Query 048625
Match_columns 140
No_of_seqs 107 out of 333
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 91.3 0.14 4.7E-06 31.6 2.6 38 91-128 8-45 (54)
2 4ev6_A Magnesium transport pro 91.2 0.29 9.9E-06 39.4 5.2 49 71-123 289-337 (339)
3 2iub_A CORA, divalent cation t 89.0 0.24 8E-06 40.4 3.0 52 68-123 310-361 (363)
4 2knc_A Integrin alpha-IIB; tra 85.5 0.49 1.7E-05 29.1 2.2 34 91-124 11-44 (54)
5 2ks1_B Epidermal growth factor 78.8 3.6 0.00012 24.0 4.2 18 93-110 11-28 (44)
6 2l2t_A Receptor tyrosine-prote 76.2 3.4 0.00012 24.2 3.5 18 93-110 10-27 (44)
7 2k1a_A Integrin alpha-IIB; sin 65.0 5.4 0.00018 23.1 2.6 34 91-124 9-42 (42)
8 1kqf_C FDH-N gamma, formate de 58.5 50 0.0017 24.1 7.8 61 26-86 55-135 (217)
9 2jwa_A Receptor tyrosine-prote 51.6 15 0.00051 21.4 3.0 22 100-121 18-39 (44)
10 2k21_A Potassium voltage-gated 50.2 20 0.0007 25.6 4.1 33 92-124 50-82 (138)
11 2rdd_B UPF0092 membrane protei 44.2 26 0.00087 19.2 3.1 13 118-130 22-34 (37)
12 4gd3_A NI/Fe-hydrogenase 1 B-t 43.3 99 0.0034 22.9 7.7 22 26-47 61-82 (235)
13 2knc_B Integrin beta-3; transm 35.5 86 0.003 20.0 5.4 15 93-107 11-25 (79)
14 2xq2_A Sodium/glucose cotransp 34.0 2.2E+02 0.0074 24.2 10.0 17 116-132 571-587 (593)
15 4djk_A Probable glutamate/gamm 33.5 1.9E+02 0.0064 23.3 8.7 15 67-81 415-429 (511)
16 3l1l_A Arginine/agmatine antip 21.0 1.9E+02 0.0064 22.7 5.8 7 64-70 387-393 (445)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=91.32 E-value=0.14 Score=31.61 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=27.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHh
Q 048625 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKL 128 (140)
Q Consensus 91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~ 128 (140)
+.|.+..+++.+.+.++-+++-..++..|+|+++++..
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~ 45 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKME 45 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhh
Confidence 45777777777777777666666777888888875443
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=91.22 E-value=0.29 Score=39.43 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625 71 CVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS 123 (140)
Q Consensus 71 ~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~ 123 (140)
.+.+.+++++.||+..+-|...|.++|-+++++++++.++ .++.++||+
T Consensus 289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~----~~~~fkrk~ 337 (339)
T 4ev6_A 289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI----FVYIFRRSG 337 (339)
T ss_dssp SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH----HHHHHHTTT
T ss_pred HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH----HHHHHHHcC
Confidence 3456778899999988667667888887777777666544 333455554
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=89.01 E-value=0.24 Score=40.41 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625 68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS 123 (140)
Q Consensus 68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~ 123 (140)
.-+.+.+.+++++.||+..+-|...|.++|.+++++++++.++ .++.++||+
T Consensus 310 t~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~----~~~~Fkrk~ 361 (363)
T 2iub_A 310 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI----MVVYFKKKK 361 (363)
T ss_dssp HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH----HHTTTTSCC
T ss_pred HHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHH----HHHHHHHcc
Confidence 3445566778888899887656556888887777777666544 344555554
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=85.54 E-value=0.49 Score=29.05 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=23.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
+.|.+..+++.+.+.++-+++-..++..|+|+++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 3466666677777776666665677777888776
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.79 E-value=3.6 Score=24.02 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=10.8
Q ss_pred cchhHHHHHHHHHHHHHH
Q 048625 93 AKLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 93 w~i~y~~~~~~~~~~~i~ 110 (140)
..|+-+++.++.+++.++
T Consensus 11 ~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHH
Confidence 346666666666665555
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.18 E-value=3.4 Score=24.19 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=9.5
Q ss_pred cchhHHHHHHHHHHHHHH
Q 048625 93 AKLAYCLCLSTLIGVCIA 110 (140)
Q Consensus 93 w~i~y~~~~~~~~~~~i~ 110 (140)
..|+-+++.++.+++.+.
T Consensus 10 ~aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHH
Confidence 345555555555555444
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=65.04 E-value=5.4 Score=23.05 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=21.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
+-|.+..+++.+.+.++-+..-..++..++|+++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~GFFkR~~~ 42 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 42 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 3466666667777666666655666677777663
No 8
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=58.50 E-value=50 Score=24.11 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=37.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhh--hccCCCC------------------CcceeeeehhhhHHHHHHHHHHHHHHHhccc
Q 048625 26 GLHRKLGFTAFCLGALQTLALL--FRPKTTN------------------KFRKYWKSYHHFVGYACVVLGVVNVFQGFEV 85 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~--~rp~k~~------------------~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l 85 (140)
..|..+|++++++.++-.+-.. +.|.|++ +...-+|......-.++.++.++-+.+|+-+
T Consensus 55 ~~H~~~G~~~~~l~~~r~~r~~r~~~p~~~~~~~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~ 134 (217)
T 1kqf_C 55 ILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVII 134 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999987776544111 1233321 1112356566555566667777777888877
Q ss_pred c
Q 048625 86 M 86 (140)
Q Consensus 86 ~ 86 (140)
.
T Consensus 135 ~ 135 (217)
T 1kqf_C 135 W 135 (217)
T ss_dssp C
T ss_pred H
Confidence 6
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.61 E-value=15 Score=21.38 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 048625 100 CLSTLIGVCIALEVNSWVIFCR 121 (140)
Q Consensus 100 ~~~~~~~~~i~lEv~~~~~~~~ 121 (140)
+++++.++.+.+-+.-|.+.+|
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 3443333333333333443333
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=50.16 E-value=20 Score=25.61 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=24.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625 92 YAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (140)
Q Consensus 92 ~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~ 124 (140)
...+.|+.++..+..++++--++.+.+.+|+.+
T Consensus 50 ~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~ 82 (138)
T 2k21_A 50 KLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEH 82 (138)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHhHhhhccc
Confidence 456789888888888777777777876666643
No 11
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=44.23 E-value=26 Score=19.20 Aligned_cols=13 Identities=15% Similarity=-0.003 Sum_probs=6.7
Q ss_pred hhhhhchhHHhhh
Q 048625 118 IFCRKSKEEKLRR 130 (140)
Q Consensus 118 ~~~~k~~~~~~~~ 130 (140)
++.+||.||.+++
T Consensus 22 RPQ~Kr~K~~~~m 34 (37)
T 2rdd_B 22 RPQQKRTKEHKKL 34 (37)
T ss_dssp HHHHHHHHHHTTG
T ss_pred hhHHHHHHHHHHH
Confidence 5555555554443
No 12
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=43.27 E-value=99 Score=22.92 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=17.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhh
Q 048625 26 GLHRKLGFTAFCLGALQTLALL 47 (140)
Q Consensus 26 ~~H~~iGi~v~~l~~lQ~l~~~ 47 (140)
..|..+|++++++.++-.+..+
T Consensus 61 ~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 61 LIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999988865433
No 13
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.53 E-value=86 Score=20.01 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=6.4
Q ss_pred cchhHHHHHHHHHHH
Q 048625 93 AKLAYCLCLSTLIGV 107 (140)
Q Consensus 93 w~i~y~~~~~~~~~~ 107 (140)
+.++.+++.+++++.
T Consensus 11 ~~Iv~gvi~gilliG 25 (79)
T 2knc_B 11 LVVLLSVMGAILLIG 25 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 444444444444333
No 14
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=33.98 E-value=2.2e+02 Score=24.18 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=1.5
Q ss_pred HHhhhhhchhHHhhhhc
Q 048625 116 WVIFCRKSKEEKLRREG 132 (140)
Q Consensus 116 ~~~~~~k~~~~~~~~~~ 132 (140)
+.++.+||++.+.++.|
T Consensus 571 ~~~~~~~~~~~~~~~~~ 587 (593)
T 2xq2_A 571 GIKKLIKASYKSGGSPG 587 (593)
T ss_dssp HHC--------------
T ss_pred HHHHHhcCCCCCCCCCC
Confidence 44555555555455444
No 15
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=33.52 E-value=1.9e+02 Score=23.26 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 048625 67 VGYACVVLGVVNVFQ 81 (140)
Q Consensus 67 ~Gr~~iiLgivni~l 81 (140)
..-..++..++.++.
T Consensus 415 ~~~~~~~~~~~~~~~ 429 (511)
T 4djk_A 415 VAIVGLLTSIMAFIV 429 (511)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHe
Confidence 333333333333333
No 16
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=20.97 E-value=1.9e+02 Score=22.69 Aligned_cols=7 Identities=14% Similarity=-0.320 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 048625 64 HHFVGYA 70 (140)
Q Consensus 64 H~~~Gr~ 70 (140)
+.+++-.
T Consensus 387 ~~~~~~~ 393 (445)
T 3l1l_A 387 YLAVTTI 393 (445)
T ss_dssp THHHHHH
T ss_pred hHHHHHH
Confidence 3443333
Done!