BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048626
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1
Length = 385
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 52/195 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
E F+E V+ A +H++F VV+C + SPGF Q ++ +A
Sbjct: 183 ERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQ 242
Query: 132 -----------EEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
+EVL +V + + DTKAA EV QH VE A
Sbjct: 243 VHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ +A+ TL I+D+LFR+ +ATR +YV LV+SVK++ GT +FSS+ S LGQLTGV
Sbjct: 303 NEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLTGV 362
Query: 218 AAILRFPLPNLTKND 232
AAILRFP+P L+ +
Sbjct: 363 AAILRFPVPELSDQE 377
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRKD+ + V ++P + +D+W YNLV D A T+RKV ++ +G +
Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI ENEY H
Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1
Length = 385
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 103/195 (52%), Gaps = 52/195 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQ-CHL----------HLLLE------- 130
E F+E V+ A +H+ F+VV+C + SPGF Q C LLLE
Sbjct: 183 ERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKFLQ 242
Query: 131 ----------AEEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
+EVL +V + + DTKAA EV QH VE A
Sbjct: 243 VHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHGPDRAFYGLKQVEKA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ MA+ TL I+D+LFR+ +ATR +YV LV+SVK++ GT +FSS+ S L QLTGV
Sbjct: 303 NEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGV 362
Query: 218 AAILRFPLPNLTKND 232
AAILRFP+P L+ +
Sbjct: 363 AAILRFPVPELSDQE 377
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRK++ + V ++P + +D+W YNLV D A T+RKV ++ +G +
Sbjct: 1 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI ENEY H
Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3
Length = 385
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 52/195 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
E F+E V+ A +H++F VV+C + SPGF Q ++ +A
Sbjct: 183 ERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQ 242
Query: 132 -----------EEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
+E L +V + + DTKAA EV QH VE A
Sbjct: 243 VHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ +A+ TL I+D+LFR+ +ATR +YV LV+SVK++ GT +FSS+ S LGQLTGV
Sbjct: 303 NEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLTGV 362
Query: 218 AAILRFPLPNLTKND 232
AAILRFP+P L+ +
Sbjct: 363 AAILRFPVPELSDQE 377
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRKD+ + V ++P + +D+W +NLV D A T+RKV ++ +G +
Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTFNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI ENEY H
Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1
Length = 385
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 52/195 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQ-CHL----------HLLLE------- 130
E F+E V+ A +H++F VV+C + SPGF Q C LLLE
Sbjct: 183 ERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKFLQ 242
Query: 131 ----------AEEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVA 159
+E L +V + + DTKAA EV+ HVE A
Sbjct: 243 VHSSSGHKYVLKEALCDPAVTSRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKHVEKA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ MA+ TL I+D+LFR+ +ATR +YV LV+SV+++ GT +FSS+ S LGQLTGV
Sbjct: 303 NEAMAIDTLLISDELFRHQDVATRARYVKLVDSVRENMGTVRIFSSLHVSGEQLGQLTGV 362
Query: 218 AAILRFPLPNLTKND 232
AAILRFP+ L+ +
Sbjct: 363 AAILRFPVAELSDQE 377
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRKDL + V +IP + +D+W YNL+ D A T+RKV ++ +G +
Sbjct: 1 MKLVRKDLEKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
++ + ++ + +K NI ENEY H
Sbjct: 61 IRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2
Length = 385
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 101/195 (51%), Gaps = 52/195 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
E F+E V+ A +H+ F+VV+C + SPGF Q +L +A
Sbjct: 183 ERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQQAVKTDNKLLLENRSKFLQ 242
Query: 132 -----------EEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
+E L +V + + DTKAA EV QH VE A
Sbjct: 243 VHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ MA+ TL I+D+LFR+ +ATR +YV LV+SVK++ GT +FSS+ S L QLTGV
Sbjct: 303 NEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGV 362
Query: 218 AAILRFPLPNLTKND 232
AAILRFP+P L+ +
Sbjct: 363 AAILRFPVPELSDQE 377
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRK++ + V ++P + +D+W YNLV D A T+RKV ++ +G +
Sbjct: 1 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI ENEY H
Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2
Length = 385
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 104/200 (52%), Gaps = 54/200 (27%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
E F+E V+ A +H+ F+VV+C + SPGF Q ++ +A
Sbjct: 183 ERFYEQVVQAIQRHIHFDVVKCVLVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQ 242
Query: 132 -----------EEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
+E L +V + + DTKAA EV QH VE A
Sbjct: 243 VHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ MA+ TL I+D+LFR+ +ATR +YV LV+SVK++ GT +FSS+ S L QLTG+
Sbjct: 303 NEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGI 362
Query: 218 AAILRFPLPNLT--KNDKCS 235
AAILRFP+P L+ +ND S
Sbjct: 363 AAILRFPVPELSDQENDSSS 382
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++VRKD+ + V ++P + +D+W YNLV D A T+RKV ++ +G +
Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI ENEY H
Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTI 102
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2
Length = 395
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 52/187 (27%)
Query: 92 FFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------------- 131
F+E V+ + L+HV+F+VV+C I SPGF +Q + ++ +A
Sbjct: 185 FYEQVMQSILRHVNFDVVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVH 244
Query: 132 ---------EEVLYASSVMNMIKDTKAAQEV---------------------QHVEVAHQ 161
E+L +V+ + DTKAA EV +HV A +
Sbjct: 245 ASSGFKHSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAE 304
Query: 162 RMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAA 219
A++TL I+D+LFR ++ RK+YV+LV S++D+GG +FSSM S L QLTG+AA
Sbjct: 305 SQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMHISGEQLAQLTGIAA 364
Query: 220 ILRFPLP 226
+LRFP+P
Sbjct: 365 LLRFPMP 371
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M+++ K + +V ++P +S+D+W AYNL+A D + T+RKV +T +G +
Sbjct: 1 MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSI-----KNILENEYFFESVLHAF 100
V+ I S+ +D + + +NI EN+Y H
Sbjct: 61 VRTTLTIAVESID---FDTQACVLRLKGRNIEENQYVKMGAYHTL 102
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1
Length = 385
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 52/198 (26%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
E F+E+V+ L+H +F+VV+C + SPGF ++Q +L EA
Sbjct: 183 ERFYEAVMQGILRHFNFDVVKCILVASPGFVKDQFISYLFKEAVRQDCKLLLENRSKFMV 242
Query: 132 -----------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVA 159
+EVL +V + DTKAA EV+ HVE A
Sbjct: 243 VHSSSGHKYSLKEVLCDPAVTARLSDTKAAGEVKALEDFYKMLQQEPDRAFYGLAHVERA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
+ +A+ L I+D LFR+ +ATR +YV LV++VK++GGT +FSS+ S L QL+GV
Sbjct: 303 SEALAIDILLISDTLFRHQDVATRGRYVRLVDNVKENGGTVRIFSSLHVSGEQLNQLSGV 362
Query: 218 AAILRFPLPNLTKNDKCS 235
AAILRFP+ ++++ ++ S
Sbjct: 363 AAILRFPIADVSEPEENS 380
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++V KD+ + V +IP +++D+W YNL+ D A T+RKV ++ +G +
Sbjct: 1 MKLVHKDIEKDNAGQVTLIPDEAEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSSR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ + ++ + +K NI EN+Y H
Sbjct: 61 VRTTLTLCVETIDFDSQACQLRVKGTNIQENQYVKMGAYHTI 102
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1
Length = 383
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 52/191 (27%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQ-CH----------LHLLLEAE----- 132
E F+E V+ L+H++F+VV+ + SPGF Q C L +LLE
Sbjct: 183 EKFYEQVMQGILRHINFDVVKVVLVASPGFVREQFCEFLFLRAVKQDLKILLENRGKFLQ 242
Query: 133 ------------EVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
EVL +V + DTKAA E+ QH VE A
Sbjct: 243 VHSSSGRKYSLTEVLCDPAVTARLSDTKAACEIKALGDFYKMLQHEPDRAFYGIKQVEKA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
++ +AV TL +TD+LFR+ + TR +YV LV+SVKD+GGT +FSS+ S L QLTGV
Sbjct: 303 NEALAVDTLLVTDELFRHQDVPTRTRYVRLVDSVKDNGGTVRIFSSLHVSGEQLNQLTGV 362
Query: 218 AAILRFPLPNL 228
AAILRFP+ +L
Sbjct: 363 AAILRFPVADL 373
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M+++RKD+ + V +IP +++D+W YNL+ D A T+RKV ++ +G +
Sbjct: 1 MKLIRKDIEKDNAGQVTLIPEEAEDMWHTYNLLHVGDSLQASTIRKVQTESSTGSVGSNR 60
Query: 61 VKLKSEIWWPSLSGKLYDKEGSIK--NILENEYFFESVLHAF 100
V+ I ++ + +K NI EN+Y H
Sbjct: 61 VRTTLTICVETIDFDSQACQLRVKGINIQENQYVKMGAYHTI 102
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6
PE=3 SV=1
Length = 381
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 93/191 (48%), Gaps = 52/191 (27%)
Query: 90 EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEAE---------------- 132
E F+E+V AF++HV+ VV+C + S GF ++ HL+ A+
Sbjct: 183 EKFYEAVSTAFMRHVNLQVVKCVIVASRGFVKDAFMQHLIAHADANGKKFTTEQRAKFML 242
Query: 133 ------------EVLYASSVMNMIKDTKAAQEVQ---------------------HVEVA 159
EVL V + DTKA EV+ HV A
Sbjct: 243 THSSSGFKHALKEVLETPQVALRLADTKAQGEVKALNQFLELMSTEPDRAFYGFNHVNRA 302
Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
+Q +A++TL + D LFR I TR+KYV LV SV++ G H+FSSM S L QLTG
Sbjct: 303 NQELAIETLLVADSLFRAQDIETRRKYVRLVESVREQNGKVHIFSSMHVSGEQLAQLTGC 362
Query: 218 AAILRFPLPNL 228
AAILRFP+P+L
Sbjct: 363 AAILRFPMPDL 373
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVV 48
M+ ++ + +G V ++ +++D+W YNL+ D A T+RKVV
Sbjct: 1 MKQFKRGIERDGTGFVVLMAEEAEDMWHIYNLIRIGDIIKASTIRKVV 48
>sp|P33309|DOM34_YEAST Protein DOM34 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DOM34 PE=1 SV=2
Length = 386
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 146 DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSS 205
D KA + V A + A+ L +TD + + IA R++Y+ L++SV+ +GG A V S+
Sbjct: 295 DDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLST 354
Query: 206 M-SQG-NLGQLTGVAAILRFPLPNLTKND 232
+ S G L QLTG+A IL++PLP+L ++D
Sbjct: 355 LHSLGEELDQLTGIACILKYPLPDLDEDD 383
>sp|Q9USL5|DOM34_SCHPO Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dom34 PE=1 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 26/125 (20%)
Query: 124 HLHLLLEAEEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQR 162
H+H L E+L +V + + DTK QE++ HV A +
Sbjct: 249 HIHSL---NEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFEL 305
Query: 163 MAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAI 220
A+ L I+D LFR++ IATRKK+V LV VK+ ++FSS+ S L L+G+AAI
Sbjct: 306 GAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAI 365
Query: 221 LRFPL 225
L +P+
Sbjct: 366 LTYPV 370
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEW 60
M++++K++ NG + M P + +D+W YN++ D A T+R+VV+ +G
Sbjct: 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSR 60
Query: 61 VKLKSEI 67
V +K I
Sbjct: 61 VVMKLRI 67
>sp|A6UR75|PELO_METVS Protein pelota homolog OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=pelA PE=3 SV=1
Length = 348
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 164 AVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAIL 221
AV+TL ITD+ R R ++VNSV++SGG V S+ S L L G++A+L
Sbjct: 288 AVETLLITDEFLRRN----RSTVEEMVNSVENSGGKFVVISTEHDSGRQLKALGGISALL 343
Query: 222 RFPL 225
RFP+
Sbjct: 344 RFPV 347
>sp|A6UUY1|PELO_META3 Protein pelota homolog OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=pelA PE=3 SV=1
Length = 348
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
A V V+ A A++TL ITD+ R R+ DL+NSV+ GG++ + S+
Sbjct: 273 AVYGVDDVKNALNYSAIETLLITDEFLR----KNRRILEDLINSVEAIGGSSIIISTEYD 328
Query: 209 --GNLGQLTGVAAILRFPL 225
L L G+ +LRFP+
Sbjct: 329 VGKQLKALGGIGGLLRFPI 347
>sp|Q8TZ98|PELO_METKA Protein pelota homolog OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pelA PE=3 SV=1
Length = 353
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 133 EVLYASSVMNMIKDTKAAQEVQHVEVAHQRM---------------------AVQTLHIT 171
E++ +V +++++ A+EV+H+E +R+ A+ L +
Sbjct: 235 EMIRRGAVERAVEESRVAEEVKHLEEVFKRIGKGDDKVAYGVRECLKAAEFGAIDVLLVA 294
Query: 172 DDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ--GNLGQLTGVAAILRFPLPN 227
D+ FR + + ++ V + +G + S+ + L +L G+AA+LRF +P
Sbjct: 295 DEKFREAMVEGEEDVLNAVKYAERTGAEVLIVSTEHEWGERLRELGGIAALLRFSIPT 352
>sp|A4G0A4|PELO_METM5 Protein pelota homolog OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pelA PE=3 SV=1
Length = 348
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
AA ++ V A A+ TL +TD+ R R+ +L+NSV++ G + S+
Sbjct: 273 AAYGIESVNNAMNYSAIDTLLLTDEYLRRN----RRNIEELMNSVENINGNVLIISTEHD 328
Query: 209 G--NLGQLTGVAAILRFPL 225
L L G++A+LRFP+
Sbjct: 329 AGKQLKALGGISALLRFPI 347
>sp|A6VI74|PELO_METM7 Protein pelota homolog OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pelA PE=3 SV=1
Length = 348
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
AA ++ V A A+ TL +TD+ R R+ +L+NSV++ G+ + S+
Sbjct: 273 AAYGIESVNNAMNYSAIDTLLLTDEYLRRN----RRTIEELMNSVENINGSILIISTEHD 328
Query: 209 G--NLGQLTGVAAILRFPL 225
L L G++A+LRFP+
Sbjct: 329 AGKQLKALGGISALLRFPI 347
>sp|A0B6U3|PELO_METTP Protein pelota homolog OS=Methanosaeta thermophila (strain DSM 6194
/ PT) GN=pelA PE=3 SV=2
Length = 347
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 117 GFTE--NQCHLHLLLEAEEVLYASSVMN-----MIKDTKAAQEVQHVEVAHQRMAVQTLH 169
GF E + + ++EA + + +M+ + D +AA ++ V A A++TL
Sbjct: 232 GFQEVLRRGTVDRIVEASRISRETRLMDDLMKEIATDGRAAYGIREVREAANYGAIETLM 291
Query: 170 ITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGN--LGQLTGVAAILRFPLPN 227
I D L R + + L+ V G +FS+ + L L GVAA+LRF +P
Sbjct: 292 IVDQLVRRGDVES------LIRDVAAGRGRVVIFSTEFEPGERLEALGGVAALLRFRIPG 345
>sp|Q6M133|PELO_METMP Protein pelota homolog OS=Methanococcus maripaludis (strain S2 /
LL) GN=pelA PE=3 SV=1
Length = 348
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
AA ++ V A A+ TL +TD+ R R+ +L+NSV++ G + S+
Sbjct: 273 AAYGIESVNNAMNFSAIDTLLLTDEYLRRN----RRSVENLMNSVENINGNIIIVSTEHD 328
Query: 209 GN--LGQLTGVAAILRFPL 225
L L G++A+LRFP+
Sbjct: 329 AGKQLKALGGISALLRFPI 347
>sp|A9A8K6|PELO_METM6 Protein pelota homolog OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pelA PE=3 SV=1
Length = 348
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
AA ++ V A A+ TL +TD+ R R+ +L+N+V++ G + S+
Sbjct: 273 AAYGIESVSNAMNYSAIDTLLLTDEYLRRN----RRTIEELMNNVENINGNILIISTEHD 328
Query: 209 G--NLGQLTGVAAILRFPL 225
L L G++A+LRFP+
Sbjct: 329 AGKQLKALGGISALLRFPI 347
>sp|Q57638|PELO_METJA Protein pelota homolog OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pelA PE=3 SV=1
Length = 347
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ 208
A + V+ A + A+ TL ++D L RN I ++++ ++ GG + SS
Sbjct: 274 AVYGIDEVKKALEYSAIDTLLVSDSLVRNHEIEK------IIDTTEEMGGKVVIVSSEHD 327
Query: 209 G--NLGQLTGVAAILRFPL 225
L L G+A +LRFP+
Sbjct: 328 AGKQLKALGGIAGLLRFPI 346
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 16 VKMIPVDSDDLWFAYNLVAGKDPFLAITLRKV 47
+K++P + DDLW YN++ D A+T R+V
Sbjct: 13 IKLMPENLDDLWVLYNIIEEGDKIFAVTERRV 44
>sp|Q0W6H4|PELO_UNCMA Protein pelota homolog OS=Uncultured methanogenic archaeon RC-I
GN=pelA PE=3 SV=1
Length = 357
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 132 EEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVN 191
E L + + + KD KA + A AV+TL I D+ R + L+
Sbjct: 259 EAQLIEALLSEIAKDGKATYGFAETKRAVDYGAVETLLIADETLRGLREKGARDIESLMR 318
Query: 192 SVKDSGGTAHVFSSMSQ--GNLGQLTGVAAILRFPL 225
V+ + G VFS+ + L +L GVA+ILRFP+
Sbjct: 319 DVEHARGKVVVFSTEFEPGQRLEKLGGVASILRFPI 354
>sp|Q96VH2|YC01B_YEAST Putative pelota-like protein YCL001W-B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YCL001W-B PE=3 SV=1
Length = 84
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 146 DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSS 205
D KA + E A + A++TL ITD + + + R+KY+DL+ + ++ G V S+
Sbjct: 12 DNKAWYGAEETERAAKLDAIETLLITDSVLKRNDVKKREKYLDLIENSGNNNGKIFVLST 71
>sp|Q6NCX7|GPMI_RHOPA 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=gpmI PE=3 SV=1
Length = 504
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ +Q L D N I V ++ +K SGGT H+ +S G +
Sbjct: 64 EVGHLNIGAGRVVMQDLPRISDAIANGEIERAPGLVAFIDKLKASGGTCHLMGLVSPGGV 123
Query: 212 GQL 214
L
Sbjct: 124 HSL 126
>sp|Q9HPR5|PELO_HALSA Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pelA PE=3 SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 142 NMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD-----LVNSVKDS 196
M D KAA + V+ A + AV+ L I D+ R A +VD LV +V+
Sbjct: 267 QMATDGKAAYGIDEVQKAVEFGAVEDLLILDERLR-LERAGEGDWVDVDVNDLVRTVEQQ 325
Query: 197 GGTAHVFS-SMSQG-NLGQLTGVAAILRFPL 225
GG+ VFS + G L L G+ A+LR+ L
Sbjct: 326 GGSVTVFSHEFAPGEQLRNLGGIGAVLRYRL 356
>sp|B0R5R9|PELO_HALS3 Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pelA PE=3 SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 142 NMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD-----LVNSVKDS 196
M D KAA + V+ A + AV+ L I D+ R A +VD LV +V+
Sbjct: 267 QMATDGKAAYGIDEVQKAVEFGAVEDLLILDERLR-LERAGEGDWVDVDVNDLVRTVEQQ 325
Query: 197 GGTAHVFS-SMSQG-NLGQLTGVAAILRFPL 225
GG+ VFS + G L L G+ A+LR+ L
Sbjct: 326 GGSVTVFSHEFAPGEQLRNLGGIGAVLRYRL 356
>sp|B9LQI7|PELO_HALLT Protein pelota homolog OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pelA PE=3 SV=1
Length = 355
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 132 EEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDL-- 189
E L + + KA + V A + A++TL + DD R +D+
Sbjct: 256 EATLIDDLTAEIAQGAKATYGPEDVAEAAEFGAIETLLVVDDRLRTERQGEGDWSIDVNE 315
Query: 190 -VNSVKDSGGTAHVFSS-MSQG-NLGQLTGVAAILRFPL 225
+ SV+ GG VFSS + G L L G+AAILR+ L
Sbjct: 316 VIESVEQQGGDVVVFSSEFAPGEQLSNLGGIAAILRYRL 354
>sp|Q3INN9|PELO_NATPD Protein pelota homolog OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=pelA PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYV---DLVNSVKDSGGTAHVFS 204
KAA V V A + A++TL I D+ R V D++ +V+ GG VFS
Sbjct: 272 KAAYGVDEVAEAAEFGAIETLLILDERLREERAGEGDWAVDVNDIIENVEQQGGEVVVFS 331
Query: 205 -SMSQG-NLGQLTGVAAILRFPL 225
G L L G+AA+LR+ L
Sbjct: 332 HEFDPGQQLANLGGIAALLRYRL 354
>sp|Q01055|V120_SHV21 Capsid assembly protein 63 OS=Saimiriine herpesvirus 2 (strain 11)
GN=63 PE=3 SV=1
Length = 899
Score = 34.3 bits (77), Expect = 0.81, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 138 SSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSG 197
+ +N++K T + Q+ HQ L ++ N + + K+Y++++N+V D
Sbjct: 46 TDFLNILKQTSS----QYSTFIHQHFLFYLLKLSTFSTLNYDLESIKQYMNILNNVCDVA 101
Query: 198 GTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCIED 257
T H S S L T + I ++ N T + E IVP F C+E+
Sbjct: 102 TTIHATS--SSNFLNNQTVINHIKQYITSNAT------FTGLSEPIVPNNVISTFRCVEE 153
Query: 258 V 258
V
Sbjct: 154 V 154
>sp|Q76I89|NDC80_CHICK Kinetochore protein NDC80 homolog OS=Gallus gallus GN=NDC80 PE=1
SV=1
Length = 640
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 31/221 (14%)
Query: 14 RSVKMIPVDSD-----DLWFAYNLVAGKDPF------LAITLRKVVRQTKSGGKDAEWVK 62
R +K+IP+ ++ D +N AG + + L ++V QT+ + A K
Sbjct: 423 RKLKLIPISAENSKGHDFEIHFNPEAGPNCLVKYRTQIKAPLMEIVNQTEEEIRKATQRK 482
Query: 63 LKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQ 122
+ E ++ + +K+ S+K + E + + H LK + +CA
Sbjct: 483 MSLEDTLEQVNAMVAEKKSSVKTLKEEAEKLDDLYHQKLKEAEEEEQKCAN--------- 533
Query: 123 CHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQ-HVEVAHQRMAVQTLHITDDLFR----- 176
L LL + +++L + + + T ++Q ++ Q ++ D+L R
Sbjct: 534 -ELELLEKHKQLLESGVNEGLSEATNELHDIQRQYQIVMQTTTEESRKAGDNLNRLLEVI 592
Query: 177 NTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGV 217
T + + +KY+D NS D MS+ L LTG+
Sbjct: 593 TTHVVSIEKYLDEQNSKIDRDYEEF----MSEDLLSTLTGI 629
>sp|A3DMX7|PELO_STAMF Protein pelota homolog OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=pelA PE=3 SV=1
Length = 356
Score = 34.3 bits (77), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKV 47
M+I+ KDL +K++P D DDLW YN++ D A T R +
Sbjct: 1 MKILEKDLRKG---YLKILPEDQDDLWALYNIIKPLDRVTATTSRDI 44
>sp|Q9V0V3|PELO_PYRAB Protein pelota homolog OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pelA PE=3 SV=1
Length = 356
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 76 LYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVL 135
L ++E K I+ F++ + FL+ E++ + + + EV+
Sbjct: 193 LIERENVQKVIVAGPGFYKENFYGFLRE------NYPELAGKVVLDDTSMGGRVGVYEVI 246
Query: 136 YASSVMNMIKDTKAAQEVQHVEVAHQRM--------------------AVQTLHITDDLF 175
+V + +T+ AQE++ VE +R+ AV TL + D+L
Sbjct: 247 KRGTVDKVYTETRVAQEIKLVEKVIERIAKDEPVAYGLKDVEEAVNYGAVDTLLVLDELL 306
Query: 176 RNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGN--LGQLTGVAAILRFPL 225
+ R++ +++ ++ V SS +G L L G+AAILRF +
Sbjct: 307 KGD---DRERIEEIMEMARNLRANVVVVSSEHEGGDKLKALGGIAAILRFKI 355
>sp|Q5FU33|GPMI_GLUOX 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Gluconobacter oxydans (strain 621H) GN=gpmI PE=3 SV=1
Length = 510
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 151 QEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGN 210
EV H+ + R+ +Q L R+ ++A ++ + ++K SGGT H+ +S G
Sbjct: 66 SEVGHLNIGAGRVVMQELPRISRSARDGSLAQNPALLEFIAALKASGGTCHLMGLISPGG 125
Query: 211 L 211
+
Sbjct: 126 V 126
>sp|C5A5T8|PELO_THEGJ Protein pelota homolog OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=pelA PE=3 SV=1
Length = 357
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 26/114 (22%)
Query: 133 EVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHIT 171
EV+ +V + + + A+EVQ VE A AV+TL +
Sbjct: 244 EVIKRGTVDRVYHENRVAKEVQLVEKVLEHVARNTGLATYGLREVEEAVNYGAVETLLVL 303
Query: 172 DDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGN--LGQLTGVAAILRF 223
D+L + R++ +L+++V+ + G + SS +G L L G+AA+LRF
Sbjct: 304 DELLKGE---HRERIEELMDAVRYARGEVVIVSSEHEGGEKLKALGGLAALLRF 354
>sp|P94459|PPSD_BACSU Plipastatin synthase subunit D OS=Bacillus subtilis (strain 168)
GN=ppsD PE=1 SV=2
Length = 3603
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 67 IWWPSLSGKLY------DKEGSI--KNILENE----YFFESVLHAFLKHVDFNVV----- 109
WWP +Y +KE + K I E + +F S+LHAFL+H+ + V
Sbjct: 1695 FWWPYAGASVYLLPQGGEKEPEVIAKAIEEQKITAMHFVPSMLHAFLEHIKYRSVPIKTN 1754
Query: 110 RCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEV 153
R + G Q HL+ E+L S+ N T+A E
Sbjct: 1755 RLKRVFSG--GEQLGTHLVSRFYELLPNVSITNSYGPTEATVEA 1796
>sp|Q9HJ74|PELO_THEAC Protein pelota homolog OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=pelA PE=1 SV=1
Length = 339
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 21/158 (13%)
Query: 1 MRIVRKDLIPNGPRSVKMIPVDS-DDLWFAYNLVAGKDPFLAITLRKV-----VRQTKSG 54
MRI+ +DL S I ++S DDLW+ N+++ D AIT R+V V++++
Sbjct: 1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRER 56
Query: 55 GKDAEWVKLKSE-IWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAE 113
+ ++LK E I + +L IL E KH V +E
Sbjct: 57 ERIPITIRLKVEKIEFQDFDNRL--------RILGT--VIEGPEDTKGKHQSITVTVDSE 106
Query: 114 ISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQ 151
IS + H+ LL EA + Y + + D AQ
Sbjct: 107 ISITKEWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQ 144
>sp|Q3SGA3|GPMI_THIDA 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=gpmI PE=3 SV=1
Length = 513
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 124 HLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATR 183
H H L+ A E S + + K EV H+ + R+ Q D + T
Sbjct: 40 HPHTLIHASE-----SEVGLPKGQMGNSEVGHLNIGAGRVVYQEFTRIDRAIESGYFYTN 94
Query: 184 KKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
++ V+ +D+G T HV +S G +
Sbjct: 95 PALLNAVHLARDNGKTLHVLGLLSDGGV 122
>sp|Q46C69|PELO_METBF Protein pelota homolog OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pelA PE=3 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 132 EEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD--- 188
E L + + D KAA + V+ A AV+TL + D+ R R+K D
Sbjct: 254 ESALMEDLIREISMDGKAAYGLGDVKNALNFGAVETLLVADETLRE----GREKGEDIDK 309
Query: 189 LVNSVKDSGGTAHVFSSMSQ--GNLGQLTGVAAILRFPL 225
L+ V+ + G VFS+ + L +L G+AA+LRF +
Sbjct: 310 LLREVEQAQGKVVVFSTAFEPGEKLHKLGGIAALLRFKV 348
>sp|A4WWV3|GPMI_RHOS5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=gpmI PE=3 SV=1
Length = 506
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 23/61 (37%)
Query: 151 QEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGN 210
EV H + R+ L D A D + VK GGTAH+ +S G
Sbjct: 63 SEVGHTNIGAGRVVAMDLGAIDLAIEEGTFARNPALCDFIAKVKAKGGTAHLMGVVSDGG 122
Query: 211 L 211
+
Sbjct: 123 V 123
>sp|Q8TSZ1|PELO_METAC Protein pelota homolog OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=pelA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 146 DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDL---VNSVKDSGGTAHV 202
D KAA V+ A + AV+TL I D+ R R+K D+ + V+ + G V
Sbjct: 268 DGKAAYGFADVKNALKYGAVETLLIADETLRE----GREKGEDIDKVLMEVEQAQGKVVV 323
Query: 203 FSSMSQGN--LGQLTGVAAILRFPL 225
FS+ + L +L GVAA+LRF +
Sbjct: 324 FSTAFEPGEKLHKLGGVAALLRFKV 348
>sp|Q8PVZ0|PELO_METMA Protein pelota homolog OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=pelA
PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 30/152 (19%)
Query: 100 FLKHVDFNVVRCAEISPGFTENQCHLHL--------------LLEAEEVLYASSVM-NMI 144
FLK+ FN S TE+ + + +++ + SS+M ++I
Sbjct: 205 FLKY--FNETESEMASKALTEDTSMIGMSGFQEVLRRGAVDRIMQESRIARESSLMEDLI 262
Query: 145 K----DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD---LVNSVKDSG 197
+ D KAA V+ A AV+TL I D+ R R+K D L+ V+ +
Sbjct: 263 REISMDGKAAYGFADVKNALGYGAVETLLIADETLRE----GREKGEDIDKLLMEVEQAQ 318
Query: 198 GTAHVFSSMSQ--GNLGQLTGVAAILRFPLPN 227
G VFS+ + L +L G+AA+LRF +
Sbjct: 319 GKVVVFSTAFEPGEKLHKLGGIAALLRFKVTG 350
>sp|Q2FQH4|PELO_METHJ Protein pelota homolog OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=pelA PE=3 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 16 VKMIPVDSDDLWFAYNLVAGKDPFLAITLRKV 47
+++ P +SDDLW +NL+ A TLR V
Sbjct: 15 IRLFPENSDDLWHLHNLITPGSLVYATTLRSV 46
>sp|Q5H1F3|LPXB_XANOR Lipid-A-disaccharide synthase OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=lpxB PE=3 SV=1
Length = 432
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 213 QLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGC 249
+L G+ + R+ LPN+ ND + + M+++ +PE+ C
Sbjct: 343 KLLGLIKVNRYALPNILANDDLAPELMQDDCMPERLC 379
>sp|Q2P4B8|LPXB_XANOM Lipid-A-disaccharide synthase OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=lpxB PE=3 SV=1
Length = 432
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 213 QLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGC 249
+L G+ + R+ LPN+ ND + + M+++ +PE+ C
Sbjct: 343 KLLGLIKVNRYALPNILANDDLAPELMQDDCMPERLC 379
>sp|Q9K716|GPMI_BACHD 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125) GN=gpmI PE=3 SV=1
Length = 510
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 126 HLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK 185
H LL+A+ + + + EV H+ + R+ Q+L + R +
Sbjct: 42 HALLKAD-----GEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNLSIREGEFFENET 96
Query: 186 YVDLVNSVKDSGGTAHVFSSMSQGNL 211
+++ +N VK+ G + H++ +S G +
Sbjct: 97 FLNAMNHVKEKGSSLHIYGLVSDGGI 122
>sp|Q6HBF2|GPMI_BACHK 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=gpmI PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ Q+L + R + + + SVK+ G H+F +S G +
Sbjct: 62 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 121
Query: 212 -GQLTGVAAILRF 223
+ + A+LR
Sbjct: 122 HSHMNHMFALLRL 134
>sp|Q631M1|GPMI_BACCZ 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus cereus (strain ZK / E33L) GN=gpmI PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ Q+L + R + + + SVK+ G H+F +S G +
Sbjct: 62 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 121
Query: 212 -GQLTGVAAILRF 223
+ + A+LR
Sbjct: 122 HSHMNHMFALLRL 134
>sp|Q815K7|GPMI_BACCR 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmI
PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ Q+L + R + + + SVK+ G H+F +S G +
Sbjct: 62 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 121
Query: 212 -GQLTGVAAILRF 223
+ + A+LR
Sbjct: 122 HSHMNHMFALLRL 134
>sp|Q72XY4|GPMI_BACC1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus cereus (strain ATCC 10987) GN=gpmI PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ Q+L + R + + + SVK+ G H+F +S G +
Sbjct: 62 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 121
Query: 212 -GQLTGVAAILRF 223
+ + A+LR
Sbjct: 122 HSHMNHMFALLRL 134
>sp|A0RKS4|GPMI_BACAH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3
SV=1
Length = 509
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNL 211
EV H+ + R+ Q+L + R + + + SVK+ G H+F +S G +
Sbjct: 62 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 121
Query: 212 -GQLTGVAAILRF 223
+ + A+LR
Sbjct: 122 HSHMNHMFALLRL 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,594,350
Number of Sequences: 539616
Number of extensions: 3802787
Number of successful extensions: 8255
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 8176
Number of HSP's gapped (non-prelim): 92
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)