.5 48 26-86 34-81 (89)
56 PF01102 Glycophorin_A: Glycop 63.5 13 0.00028 27.2 3.9 6 94-99 65-70 (122)
57 PF10856 DUF2678: Protein of u 61.3 28 0.00061 25.4 5.3 72 26-103 29-103 (118)
58 KOG2082 K+/Cl- cotransporter K 59.8 41 0.0009 32.2 7.3 29 52-80 595-623 (1075)
59 COG3125 CyoD Heme/copper-type 58.5 33 0.00071 24.8 5.2 48 27-77 45-95 (111)
60 PF09656 PGPGW: Putative trans 58.4 41 0.00088 21.1 5.0 22 73-94 6-27 (53)
61 PF13789 DUF4181: Domain of un 58.3 42 0.00091 23.6 5.7 29 58-86 25-53 (110)
62 PRK15028 cytochrome bd-II oxid 57.7 59 0.0013 28.1 7.6 79 42-120 100-191 (378)
63 COG4736 CcoQ Cbb3-type cytochr 57.3 14 0.0003 23.8 2.8 28 28-55 10-37 (60)
64 PTZ00046 rifin; Provisional 56.8 13 0.00029 31.9 3.4 8 117-124 338-345 (358)
65 TIGR01477 RIFIN variant surfac 56.8 14 0.00029 31.8 3.5 8 117-124 333-340 (353)
66 TIGR00910 2A0307_GadC glutamat 56.5 94 0.002 27.3 8.8 19 66-84 407-425 (507)
67 PF13677 MotB_plug: Membrane M 54.9 33 0.00071 21.5 4.2 28 90-117 14-41 (58)
68 PF02439 Adeno_E3_CR2: Adenovi 54.0 27 0.00058 20.5 3.4 11 115-125 24-34 (38)
69 PF04478 Mid2: Mid2 like cell 53.3 1.2 2.6E-05 33.9 -3.0 39 95-133 50-88 (154)
70 PLN02351 cytochromes b561 fami 52.9 81 0.0018 25.7 7.2 52 26-81 52-104 (242)
71 PF14358 DUF4405: Domain of un 52.8 36 0.00077 21.3 4.2 26 54-79 35-60 (64)
72 PF03929 PepSY_TM: PepSY-assoc 51.7 18 0.00039 19.5 2.3 24 60-83 1-24 (27)
73 PF02628 COX15-CtaA: Cytochrom 51.2 35 0.00075 27.8 5.0 53 26-86 69-121 (302)
74 PF10348 DUF2427: Domain of un 50.9 49 0.0011 23.2 5.1 51 26-86 19-69 (105)
75 TIGR00203 cydB cytochrome d ox 50.4 1.1E+02 0.0023 26.5 8.0 43 44-86 102-148 (378)
76 PF03729 DUF308: Short repeat 50.4 27 0.00058 21.5 3.4 21 27-47 24-44 (72)
77 KOG1608 Protein transporter of 49.9 1.5E+02 0.0033 25.3 8.5 37 51-87 244-280 (374)
78 COG3038 CybB Cytochrome B561 [ 49.6 1.2E+02 0.0026 23.5 10.0 47 6-52 23-74 (181)
79 PRK05419 putative sulfite oxid 48.7 95 0.0021 24.3 6.9 20 25-44 74-93 (205)
80 PF15102 TMEM154: TMEM154 prot 48.2 5.1 0.00011 30.2 -0.3 8 120-127 83-90 (146)
81 PHA02898 virion envelope prote 48.0 70 0.0015 22.3 5.3 58 66-124 16-76 (92)
82 PF01292 Ni_hydr_CYTB: Prokary 47.9 1.1E+02 0.0023 22.3 10.3 22 25-46 43-64 (182)
83 PF03729 DUF308: Short repeat 47.1 29 0.00062 21.4 3.1 42 75-117 3-44 (72)
84 PRK11513 cytochrome b561; Prov 46.5 49 0.0011 25.1 4.8 24 26-49 43-66 (176)
85 PF02009 Rifin_STEVOR: Rifin/s 46.3 38 0.00082 28.4 4.5 7 118-124 280-286 (299)
86 PRK15003 cytochrome d ubiquino 46.3 1.3E+02 0.0027 26.2 7.7 76 42-117 100-188 (379)
87 PRK10179 formate dehydrogenase 45.5 1.4E+02 0.003 23.4 7.4 28 59-86 108-135 (217)
88 PF15048 OSTbeta: Organic solu 45.3 31 0.00067 25.4 3.4 33 91-124 33-65 (125)
89 PF02060 ISK_Channel: Slow vol 44.2 49 0.0011 24.5 4.3 34 93-126 42-75 (129)
90 PHA03048 IMV membrane protein; 44.0 99 0.0021 21.6 5.5 11 114-124 65-75 (93)
91 PF10831 DUF2556: Protein of u 43.1 63 0.0014 20.0 3.9 34 99-134 10-43 (53)
92 PF05545 FixQ: Cbb3-type cytoc 43.0 51 0.0011 19.7 3.6 15 96-110 10-24 (49)
93 PF06011 TRP: Transient recept 41.6 2E+02 0.0044 24.7 8.4 27 46-76 342-368 (438)
94 PLN02292 ferric-chelate reduct 41.1 57 0.0012 30.5 5.2 64 60-123 205-274 (702)
95 KOG3637 Vitronectin receptor, 40.3 24 0.00053 34.3 2.8 34 91-124 977-1010(1030)
96 PLN02631 ferric-chelate reduct 40.2 57 0.0012 30.5 5.0 20 60-79 188-207 (699)
97 TIGR00930 2a30 K-Cl cotranspor 39.4 1.8E+02 0.0039 28.2 8.3 28 54-81 489-516 (953)
98 PF11862 DUF3382: Domain of un 38.9 1E+02 0.0023 21.2 5.2 74 4-77 15-100 (101)
99 PF14927 Neurensin: Neurensin 38.2 1.2E+02 0.0026 22.7 5.6 25 63-87 46-70 (140)
100 TIGR02901 QoxD cytochrome aa3 37.9 88 0.0019 21.7 4.6 37 33-71 39-78 (94)
101 PF04156 IncA: IncA protein; 37.6 86 0.0019 23.5 5.0 24 62-85 2-25 (191)
102 TIGR02611 conserved hypothetic 37.5 1.6E+02 0.0036 21.5 6.4 33 63-95 20-52 (121)
103 PHA00726 hypothetical protein 36.5 45 0.00098 23.1 2.9 38 44-83 22-59 (89)
104 TIGR00540 hemY_coli hemY prote 35.6 1.4E+02 0.0031 25.1 6.4 11 80-90 16-26 (409)
105 PLN02844 oxidoreductase/ferric 35.1 83 0.0018 29.5 5.3 21 60-80 191-211 (722)
106 PTZ00370 STEVOR; Provisional 32.8 74 0.0016 26.7 4.1 28 97-124 257-285 (296)
107 PRK11387 S-methylmethionine tr 32.8 2.7E+02 0.0059 23.9 7.8 20 57-76 403-422 (471)
108 PF04277 OAD_gamma: Oxaloaceta 32.1 75 0.0016 20.5 3.4 22 96-117 11-32 (79)
109 TIGR02115 potass_kdpF K+-trans 31.9 58 0.0013 17.5 2.3 22 31-52 2-23 (26)
110 PF08374 Protocadherin: Protoc 31.1 31 0.00067 27.8 1.6 17 94-110 38-54 (221)
111 PF15099 PIRT: Phosphoinositid 30.9 63 0.0014 23.9 3.1 29 57-85 43-73 (129)
112 TIGR02125 CytB-hydogenase Ni/F 30.8 2.3E+02 0.005 21.3 7.2 61 26-86 50-138 (211)
113 PRK14759 potassium-transportin 30.8 87 0.0019 17.3 2.9 23 30-52 6-28 (29)
114 TIGR03813 put_Glu_GABA_T putat 30.6 3.5E+02 0.0075 23.2 9.2 19 66-84 404-422 (474)
115 PF10953 DUF2754: Protein of u 30.1 29 0.00064 22.5 1.1 31 53-84 4-34 (70)
116 PRK10582 cytochrome o ubiquino 29.9 1.3E+02 0.0027 21.6 4.4 20 28-47 17-36 (109)
117 PF12271 Chs3p: Chitin synthas 29.6 2.7E+02 0.0059 23.3 7.0 37 52-88 109-145 (293)
118 PF14147 Spore_YhaL: Sporulati 29.6 1.4E+02 0.003 18.7 4.0 16 95-110 4-19 (52)
119 PF07856 Orai-1: Mediator of C 29.3 2.7E+02 0.0057 21.4 6.8 27 99-125 147-173 (175)
120 PF05745 CRPA: Chlamydia 15 kD 29.1 2.2E+02 0.0049 21.3 5.7 23 117-139 124-148 (150)
121 smart00831 Cation_ATPase_N Cat 28.9 35 0.00076 20.9 1.3 30 53-82 34-63 (64)
122 KOG2533 Permease of the major 28.7 1.5E+02 0.0031 26.4 5.5 25 75-99 414-438 (495)
123 PF07331 TctB: Tripartite tric 28.5 2.1E+02 0.0046 20.0 7.7 26 29-54 39-64 (141)
124 KOG2662 Magnesium transporters 28.1 1.9E+02 0.004 25.5 5.9 21 67-87 354-375 (414)
125 PRK05415 hypothetical protein; 28.0 1.7E+02 0.0037 25.0 5.6 18 65-82 68-85 (341)
126 PRK10747 putative protoheme IX 27.8 1.9E+02 0.0041 24.4 5.9 11 80-90 16-26 (398)
127 COG3247 HdeD Uncharacterized c 27.1 3E+02 0.0066 21.4 7.9 19 71-89 134-152 (185)
128 TIGR02847 CyoD cytochrome o ub 26.7 1.9E+02 0.004 20.2 4.8 33 34-68 38-73 (96)
129 PF05767 Pox_A14: Poxvirus vir 26.3 2.3E+02 0.005 19.8 6.1 9 114-122 66-74 (92)
130 TIGR01478 STEVOR variant surfa 26.0 91 0.002 26.2 3.5 28 97-124 261-289 (295)
131 TIGR00997 ispZ intracellular s 25.8 3.1E+02 0.0068 21.1 6.7 59 38-108 32-93 (178)
132 PF06422 PDR_CDR: CDR ABC tran 25.8 64 0.0014 22.4 2.3 23 95-117 54-76 (103)
133 COG1585 Membrane protein impli 25.7 1.7E+02 0.0037 21.6 4.7 11 65-75 28-38 (140)
134 PF15345 TMEM51: Transmembrane 25.7 77 0.0017 25.7 3.0 30 93-124 58-87 (233)
135 PF15050 SCIMP: SCIMP protein 25.5 1.5E+02 0.0032 21.9 4.2 13 125-137 53-65 (133)
136 PF12191 stn_TNFRSF12A: Tumour 25.3 24 0.00051 26.2 0.0 22 114-135 98-124 (129)
137 PF04971 Lysis_S: Lysis protei 24.5 2.2E+02 0.0047 18.8 4.6 15 116-130 53-67 (68)
138 PF01102 Glycophorin_A: Glycop 24.4 1.3E+02 0.0027 22.0 3.7 14 94-107 68-81 (122)
139 PRK07734 motB flagellar motor 24.1 1.4E+02 0.003 24.0 4.3 26 90-115 16-41 (259)
140 COG3182 PiuB Uncharacterized i 24.0 38 0.00083 29.8 1.1 34 53-86 2-35 (442)
141 PF07332 DUF1469: Protein of u 23.4 2.6E+02 0.0056 19.3 6.6 16 96-111 74-89 (121)
142 COG3071 HemY Uncharacterized e 23.3 2.8E+02 0.0061 24.3 6.1 19 72-90 8-26 (400)
143 TIGR00892 2A0113 monocarboxyla 23.1 1.4E+02 0.0031 25.3 4.3 31 103-133 411-441 (455)
144 TIGR02762 TraL_TIGR type IV co 23.0 69 0.0015 22.0 2.0 42 5-58 25-66 (95)
145 PF09604 Potass_KdpF: F subuni 22.8 1.4E+02 0.0029 15.9 2.9 22 31-52 3-24 (25)
146 PF08229 SHR3_chaperone: ER me 22.7 3.9E+02 0.0084 21.1 10.0 112 1-117 9-156 (196)
147 PF01925 TauE: Sulfite exporte 22.6 1.9E+02 0.0042 22.0 4.7 35 6-42 73-107 (240)
148 PF12811 BaxI_1: Bax inhibitor 22.5 2.4E+02 0.0052 23.4 5.4 22 96-117 247-268 (274)
149 cd01324 cbb3_Oxidase_CcoQ Cyto 22.2 1.3E+02 0.0028 18.2 2.9 29 26-54 9-37 (48)
150 KOG0204 Calcium transporting A 21.6 13 0.00028 35.7 -2.5 46 56-102 146-191 (1034)
151 PF01027 Bax1-I: Inhibitor of 21.6 2.9E+02 0.0062 20.5 5.4 39 69-114 132-170 (205)
152 TIGR00908 2A0305 ethanolamine 21.5 5E+02 0.011 21.9 7.5 12 65-76 387-398 (442)
153 PF02285 COX8: Cytochrome oxid 21.1 45 0.00098 20.2 0.7 25 26-50 12-36 (44)
154 PF09323 DUF1980: Domain of un 20.9 2.4E+02 0.0051 21.3 4.8 54 69-123 3-60 (182)
155 PF07937 DUF1686: Protein of u 20.1 2.2E+02 0.0048 22.4 4.4 14 71-84 95-108 (185)
156 PF11694 DUF3290: Protein of u 20.1 2.2E+02 0.0047 21.3 4.3 15 45-59 35-49 (149)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=2.9e-20 Score=143.33 Aligned_cols=112 Identities=34% Similarity=0.567 Sum_probs=97.5
Q ss_pred eehhhHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQ 81 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~l 81 (140)
+++++++|+++++...++......+.|+++|+++++++++||+.+++||.+.++.|.+|++.|+++||++.++|++|+++
T Consensus 79 ~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~ 158 (191)
T cd08760 79 AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL 158 (191)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999751212224689999999999999999999999999999899999999999999999999999999
Q ss_pred hcccccccc-CCcchhHHHHHHHHHHHHHHHHH
Q 048625 82 GFEVMGEGR-SYAKLAYCLCLSTLIGVCIALEV 113 (140)
Q Consensus 82 Gl~l~~~~~-~~w~i~y~~~~~~~~~~~i~lEv 113 (140)
|+++..++. +.|.++|++++++++++++++|.
T Consensus 159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (191)
T cd08760 159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191 (191)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 999995541 46888999999999999998873
No 2
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-20 Score=159.85 Aligned_cols=128 Identities=38% Similarity=0.678 Sum_probs=114.6
Q ss_pred CeehhhHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHH
Q 048625 1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVF 80 (140)
Q Consensus 1 ~g~~l~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~ 80 (140)
++++++++|+..|.++.+++.+.....|+.+|+..++++++|+++.++||.|++|.|++|||+||..||.+.++|++|++
T Consensus 257 ~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~ 336 (403)
T KOG4293|consen 257 TGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIF 336 (403)
T ss_pred eEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHh
Confidence 35788899999999998887777789999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHhh
Q 048625 81 QGFEVMGEGRSYAK-LAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLR 129 (140)
Q Consensus 81 lGl~l~~~~~~~w~-i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~~ 129 (140)
.|+++. .|+..|. ++|+.+.+....+.+++|+.+|....++.+.+++.
T Consensus 337 ~~~~l~-~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 385 (403)
T KOG4293|consen 337 DGLELL-YPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPSSMS 385 (403)
T ss_pred hhHhhh-cCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCccccc
Confidence 999999 6666687 79999999999999999999987766666644443
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.58 E-value=1.3e-15 Score=110.86 Aligned_cols=82 Identities=38% Similarity=0.648 Sum_probs=71.9
Q ss_pred eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhhhccCCC---CCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFRPKTT---NKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~---~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+++++...+++. ....+.|+++|++++++..+|++.+++||.++ ++.|..|+++|+++||++.++|++
T Consensus 44 a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~ 123 (129)
T smart00665 44 ALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIV 123 (129)
T ss_pred HHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999998866532 22358999999999999999999888888876 778999999999999999999999
Q ss_pred HHHHhc
Q 048625 78 NVFQGF 83 (140)
Q Consensus 78 ni~lGl 83 (140)
|+++|+
T Consensus 124 ~~~lG~ 129 (129)
T smart00665 124 TIFLGL 129 (129)
T ss_pred HHHccC
Confidence 999986
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.37 E-value=7.3e-13 Score=96.45 Aligned_cols=84 Identities=29% Similarity=0.505 Sum_probs=69.0
Q ss_pred eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhhhc---cCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFR---PKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~~r---p~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
|+++.++|+.+.+...++.+ ....+.|.++|++++++.++|++.++++ |+++.+.|+.|++.|+++|+++.++|++
T Consensus 45 ~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~ 124 (137)
T PF03188_consen 45 ALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIA 124 (137)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999888665422 1225899999999999999999865543 5566778899999999999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
|+++|++.
T Consensus 125 ~i~~G~~~ 132 (137)
T PF03188_consen 125 TIFLGLTE 132 (137)
T ss_pred HHHHHHHH
Confidence 99999953
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.28 E-value=4.3e-12 Score=92.30 Aligned_cols=82 Identities=29% Similarity=0.417 Sum_probs=66.6
Q ss_pred eehhhHHHhhhHhhcccCCCC-cccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~-~~~~~H~~iGi~v~~l~~lQ~l~~~~---rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+++++...++.+. -..+.|.++|++++++.++|++.++. .|++..++|..++++|++.|+++.+++++
T Consensus 46 ~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~ 125 (131)
T cd08554 46 AFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIA 125 (131)
T ss_pred HHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999987643221 12589999999999999999976553 45555556999999999999999999999
Q ss_pred HHHHhc
Q 048625 78 NVFQGF 83 (140)
Q Consensus 78 ni~lGl 83 (140)
|+++|.
T Consensus 126 t~~~G~ 131 (131)
T cd08554 126 TILLGI 131 (131)
T ss_pred HHHhcC
Confidence 999984
No 6
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.12 E-value=6.8e-11 Score=90.81 Aligned_cols=84 Identities=25% Similarity=0.316 Sum_probs=65.6
Q ss_pred eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhh---hccCCC--CCcceeeeehhhhHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALL---FRPKTT--NKFRKYWKSYHHFVGYACVVLG 75 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~--~~~R~~w~~~H~~~Gr~~iiLg 75 (140)
+.+++++|+...+...++.+ ....+.|.++|++++++.++|++.++ ++|.+. .++|+.++++|++.|+++.++|
T Consensus 68 a~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~ 147 (183)
T cd08761 68 ALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLG 147 (183)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45677888877776544321 11258999999999999999997544 344333 2578889999999999999999
Q ss_pred HHHHHHhccc
Q 048625 76 VVNVFQGFEV 85 (140)
Q Consensus 76 ivni~lGl~l 85 (140)
++|+.+|++.
T Consensus 148 ~~t~~lGl~~ 157 (183)
T cd08761 148 LATLVLGLET 157 (183)
T ss_pred HHHHHHhcCc
Confidence 9999999987
No 7
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.57 E-value=7.8e-08 Score=72.12 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=62.9
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-+...++.+.. ..+.|.++|++++++..+|.+.+ ++.|....+.|.---.+|++.|+++.+++++
T Consensus 51 a~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~ 130 (144)
T cd08766 51 ALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIA 130 (144)
T ss_pred HHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788887777665443211 24889999999999999998643 3578754334544455899999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
++.+|+.-
T Consensus 131 t~~lGl~e 138 (144)
T cd08766 131 TAETGLLE 138 (144)
T ss_pred HHHHHHHH
Confidence 99999853
No 8
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.51 E-value=3.4e-07 Score=72.76 Aligned_cols=84 Identities=30% Similarity=0.456 Sum_probs=60.8
Q ss_pred eehhhHHHhhhHhhcccCC-CCc--ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLS-PGV--VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLG 75 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s-~~~--~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLg 75 (140)
|++++++|+...+...++. ++. .++.|.++|++++++..+|.+.++ +.|.-....|...-.+|+..|+.+.+++
T Consensus 68 Al~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLa 147 (214)
T cd08764 68 AFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLA 147 (214)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHH
Confidence 5677788877766654443 112 248899999999999999986433 5675433334333447999999999999
Q ss_pred HHHHHHhccc
Q 048625 76 VVNVFQGFEV 85 (140)
Q Consensus 76 ivni~lGl~l 85 (140)
++++.+|+.-
T Consensus 148 iaT~~lGl~e 157 (214)
T cd08764 148 VATALLGITE 157 (214)
T ss_pred HHHHHHHHHH
Confidence 9999999954
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.35 E-value=6.6e-07 Score=67.04 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=63.2
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-+.--++.+.. .++.|.++|++++++..+|-+.+ ++-|....+.|..+-.+|++.|+++.+++++
T Consensus 51 a~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~ 130 (143)
T cd08763 51 ALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVG 130 (143)
T ss_pred HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566777776666544432211 25899999999999999997533 2567655566888888899999999999999
Q ss_pred HHHHhcc
Q 048625 78 NVFQGFE 84 (140)
Q Consensus 78 ni~lGl~ 84 (140)
+..+|+.
T Consensus 131 t~~lG~~ 137 (143)
T cd08763 131 TSLLGLT 137 (143)
T ss_pred HHHHHHH
Confidence 9999984
No 10
>PLN02680 carbon-monoxide oxygenase
Probab=98.27 E-value=1.3e-06 Score=70.17 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=62.7
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-++..++++.. .++.|.++|++++++..+|.+.+ ++-|......|...--+|.+.|+.+.+++++
T Consensus 90 A~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~Laia 169 (232)
T PLN02680 90 AFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVA 169 (232)
T ss_pred HHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888877766653322 24899999999999999997533 2567543334443346899999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
+..+|+.-
T Consensus 170 T~~lG~~E 177 (232)
T PLN02680 170 TATTGILE 177 (232)
T ss_pred HHHHHHHH
Confidence 99999853
No 11
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=98.23 E-value=1.7e-06 Score=65.58 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=61.5
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-+..-++.+.. .++.|.++|++++++..+|-+.++ +-|......|.-.-.+|.+.|+...+++++
T Consensus 58 a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~ 137 (153)
T cd08765 58 AFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIA 137 (153)
T ss_pred HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666654443221 258999999999999999975332 456544445666667899999999999999
Q ss_pred HHHHhcc
Q 048625 78 NVFQGFE 84 (140)
Q Consensus 78 ni~lGl~ 84 (140)
+..+|+.
T Consensus 138 t~~lG~~ 144 (153)
T cd08765 138 TALMGIT 144 (153)
T ss_pred HHHHHHH
Confidence 9999985
No 12
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.14 E-value=3.8e-06 Score=65.14 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=64.1
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+...+...++++-- .++.|..+|++++++..+|-+.++ +-|......|.-.-.+|...|+...+++++
T Consensus 81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia 160 (179)
T cd08762 81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA 160 (179)
T ss_pred HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 5678888888888876664321 137899999999999999975332 445433345666688999999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
+..+|+.-
T Consensus 161 t~~lGl~e 168 (179)
T cd08762 161 SCISGINE 168 (179)
T ss_pred HHHHHHHH
Confidence 99999853
No 13
>PLN02351 cytochromes b561 family protein
Probab=98.05 E-value=2.2e-05 Score=63.49 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=59.3
Q ss_pred eehhhHHHhhhHhhcccC-CCCcccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDL-SPGVVYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~-s~~~~~~~H~~iGi~v~~l~~lQ~l-~~~--~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-+...++ .+. .++.|.++|++++++..+|-+ ++. +-|......|.-.-.+|..+|+...+++++
T Consensus 94 Ali~~vvGl~a~fh~~~~~i~n-lySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~Laia 172 (242)
T PLN02351 94 ALASGVFGIWTKFHGQDGIVAN-FYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVA 172 (242)
T ss_pred HHHHHHHHHHHHHhcccCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHH
Confidence 566777777774332221 121 258999999999999999965 332 445544445555556899999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
+..+|+.-
T Consensus 173 Ta~lGl~E 180 (242)
T PLN02351 173 TAETGLLE 180 (242)
T ss_pred HHHHHHHH
Confidence 99999854
No 14
>PLN02810 carbon-monoxide oxygenase
Probab=97.73 E-value=5.3e-05 Score=60.88 Aligned_cols=84 Identities=26% Similarity=0.368 Sum_probs=65.1
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l-~~--~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
+++++++|+..-+.-.++++-- .++.|..+|++++++..+|-+ ++ ++-|......|...-.+|..+|....+++++
T Consensus 90 Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAia 169 (231)
T PLN02810 90 ALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVG 169 (231)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 5677888888877766654321 259999999999999999975 43 2567655555665568899999999999999
Q ss_pred HHHHhccc
Q 048625 78 NVFQGFEV 85 (140)
Q Consensus 78 ni~lGl~l 85 (140)
+..+|+.-
T Consensus 170 ta~lGi~E 177 (231)
T PLN02810 170 NAALGFLE 177 (231)
T ss_pred HHHHHHHH
Confidence 99999854
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=97.70 E-value=0.00012 Score=59.01 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=64.2
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l-~~~--~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
++++++.|+..-|...+...-- .++.|.++|+.++.+-.+|-+ +++ +-|--..+.|.-.=..|..+|....+++++
T Consensus 99 Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ 178 (245)
T KOG1619|consen 99 ALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIV 178 (245)
T ss_pred HHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHH
Confidence 4566777777777766553311 248999999999999999964 433 455554566766677899999999999999
Q ss_pred HHHHhcccc
Q 048625 78 NVFQGFEVM 86 (140)
Q Consensus 78 ni~lGl~l~ 86 (140)
+.-+|+...
T Consensus 179 ta~~Gl~ek 187 (245)
T KOG1619|consen 179 TALTGLLEK 187 (245)
T ss_pred HHHHHHHHH
Confidence 999999544
No 16
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=97.07 E-value=0.00061 Score=48.49 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=38.5
Q ss_pred eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhhh
Q 048625 2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALLF 48 (140)
Q Consensus 2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~~ 48 (140)
++++.++|+.+|....++.+++ ..++|.++|.+++++++.|++.+++
T Consensus 54 ~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 54 FLVLMILGLFLGSVYNGSTPDLYPNNAHGKMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999887776544 5799999999999999999875543
No 17
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=94.15 E-value=0.47 Score=34.06 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=14.8
Q ss_pred eeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 58 KYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 58 ~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
+.|...|+...-++.+++++.+..++...
T Consensus 31 ~~~~~~H~~lq~~a~~~~~~g~~~~~~~~ 59 (129)
T smart00665 31 PTWFLLHVVLQILALVLGVIGLLAIFISH 59 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555555555544443
No 18
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=93.63 E-value=0.75 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=17.3
Q ss_pred ceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 57 RKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 57 R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
|+.|.+.|+.+.-.+.+++++-...++...
T Consensus 32 ~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~ 61 (131)
T cd08554 32 KRALKLLHAILHLLAFVLGLVGLLAVFLFH 61 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666666665555555444
No 19
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=92.42 E-value=0.35 Score=39.51 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625 69 YACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS 123 (140)
Q Consensus 69 r~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~ 123 (140)
-+.+.+.+++++.||+..+-|...|..+|..++++++++.++ .++.++||+
T Consensus 266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~----~~~~fkrk~ 316 (318)
T TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG----PLIYFRRKG 316 (318)
T ss_pred HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH----HHHHHHHcC
Confidence 345567788889999987667667888888877777776655 333455554
No 20
>PRK09546 zntB zinc transporter; Reviewed
Probab=91.65 E-value=0.56 Score=38.75 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625 68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~ 110 (140)
.-+.+.+.+++++.||+..+-|...|..+|.+++++++++.++
T Consensus 271 t~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~ 313 (324)
T PRK09546 271 AMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 3455667889999999987667667888887777776666554
No 21
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=90.96 E-value=1.3 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred eehhhhHHHHHHHHHHHHHHHhccccc
Q 048625 61 KSYHHFVGYACVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 61 ~~~H~~~Gr~~iiLgivni~lGl~l~~ 87 (140)
...|++.||+-+....+....|+-+..
T Consensus 6 ~~~HR~lGrvyv~~~~~~a~sa~~i~~ 32 (103)
T PF10067_consen 6 PRLHRWLGRVYVAAMLISALSALFIAF 32 (103)
T ss_pred ccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456999999999998888888888774
No 22
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=90.23 E-value=1.1 Score=33.16 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=43.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhc--------------------cCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 25 YGLHRKLGFTAFCLGALQTLALLFR--------------------PKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l~~~~r--------------------p~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
...|..+|++.+++..+..+..+.+ +.++.+.+.-+|...++.-.+...+.++-+.+|+-
T Consensus 47 ~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~ 126 (188)
T PF00033_consen 47 RWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLI 126 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998876666 22222334455777788888888888888888888
Q ss_pred c
Q 048625 85 V 85 (140)
Q Consensus 85 l 85 (140)
+
T Consensus 127 ~ 127 (188)
T PF00033_consen 127 M 127 (188)
T ss_dssp C
T ss_pred H
Confidence 8
No 23
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=89.81 E-value=1 Score=34.83 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=44.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhh----hccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcc
Q 048625 26 GLHRKLGFTAFCLGALQTLALL----FRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAK 94 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~----~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~ 94 (140)
..|..+|.++++++.+-.++.. .+.++ +|.-.|.|.|-.+..|-.++..+.-++..++++.|+
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~------lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R 147 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGK------LFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWAR 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcCCC------CccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHH
Confidence 5788888888888777766443 22222 556668888888888888888888888754433454
No 24
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=88.31 E-value=4.8 Score=28.66 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
..|..+-.+.+++.++=....+.. ++.+..+-++-.|.++|-+++++.+.+...|+-..
T Consensus 36 ~~H~~lq~l~~~~~~~G~~~~~~~--~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 36 RIHWILQVLALVFAIIGFVAIFIN--KNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRF 94 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 566666655555544443322211 11112234455677777777777777766666554
No 25
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=88.20 E-value=1.2 Score=36.96 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625 66 FVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 66 ~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~ 110 (140)
.+.-+.+..-+++++.||+..+-|...|..+|-+++++++++.++
T Consensus 267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~ 311 (322)
T COG0598 267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALL 311 (322)
T ss_pred HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHH
Confidence 345666777888999999999767667888888877777777655
No 26
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=87.49 E-value=1.6 Score=36.76 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=48.6
Q ss_pred hhhHHHhhhHhhcccCCC---CcccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 4 FLGTVGFGIGIRLGDLSP---GVVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 4 ~l~~~G~~lgi~l~~~s~---~~~~~~H~~iGi~v~~l~~lQ~l~~~~---rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
++.++|++-++.+-.++. .+.---|.-.|+.+.|-..+-.++-.. |..-+.|.|+.|.++-...|.+.+++|+.
T Consensus 163 ~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lVl~mGsi~~l~Gl~ 242 (347)
T PF10951_consen 163 LCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKLVLVMGSISILWGLY 242 (347)
T ss_pred HHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHHHHHHhhHHHHhhhh
Confidence 467888888888754322 111245888888888876666555444 44445677888887666666666666544
Q ss_pred HH
Q 048625 78 NV 79 (140)
Q Consensus 78 ni 79 (140)
-+
T Consensus 243 vl 244 (347)
T PF10951_consen 243 VL 244 (347)
T ss_pred eE
Confidence 33
No 27
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=87.15 E-value=10 Score=29.52 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=40.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~ 87 (140)
.++.||.+=.+-+++..-|.+..+-.|...+..|..+..+|..+--.+++++++.+..=++--+
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn 97 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHN 97 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689998755555544444444332243322234456689999999999998888877666553
No 28
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=86.48 E-value=0.78 Score=31.93 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=15.9
Q ss_pred HHHHHhhhhhchhH-----------Hhhhhc--cccCCCC
Q 048625 113 VNSWVIFCRKSKEE-----------KLRREG--LIGGLNH 139 (140)
Q Consensus 113 v~~~~~~~~k~~~~-----------~~~~~~--~~~~~~~ 139 (140)
+..|...|+|||++ +++-|+ .-+|++|
T Consensus 48 VilwfvCC~kRkrsRrPIYrPvI~~~P~~~~~~~~~GL~~ 87 (94)
T PF05393_consen 48 VILWFVCCKKRKRSRRPIYRPVIGLEPQNLQIHRDDGLRN 87 (94)
T ss_pred HHHHHHHHHHhhhccCCccccccccCCCcccccccCCcce
Confidence 45566666665533 456666 6667665
No 29
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=85.32 E-value=6.8 Score=31.23 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
.++.||.+=.+-+++..-|.+ ...|+.+..+ +..+...|..+.-.+++++++-+..-++
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAi-Lvyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~ 81 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSI-LVYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFD 81 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHH-HHhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888765444433333322 2245544332 2335778888888888887776554443
No 30
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=85.30 E-value=2.3 Score=35.67 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625 68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~ 110 (140)
--+.+...+++++.||+..+-|...|..+|...+++++++.++
T Consensus 263 s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~ 305 (316)
T PRK11085 263 SVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLA 305 (316)
T ss_pred HHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3445667778889999987666666877777766666665543
No 31
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=85.01 E-value=2.9 Score=25.61 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=17.2
Q ss_pred Ccc-hhHHHHHHHHHHHHHHHHHHHHHh
Q 048625 92 YAK-LAYCLCLSTLIGVCIALEVNSWVI 118 (140)
Q Consensus 92 ~w~-i~y~~~~~~~~~~~i~lEv~~~~~ 118 (140)
.|. +.+++++..-..+++.+-++...+
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 467777766677777777766443
No 32
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=84.37 E-value=15 Score=27.81 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhh-hccCCCC--CcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 25 YGLHRKLGFTAFCLGALQTLALL-FRPKTTN--KFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l~~~-~rp~k~~--~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
.+.|+.+=.+. ..+++|.+.+ +||.... +.|+.|.+.|+++.-.+.+++++.....+.
T Consensus 21 f~~Hp~~m~i~--~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~ 81 (183)
T cd08761 21 FSWHPLLMSLG--FLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYY 81 (183)
T ss_pred eehhHHHHHHH--HHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888765433 3444554433 5653211 346667788888887777777666555543
No 33
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=83.62 E-value=5.7 Score=30.66 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=45.1
Q ss_pred cccccchhHHHHHHHHHHHHH-HHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 23 VVYGLHRKLGFTAFCLGALQT-LALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 23 ~~~~~H~~iGi~v~~l~~lQ~-l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
...++|-.-|+++..|+.++. +.-...++++. -|...|...+-+++++=.....+|.+..
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~----~~R~lHi~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRP----WARRLHIYLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999998886 44444443332 3444799999999999999999998764
No 34
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=82.57 E-value=5.7 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred CcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 55 KFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 55 ~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
+.+..|+..|...|-.+++.+.+..+.++..-
T Consensus 40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~ 71 (204)
T COG5658 40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAG 71 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55678999999999999999999888887665
No 35
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=82.50 E-value=17 Score=27.60 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=41.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc
Q 048625 25 YGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~ 87 (140)
...|..+=++.+++++.=....+..- .+.+..++-.|.++|-+++++.+++...|+-...
T Consensus 69 ~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~ 128 (191)
T cd08760 69 FYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPH 128 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCC
Confidence 46888887766666665543333221 2234556778999999999999999999997764
No 36
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=81.98 E-value=18 Score=26.97 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
.++.||.+=.+-+++...|.+. .+|+.|.+ |+.+..+|+.+--.+++++++-+..=++
T Consensus 7 ~Fn~HP~lM~~gfi~l~~eAiL-~~r~~~~~--k~~~k~iH~~l~~la~~~~vvGl~avf~ 64 (144)
T cd08766 7 IFNVHPVLMVIGFIFLAGEAIL-AYKTVPGS--REVQKAVHLTLHLVALVLGIVGIYAAFK 64 (144)
T ss_pred eeeccHHHHHHHHHHHHHHHHH-Hhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588998766555544455432 24555533 3445668988877777777766654443
No 37
>PLN02680 carbon-monoxide oxygenase
Probab=81.02 E-value=14 Score=29.87 Aligned_cols=59 Identities=12% Similarity=0.268 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEV 85 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l 85 (140)
.++.||.+=.+-+++..-|.+.. .|+.+.+ |+.....|+.+--++++++++-+..=++.
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~-yr~~~~~--k~~~K~iH~~L~~lA~~l~vvGl~avfk~ 104 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLA-YKTVPGT--KNLKKLVHLTLQFLAFCLSLIGVWAALKF 104 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhc-ccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899987665555533343322 4555533 33446678777777777776666554443
No 38
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=79.46 E-value=23 Score=26.81 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCC-CCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTT-NKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~-~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
.++.||.+=.+-+++..-|.+.. +|+.+. ...|+....+|+++--++++++++.+..=++
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~-yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~ 71 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIV-YRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFV 71 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHH-hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899998766666544444333 364332 1124456778998888888777776654443
No 39
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=78.90 E-value=2.5 Score=33.30 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHhccccccccCCcchhHHHH
Q 048625 66 FVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLC 100 (140)
Q Consensus 66 ~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~ 100 (140)
.+.-+.+-+.+++++.||+..+-|...|.+.|..+
T Consensus 239 ~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~ 273 (292)
T PF01544_consen 239 IVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFV 273 (292)
T ss_dssp HHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHH
Confidence 34555566788999999999876665677765555
No 40
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=78.43 E-value=1.4 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.581 Sum_probs=22.5
Q ss_pred ceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 57 RKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 57 R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
|+.|...|.+.|..+.+.-++-...|.-+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777888888888887777777776554
No 41
>PF13630 SdpI: SdpI/YhfL protein family
Probab=77.68 E-value=1.7 Score=28.01 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=28.5
Q ss_pred CcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 55 KFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 55 ~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
+....|+..|+..|+..++.|++-+..++-..
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998888766
No 42
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=76.88 E-value=19 Score=30.82 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhccCCCC-CcceeeeehhhhHHH---HHHHHHHHHHHHhccccccc-cC--Ccch---hHHHHHHHH
Q 048625 35 AFCLGALQTLALLFRPKTTN-KFRKYWKSYHHFVGY---ACVVLGVVNVFQGFEVMGEG-RS--YAKL---AYCLCLSTL 104 (140)
Q Consensus 35 v~~l~~lQ~l~~~~rp~k~~-~~R~~w~~~H~~~Gr---~~iiLgivni~lGl~l~~~~-~~--~w~i---~y~~~~~~~ 104 (140)
+++..++++.++-+|.|+++ ++|+.|++.=..-|- .+.-++..|...|+...-+. .. .|.. .|.++.++.
T Consensus 95 ~L~~Li~R~v~fefR~k~~~~~~k~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~gl~ 174 (346)
T COG1294 95 VLFGLIFRGVAFEFRSKIEDPRWKKFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCGLG 174 (346)
T ss_pred HHHHHHHhhhhhhhcccccChhhHhHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHHHH
Confidence 33445666667777876665 567999987655553 34445566889999888322 11 2432 356666666
Q ss_pred HHHHHHHHHHHHHhhhh
Q 048625 105 IGVCIALEVNSWVIFCR 121 (140)
Q Consensus 105 ~~~~i~lEv~~~~~~~~ 121 (140)
.+...++.--.|...+.
T Consensus 175 ~~~~~~l~Ga~~l~~kT 191 (346)
T COG1294 175 LVLMYVLHGAAWLLLKT 191 (346)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66655665666765553
No 43
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=75.86 E-value=16 Score=29.88 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhc
Q 048625 24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGF 83 (140)
Q Consensus 24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl 83 (140)
..-.|..+=++.++++.+-..+.+.-++..+ .. =+--+|-|.|-+++++=.++-..|+
T Consensus 88 ~KliH~~LH~~Alvl~i~gl~avf~~hn~~~-i~-NfySLHSWlGl~~v~ly~~Q~v~GF 145 (245)
T KOG1619|consen 88 SKLIHLGLHIIALVLAIIGLCAVFDSHNLVG-IA-NFYSLHSWLGLCVVILYSLQWVFGF 145 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cc-ceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3467887777777777776666554444333 22 2345899999988887666655554
No 44
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=75.78 E-value=30 Score=25.73 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=31.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 25 YGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
++.||.+=.+-+.+..-|.+..+ |..+..+ |+....+|+.++-++++++++-+..=++
T Consensus 7 Fn~HP~lm~~G~i~l~geaiL~~-~~~~~~~-k~~~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 7 FNVHPLCMVLGLVFLCGEALLVY-RVFRNET-KRSTKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh-ccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788766555555444543333 2222111 2234557888777777777666654433
No 45
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=75.76 E-value=17 Score=30.41 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=31.6
Q ss_pred HHHHHHHhhhccCCC-CCcceeeeehhhhHHHH-HHHHH--HHHHHHhcccc
Q 048625 39 GALQTLALLFRPKTT-NKFRKYWKSYHHFVGYA-CVVLG--VVNVFQGFEVM 86 (140)
Q Consensus 39 ~~lQ~l~~~~rp~k~-~~~R~~w~~~H~~~Gr~-~iiLg--ivni~lGl~l~ 86 (140)
.++...++-+|.+.+ .++|+.|++.--.-+-. ...+| +.|+..|+...
T Consensus 92 li~RgvafefR~~~~~~~~r~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~ 143 (328)
T PF02322_consen 92 LILRGVAFEFRHKADSPRWRRFWDWVFFIGSLLPPFLLGVALGNLVSGLPID 143 (328)
T ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccc
Confidence 344566677888774 57899999877655533 23344 44888888777
No 46
>PLN02810 carbon-monoxide oxygenase
Probab=72.27 E-value=39 Score=27.36 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=15.1
Q ss_pred eehhhhHHHHHHHHHHHHHHHhc
Q 048625 61 KSYHHFVGYACVVLGVVNVFQGF 83 (140)
Q Consensus 61 ~~~H~~~Gr~~iiLgivni~lGl 83 (140)
--.|-|+|-+++++=..+-..|+
T Consensus 114 ySLHSWlGl~tv~Lf~lQw~~Gf 136 (231)
T PLN02810 114 YSLHSWLGIGIISLYGIQWIYGF 136 (231)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777776666665555
No 47
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=71.32 E-value=4.3 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=27.1
Q ss_pred cCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 50 PKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 50 p~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
+++..+.|. |.-.|...|..+.++-.+=.++|+...
T Consensus 51 ~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~~ 86 (88)
T PF13703_consen 51 PKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGLFFS 86 (88)
T ss_pred cCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333335566 777999999999999988888887543
No 48
>COG2717 Predicted membrane protein [Function unknown]
Probab=68.92 E-value=12 Score=29.91 Aligned_cols=43 Identities=21% Similarity=0.507 Sum_probs=29.3
Q ss_pred eeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHH
Q 048625 58 KYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLI 105 (140)
Q Consensus 58 ~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~ 105 (140)
+-|+.+|++ ++.+.+||.+-...+-+.. ..+.+.|.++.++..
T Consensus 144 ~rW~~LHrL-vYl~~~L~~lH~~~s~K~~----~~~~vlY~ii~~~ll 186 (209)
T COG2717 144 KRWKKLHRL-VYLALILGALHYLWSVKID----MPEPVLYAIIFAVLL 186 (209)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHH
Confidence 579999986 6999999998888844332 234566766554333
No 49
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=68.50 E-value=4.2 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=18.6
Q ss_pred ceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 57 RKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 57 R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
|+.+-..|.|.|-++-++-++-.+.|.-
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~ 28 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAV 28 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455677888887777666666666543
No 50
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=66.73 E-value=29 Score=25.11 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=30.5
Q ss_pred cceeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHH
Q 048625 56 FRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVN 114 (140)
Q Consensus 56 ~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~ 114 (140)
.|+++.-+..+.||.+..+=+..+.++. ....+..+.......++++.+...
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~-------~~~~~i~g~~~~~~G~~~i~l~~~ 108 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ-------SILSIIIGLLLFLVGVIYIILGFF 108 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999987654433333333 112234444455555666665443
No 51
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=65.72 E-value=5 Score=33.31 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=19.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHhhhhc
Q 048625 92 YAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREG 132 (140)
Q Consensus 92 ~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~~~~~ 132 (140)
.|+++-++..++.++..+.+-+....+.+|||+-|+|+++-
T Consensus 212 ~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~A 252 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERRA 252 (278)
T ss_pred eEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 35654433333333333322234445555666666666543
No 52
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=65.67 E-value=11 Score=26.89 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHh
Q 048625 96 AYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKL 128 (140)
Q Consensus 96 ~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~ 128 (140)
+..++++++.++.++.-+..|.+++|++|....
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 334566666666677777889888888774333
No 53
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=65.29 E-value=7.6 Score=26.61 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=16.2
Q ss_pred eehhhhHHHHHHHHHHHHHH
Q 048625 61 KSYHHFVGYACVVLGVVNVF 80 (140)
Q Consensus 61 ~~~H~~~Gr~~iiLgivni~ 80 (140)
..+|+|+|+.+++++++=..
T Consensus 34 ~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 34 LRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999887654
No 54
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=64.82 E-value=41 Score=30.77 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHhccccccccCCcch----hHHHHHHHHHHHHHHHHH
Q 048625 65 HFVGYACVVLGVVNVFQGFEVMGEGRSYAKL----AYCLCLSTLIGVCIALEV 113 (140)
Q Consensus 65 ~~~Gr~~iiLgivni~lGl~l~~~~~~~w~i----~y~~~~~~~~~~~i~lEv 113 (140)
-|+|-.+.+.|.+-..+|++..+.++..|+- +..++-.++.+++++-|.
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~ 292 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW 292 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence 6899999999999999999999766445763 333333334444444454
No 55
>PF14007 YtpI: YtpI-like protein
Probab=64.69 E-value=17 Score=25.10 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=36.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
..-..+|+.++.++.-|.+. . + +++=..+|-+.+++|+.|++.|++..
T Consensus 34 ka~ialG~fl~~fgiNQ~~~-~-----~-------st~~~iV~~ifl~lG~~n~~~G~r~y 81 (89)
T PF14007_consen 34 KANIALGIFLILFGINQMFL-F-----G-------STVRLIVGAIFLVLGLFNLFAGIRAY 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH-c-----c-------cHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456899999999999765 2 1 23346789999999999999999766
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.49 E-value=13 Score=27.20 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=2.4
Q ss_pred chhHHH
Q 048625 94 KLAYCL 99 (140)
Q Consensus 94 ~i~y~~ 99 (140)
.+++++
T Consensus 65 ~i~~Ii 70 (122)
T PF01102_consen 65 AIIGII 70 (122)
T ss_dssp CHHHHH
T ss_pred ceeehh
Confidence 344433
No 57
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=61.28 E-value=28 Score=25.37 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc---cccCCcchhHHHHHH
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG---EGRSYAKLAYCLCLS 102 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~---~~~~~w~i~y~~~~~ 102 (140)
-.|..+|.+..++..+-.+.++..|.+.-+ -.|..++-..++..+.++.|=.+--+ +|..+|.+.|.....
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p~------p~~iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~i 102 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPPK------PLHIFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNCFSI 102 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCCC------ceEEehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHHHHH
Confidence 478889998888888877777777755322 23777887777777777777665553 333334445544333
Q ss_pred H
Q 048625 103 T 103 (140)
Q Consensus 103 ~ 103 (140)
+
T Consensus 103 v 103 (118)
T PF10856_consen 103 V 103 (118)
T ss_pred H
Confidence 3
No 58
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=59.83 E-value=41 Score=32.24 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=18.7
Q ss_pred CCCCcceeeeehhhhHHHHHHHHHHHHHH
Q 048625 52 TTNKFRKYWKSYHHFVGYACVVLGVVNVF 80 (140)
Q Consensus 52 k~~~~R~~w~~~H~~~Gr~~iiLgivni~ 80 (140)
++-.+|+-|.|+||.+--+-+.|-++-.|
T Consensus 595 rtPnWRPRfkyyHW~LSflG~sLC~~iMF 623 (1075)
T KOG2082|consen 595 RTPNWRPRFKYYHWSLSFLGASLCLAIMF 623 (1075)
T ss_pred cCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 44568999999999875444444433333
No 59
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=58.54 E-value=33 Score=24.77 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHH---HhhhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625 27 LHRKLGFTAFCLGALQTL---ALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVV 77 (140)
Q Consensus 27 ~H~~iGi~v~~l~~lQ~l---~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv 77 (140)
.+..+- +++.++++|.+ -.+++-+.+ .-.-||..+.+++-..+++-++
T Consensus 45 ~~~~~~-~i~~lA~iQi~vqLvyFlHM~~~--~eg~w~~~~~iFt~~i~vivvv 95 (111)
T COG3125 45 STVTLI-IILGLAVIQILVHLVYFLHMNTK--SEGRWNMGALIFTIFIIVIVVV 95 (111)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHhcccCC--cccceehHHHHHHHHHHHHHHH
Confidence 444443 36677788863 222222221 1234676666666554444433
No 60
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=58.42 E-value=41 Score=21.09 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=11.0
Q ss_pred HHHHHHHHHhccccccccCCcc
Q 048625 73 VLGVVNVFQGFEVMGEGRSYAK 94 (140)
Q Consensus 73 iLgivni~lGl~l~~~~~~~w~ 94 (140)
++|.+-+..|+-+.--|+++|.
T Consensus 6 v~G~~lv~~Gii~~~lPGpG~l 27 (53)
T PF09656_consen 6 VLGWVLVVAGIIMLPLPGPGLL 27 (53)
T ss_pred hHHHHHHHHHHHhhcCCCCcHH
Confidence 4444444555555445655554
No 61
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=58.29 E-value=42 Score=23.55 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=23.8
Q ss_pred eeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 58 KYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 58 ~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
+..|..|.+.-+...+..++.++....+.
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~ 53 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIF 53 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 67789999999999999999886655554
No 62
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=57.68 E-value=59 Score=28.07 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=42.8
Q ss_pred HHHHhhhccCCCC-CcceeeeehhhhHHHHH-HHH--HHHHHHHhccccccc-----c-CCc---chhHHHHHHHHHHHH
Q 048625 42 QTLALLFRPKTTN-KFRKYWKSYHHFVGYAC-VVL--GVVNVFQGFEVMGEG-----R-SYA---KLAYCLCLSTLIGVC 108 (140)
Q Consensus 42 Q~l~~~~rp~k~~-~~R~~w~~~H~~~Gr~~-iiL--givni~lGl~l~~~~-----~-~~w---~i~y~~~~~~~~~~~ 108 (140)
.+.++=+|.+.++ ++|+.|++.-..-+-+. +.+ .+.|...|+....++ . ..| ...|.+..++..++-
T Consensus 100 RgvafEfR~k~~~~~wr~~Wd~~f~vgS~l~~f~~Gv~~g~~v~G~p~~~d~~~~~~~~G~~~~~l~Pf~ll~Gl~~v~l 179 (378)
T PRK15028 100 RPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 (378)
T ss_pred hhhhheecccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCceecccccccccccccHHhhccHHHHHHHHHHHHH
Confidence 3444446766455 56999998775555332 233 456889999884111 1 112 234666666655554
Q ss_pred HHHHHHHHHhhh
Q 048625 109 IALEVNSWVIFC 120 (140)
Q Consensus 109 i~lEv~~~~~~~ 120 (140)
..+.=-.|...|
T Consensus 180 ~~l~Ga~~L~~K 191 (378)
T PRK15028 180 VILQGGVWLQLK 191 (378)
T ss_pred HHHHHHHHHHHH
Confidence 443333354433
No 63
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.35 E-value=14 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCCCC
Q 048625 28 HRKLGFTAFCLGALQTLALLFRPKTTNK 55 (140)
Q Consensus 28 H~~iGi~v~~l~~lQ~l~~~~rp~k~~~ 55 (140)
=..+|++++++.++=++...+||.|++.
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 3467889999988889999999998763
No 64
>PTZ00046 rifin; Provisional
Probab=56.82 E-value=13 Score=31.87 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=4.2
Q ss_pred Hhhhhhch
Q 048625 117 VIFCRKSK 124 (140)
Q Consensus 117 ~~~~~k~~ 124 (140)
.|++||||
T Consensus 338 LRYRRKKK 345 (358)
T PTZ00046 338 LRYRRKKK 345 (358)
T ss_pred HHhhhcch
Confidence 35555555
No 65
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=56.78 E-value=14 Score=31.79 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=4.1
Q ss_pred Hhhhhhch
Q 048625 117 VIFCRKSK 124 (140)
Q Consensus 117 ~~~~~k~~ 124 (140)
.|++|||+
T Consensus 333 LRYRRKKK 340 (353)
T TIGR01477 333 LRYRRKKK 340 (353)
T ss_pred HHhhhcch
Confidence 35555555
No 66
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=56.54 E-value=94 Score=27.27 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 048625 66 FVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 66 ~~Gr~~iiLgivni~lGl~ 84 (140)
..+-..++..+..++.++-
T Consensus 407 i~~~~~~~~~~~~~v~~~~ 425 (507)
T TIGR00910 407 IIAGIGFLLSIFAFFISFL 425 (507)
T ss_pred hHHHHHHHHHHHHHheeee
Confidence 3444444555555555543
No 67
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=54.88 E-value=33 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.104 Sum_probs=21.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 048625 90 RSYAKLAYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 90 ~~~w~i~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
++.|.+.|+=....+..+++++-...-.
T Consensus 14 ~~~WlvtyaDlmTLLl~fFVlL~s~s~~ 41 (58)
T PF13677_consen 14 SPRWLVTYADLMTLLLAFFVLLFSMSSV 41 (58)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999998888886554443
No 68
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=53.99 E-value=27 Score=20.55 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=4.8
Q ss_pred HHHhhhhhchh
Q 048625 115 SWVIFCRKSKE 125 (140)
Q Consensus 115 ~~~~~~~k~~~ 125 (140)
.++-.|+||.+
T Consensus 24 ~~YaCcykk~~ 34 (38)
T PF02439_consen 24 FYYACCYKKHR 34 (38)
T ss_pred HHHHHHHcccc
Confidence 34444444443
No 69
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=53.31 E-value=1.2 Score=33.90 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHhhhhcc
Q 048625 95 LAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGL 133 (140)
Q Consensus 95 i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~~~~~~ 133 (140)
++.++++++-+.+.+++.++-|+.++|+|+++-..+||-
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGk 88 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGK 88 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCc
Confidence 455555554433333333444555556666777778874
No 70
>PLN02351 cytochromes b561 family protein
Probab=52.94 E-value=81 Score=25.73 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccchhHHHHHHHHHHHHHHH-hhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHH
Q 048625 26 GLHRKLGFTAFCLGALQTLA-LLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQ 81 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~-~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~l 81 (140)
+.||.+=. +.+.++|.-+ ...|.-|.+ |+.+..+|..+--.+++++++-+..
T Consensus 52 n~HP~lMv--iGfi~L~geAILvYR~~~~~--~k~~K~lH~~Lh~~Ali~~vvGl~a 104 (242)
T PLN02351 52 VLHPLLMV--IGFILISGEAILVHRWLPGS--RKTKKSVHLWLQGLALASGVFGIWT 104 (242)
T ss_pred cccHHHHH--HHHHHHHHHHHHHhhccccc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57776433 3333444422 223433322 2235556666666666666555555
No 71
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=52.82 E-value=36 Score=21.32 Aligned_cols=26 Identities=19% Similarity=0.682 Sum_probs=21.2
Q ss_pred CCcceeeeehhhhHHHHHHHHHHHHH
Q 048625 54 NKFRKYWKSYHHFVGYACVVLGVVNV 79 (140)
Q Consensus 54 ~~~R~~w~~~H~~~Gr~~iiLgivni 79 (140)
+..|..|...|.+.|...+++..+=+
T Consensus 35 ~~~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 35 GLNKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999886544
No 72
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=51.75 E-value=18 Score=19.51 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=14.7
Q ss_pred eeehhhhHHHHHHHHHHHHHHHhc
Q 048625 60 WKSYHHFVGYACVVLGVVNVFQGF 83 (140)
Q Consensus 60 w~~~H~~~Gr~~iiLgivni~lGl 83 (140)
|+.+|.|++-.+.++-++-...|+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666666655555554
No 73
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=51.22 E-value=35 Score=27.82 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=31.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
..||.+|.++-.+...-.+.+..+.+++ |.. .+....+.++.+.++.+|....
T Consensus 69 ~~HR~~~~~~gl~~l~~~~~~~~~~~~~---~~~-----~~~~~~~~~l~~~Q~~lG~~~V 121 (302)
T PF02628_consen 69 WGHRLLAGLVGLLILALAVWAWRKRRIR---RRL-----RWLALLALVLVILQGLLGAWTV 121 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---cch-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888877666665555444322221 111 3455667777777788877666
No 74
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=50.93 E-value=49 Score=23.25 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
..|..+- +++..++=|++..+++-| +| .|...=-+..++.++..++|.-..
T Consensus 19 ~~Hi~lm--~la~~il~Pi~lvL~~~~-sr-------~~~~~q~~~~~l~~~g~~~g~~~~ 69 (105)
T PF10348_consen 19 YAHIVLM--TLAWVILYPIGLVLGNAR-SR-------WHLPVQTVFLVLMILGLFLGSVYN 69 (105)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHcc-ch-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3454433 334445568887777666 32 154444444444444455554433
No 75
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=50.42 E-value=1.1e+02 Score=26.48 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=26.9
Q ss_pred HHhhhccCCCC-CcceeeeehhhhHHHHH-HHH--HHHHHHHhcccc
Q 048625 44 LALLFRPKTTN-KFRKYWKSYHHFVGYAC-VVL--GVVNVFQGFEVM 86 (140)
Q Consensus 44 l~~~~rp~k~~-~~R~~w~~~H~~~Gr~~-iiL--givni~lGl~l~ 86 (140)
.++-+|.+.++ ++|+.|++....-+-.. ..+ .+.|+..|+.+-
T Consensus 102 vafefR~k~~~~~wr~~wd~~f~vgSll~p~~lGv~~g~~~~G~~~~ 148 (378)
T TIGR00203 102 VAFEYRGKIDHLRWRKVWDWGLFIGSLVPPLVFGVAFGNLLQGVPFD 148 (378)
T ss_pred hheeecccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecc
Confidence 34446777554 56999998876665432 233 345888888654
No 76
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=50.37 E-value=27 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=12.6
Q ss_pred cchhHHHHHHHHHHHHHHHhh
Q 048625 27 LHRKLGFTAFCLGALQTLALL 47 (140)
Q Consensus 27 ~H~~iGi~v~~l~~lQ~l~~~ 47 (140)
.-..+|+..+.-+..|...++
T Consensus 24 ~~~i~g~~~i~~Gi~~l~~~~ 44 (72)
T PF03729_consen 24 LAIILGIWLIISGIFQLISAF 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665444
No 77
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.91 E-value=1.5e+02 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc
Q 048625 51 KTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 51 ~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~ 87 (140)
.|-.|.+..|+..-...--..+++++.+++.|+.-+.
T Consensus 244 ek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~e 280 (374)
T KOG1608|consen 244 EKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAE 280 (374)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455778999977655555678999999999997773
No 78
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=49.60 E-value=1.2e+02 Score=23.51 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=31.7
Q ss_pred hHHHhhhHhhcccCCCCc-----ccccchhHHHHHHHHHHHHHHHhhhccCC
Q 048625 6 GTVGFGIGIRLGDLSPGV-----VYGLHRKLGFTAFCLGALQTLALLFRPKT 52 (140)
Q Consensus 6 ~~~G~~lgi~l~~~s~~~-----~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k 52 (140)
.++-+++|......+++. ..+.|..+|+.++.|+.+-.+--+..|.|
T Consensus 23 v~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 23 VIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344467777665443321 23899999999999999998765544433
No 79
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=48.73 E-value=95 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=16.1
Q ss_pred cccchhHHHHHHHHHHHHHH
Q 048625 25 YGLHRKLGFTAFCLGALQTL 44 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l 44 (140)
...|+.+|+..++++++..+
T Consensus 74 ~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 74 IRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35799999999988877764
No 80
>PF15102 TMEM154: TMEM154 protein family
Probab=48.18 E-value=5.1 Score=30.25 Aligned_cols=8 Identities=25% Similarity=0.381 Sum_probs=3.6
Q ss_pred hhhchhHH
Q 048625 120 CRKSKEEK 127 (140)
Q Consensus 120 ~~k~~~~~ 127 (140)
+|||.|+.
T Consensus 83 kRkr~K~~ 90 (146)
T PF15102_consen 83 KRKRTKQE 90 (146)
T ss_pred eecccCCC
Confidence 44444443
No 81
>PHA02898 virion envelope protein; Provisional
Probab=48.05 E-value=70 Score=22.28 Aligned_cols=58 Identities=10% Similarity=0.233 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cCCcchhHH--HHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 66 FVGYACVVLGVVNVFQGFEVMGEG-RSYAKLAYC--LCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 66 ~~Gr~~iiLgivni~lGl~l~~~~-~~~w~i~y~--~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
..|-++++++.+=-|.=+.-...| +..|+..-+ ++++....+.+++ .-.|.++|+..+
T Consensus 16 i~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~i-fs~y~r~C~~~~ 76 (92)
T PHA02898 16 AFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIF-FKGYNMFCGGNT 76 (92)
T ss_pred HHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCc
Confidence 445555555555444444433334 345764322 2333333322221 234777777644
No 82
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=47.87 E-value=1.1e+02 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.1
Q ss_pred cccchhHHHHHHHHHHHHHHHh
Q 048625 25 YGLHRKLGFTAFCLGALQTLAL 46 (140)
Q Consensus 25 ~~~H~~iGi~v~~l~~lQ~l~~ 46 (140)
.+.|..+|++++++..+=.+..
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999998876665544
No 83
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=47.11 E-value=29 Score=21.36 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=17.8
Q ss_pred HHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 048625 75 GVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 75 givni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
|++.+..|+-..-.|+. -......++++..++.-+.|+....
T Consensus 3 Gil~iv~Gi~~l~~p~~-~~~~~~~i~g~~~i~~Gi~~l~~~~ 44 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDA-SLAALAIILGIWLIISGIFQLISAF 44 (72)
T ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544433431 1112333444444444444444443
No 84
>PRK11513 cytochrome b561; Provisional
Probab=46.48 E-value=49 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFR 49 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~r 49 (140)
+.|..+|++++.+.++..+.-+.+
T Consensus 43 ~~H~s~G~~vl~L~v~Rl~~r~~~ 66 (176)
T PRK11513 43 MIHVSCGISILVLMVVRLLLRLKY 66 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 679999999999999998755543
No 85
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.34 E-value=38 Score=28.37 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=2.8
Q ss_pred hhhhhch
Q 048625 118 IFCRKSK 124 (140)
Q Consensus 118 ~~~~k~~ 124 (140)
+.+||||
T Consensus 280 RYRRKKK 286 (299)
T PF02009_consen 280 RYRRKKK 286 (299)
T ss_pred HHHHHhh
Confidence 3444333
No 86
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=46.28 E-value=1.3e+02 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHhhhccCCCC-CcceeeeehhhhHHHHH-HHH--HHHHHHHhccccccc-----c----CCcchhHHHHHHHHHHHH
Q 048625 42 QTLALLFRPKTTN-KFRKYWKSYHHFVGYAC-VVL--GVVNVFQGFEVMGEG-----R----SYAKLAYCLCLSTLIGVC 108 (140)
Q Consensus 42 Q~l~~~~rp~k~~-~~R~~w~~~H~~~Gr~~-iiL--givni~lGl~l~~~~-----~----~~w~i~y~~~~~~~~~~~ 108 (140)
...++-+|.+.++ ++|+.|++....-+-.+ +.+ .+.|...|+.+..++ . ..|...|+.+.++..++-
T Consensus 100 RgvafEfR~k~~~~~wr~~Wd~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~ 179 (379)
T PRK15003 100 RPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGM 179 (379)
T ss_pred HHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHH
Confidence 3444556777444 56899998876555332 233 446888998662111 1 113345777666665554
Q ss_pred HHHHHHHHH
Q 048625 109 IALEVNSWV 117 (140)
Q Consensus 109 i~lEv~~~~ 117 (140)
..+.=-.|.
T Consensus 180 ~~~~GA~~L 188 (379)
T PRK15003 180 IITQGATYL 188 (379)
T ss_pred HHHHHHHHH
Confidence 443333344
No 87
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=45.55 E-value=1.4e+02 Score=23.41 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=22.8
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 59 YWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 59 ~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
-+|...+..-....+++++-+.+|+-+.
T Consensus 108 k~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888887888888888899998875
No 88
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=45.34 E-value=31 Score=25.43 Aligned_cols=33 Identities=9% Similarity=-0.060 Sum_probs=15.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
+.|..+..+..++.+++.+++- -+-.+..|+||
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LL-grsi~ANRnrK 65 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLL-GRSIQANRNRK 65 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHH-HHHhHhccccc
Confidence 3587765555554444444432 23334444443
No 89
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=44.18 E-value=49 Score=24.48 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=20.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhchhH
Q 048625 93 AKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEE 126 (140)
Q Consensus 93 w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~ 126 (140)
..+.|+.++..+..++++--++.+.+.+|+.+++
T Consensus 42 ~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s~ 75 (129)
T PF02060_consen 42 NEYLYILVVMGFFGFFTVGIMLSYVRSKKREHSH 75 (129)
T ss_dssp STT-HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4467888777777777776677777666665544
No 90
>PHA03048 IMV membrane protein; Provisional
Probab=43.96 E-value=99 Score=21.59 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=6.6
Q ss_pred HHHHhhhhhch
Q 048625 114 NSWVIFCRKSK 124 (140)
Q Consensus 114 ~~~~~~~~k~~ 124 (140)
-.|.++|+..+
T Consensus 65 smy~r~C~~~~ 75 (93)
T PHA03048 65 SMWGRYCTPSK 75 (93)
T ss_pred HHHhcccCCCc
Confidence 34666777554
No 91
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=43.09 E-value=63 Score=20.03 Aligned_cols=34 Identities=3% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhHHhhhhccc
Q 048625 99 LCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLI 134 (140)
Q Consensus 99 ~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~~~~~~~ 134 (140)
+++..++++... +..|.+......+++.++|.++
T Consensus 10 vfav~~flfd~l--imQwiEl~tte~dkCRnMdSVn 43 (53)
T PF10831_consen 10 VFAVFVFLFDTL--IMQWIELITTESDKCRNMDSVN 43 (53)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhhHHHhcCcCCCC
Confidence 344444444443 5678887777777777777654
No 92
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=43.03 E-value=51 Score=19.70 Aligned_cols=15 Identities=13% Similarity=0.033 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHH
Q 048625 96 AYCLCLSTLIGVCIA 110 (140)
Q Consensus 96 ~y~~~~~~~~~~~i~ 110 (140)
+++....+++++++.
T Consensus 10 ~~~~~~v~~~~~F~g 24 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIG 24 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 93
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=41.63 E-value=2e+02 Score=24.73 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=15.2
Q ss_pred hhhccCCCCCcceeeeehhhhHHHHHHHHHH
Q 048625 46 LLFRPKTTNKFRKYWKSYHHFVGYACVVLGV 76 (140)
Q Consensus 46 ~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgi 76 (140)
..+||..+.+ . |.++..+.-+-++..+
T Consensus 342 ~~~~Py~~~~--~--n~~~~~~~~~~~i~~~ 368 (438)
T PF06011_consen 342 FILRPYMDKR--T--NVLNIILSVVRLITLF 368 (438)
T ss_pred HHhChhcccc--c--cHHHHHHHHHHHHHHH
Confidence 4479988653 2 6666655544444333
No 94
>PLN02292 ferric-chelate reductase
Probab=41.13 E-value=57 Score=30.45 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred eeehhhhHHHHHHHHHHHH------HHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625 60 WKSYHHFVGYACVVLGVVN------VFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS 123 (140)
Q Consensus 60 w~~~H~~~Gr~~iiLgivn------i~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~ 123 (140)
++.+|+|+||++++++++= .+.--.........++.....+.++++.+...+-+..-....||+
T Consensus 205 f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~ 274 (702)
T PLN02292 205 SIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRR 274 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhc
No 95
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=40.30 E-value=24 Score=34.27 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=27.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
+-|.|+.+++++.++++-+++-..++..|+|+|+
T Consensus 977 p~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 977 PLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 4577888888888888888877788888888874
No 96
>PLN02631 ferric-chelate reductase
Probab=40.22 E-value=57 Score=30.49 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.1
Q ss_pred eeehhhhHHHHHHHHHHHHH
Q 048625 60 WKSYHHFVGYACVVLGVVNV 79 (140)
Q Consensus 60 w~~~H~~~Gr~~iiLgivni 79 (140)
++.+|+|+||++++++++=.
T Consensus 188 ~i~yHRWlGri~~~la~iH~ 207 (699)
T PLN02631 188 SIKYHIWLGHVSNFLFLVHT 207 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999887653
No 97
>TIGR00930 2a30 K-Cl cotransporter.
Probab=39.40 E-value=1.8e+02 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=19.6
Q ss_pred CCcceeeeehhhhHHHHHHHHHHHHHHH
Q 048625 54 NKFRKYWKSYHHFVGYACVVLGVVNVFQ 81 (140)
Q Consensus 54 ~~~R~~w~~~H~~~Gr~~iiLgivni~l 81 (140)
..+|+.|.++|+|+.-+..++.++-++.
T Consensus 489 p~~RP~fk~~~~~~sllG~l~c~~lmf~ 516 (953)
T TIGR00930 489 PGWRPRFKYYHWWLSLLGASLCCAIMFL 516 (953)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHH
Confidence 3468888889998877766666555544
No 98
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=38.88 E-value=1e+02 Score=21.24 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=36.3
Q ss_pred hhhHHHhhhHhhcccCCCCcccccc-----hhHHHHHHHHHHHHHHHhh-hccCCCCC--cce----eeeehhhhHHHHH
Q 048625 4 FLGTVGFGIGIRLGDLSPGVVYGLH-----RKLGFTAFCLGALQTLALL-FRPKTTNK--FRK----YWKSYHHFVGYAC 71 (140)
Q Consensus 4 ~l~~~G~~lgi~l~~~s~~~~~~~H-----~~iGi~v~~l~~lQ~l~~~-~rp~k~~~--~R~----~w~~~H~~~Gr~~ 71 (140)
.+.+.+..+|+++.++......+.+ ..++++...-..+|.+--. -|+.++.+ ... -....++|+.-.+
T Consensus 15 ~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l 94 (101)
T PF11862_consen 15 ALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLFRPWLARRFKKAPSGVPVLPPDGLPSLQRWIIPLL 94 (101)
T ss_pred HHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcCCCccccchHHHHHHHH
Confidence 3466778889998855443322222 1345544444455554111 12222221 111 2234567777777
Q ss_pred HHHHHH
Q 048625 72 VVLGVV 77 (140)
Q Consensus 72 iiLgiv 77 (140)
++++++
T Consensus 95 lv~Alv 100 (101)
T PF11862_consen 95 LVVALV 100 (101)
T ss_pred HHHHHH
Confidence 766653
No 99
>PF14927 Neurensin: Neurensin
Probab=38.21 E-value=1.2e+02 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhccccc
Q 048625 63 YHHFVGYACVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 63 ~H~~~Gr~~iiLgivni~lGl~l~~ 87 (140)
+-...|.+.+++|++.+..|.-.+.
T Consensus 46 V~~i~g~l~Ll~Gi~~l~vgY~vP~ 70 (140)
T PF14927_consen 46 VGFISGLLLLLLGIVALTVGYLVPP 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3578899999999999999988774
No 100
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=37.89 E-value=88 Score=21.72 Aligned_cols=37 Identities=5% Similarity=0.048 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHH---HhhhccCCCCCcceeeeehhhhHHHHH
Q 048625 33 FTAFCLGALQTL---ALLFRPKTTNKFRKYWKSYHHFVGYAC 71 (140)
Q Consensus 33 i~v~~l~~lQ~l---~~~~rp~k~~~~R~~w~~~H~~~Gr~~ 71 (140)
.+++.++..|.+ -.+++=+.++ ++-||..-.+++-..
T Consensus 39 ~~i~~lA~iQi~VqL~~FLHm~~~~--~~~~n~~~l~ft~~i 78 (94)
T TIGR02901 39 TIIIIFAFIQAGLQLIMFMHAGESE--DGKVQIYNIYYSAFI 78 (94)
T ss_pred HHHHHHHHHHHHHHHHHheeecCCc--ccchHHHHHHHHHHH
Confidence 345567788864 2333333222 234777666665443
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.64 E-value=86 Score=23.52 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=14.0
Q ss_pred ehhhhHHHHHHHHHHHHHHHhccc
Q 048625 62 SYHHFVGYACVVLGVVNVFQGFEV 85 (140)
Q Consensus 62 ~~H~~~Gr~~iiLgivni~lGl~l 85 (140)
+.++...-+++++|++=+..|+-.
T Consensus 2 ~~~~i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 2 KKQRIISIILIILGILLIASGIAA 25 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777776654444433
No 102
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=37.46 E-value=1.6e+02 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhccccccccCCcch
Q 048625 63 YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKL 95 (140)
Q Consensus 63 ~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~i 95 (140)
+|...=....++|.+-+..|+-+.--|+++|..
T Consensus 20 ~~~~~ri~v~v~G~~~~~~Gi~ml~lPGpG~l~ 52 (121)
T TIGR02611 20 YGFVVRPLVLVVGWVVLIVGIITIPLPGPGWLT 52 (121)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Confidence 355444566666777777777666677777764
No 103
>PHA00726 hypothetical protein
Probab=36.46 E-value=45 Score=23.07 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=22.5
Q ss_pred HHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhc
Q 048625 44 LALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGF 83 (140)
Q Consensus 44 l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl 83 (140)
.+++||-.|..+.+.--| |+.+|+=+++-++.+.+.|=
T Consensus 22 ~sLLFRKpK~k~~~~~~~--~r~iGyYlVissv~aL~vsH 59 (89)
T PHA00726 22 TALLFRKPKPKKVKSTLN--HRSIGYYLVISSVLALIVSH 59 (89)
T ss_pred HHHHhcCCCCchhhcCCC--CcceeeeeHHHHHHHHHHHH
Confidence 456666333333333223 78888888888877777653
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=35.59 E-value=1.4e+02 Score=25.14 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=7.1
Q ss_pred HHhcccccccc
Q 048625 80 FQGFEVMGEGR 90 (140)
Q Consensus 80 ~lGl~l~~~~~ 90 (140)
.+|..+.++|+
T Consensus 16 ~~~~~~~~~~G 26 (409)
T TIGR00540 16 VAGPMIAGHQG 26 (409)
T ss_pred HHHHHHcCCCC
Confidence 45667776665
No 105
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=35.13 E-value=83 Score=29.51 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.0
Q ss_pred eeehhhhHHHHHHHHHHHHHH
Q 048625 60 WKSYHHFVGYACVVLGVVNVF 80 (140)
Q Consensus 60 w~~~H~~~Gr~~iiLgivni~ 80 (140)
.+.+|+|+||.+++++++=..
T Consensus 191 ~i~fHrWlGr~~~llallH~i 211 (722)
T PLN02844 191 SVRYHVWLGTSMIFFATVHGA 211 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999988654
No 106
>PTZ00370 STEVOR; Provisional
Probab=32.85 E-value=74 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhhhch
Q 048625 97 YCLCLSTLIGVCIALE-VNSWVIFCRKSK 124 (140)
Q Consensus 97 y~~~~~~~~~~~i~lE-v~~~~~~~~k~~ 124 (140)
|++-+.|+.+..+++- .+.|.+++||++
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 4443444433333332 355877777665
No 107
>PRK11387 S-methylmethionine transporter; Provisional
Probab=32.76 E-value=2.7e+02 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=9.7
Q ss_pred ceeeeehhhhHHHHHHHHHH
Q 048625 57 RKYWKSYHHFVGYACVVLGV 76 (140)
Q Consensus 57 R~~w~~~H~~~Gr~~iiLgi 76 (140)
|++-.+.+.+.....++..+
T Consensus 403 ~~~~~~~~~~~~~l~~~~~~ 422 (471)
T PRK11387 403 LAYRAPWYPLTPILGFVLCL 422 (471)
T ss_pred CCccCCCccHHHHHHHHHHH
Confidence 33333345566555555443
No 108
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=32.06 E-value=75 Score=20.49 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 048625 96 AYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 96 ~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
.++++..++.+.+++....++.
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655
No 109
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=31.94 E-value=58 Score=17.52 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048625 31 LGFTAFCLGALQTLALLFRPKT 52 (140)
Q Consensus 31 iGi~v~~l~~lQ~l~~~~rp~k 52 (140)
+|.++.+..+.=.+.+++||.|
T Consensus 2 i~~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 2 ILLVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHhCHHh
Confidence 4555555445555667788876
No 110
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=31.08 E-value=31 Score=27.79 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHHHHHH
Q 048625 94 KLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 94 ~i~y~~~~~~~~~~~i~ 110 (140)
+|..+++++.++++-++
T Consensus 38 ~I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVI 54 (221)
T ss_pred eeeeeeecchhhhHHHH
Confidence 34444444444444333
No 111
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=30.88 E-value=63 Score=23.92 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=18.4
Q ss_pred ceeeeehh--hhHHHHHHHHHHHHHHHhccc
Q 048625 57 RKYWKSYH--HFVGYACVVLGVVNVFQGFEV 85 (140)
Q Consensus 57 R~~w~~~H--~~~Gr~~iiLgivni~lGl~l 85 (140)
|.=|++|| ..+|-+.++.|++--.+-...
T Consensus 43 g~e~s~Yrci~pfG~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 43 GAEWSCYRCIMPFGVVILIAGVVVTAVAYSF 73 (129)
T ss_pred CCCceEEEEEEEehHHHHHHhhHhheeeEee
Confidence 45577777 457888888887655444333
No 112
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=30.84 E-value=2.3e+02 Score=21.27 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCC--------CCcceee--------------------eehhhhHHHHHHHHHHH
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTT--------NKFRKYW--------------------KSYHHFVGYACVVLGVV 77 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~--------~~~R~~w--------------------~~~H~~~Gr~~iiLgiv 77 (140)
..|..+|++++++.++=.+..+..+.+. .+..+-| |..-++.-.+..++.++
T Consensus 50 ~~H~~~G~~~~~l~l~rl~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~ 129 (211)
T TIGR02125 50 FVHFAAGFVLIAVLLFRVYLAFVGKDSRYERFSFRDPLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILF 129 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHhhcCCCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6799999998888776654433321110 0000111 44455555666677777
Q ss_pred HHHHhcccc
Q 048625 78 NVFQGFEVM 86 (140)
Q Consensus 78 ni~lGl~l~ 86 (140)
-+.+|+-+.
T Consensus 130 ~~lTG~~~~ 138 (211)
T TIGR02125 130 MILTGLALY 138 (211)
T ss_pred HHHHHHHHh
Confidence 888888775
No 113
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=30.83 E-value=87 Score=17.31 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccCC
Q 048625 30 KLGFTAFCLGALQTLALLFRPKT 52 (140)
Q Consensus 30 ~iGi~v~~l~~lQ~l~~~~rp~k 52 (140)
.+|-++.+..+.=.+.+++||.|
T Consensus 6 ~l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 6 SLAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 45555555555555677788876
No 114
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=30.60 E-value=3.5e+02 Score=23.19 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 048625 66 FVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 66 ~~Gr~~iiLgivni~lGl~ 84 (140)
..+-...+...+.+.+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (474)
T TIGR03813 404 FIGGLGFVGSALAFVLSFI 422 (474)
T ss_pred HHHHHHHHHHHHHHheeEe
Confidence 3444555555555555543
No 115
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=30.09 E-value=29 Score=22.49 Aligned_cols=31 Identities=35% Similarity=0.666 Sum_probs=19.6
Q ss_pred CCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625 53 TNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (140)
Q Consensus 53 ~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~ 84 (140)
+.|-|.-|.|+-.-+|-+.++=|++ +.+|++
T Consensus 4 ~~kirrdwhyyafa~glifilngvv-gllgfe 34 (70)
T PF10953_consen 4 PVKIRRDWHYYAFAIGLIFILNGVV-GLLGFE 34 (70)
T ss_pred chHhhhhhHHHHHHHHHHHHhhchh-hhceec
Confidence 4566778888887777766555533 345553
No 116
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=29.88 E-value=1.3e+02 Score=21.55 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=9.2
Q ss_pred chhHHHHHHHHHHHHHHHhh
Q 048625 28 HRKLGFTAFCLGALQTLALL 47 (140)
Q Consensus 28 H~~iGi~v~~l~~lQ~l~~~ 47 (140)
...+|+++-.+..+=|+...
T Consensus 17 ~yviGFiLSliLT~i~F~lv 36 (109)
T PRK10582 17 TYMTGFILSIILTVIPFWMV 36 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444333
No 117
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=29.63 E-value=2.7e+02 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccccc
Q 048625 52 TTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGE 88 (140)
Q Consensus 52 k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~ 88 (140)
++++.+.++.-.|...--++...-.+|+++|+++..|
T Consensus 109 ~~s~~~~~ftAi~~g~~~a~~w~Ll~Ng~vgfQl~eD 145 (293)
T PF12271_consen 109 PGSSVYPYFTAIQIGLISATCWCLLINGFVGFQLWED 145 (293)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhheeeeccC
Confidence 3456789999999999888888889999999999943
No 118
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=29.56 E-value=1.4e+02 Score=18.70 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 048625 95 LAYCLCLSTLIGVCIA 110 (140)
Q Consensus 95 i~y~~~~~~~~~~~i~ 110 (140)
|.|.++++.++.+|.+
T Consensus 4 WvY~vi~gI~~S~ym~ 19 (52)
T PF14147_consen 4 WVYFVIAGIIFSGYMA 19 (52)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6788888877777655
No 119
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=29.32 E-value=2.7e+02 Score=21.45 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchh
Q 048625 99 LCLSTLIGVCIALEVNSWVIFCRKSKE 125 (140)
Q Consensus 99 ~~~~~~~~~~i~lEv~~~~~~~~k~~~ 125 (140)
++.+...+++++.-.+.|....++|.+
T Consensus 147 ~i~~~~~li~~~~~~~~wr~l~~~~~~ 173 (175)
T PF07856_consen 147 AILVPVLLIFVVFIQHFWRSLVSHKYE 173 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333334444444444566666665554
No 120
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=29.14 E-value=2.2e+02 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.9
Q ss_pred Hhhhhh--chhHHhhhhccccCCCC
Q 048625 117 VIFCRK--SKEEKLRREGLIGGLNH 139 (140)
Q Consensus 117 ~~~~~k--~~~~~~~~~~~~~~~~~ 139 (140)
++.||| +..|+.--||..|+||.
T Consensus 124 w~lck~~l~t~EDilDdG~in~SN~ 148 (150)
T PF05745_consen 124 WKLCKRWLGTLEDILDDGQINNSNK 148 (150)
T ss_pred HHHHHHHHHHHHHhhccccccCCCc
Confidence 344555 33677778899999984
No 121
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=28.87 E-value=35 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCCcceeeeehhhhHHHHHHHHHHHHHHHh
Q 048625 53 TNKFRKYWKSYHHFVGYACVVLGVVNVFQG 82 (140)
Q Consensus 53 ~~~~R~~w~~~H~~~Gr~~iiLgivni~lG 82 (140)
++..+.+++.+.-.+-.++++.+++..++|
T Consensus 34 ~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 34 RSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 444556666666667777777777777665
No 122
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.67 E-value=1.5e+02 Score=26.43 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=12.2
Q ss_pred HHHHHHHhccccccccCCcchhHHH
Q 048625 75 GVVNVFQGFEVMGEGRSYAKLAYCL 99 (140)
Q Consensus 75 givni~lGl~l~~~~~~~w~i~y~~ 99 (140)
|.+|+..|.-......+.|.+.+.+
T Consensus 414 ~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 414 GSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred hHHHHhhhhhcccccCcchhhhhHH
Confidence 4555556655554222345554444
No 123
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=28.51 E-value=2.1e+02 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCCC
Q 048625 29 RKLGFTAFCLGALQTLALLFRPKTTN 54 (140)
Q Consensus 29 ~~iGi~v~~l~~lQ~l~~~~rp~k~~ 54 (140)
..++....+++.++.+....++++++
T Consensus 39 ~~l~~~l~~~~~~l~~~~~~~~~~~~ 64 (141)
T PF07331_consen 39 RLLGILLLILSLLLLVRSFRGPDEDE 64 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 45666666777777777666653333
No 124
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=28.06 E-value=1.9e+02 Score=25.53 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHH-HHHHHHHHHHHhccccc
Q 048625 67 VGYA-CVVLGVVNVFQGFEVMG 87 (140)
Q Consensus 67 ~Gr~-~iiLgivni~lGl~l~~ 87 (140)
.|.. +-+.+++....||++..
T Consensus 354 ~gT~~~s~~~~va~ifGMNl~~ 375 (414)
T KOG2662|consen 354 IGTFCLSVFSVVAGIFGMNLPS 375 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCccc
Confidence 4443 34566788889999985
No 125
>PRK05415 hypothetical protein; Provisional
Probab=27.98 E-value=1.7e+02 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.085 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 048625 65 HFVGYACVVLGVVNVFQG 82 (140)
Q Consensus 65 ~~~Gr~~iiLgivni~lG 82 (140)
+|+.-.+..+....+...
T Consensus 68 ~~~~~~l~~l~~~~~~~~ 85 (341)
T PRK05415 68 KLLWGGLGLLGSLVVGQA 85 (341)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 126
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.81 E-value=1.9e+02 Score=24.38 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=6.4
Q ss_pred HHhcccccccc
Q 048625 80 FQGFEVMGEGR 90 (140)
Q Consensus 80 ~lGl~l~~~~~ 90 (140)
..|..+.++|+
T Consensus 16 ~~~~~~~~~~G 26 (398)
T PRK10747 16 VVGPMIAGHQG 26 (398)
T ss_pred HHHHHHcCCCC
Confidence 44666666664
No 127
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=3e+02 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhccccccc
Q 048625 71 CVVLGVVNVFQGFEVMGEG 89 (140)
Q Consensus 71 ~iiLgivni~lGl~l~~~~ 89 (140)
.++.|++.+-.|+-+..+|
T Consensus 134 ~ii~Gvl~ii~g~ill~~P 152 (185)
T COG3247 134 MIISGVLGIIAGLILLFNP 152 (185)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4677777777887777554
No 128
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=26.67 E-value=1.9e+02 Score=20.16 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=15.6
Q ss_pred HHHHHHHHHHH---HhhhccCCCCCcceeeeehhhhHH
Q 048625 34 TAFCLGALQTL---ALLFRPKTTNKFRKYWKSYHHFVG 68 (140)
Q Consensus 34 ~v~~l~~lQ~l---~~~~rp~k~~~~R~~w~~~H~~~G 68 (140)
+++.++..|.+ -+++|=+. +..+-||..-..++
T Consensus 38 ~i~~~A~iQi~vqL~~FlHl~~--~~~~~~n~~~l~Ft 73 (96)
T TIGR02847 38 IIIVLAVVQILVHLVFFLHLNT--SSEQRWNLISLLFT 73 (96)
T ss_pred HHHHHHHHHHHHHHHHHhhccC--ccccchHHHHHHHH
Confidence 44456777864 23333322 22345665554444
No 129
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=26.28 E-value=2.3e+02 Score=19.77 Aligned_cols=9 Identities=22% Similarity=0.689 Sum_probs=6.2
Q ss_pred HHHHhhhhh
Q 048625 114 NSWVIFCRK 122 (140)
Q Consensus 114 ~~~~~~~~k 122 (140)
-.|.++|+-
T Consensus 66 s~ygr~C~~ 74 (92)
T PF05767_consen 66 SMYGRYCRP 74 (92)
T ss_pred HHHhhhcCC
Confidence 457788864
No 130
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.02 E-value=91 Score=26.18 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhhhch
Q 048625 97 YCLCLSTLIGVCIALE-VNSWVIFCRKSK 124 (140)
Q Consensus 97 y~~~~~~~~~~~i~lE-v~~~~~~~~k~~ 124 (140)
|++-+.|+.++.+++- .+.|.+++||++
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444444444433332 355776666654
No 131
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=25.79 E-value=3.1e+02 Score=21.13 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccccccc-CCcc--hhHHHHHHHHHHHH
Q 048625 38 LGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGR-SYAK--LAYCLCLSTLIGVC 108 (140)
Q Consensus 38 l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~-~~w~--i~y~~~~~~~~~~~ 108 (140)
.+.+|......|.+|- +..|+..+-.++++|-.++++ +|+. -+|+ +.|..+++++.+..
T Consensus 32 at~~~~~~~~~~~~~v-------~~m~~is~~lv~vFGglTl~~-----~d~~FIk~KpTIi~~lfa~~ll~s~ 93 (178)
T TIGR00997 32 ATIIAIGLSYVKYKKV-------EKMQWISFVLIVVFGGLTLIF-----HDSRFIKWKPTIIYGLFAVILLGSQ 93 (178)
T ss_pred HHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHHHHHHHHh-----CChhhhhhHHHHHHHHHHHHHHHHH
Confidence 4566665555444332 457999999999999777776 3332 2244 57877766666544
No 132
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=25.77 E-value=64 Score=22.41 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 048625 95 LAYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 95 i~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
|..+.++..+++..+.+|..++-
T Consensus 54 Ili~f~i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 54 ILIAFWIFFIVLTLLATEFIKFE 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44555666777777888887763
No 133
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.72 E-value=1.7e+02 Score=21.58 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q 048625 65 HFVGYACVVLG 75 (140)
Q Consensus 65 ~~~Gr~~iiLg 75 (140)
.|+|-++++.|
T Consensus 28 l~~g~aA~~vg 38 (140)
T COG1585 28 LWLGLAALAVG 38 (140)
T ss_pred HHHHHHHHHHH
Confidence 35554444443
No 134
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.66 E-value=77 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 93 AKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 93 w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
..++|..+-+ .++.++|-++..++-+||+.
T Consensus 58 ~SVAyVLVG~--Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 58 FSVAYVLVGS--GVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEEEEehhhH--HHHHHHHHHHHHHHHHHHHh
Confidence 4467755433 22223343444444444433
No 135
>PF15050 SCIMP: SCIMP protein
Probab=25.54 E-value=1.5e+02 Score=21.94 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=8.3
Q ss_pred hHHhhhhccccCC
Q 048625 125 EEKLRREGLIGGL 137 (140)
Q Consensus 125 ~~~~~~~~~~~~~ 137 (140)
+|++--|++.+.+
T Consensus 53 deEkmYENv~n~~ 65 (133)
T PF15050_consen 53 DEEKMYENVLNQS 65 (133)
T ss_pred cHHHHHHHhhcCC
Confidence 5566667777654
No 136
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=25.32 E-value=24 Score=26.16 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHhhhhhch-----hHHhhhhcccc
Q 048625 114 NSWVIFCRKSK-----EEKLRREGLIG 135 (140)
Q Consensus 114 ~~~~~~~~k~~-----~~~~~~~~~~~ 135 (140)
..+++++|||+ -|+--.|||-|
T Consensus 98 ~lv~rrcrrr~~~ttPIeeTgg~~~~~ 124 (129)
T PF12191_consen 98 FLVWRRCRRREKFTTPIEETGGEGCPG 124 (129)
T ss_dssp ---------------------------
T ss_pred HHHHhhhhccccCCCcccccCCCCCcc
Confidence 34445555554 35556666654
No 137
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.54 E-value=2.2e+02 Score=18.82 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=7.1
Q ss_pred HHhhhhhchhHHhhh
Q 048625 116 WVIFCRKSKEEKLRR 130 (140)
Q Consensus 116 ~~~~~~k~~~~~~~~ 130 (140)
++.++|+.+.++.|.
T Consensus 53 ~YFK~k~drr~~a~g 67 (68)
T PF04971_consen 53 LYFKIKEDRRKAARG 67 (68)
T ss_pred hhhhhhHhhhHhhcC
Confidence 444444444454544
No 138
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.44 E-value=1.3e+02 Score=22.01 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=7.8
Q ss_pred chhHHHHHHHHHHH
Q 048625 94 KLAYCLCLSTLIGV 107 (140)
Q Consensus 94 ~i~y~~~~~~~~~~ 107 (140)
-|+++++++++.++
T Consensus 68 ~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 68 GIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHH
Confidence 35666666665543
No 139
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=24.07 E-value=1.4e+02 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=20.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHH
Q 048625 90 RSYAKLAYCLCLSTLIGVCIALEVNS 115 (140)
Q Consensus 90 ~~~w~i~y~~~~~~~~~~~i~lEv~~ 115 (140)
+..|+++|.=++..+..++++|-.+.
T Consensus 16 ~~~W~vtYAD~vTlLlaFFvlL~s~s 41 (259)
T PRK07734 16 DESWLIPYADLLTLLLALFIVLFAMS 41 (259)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 35799999989999988888864444
No 140
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=23.97 E-value=38 Score=29.82 Aligned_cols=34 Identities=15% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625 53 TNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM 86 (140)
Q Consensus 53 ~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~ 86 (140)
++.+|..|.++|+|.|-++..+=++-.++|.-+.
T Consensus 2 ~s~~~~~wr~lHfyaGL~v~pfl~ll~lTG~~~l 35 (442)
T COG3182 2 KSRYRRVWRWLHFYAGLLVAPFLFLLALTGSLLL 35 (442)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567888999999998777666666666665443
No 141
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=23.38 E-value=2.6e+02 Score=19.27 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 048625 96 AYCLCLSTLIGVCIAL 111 (140)
Q Consensus 96 ~y~~~~~~~~~~~i~l 111 (140)
++.++.++..++..++
T Consensus 74 a~liv~~~~l~la~i~ 89 (121)
T PF07332_consen 74 AFLIVAGLYLLLALIL 89 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 142
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.33 E-value=2.8e+02 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcccccccc
Q 048625 72 VVLGVVNVFQGFEVMGEGR 90 (140)
Q Consensus 72 iiLgivni~lGl~l~~~~~ 90 (140)
+++=++.+++|..+++.++
T Consensus 8 ~~ll~agi~~g~~~~~qqg 26 (400)
T COG3071 8 FVLLLAGIGVGLAIAGQQG 26 (400)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3444577888888886544
No 143
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=23.06 E-value=1.4e+02 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhHHhhhhcc
Q 048625 103 TLIGVCIALEVNSWVIFCRKSKEEKLRREGL 133 (140)
Q Consensus 103 ~~~~~~i~lEv~~~~~~~~k~~~~~~~~~~~ 133 (140)
....++...+.+-.++..||.+|...++||.
T Consensus 411 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (455)
T TIGR00892 411 VSAGLFLAIGNYINYRLLAKEQKAALEREGA 441 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3333344444444444455545555666664
No 144
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.99 E-value=69 Score=22.02 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=20.8
Q ss_pred hhHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcce
Q 048625 5 LGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRK 58 (140)
Q Consensus 5 l~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~ 58 (140)
.+.+++++|+... |+.+|+++.+... .+...+|--|+++-+.
T Consensus 25 ~~~~~~~~Gi~~~----------~~l~g~~lg~~~~--~~~~~lrr~K~g~~~~ 66 (95)
T TIGR02762 25 PGATLFGIGILSG----------KALIGLILGAAVM--LIWKRLRRIKGGEGEN 66 (95)
T ss_pred HHHHHHHHHHHHh----------hHHHHHHHHHHHH--HHHHHHHHHHcCCChh
Confidence 4556677777642 4456665544322 2322255555554343
No 145
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=22.80 E-value=1.4e+02 Score=15.86 Aligned_cols=22 Identities=23% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048625 31 LGFTAFCLGALQTLALLFRPKT 52 (140)
Q Consensus 31 iGi~v~~l~~lQ~l~~~~rp~k 52 (140)
+|.++.+..+.=.+.+++||.|
T Consensus 3 l~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3444444334444556678865
No 146
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=22.73 E-value=3.9e+02 Score=21.08 Aligned_cols=112 Identities=13% Similarity=0.283 Sum_probs=62.0
Q ss_pred CeehhhHHHhhhHhhcccC----------CCC------------cccccchhHHHHHHHHHHHHHHHhh---hccCCCCC
Q 048625 1 SAFFLGTVGFGIGIRLGDL----------SPG------------VVYGLHRKLGFTAFCLGALQTLALL---FRPKTTNK 55 (140)
Q Consensus 1 ~g~~l~~~G~~lgi~l~~~----------s~~------------~~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~ 55 (140)
++++++.+.|.||+...+- ... ...+..+.+-.++-+.+.+-.++.+ +||+.+
T Consensus 9 t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~~~~d~a~~hY~~l~~sP~~v~~~Lh~v~~lglig~~iKl~kp~e~-- 86 (196)
T PF08229_consen 9 TGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTDEAFDNAETHYQTLHNSPPIVKYILHIVIGLGLIGLLIKLYKPSES-- 86 (196)
T ss_pred eeeehHhhHHHHHHHHHcccchhHHhcCCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcCCcHH--
Confidence 4678888999999864331 110 1123445555555555455555544 455544
Q ss_pred cceeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcc----------h-hHHHHHHHHHHHHHHHHHHHHH
Q 048625 56 FRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAK----------L-AYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 56 ~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~----------i-~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
..+|++.-..+=-+.+++=+.|+-.|+.....+ .|. + +-=++++++.+-.++||.=.|+
T Consensus 87 -~~lFdg~SL~Ly~~~i~vYltni~~gi~~~~~~--~~~~v~r~~~l~VlAASn~Ii~~~LvGVLvLQaG~~Y 156 (196)
T PF08229_consen 87 -NKLFDGASLVLYVFGICVYLTNIVPGIRSVSSG--NWGEVDREDGLRVLAASNTIIALVLVGVLVLQAGQWY 156 (196)
T ss_pred -hhcccchhHHHHHHHHHHHhHhhHhHHHhcCCC--CcccccHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHH
Confidence 458887665544445555578888999887322 231 1 1112344444455667765565
No 147
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=22.64 E-value=1.9e+02 Score=21.97 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=21.3
Q ss_pred hHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHH
Q 048625 6 GTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQ 42 (140)
Q Consensus 6 ~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ 42 (140)
+++|..+|.++....+ +.-....+|+.++..+..+
T Consensus 73 ~~~g~~iG~~l~~~l~--~~~l~~~~~~~ll~~~~~~ 107 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLP--DDILKLIFGLFLLLLAIYM 107 (240)
T ss_pred hHHHHHHHHhhhcchh--HHHHHHHHHHHHHHHHHHH
Confidence 5667777777765432 1235666777666666555
No 148
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=22.48 E-value=2.4e+02 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 048625 96 AYCLCLSTLIGVCIALEVNSWV 117 (140)
Q Consensus 96 ~y~~~~~~~~~~~i~lEv~~~~ 117 (140)
+|+.+-....++++.+|+.+..
T Consensus 247 W~~AfGL~vTLVWLYlEILRLL 268 (274)
T PF12811_consen 247 WYAAFGLLVTLVWLYLEILRLL 268 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777777655
No 149
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.19 E-value=1.3e+02 Score=18.20 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=21.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCC
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRPKTTN 54 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~ 54 (140)
+.-...|++.+.+.++-++...+||+.+.
T Consensus 9 ~~a~~~~l~~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 9 GLADSWGLLYLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 34566777777777777778888987754
No 150
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=21.57 E-value=13 Score=35.75 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=35.8
Q ss_pred cceeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcchhHHHHHH
Q 048625 56 FRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLS 102 (140)
Q Consensus 56 ~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~ 102 (140)
.|-.|+.++-.+=-++++-|++...+|+.-.+.+ ++|.-.-++.++
T Consensus 146 l~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~-~GW~eG~aI~~s 191 (1034)
T KOG0204|consen 146 LRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIE-DGWIEGVAILLS 191 (1034)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhhccCCCC-cccccchhheee
Confidence 6788999999988899999999999999888655 368754444444
No 151
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=21.56 E-value=2.9e+02 Score=20.55 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHH
Q 048625 69 YACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVN 114 (140)
Q Consensus 69 r~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~ 114 (140)
-.+++.++++++++ + +.+...++.+...+...+++.|..
T Consensus 132 ~~l~i~~l~~~f~~-----~--~~~~~~is~~~~~lf~~~l~~Dt~ 170 (205)
T PF01027_consen 132 IGLIIFGLVSIFLP-----S--SPLYLLISYIGILLFSLYLVYDTQ 170 (205)
T ss_pred HHHHHHHHHHHHhc-----c--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777787765 1 224445555555555566665554
No 152
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=21.47 E-value=5e+02 Score=21.87 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 048625 65 HFVGYACVVLGV 76 (140)
Q Consensus 65 ~~~Gr~~iiLgi 76 (140)
.+.....+++.+
T Consensus 387 ~~~~~l~~~~~~ 398 (442)
T TIGR00908 387 ILTPGVALVLAC 398 (442)
T ss_pred chHHHHHHHHHH
Confidence 344444444443
No 153
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=21.07 E-value=45 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=19.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhcc
Q 048625 26 GLHRKLGFTAFCLGALQTLALLFRP 50 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~~rp 50 (140)
..-..+|+.++++.++-|-+.++-+
T Consensus 12 ~~e~aigltv~f~~~L~PagWVLsh 36 (44)
T PF02285_consen 12 PAEQAIGLTVCFVTFLGPAGWVLSH 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567889999999999998776543
No 154
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=20.90 E-value=2.4e+02 Score=21.32 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcccccccc----CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625 69 YACVVLGVVNVFQGFEVMGEGR----SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS 123 (140)
Q Consensus 69 r~~iiLgivni~lGl~l~~~~~----~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~ 123 (140)
|++++++..-.++-+.+.++-. ++. ..|..+.+++.++-.+.++..+.+..+++
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~-~~~~~~a~i~l~ilai~q~~~~~~~~~~~ 60 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRY-IPLLYFAAILLLILAIVQLWRWFRPKRRK 60 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556666666666666664221 111 23444444444444455566666444443
No 155
>PF07937 DUF1686: Protein of unknown function (DUF1686); InterPro: IPR012468 The members of this family are all hypothetical proteins of unknown function expressed by the eukaryotic parasite Encephalitozoon cuniculi GB-M1. The region in question is approximately 250 amino acids long.
Probab=20.12 E-value=2.2e+02 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhcc
Q 048625 71 CVVLGVVNVFQGFE 84 (140)
Q Consensus 71 ~iiLgivni~lGl~ 84 (140)
++++++-|+.++.-
T Consensus 95 ~~v~~~GNivm~~a 108 (185)
T PF07937_consen 95 MCVFGAGNIVMGAA 108 (185)
T ss_pred HHHHHHhHHHHHHH
Confidence 34455555555543
No 156
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.09 E-value=2.2e+02 Score=21.33 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.9
Q ss_pred HhhhccCCCCCccee
Q 048625 45 ALLFRPKTTNKFRKY 59 (140)
Q Consensus 45 ~~~~rp~k~~~~R~~ 59 (140)
...+|.++++|+|.+
T Consensus 35 ~~Y~r~r~~tKyRDL 49 (149)
T PF11694_consen 35 IKYLRNRLDTKYRDL 49 (149)
T ss_pred HHHHHhcCcchhhhH
Confidence 344899999999985
Done!