Query 048626
Match_columns 260
No_of_seqs 143 out of 504
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2869 Meiotic cell division 100.0 1.2E-65 2.5E-70 471.1 22.2 230 1-233 1-378 (379)
2 TIGR00111 pelota probable tran 100.0 1.4E-58 3.1E-63 435.5 25.3 212 1-225 1-351 (351)
3 COG1537 PelA Predicted RNA-bin 100.0 6.7E-58 1.5E-62 425.2 23.4 217 1-226 1-352 (352)
4 TIGR00108 eRF peptide chain re 100.0 1.4E-29 2.9E-34 243.2 5.6 134 91-226 192-408 (409)
5 PRK04011 peptide chain release 100.0 8E-28 1.7E-32 231.1 15.3 133 91-225 196-411 (411)
6 TIGR03676 aRF1/eRF1 peptide ch 99.9 6.7E-27 1.4E-31 224.2 14.8 133 91-225 188-403 (403)
7 PF03465 eRF1_3: eRF1 domain 3 99.8 5.9E-21 1.3E-25 153.7 8.2 72 153-225 26-113 (113)
8 PF03463 eRF1_1: eRF1 domain 1 99.8 1.5E-21 3.3E-26 160.8 1.3 80 1-83 1-81 (132)
9 COG1503 eRF1 Peptide chain rel 99.8 5.5E-19 1.2E-23 168.4 11.6 134 91-226 195-410 (411)
10 PF03464 eRF1_2: eRF1 domain 2 99.0 3.8E-10 8.2E-15 92.8 6.1 56 91-146 54-133 (133)
11 KOG0688 Peptide chain release 99.0 2E-10 4.3E-15 107.0 4.5 134 91-226 196-413 (431)
12 PF08032 SpoU_sub_bind: RNA 2' 94.3 0.054 1.2E-06 39.4 3.6 63 155-224 7-73 (76)
13 PRK13600 putative ribosomal pr 71.0 5.6 0.00012 30.6 3.4 50 150-206 15-64 (84)
14 PF13727 CoA_binding_3: CoA-bi 66.3 11 0.00025 30.5 4.7 44 155-204 132-175 (175)
15 TIGR01166 cbiO cobalt transpor 63.8 16 0.00034 30.8 5.2 50 155-206 137-186 (190)
16 cd03216 ABC_Carb_Monos_I This 59.5 22 0.00049 29.4 5.3 50 155-206 92-141 (163)
17 PRK10124 putative UDP-glucose 59.2 33 0.00071 33.9 7.2 107 109-225 143-263 (463)
18 PRK13538 cytochrome c biogenes 57.7 24 0.00051 30.2 5.3 50 155-206 139-188 (204)
19 TIGR02673 FtsE cell division A 56.9 25 0.00054 30.1 5.3 50 155-206 147-196 (214)
20 PF10116 Host_attach: Protein 56.9 19 0.00042 29.3 4.4 41 91-131 73-114 (138)
21 COG0420 SbcD DNA repair exonuc 56.7 31 0.00066 32.8 6.3 52 155-206 31-84 (390)
22 cd03235 ABC_Metallic_Cations A 56.6 25 0.00054 30.1 5.3 50 155-206 142-191 (213)
23 cd03230 ABC_DR_subfamily_A Thi 56.1 29 0.00063 28.9 5.4 50 155-206 105-154 (173)
24 TIGR00960 3a0501s02 Type II (G 55.9 27 0.00058 30.0 5.3 50 155-206 148-197 (216)
25 cd03232 ABC_PDR_domain2 The pl 55.8 27 0.00058 29.7 5.3 50 155-206 118-167 (192)
26 cd03246 ABCC_Protease_Secretio 55.7 27 0.00059 29.1 5.2 50 155-206 106-155 (173)
27 cd03243 ABC_MutS_homologs The 55.2 58 0.0013 27.8 7.3 58 149-206 92-150 (202)
28 PRK09493 glnQ glutamine ABC tr 55.1 28 0.0006 30.5 5.4 50 155-206 146-195 (240)
29 TIGR03771 anch_rpt_ABC anchore 54.8 27 0.00059 30.4 5.3 50 155-206 123-172 (223)
30 cd03283 ABC_MutS-like MutS-lik 54.8 66 0.0014 27.9 7.6 68 150-217 88-160 (199)
31 cd03226 ABC_cobalt_CbiO_domain 54.6 29 0.00063 29.6 5.3 50 155-206 136-185 (205)
32 cd03292 ABC_FtsE_transporter F 54.6 29 0.00062 29.7 5.3 50 155-206 146-195 (214)
33 cd03262 ABC_HisP_GlnQ_permease 54.3 29 0.00064 29.6 5.3 50 155-206 145-194 (213)
34 PRK10908 cell division protein 54.3 29 0.00064 29.9 5.4 50 155-206 147-196 (222)
35 TIGR02324 CP_lyasePhnL phospho 53.6 30 0.00065 29.9 5.3 50 155-206 159-208 (224)
36 cd03269 ABC_putative_ATPase Th 53.5 32 0.0007 29.4 5.4 50 155-206 138-187 (210)
37 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 53.5 30 0.00065 30.2 5.3 50 155-206 152-201 (224)
38 cd03213 ABCG_EPDR ABCG transpo 53.5 31 0.00067 29.4 5.3 50 155-206 121-170 (194)
39 TIGR01978 sufC FeS assembly AT 53.1 29 0.00062 30.3 5.1 50 155-206 154-203 (243)
40 cd03280 ABC_MutS2 MutS2 homolo 52.8 77 0.0017 27.1 7.7 59 148-206 91-150 (200)
41 PRK13543 cytochrome c biogenes 52.6 32 0.00069 29.7 5.3 50 155-206 147-196 (214)
42 PRK13540 cytochrome c biogenes 52.0 34 0.00073 29.2 5.3 50 155-206 137-186 (200)
43 cd03270 ABC_UvrA_I The excisio 51.7 30 0.00065 30.4 5.1 52 155-206 147-198 (226)
44 PRK11124 artP arginine transpo 51.6 34 0.00073 30.0 5.4 50 155-206 151-200 (242)
45 cd03224 ABC_TM1139_LivF_branch 51.5 35 0.00075 29.3 5.4 50 155-206 142-191 (222)
46 PRK11264 putative amino-acid A 51.4 33 0.00071 30.2 5.3 50 155-206 154-203 (250)
47 TIGR03025 EPS_sugtrans exopoly 51.4 50 0.0011 32.0 7.0 106 109-220 125-243 (445)
48 CHL00131 ycf16 sulfate ABC tra 51.3 33 0.00072 30.1 5.3 50 155-206 161-210 (252)
49 cd03266 ABC_NatA_sodium_export 51.2 36 0.00079 29.1 5.4 50 155-206 146-195 (218)
50 cd03238 ABC_UvrA The excision 51.2 35 0.00077 29.2 5.3 52 155-206 97-148 (176)
51 PRK01018 50S ribosomal protein 51.2 84 0.0018 24.4 7.0 67 148-221 16-87 (99)
52 TIGR01189 ccmA heme ABC export 51.2 35 0.00075 29.0 5.2 50 155-206 137-186 (198)
53 PF11608 Limkain-b1: Limkain b 50.8 52 0.0011 25.7 5.5 49 167-228 3-51 (90)
54 cd03215 ABC_Carb_Monos_II This 50.8 39 0.00084 28.4 5.4 50 155-206 114-163 (182)
55 cd03219 ABC_Mj1267_LivG_branch 50.7 36 0.00078 29.6 5.4 50 155-206 153-202 (236)
56 TIGR03608 L_ocin_972_ABC putat 50.5 36 0.00079 28.8 5.3 50 155-206 144-193 (206)
57 cd03225 ABC_cobalt_CbiO_domain 50.4 37 0.00079 29.0 5.3 50 155-206 144-193 (211)
58 cd03282 ABC_MSH4_euk MutS4 hom 50.1 1.3E+02 0.0029 26.2 8.8 71 147-217 90-163 (204)
59 PRK10619 histidine/lysine/argi 49.9 36 0.00078 30.2 5.3 50 155-206 162-211 (257)
60 PRK11614 livF leucine/isoleuci 48.9 38 0.00083 29.5 5.3 50 155-206 147-196 (237)
61 cd03297 ABC_ModC_molybdenum_tr 48.7 37 0.0008 29.1 5.1 50 155-206 141-191 (214)
62 PRK09580 sufC cysteine desulfu 48.6 39 0.00084 29.6 5.3 50 155-206 155-204 (248)
63 TIGR03023 WcaJ_sugtrans Undeca 48.5 60 0.0013 31.5 7.0 105 110-220 129-246 (451)
64 PF13167 GTP-bdg_N: GTP-bindin 48.3 36 0.00079 26.6 4.5 65 150-214 10-75 (95)
65 cd03218 ABC_YhbG The ABC trans 48.3 41 0.00089 29.1 5.3 50 155-206 143-192 (232)
66 cd03286 ABC_MSH6_euk MutS6 hom 48.3 95 0.002 27.5 7.7 72 147-218 91-166 (218)
67 cd03214 ABC_Iron-Siderophores_ 47.9 41 0.00088 28.2 5.1 50 155-206 107-157 (180)
68 PRK13539 cytochrome c biogenes 47.9 42 0.00092 28.8 5.3 50 155-206 137-186 (207)
69 TIGR01188 drrA daunorubicin re 47.7 40 0.00087 30.9 5.4 50 155-206 134-183 (302)
70 cd03234 ABCG_White The White s 47.7 41 0.00089 29.1 5.3 50 155-206 153-202 (226)
71 COG1121 ZnuC ABC-type Mn/Zn tr 47.6 40 0.00088 31.0 5.3 66 156-223 150-215 (254)
72 PRK10895 lipopolysaccharide AB 47.4 41 0.0009 29.4 5.3 50 155-206 147-196 (241)
73 cd03268 ABC_BcrA_bacitracin_re 47.2 46 0.001 28.3 5.4 50 155-206 136-185 (208)
74 cd03300 ABC_PotA_N PotA is an 47.2 40 0.00087 29.4 5.1 50 155-206 140-190 (232)
75 cd03231 ABC_CcmA_heme_exporter 47.2 45 0.00097 28.5 5.3 50 155-206 135-184 (201)
76 PRK03695 vitamin B12-transport 47.2 42 0.0009 29.8 5.3 40 167-206 153-192 (248)
77 PRK13541 cytochrome c biogenes 47.1 45 0.00097 28.3 5.3 50 155-206 133-182 (195)
78 PRK10584 putative ABC transpor 47.1 41 0.00088 29.1 5.1 50 155-206 156-206 (228)
79 PRK15056 manganese/iron transp 47.0 42 0.0009 30.2 5.3 50 155-206 152-201 (272)
80 PRK13651 cobalt transporter AT 47.0 38 0.00083 31.4 5.2 50 155-206 175-224 (305)
81 cd03257 ABC_NikE_OppD_transpor 46.9 42 0.00091 28.9 5.2 50 155-206 155-205 (228)
82 TIGR03873 F420-0_ABC_ATP propo 46.6 43 0.00092 29.7 5.3 50 155-206 147-196 (256)
83 TIGR03740 galliderm_ABC gallid 46.3 48 0.001 28.6 5.4 50 155-206 134-183 (223)
84 PRK05800 cobU adenosylcobinami 46.3 1.1E+02 0.0024 25.9 7.5 96 111-206 4-125 (170)
85 cd03265 ABC_DrrA DrrA is the A 46.3 45 0.00097 28.7 5.2 50 155-206 141-191 (220)
86 PRK11231 fecE iron-dicitrate t 45.9 45 0.00096 29.6 5.3 50 155-206 148-197 (255)
87 PRK11300 livG leucine/isoleuci 45.9 44 0.00096 29.4 5.2 50 155-206 163-213 (255)
88 cd03255 ABC_MJ0796_Lo1CDE_FtsE 45.8 47 0.001 28.4 5.3 50 155-206 150-200 (218)
89 cd00544 CobU Adenosylcobinamid 45.8 1.7E+02 0.0038 24.7 8.7 93 112-206 3-125 (169)
90 PRK11629 lolD lipoprotein tran 45.7 45 0.00098 29.1 5.2 50 155-206 155-205 (233)
91 cd03229 ABC_Class3 This class 45.7 48 0.001 27.7 5.2 50 155-206 110-160 (178)
92 cd03227 ABC_Class2 ABC-type Cl 45.3 84 0.0018 25.9 6.6 52 155-206 87-140 (162)
93 cd03287 ABC_MSH3_euk MutS3 hom 45.3 1.4E+02 0.0031 26.5 8.4 61 146-206 91-153 (222)
94 TIGR01223 Pmev_kin_anim phosph 45.2 1.5E+02 0.0033 26.1 8.2 64 110-173 27-99 (182)
95 PRK10575 iron-hydroxamate tran 45.0 44 0.00096 29.9 5.2 50 155-206 157-207 (265)
96 PRK13644 cbiO cobalt transport 45.0 45 0.00097 30.1 5.2 50 155-206 146-195 (274)
97 cd03258 ABC_MetN_methionine_tr 44.8 46 0.001 28.9 5.1 50 155-206 150-200 (233)
98 cd03261 ABC_Org_Solvent_Resist 44.8 45 0.00097 29.0 5.1 50 155-206 146-196 (235)
99 TIGR01288 nodI ATP-binding ABC 44.8 48 0.001 30.4 5.4 50 155-206 145-194 (303)
100 PRK07283 hypothetical protein; 44.7 1.2E+02 0.0026 23.5 6.9 60 155-221 25-86 (98)
101 cd03293 ABC_NrtD_SsuB_transpor 44.6 52 0.0011 28.3 5.4 50 155-206 141-191 (220)
102 PRK13649 cbiO cobalt transport 44.3 46 0.001 29.9 5.2 50 155-206 155-204 (280)
103 cd03217 ABC_FeS_Assembly ABC-t 44.2 53 0.0012 28.0 5.3 50 155-206 114-163 (200)
104 PRK13639 cbiO cobalt transport 44.2 47 0.001 30.0 5.2 50 155-206 147-196 (275)
105 cd03296 ABC_CysA_sulfate_impor 44.2 47 0.001 29.1 5.1 50 155-206 146-196 (239)
106 PRK13638 cbiO cobalt transport 43.8 49 0.0011 29.7 5.3 50 155-206 146-195 (271)
107 PRK13643 cbiO cobalt transport 43.8 48 0.001 30.2 5.2 50 155-206 154-203 (288)
108 TIGR01277 thiQ thiamine ABC tr 43.4 53 0.0011 28.2 5.2 50 155-206 138-188 (213)
109 PRK13537 nodulation ABC transp 43.1 52 0.0011 30.4 5.4 50 155-206 148-197 (306)
110 cd03301 ABC_MalK_N The N-termi 43.0 52 0.0011 28.1 5.1 50 155-206 140-190 (213)
111 PRK13548 hmuV hemin importer A 43.0 51 0.0011 29.4 5.2 40 167-206 160-200 (258)
112 cd03253 ABCC_ATM1_transporter 42.9 47 0.001 28.8 4.9 49 155-206 147-195 (236)
113 TIGR02323 CP_lyasePhnK phospho 42.9 51 0.0011 29.0 5.2 50 155-206 158-208 (253)
114 PF01248 Ribosomal_L7Ae: Ribos 42.7 93 0.002 23.3 5.9 67 149-222 16-87 (95)
115 cd03259 ABC_Carb_Solutes_like 42.7 53 0.0011 28.1 5.1 50 155-206 140-190 (213)
116 cd00267 ABC_ATPase ABC (ATP-bi 42.6 64 0.0014 26.2 5.4 50 155-206 90-139 (157)
117 PRK11181 23S rRNA (guanosine-2 42.5 76 0.0016 28.6 6.3 62 155-223 10-76 (244)
118 PRK13602 putative ribosomal pr 42.4 1.4E+02 0.0031 22.4 6.8 56 149-211 12-69 (82)
119 TIGR03410 urea_trans_UrtE urea 42.3 56 0.0012 28.3 5.3 50 155-206 141-191 (230)
120 PRK13635 cbiO cobalt transport 42.2 52 0.0011 29.9 5.2 50 155-206 150-200 (279)
121 PRK13647 cbiO cobalt transport 42.1 55 0.0012 29.6 5.3 50 155-206 148-197 (274)
122 cd03247 ABCC_cytochrome_bd The 41.9 52 0.0011 27.4 4.8 49 155-206 108-156 (178)
123 PRK07714 hypothetical protein; 41.9 1.3E+02 0.0029 23.2 6.8 60 155-221 25-87 (100)
124 PRK13547 hmuV hemin importer A 41.5 52 0.0011 29.9 5.1 41 166-206 173-214 (272)
125 cd03290 ABCC_SUR1_N The SUR do 41.5 55 0.0012 28.1 5.1 50 155-206 150-201 (218)
126 PRK10247 putative ABC transpor 41.4 55 0.0012 28.4 5.1 50 155-206 147-197 (225)
127 cd03298 ABC_ThiQ_thiamine_tran 41.2 58 0.0013 27.8 5.1 50 155-206 138-188 (211)
128 PRK11248 tauB taurine transpor 41.1 58 0.0013 29.1 5.3 50 155-206 138-188 (255)
129 PRK11288 araG L-arabinose tran 40.8 55 0.0012 32.2 5.5 50 155-206 406-455 (501)
130 PRK06683 hypothetical protein; 40.7 1.6E+02 0.0034 22.2 6.8 51 149-206 12-62 (82)
131 PRK13641 cbiO cobalt transport 40.6 59 0.0013 29.6 5.3 50 155-206 155-204 (287)
132 TIGR01184 ntrCD nitrate transp 40.3 61 0.0013 28.3 5.2 50 155-206 124-174 (230)
133 smart00534 MUTSac ATPase domai 40.2 1.6E+02 0.0034 24.9 7.6 59 148-206 61-121 (185)
134 PRK14250 phosphate ABC transpo 40.2 57 0.0012 28.7 5.0 50 155-206 141-191 (241)
135 PTZ00106 60S ribosomal protein 39.9 1.7E+02 0.0037 23.2 7.2 60 155-221 32-96 (108)
136 PF00488 MutS_V: MutS domain V 39.9 1.3E+02 0.0029 26.8 7.4 61 146-206 103-165 (235)
137 PRK13646 cbiO cobalt transport 39.6 80 0.0017 28.7 6.0 50 155-206 155-205 (286)
138 PRK13549 xylose transporter AT 39.6 58 0.0013 32.1 5.5 50 155-206 415-464 (506)
139 PRK13536 nodulation factor exp 39.6 62 0.0013 30.6 5.4 50 155-206 182-231 (340)
140 cd03222 ABC_RNaseL_inhibitor T 39.5 68 0.0015 27.4 5.2 50 155-206 81-131 (177)
141 PRK13642 cbiO cobalt transport 39.4 59 0.0013 29.3 5.1 50 155-206 150-200 (277)
142 cd03236 ABC_RNaseL_inhibitor_d 39.4 95 0.0021 28.0 6.4 50 155-206 149-198 (255)
143 PRK11831 putative ABC transpor 39.4 61 0.0013 29.1 5.1 50 155-206 153-203 (269)
144 PRK13546 teichoic acids export 39.1 65 0.0014 29.1 5.3 50 155-206 153-202 (264)
145 PRK15112 antimicrobial peptide 39.1 60 0.0013 29.1 5.1 50 155-206 159-209 (267)
146 TIGR00968 3a0106s01 sulfate AB 38.9 64 0.0014 28.3 5.1 50 155-206 140-190 (237)
147 cd03256 ABC_PhnC_transporter A 38.7 63 0.0014 28.1 5.0 50 155-206 154-204 (241)
148 PRK10771 thiQ thiamine transpo 38.7 64 0.0014 28.0 5.1 50 155-206 139-189 (232)
149 PRK00635 excinuclease ABC subu 38.7 2.2E+02 0.0048 33.4 10.3 52 155-206 486-537 (1809)
150 cd03279 ABC_sbcCD SbcCD and ot 38.5 69 0.0015 27.7 5.2 40 167-206 153-192 (213)
151 PRK10982 galactose/methyl gala 38.2 62 0.0013 31.7 5.4 50 155-206 401-450 (491)
152 TIGR02770 nickel_nikD nickel i 38.0 66 0.0014 28.0 5.0 50 155-206 135-185 (230)
153 cd03369 ABCC_NFT1 Domain 2 of 37.7 65 0.0014 27.4 4.9 49 155-206 135-183 (207)
154 PRK13637 cbiO cobalt transport 37.7 65 0.0014 29.3 5.1 50 155-206 154-204 (287)
155 TIGR00186 rRNA_methyl_3 rRNA m 37.5 96 0.0021 27.7 6.1 61 155-224 9-72 (237)
156 cd03249 ABC_MTABC3_MDL1_MDL2 M 37.5 65 0.0014 28.0 4.9 49 155-206 149-197 (238)
157 cd03240 ABC_Rad50 The catalyti 37.4 68 0.0015 27.7 5.0 41 166-206 140-182 (204)
158 TIGR02633 xylG D-xylose ABC tr 37.3 66 0.0014 31.5 5.4 50 155-206 413-462 (500)
159 PRK13652 cbiO cobalt transport 37.2 68 0.0015 29.0 5.1 50 155-206 147-197 (277)
160 PRK14247 phosphate ABC transpo 37.2 71 0.0015 28.1 5.2 49 155-206 156-204 (250)
161 cd03252 ABCC_Hemolysin The ABC 37.1 65 0.0014 28.0 4.9 49 155-206 148-196 (237)
162 PRK13650 cbiO cobalt transport 37.1 67 0.0015 29.1 5.1 50 155-206 150-200 (279)
163 PRK04148 hypothetical protein; 37.1 2E+02 0.0042 23.9 7.4 36 183-218 88-128 (134)
164 PRK15439 autoinducer 2 ABC tra 37.0 66 0.0014 31.8 5.4 50 155-206 413-462 (510)
165 PRK13634 cbiO cobalt transport 36.9 68 0.0015 29.2 5.1 50 155-206 155-205 (290)
166 COG3897 Predicted methyltransf 36.8 88 0.0019 28.2 5.5 69 161-238 139-211 (218)
167 PRK13631 cbiO cobalt transport 36.8 69 0.0015 29.9 5.2 50 155-206 186-235 (320)
168 PRK11701 phnK phosphonate C-P 36.8 71 0.0015 28.3 5.1 50 155-206 161-211 (258)
169 PRK11247 ssuB aliphatic sulfon 36.7 77 0.0017 28.5 5.4 50 155-206 143-193 (257)
170 PRK09700 D-allose transporter 36.4 70 0.0015 31.5 5.5 50 155-206 419-468 (510)
171 PRK10418 nikD nickel transport 36.4 71 0.0015 28.3 5.1 50 155-206 150-200 (254)
172 TIGR02211 LolD_lipo_ex lipopro 36.3 78 0.0017 27.1 5.2 50 155-206 151-201 (221)
173 TIGR02769 nickel_nikE nickel i 36.2 71 0.0015 28.5 5.1 50 155-206 160-210 (265)
174 PRK14244 phosphate ABC transpo 36.2 74 0.0016 28.0 5.1 49 155-206 159-207 (251)
175 PRK09984 phosphonate/organopho 36.1 72 0.0016 28.3 5.1 50 155-206 162-212 (262)
176 TIGR02315 ABC_phnC phosphonate 36.0 73 0.0016 27.7 5.0 50 155-206 155-205 (243)
177 PRK13648 cbiO cobalt transport 36.0 74 0.0016 28.5 5.1 50 155-206 152-202 (269)
178 PRK13636 cbiO cobalt transport 35.9 72 0.0016 28.9 5.1 50 155-206 151-201 (283)
179 COG1168 MalY Bifunctional PLP- 35.7 57 0.0012 31.9 4.5 111 91-206 64-198 (388)
180 PRK14240 phosphate transporter 35.7 1.1E+02 0.0023 26.9 6.1 49 155-206 156-204 (250)
181 TIGR02982 heterocyst_DevA ABC 35.6 85 0.0018 27.0 5.3 50 155-206 151-201 (220)
182 PRK15093 antimicrobial peptide 35.4 73 0.0016 29.8 5.2 50 155-206 168-218 (330)
183 cd03295 ABC_OpuCA_Osmoprotecti 35.4 76 0.0017 27.8 5.0 50 155-206 145-195 (242)
184 PRK10419 nikE nickel transport 35.2 74 0.0016 28.6 5.0 50 155-206 161-211 (268)
185 PRK09544 znuC high-affinity zi 35.2 78 0.0017 28.3 5.1 50 155-206 130-180 (251)
186 COG1131 CcmA ABC-type multidru 35.1 72 0.0016 29.4 5.0 50 155-206 146-195 (293)
187 cd03281 ABC_MSH5_euk MutS5 hom 35.1 1.7E+02 0.0036 25.6 7.1 60 147-206 90-153 (213)
188 cd03254 ABCC_Glucan_exporter_l 35.0 74 0.0016 27.4 4.8 49 155-206 149-197 (229)
189 COG1358 RPL8A Ribosomal protei 34.8 83 0.0018 25.5 4.7 53 148-206 27-79 (116)
190 PRK14266 phosphate ABC transpo 34.7 80 0.0017 27.7 5.1 49 155-206 156-204 (250)
191 PRK14245 phosphate ABC transpo 34.6 80 0.0017 27.8 5.1 49 155-206 156-204 (250)
192 TIGR03005 ectoine_ehuA ectoine 34.4 81 0.0018 27.8 5.1 50 155-206 156-206 (252)
193 cd03251 ABCC_MsbA MsbA is an e 34.3 78 0.0017 27.4 4.9 49 155-206 148-196 (234)
194 PRK14269 phosphate ABC transpo 34.3 82 0.0018 27.7 5.1 49 155-206 152-200 (246)
195 PRK00349 uvrA excinuclease ABC 34.1 1.8E+02 0.0039 31.8 8.4 52 155-206 499-550 (943)
196 PRK13645 cbiO cobalt transport 33.9 80 0.0017 28.6 5.1 50 155-206 160-210 (289)
197 TIGR03864 PQQ_ABC_ATP ABC tran 33.8 95 0.0021 27.0 5.4 50 155-206 142-192 (236)
198 PRK14251 phosphate ABC transpo 33.8 85 0.0019 27.6 5.1 49 155-206 157-205 (251)
199 cd03267 ABC_NatA_like Similar 33.7 94 0.002 27.2 5.3 50 155-206 163-213 (236)
200 PRK09473 oppD oligopeptide tra 33.6 79 0.0017 29.7 5.1 50 155-206 171-221 (330)
201 PRK13640 cbiO cobalt transport 33.6 82 0.0018 28.5 5.1 50 155-206 153-203 (282)
202 cd03233 ABC_PDR_domain1 The pl 33.6 93 0.002 26.6 5.2 50 155-206 128-178 (202)
203 PRK10744 pstB phosphate transp 33.5 87 0.0019 27.8 5.2 49 155-206 166-214 (260)
204 PRK14270 phosphate ABC transpo 33.5 86 0.0019 27.6 5.1 49 155-206 157-205 (251)
205 cd03294 ABC_Pro_Gly_Bertaine T 33.3 88 0.0019 28.1 5.2 50 155-206 170-220 (269)
206 PRK11308 dppF dipeptide transp 33.3 80 0.0017 29.6 5.1 50 155-206 164-214 (327)
207 PRK14268 phosphate ABC transpo 33.2 89 0.0019 27.7 5.2 49 155-206 164-212 (258)
208 PF03485 Arg_tRNA_synt_N: Argi 33.0 45 0.00098 24.7 2.7 25 95-119 55-81 (85)
209 PRK11022 dppD dipeptide transp 32.9 89 0.0019 29.2 5.3 50 155-206 163-213 (326)
210 PRK13632 cbiO cobalt transport 32.9 82 0.0018 28.3 4.9 50 155-206 152-202 (271)
211 PRK14273 phosphate ABC transpo 32.8 90 0.002 27.5 5.1 49 155-206 160-208 (254)
212 cd03264 ABC_drug_resistance_li 32.8 99 0.0022 26.3 5.2 49 155-206 140-188 (211)
213 PRK15079 oligopeptide ABC tran 32.8 84 0.0018 29.5 5.1 50 155-206 171-221 (331)
214 cd03228 ABCC_MRP_Like The MRP 32.5 92 0.002 25.8 4.9 49 155-206 106-154 (171)
215 PRK10762 D-ribose transporter 32.4 89 0.0019 30.7 5.5 50 155-206 405-454 (501)
216 PRK13633 cobalt transporter AT 32.2 89 0.0019 28.2 5.0 50 155-206 154-204 (280)
217 cd03275 ABC_SMC1_euk Eukaryoti 32.1 85 0.0018 27.8 4.8 40 167-206 179-218 (247)
218 PRK14259 phosphate ABC transpo 31.9 94 0.002 27.9 5.1 49 155-206 164-212 (269)
219 cd03271 ABC_UvrA_II The excisi 31.8 97 0.0021 28.3 5.2 52 155-206 179-231 (261)
220 cd03244 ABCC_MRP_domain2 Domai 31.6 89 0.0019 26.8 4.8 49 155-206 149-197 (221)
221 PRK14249 phosphate ABC transpo 31.5 99 0.0021 27.2 5.1 49 155-206 157-205 (251)
222 PRK14242 phosphate transporter 31.5 90 0.002 27.4 4.9 49 155-206 159-207 (253)
223 TIGR03411 urea_trans_UrtD urea 31.4 1E+02 0.0022 26.9 5.2 49 155-206 153-201 (242)
224 cd03245 ABCC_bacteriocin_expor 31.0 91 0.002 26.7 4.7 49 155-206 150-198 (220)
225 PRK14239 phosphate transporter 31.0 1E+02 0.0022 27.0 5.1 49 155-206 158-206 (252)
226 cd03250 ABCC_MRP_domain1 Domai 30.7 99 0.0021 26.2 4.9 50 155-206 137-187 (204)
227 PRK14238 phosphate transporter 30.6 1E+02 0.0022 27.8 5.1 49 155-206 177-225 (271)
228 PRK04175 rpl7ae 50S ribosomal 30.5 2.4E+02 0.0051 22.8 6.8 68 148-221 30-101 (122)
229 PRK10762 D-ribose transporter 30.4 97 0.0021 30.5 5.3 50 155-206 151-200 (501)
230 cd03299 ABC_ModC_like Archeal 30.1 1.1E+02 0.0024 26.7 5.2 50 155-206 139-189 (235)
231 PRK09700 D-allose transporter 30.1 1E+02 0.0022 30.4 5.4 50 155-206 155-204 (510)
232 PRK14236 phosphate transporter 30.1 1E+02 0.0023 27.6 5.1 49 155-206 178-226 (272)
233 PRK14261 phosphate ABC transpo 30.1 1E+02 0.0022 27.1 5.0 49 155-206 159-207 (253)
234 PRK10253 iron-enterobactin tra 30.1 1.1E+02 0.0023 27.4 5.1 50 155-206 153-203 (265)
235 PRK14274 phosphate ABC transpo 29.9 1.1E+02 0.0023 27.2 5.1 49 155-206 165-213 (259)
236 TIGR02314 ABC_MetN D-methionin 29.8 1E+02 0.0022 29.3 5.1 50 155-206 150-200 (343)
237 PRK10982 galactose/methyl gala 29.7 1E+02 0.0022 30.2 5.4 50 155-206 144-193 (491)
238 PRK14253 phosphate ABC transpo 29.5 1.1E+02 0.0024 26.8 5.1 49 155-206 155-203 (249)
239 cd03260 ABC_PstB_phosphate_tra 29.5 1.1E+02 0.0024 26.3 5.0 49 155-206 151-199 (227)
240 PRK14265 phosphate ABC transpo 29.3 1.1E+02 0.0024 27.6 5.1 49 155-206 171-219 (274)
241 TIGR00630 uvra excinuclease AB 29.2 2.7E+02 0.0059 30.3 8.7 52 155-206 497-548 (924)
242 PRK14262 phosphate ABC transpo 29.0 1.1E+02 0.0024 26.8 5.1 49 155-206 156-204 (250)
243 TIGR02633 xylG D-xylose ABC tr 28.9 1E+02 0.0022 30.3 5.1 50 155-206 151-200 (500)
244 cd03248 ABCC_TAP TAP, the Tran 28.7 1.1E+02 0.0024 26.3 4.9 49 155-206 160-208 (226)
245 COG0566 SpoU rRNA methylases [ 28.5 1.7E+02 0.0038 26.6 6.3 63 155-225 29-95 (260)
246 PRK14256 phosphate ABC transpo 28.5 1.1E+02 0.0025 26.8 5.0 49 155-206 158-206 (252)
247 PRK14272 phosphate ABC transpo 28.4 1.2E+02 0.0026 26.6 5.1 49 155-206 158-206 (252)
248 PRK11288 araG L-arabinose tran 28.4 1.1E+02 0.0024 30.0 5.4 50 155-206 150-199 (501)
249 TIGR03022 WbaP_sugtrans Undeca 28.3 2.1E+02 0.0047 27.7 7.3 104 110-220 126-244 (456)
250 PRK13545 tagH teichoic acids e 28.2 1.1E+02 0.0023 31.4 5.2 50 155-206 153-202 (549)
251 PRK14267 phosphate ABC transpo 28.2 1.2E+02 0.0027 26.6 5.2 49 155-206 159-207 (253)
252 cd03263 ABC_subfamily_A The AB 28.1 1.4E+02 0.003 25.5 5.4 49 155-206 143-191 (220)
253 PRK14235 phosphate transporter 27.9 1.2E+02 0.0025 27.2 5.0 49 155-206 173-221 (267)
254 PRK15439 autoinducer 2 ABC tra 27.5 1.2E+02 0.0025 30.1 5.3 50 155-206 150-199 (510)
255 PRK08939 primosomal protein Dn 27.4 4.6E+02 0.0099 24.4 9.0 46 167-212 219-266 (306)
256 PRK14237 phosphate transporter 27.4 1.2E+02 0.0027 27.0 5.1 49 155-206 173-221 (267)
257 PF07045 DUF1330: Protein of u 27.4 1.3E+02 0.0027 21.3 4.2 34 189-225 11-48 (65)
258 cd03237 ABC_RNaseL_inhibitor_d 27.1 1.3E+02 0.0028 26.9 5.1 50 155-206 125-175 (246)
259 TIGR02142 modC_ABC molybdenum 26.9 1.2E+02 0.0027 28.5 5.2 50 155-206 141-191 (354)
260 PRK14258 phosphate ABC transpo 26.6 1.3E+02 0.0029 26.7 5.1 50 155-206 160-210 (261)
261 TIGR01186 proV glycine betaine 26.5 1.8E+02 0.0038 27.9 6.2 50 155-206 139-189 (363)
262 PRK14263 phosphate ABC transpo 26.4 1.3E+02 0.0028 26.9 5.1 49 155-206 159-207 (261)
263 cd03239 ABC_SMC_head The struc 26.4 1.6E+02 0.0034 25.0 5.3 40 167-206 118-157 (178)
264 PRK10864 putative methyltransf 26.4 1.8E+02 0.004 27.9 6.2 62 155-224 116-182 (346)
265 PRK14241 phosphate transporter 26.4 1.4E+02 0.003 26.5 5.2 49 155-206 158-206 (258)
266 TIGR01187 potA spermidine/putr 26.4 1.3E+02 0.0028 28.0 5.2 50 155-206 110-160 (325)
267 PRK11153 metN DL-methionine tr 26.2 1.3E+02 0.0028 28.3 5.2 50 155-206 150-200 (343)
268 PRK14255 phosphate ABC transpo 26.0 1.5E+02 0.0032 26.1 5.2 49 155-206 158-206 (252)
269 PRK14271 phosphate ABC transpo 25.9 1.4E+02 0.003 27.0 5.2 49 155-206 173-221 (276)
270 cd03276 ABC_SMC6_euk Eukaryoti 25.8 2.3E+02 0.005 24.3 6.3 41 166-206 132-175 (198)
271 PRK14248 phosphate ABC transpo 25.7 1.3E+02 0.0029 26.7 5.0 49 155-206 174-222 (268)
272 PRK10938 putative molybdenum t 25.7 1.3E+02 0.0029 29.4 5.3 50 155-206 145-194 (490)
273 COG1129 MglA ABC-type sugar tr 25.5 1.2E+02 0.0025 30.8 4.9 59 165-223 419-485 (500)
274 TIGR03269 met_CoM_red_A2 methy 25.4 1.2E+02 0.0027 29.9 5.1 50 155-206 437-487 (520)
275 PF01408 GFO_IDH_MocA: Oxidore 25.3 2.2E+02 0.0048 21.5 5.6 41 155-202 78-118 (120)
276 PRK14246 phosphate ABC transpo 25.1 1.3E+02 0.0029 26.8 4.9 49 155-206 163-211 (257)
277 cd00338 Ser_Recombinase Serine 24.9 2.5E+02 0.0054 21.8 5.9 44 156-204 57-102 (137)
278 PRK13812 orotate phosphoribosy 24.9 1.4E+02 0.003 25.6 4.7 54 166-224 108-168 (176)
279 PF13671 AAA_33: AAA domain; P 24.7 3.3E+02 0.0072 21.0 7.1 44 155-206 62-105 (143)
280 PRK13601 putative L7Ae-like ri 24.6 3.1E+02 0.0068 20.7 6.6 50 155-211 15-66 (82)
281 PRK14243 phosphate transporter 24.5 1.5E+02 0.0032 26.5 5.1 49 155-206 161-209 (264)
282 TIGR03522 GldA_ABC_ATP gliding 24.5 1.4E+02 0.0031 27.3 5.0 49 155-206 143-191 (301)
283 PRK14275 phosphate ABC transpo 24.3 1.5E+02 0.0033 26.9 5.1 49 155-206 192-240 (286)
284 PRK10535 macrolide transporter 24.3 1.4E+02 0.0031 30.6 5.4 50 155-206 154-203 (648)
285 PRK14252 phosphate ABC transpo 24.2 1.6E+02 0.0034 26.2 5.2 49 155-206 171-219 (265)
286 PRK15134 microcin C ABC transp 24.0 1.4E+02 0.003 29.7 5.1 50 155-206 435-485 (529)
287 cd03288 ABCC_SUR2 The SUR doma 23.9 1.4E+02 0.0031 26.4 4.8 49 155-206 166-214 (257)
288 TIGR00288 conserved hypothetic 23.7 1.9E+02 0.0041 24.8 5.2 43 155-206 96-138 (160)
289 TIGR00972 3a0107s01c2 phosphat 23.5 1.6E+02 0.0035 25.7 5.0 49 155-206 154-202 (247)
290 PRK14260 phosphate ABC transpo 23.4 1.7E+02 0.0037 25.9 5.2 49 155-206 160-208 (259)
291 PRK10938 putative molybdenum t 23.4 1.3E+02 0.0029 29.3 4.9 50 155-206 411-461 (490)
292 PRK10259 hypothetical protein; 23.4 89 0.0019 24.1 2.9 34 187-222 53-86 (86)
293 PRK13549 xylose transporter AT 23.3 1.6E+02 0.0034 29.1 5.3 50 155-206 153-202 (506)
294 cd03284 ABC_MutS1 MutS1 homolo 23.2 4E+02 0.0087 23.2 7.4 60 147-206 91-152 (216)
295 cd03277 ABC_SMC5_euk Eukaryoti 23.2 1.5E+02 0.0032 25.9 4.7 40 167-206 150-191 (213)
296 COG3845 ABC-type uncharacteriz 23.1 2.3E+02 0.005 28.7 6.4 50 155-206 150-199 (501)
297 PRK10851 sulfate/thiosulfate t 22.8 1.7E+02 0.0036 27.8 5.2 50 155-206 146-196 (353)
298 PRK10261 glutathione transport 22.7 1.5E+02 0.0032 30.4 5.1 50 155-206 473-523 (623)
299 PRK11000 maltose/maltodextrin 22.5 1.5E+02 0.0034 28.1 5.0 50 155-206 143-193 (369)
300 PRK11144 modC molybdate transp 22.5 1.6E+02 0.0035 27.7 5.1 50 155-206 138-188 (352)
301 COG1129 MglA ABC-type sugar tr 22.4 2.7E+02 0.0058 28.3 6.8 50 155-206 155-204 (500)
302 TIGR03269 met_CoM_red_A2 methy 22.3 1.6E+02 0.0035 29.0 5.2 50 155-206 178-228 (520)
303 cd03278 ABC_SMC_barmotin Barmo 22.1 2.1E+02 0.0045 24.6 5.3 39 167-206 137-175 (197)
304 cd03273 ABC_SMC2_euk Eukaryoti 22.0 1.7E+02 0.0037 25.8 4.9 39 167-206 190-228 (251)
305 cd01473 vWA_CTRP CTRP for CS 21.6 1.5E+02 0.0033 25.4 4.3 48 167-217 112-161 (192)
306 PRK10070 glycine betaine trans 21.4 1.7E+02 0.0037 28.5 5.0 50 155-206 174-224 (400)
307 cd03274 ABC_SMC4_euk Eukaryoti 21.2 2E+02 0.0044 25.0 5.1 51 155-206 137-189 (212)
308 TIGR03258 PhnT 2-aminoethylpho 21.1 1.8E+02 0.004 27.7 5.2 41 166-206 156-198 (362)
309 TIGR03415 ABC_choXWV_ATP choli 21.0 1.8E+02 0.0039 28.1 5.1 50 155-206 174-224 (382)
310 PF00931 NB-ARC: NB-ARC domain 20.7 5.4E+02 0.012 22.5 7.9 72 155-237 93-166 (287)
311 COG1083 NeuA CMP-N-acetylneura 20.3 1.2E+02 0.0025 27.7 3.4 38 155-204 34-71 (228)
312 COG1116 TauB ABC-type nitrate/ 20.3 3.4E+02 0.0074 25.0 6.5 71 155-227 140-221 (248)
313 cd03289 ABCC_CFTR2 The CFTR su 20.1 1.8E+02 0.0039 26.5 4.7 49 155-206 148-196 (275)
314 PRK11650 ugpC glycerol-3-phosp 20.0 2E+02 0.0043 27.3 5.1 50 155-206 144-194 (356)
315 PRK05583 ribosomal protein L7A 20.0 4.4E+02 0.0095 20.7 6.7 60 155-221 24-86 (104)
316 PRK14254 phosphate ABC transpo 20.0 2.1E+02 0.0045 26.0 5.1 49 155-206 190-238 (285)
No 1
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-65 Score=471.14 Aligned_cols=230 Identities=47% Similarity=0.750 Sum_probs=222.4
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
||++++++.+||.|+|+++||++|||||+||||++||.|+|.|.|||+.+..+|+++++|++++|+|+ ||+++||+.
T Consensus 1 MKli~K~~~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~---VesidfD~~ 77 (379)
T KOG2869|consen 1 MKLIRKDIERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIK---VESIDFDTK 77 (379)
T ss_pred CccchhhhhcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEE---EEEeecccc
Confidence 99999999999999999999999999999999999999999999999999989988899999999999 999999999
Q ss_pred CCe-----eeccccH-----------------------------------------------------------------
Q 048626 81 GSI-----KNILENE----------------------------------------------------------------- 90 (260)
Q Consensus 81 ~~~-----~ni~e~~----------------------------------------------------------------- 90 (260)
++. +|+++|+
T Consensus 78 ~~~L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~t 157 (379)
T KOG2869|consen 78 ACVLRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSST 157 (379)
T ss_pred ccEEEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHH
Confidence 988 6666655
Q ss_pred --------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------
Q 048626 91 --------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------ 131 (260)
Q Consensus 91 --------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------ 131 (260)
+||++|.+++.+|++|+.++|+|| ||||+++.|++|+.++|
T Consensus 158 ilr~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk 237 (379)
T KOG2869|consen 158 ILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENK 237 (379)
T ss_pred HHHHhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcc
Confidence 999999999999999999999999 99999999999998776
Q ss_pred ----------------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCC
Q 048626 132 ----------------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL 174 (260)
Q Consensus 132 ----------------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l 174 (260)
+|+|++|++++.++++|+++|++ ||.+|+|+|||+||||||++
T Consensus 238 ~kf~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~l 317 (379)
T KOG2869|consen 238 SKFPLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDEL 317 (379)
T ss_pred cceeEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhh
Confidence 99999999999999999999999 99999999999999999999
Q ss_pred ccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCCcc
Q 048626 175 FRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKNDK 233 (260)
Q Consensus 175 ~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~~~ 233 (260)
||+.|+++|++|+.|++.|+.+||+|+|||+. +|+||.+|||||||||||+|+|||+|.
T Consensus 318 fr~~DV~tRkkyv~lvesVk~~~gkv~Ifss~H~SGEqL~qltGiaAiLrfp~pel~d~e~ 378 (379)
T KOG2869|consen 318 FRSQDVATRKKYVRLVESVKENNGKVFIFSSLHVSGEQLAQLTGIAAILRFPLPELDDSEG 378 (379)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCcEEEEehhhccHHHHHhhcCeeEEEecCCCccccccC
Confidence 99999999999999999999999999999999 999999999999999999999999875
No 2
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=100.00 E-value=1.4e-58 Score=435.45 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=194.9
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
|||++++. ++++|.|+|+||++||||||||||++||.|+|+|+|+|++++.+|+++ +|++++|+|+ ||+++|||+
T Consensus 1 Mki~~~~~-~~~~g~v~l~pe~~dDlw~l~nli~~GD~V~~~T~Rkv~~~~~~g~~~-er~~~~l~i~---Ve~ief~~~ 75 (351)
T TIGR00111 1 MSIVEESF-NKGGAVIKLLPETLDDLWHLYQIIEKGDVEFAFTKRRTQDLDKIRSDK-SKDTVKLGIE---VESVEFDMK 75 (351)
T ss_pred Cceeeeec-CCCcEEEEEEeCChHHHHHHHHhCCCCCEEEEEEEEEEeccccCCCcc-eEEEEEEEEE---EEEEEecCC
Confidence 99999997 777889999999999999999999999999999999999887788877 9999999999 999999999
Q ss_pred CCe-----eecccc-----------------H------------------------------------------------
Q 048626 81 GSI-----KNILEN-----------------E------------------------------------------------ 90 (260)
Q Consensus 81 ~~~-----~ni~e~-----------------~------------------------------------------------ 90 (260)
+++ +++.++ +
T Consensus 76 ~~~Lri~G~i~~~~e~~v~~G~~HTl~ie~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vv~d~g~A~i~ll~~~~ 155 (351)
T TIGR00111 76 TERLRYKGVIVTGPEDDVPVGSYHTLEIKYVYPLSIIKQNWKKWQLKRLREAVEISKRPKTAAVVMEEGIAHVGLVRQYS 155 (351)
T ss_pred CCEEEEEEEEecCCcccccccceEEEEEcCCCcEEEEEecCCHHHHHHHHHHhccccCCcEEEEEEeCCcEEEEEEcCCE
Confidence 988 333222 1
Q ss_pred -------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH-------------
Q 048626 91 -------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------- 131 (260)
Q Consensus 91 -------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------- 131 (260)
+||++|++++.+ ++++++||| ||||+|++|++||.+++
T Consensus 156 ~~~~~~i~~~iP~K~~~~~~e~~~~~Ff~~v~~~l~~---~~~v~~iIiaGPGf~k~~f~~~l~~~~~~~~~k~ii~~~s 232 (351)
T TIGR00111 156 VEEIQKIEYHMPGKKRTLKFGELRKEFYKEIAKKLLN---FDDLKTIIVAGPGFYKNDFYDFIFERYPEEANKAVLENCS 232 (351)
T ss_pred EEEEEEEEEeCCCCcccchhHHHHHHHHHHHHHHHhh---hcccCEEEEECCHHHHHHHHHHHHHHhhhhhCCcEEEecC
Confidence 799999999854 368999999 99999999999987554
Q ss_pred -------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhH
Q 048626 132 -------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATR 183 (260)
Q Consensus 132 -------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R 183 (260)
+|+|++|.++++++++++++|.+ ||.+|+++|||+||||||++|. .|
T Consensus 233 ~g~~~gl~EvL~~~~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~-----~r 307 (351)
T TIGR00111 233 TGGRAGINEVLKRGLVARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLV-----QR 307 (351)
T ss_pred CCchhHHHHHHhChHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhh-----hH
Confidence 99999999999999999999988 9999999999999999999982 47
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCC
Q 048626 184 KKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPL 225 (260)
Q Consensus 184 ~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi 225 (260)
+++++|++.|+++||+|+|||++ +|+||++|||||||||||+
T Consensus 308 ~~~~~l~~~v~~~gg~V~i~Ss~~e~G~qL~~lgGiaAiLRy~i 351 (351)
T TIGR00111 308 EEIEKLLDSVESMGGKVVILSTEHELGKQLDSLGGIAGILRFPI 351 (351)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccHHHHhhCCCEEEEEeccC
Confidence 78999999999999999999999 9999999999999999997
No 3
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=100.00 E-value=6.7e-58 Score=425.23 Aligned_cols=217 Identities=29% Similarity=0.452 Sum_probs=199.9
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
||++.++. ++|.|+|+||++||||||||+|++||.|+|+|+|+.++....++++++|++|+|+|+ |+++|||+|
T Consensus 1 M~ile~~~---k~g~I~l~pE~lDDLw~L~~Ii~~GD~v~a~T~Rr~~~~d~~r~~~~eri~m~L~Ik---Ve~ieF~~f 74 (352)
T COG1537 1 MRILEEDK---KRGVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGERIPMTLGIK---VEKIEFDKF 74 (352)
T ss_pred Ccceeccc---cCceEEEecCChHHHHHHHHhcCCCCEEEEEEEEecccccccccCcceEEEEEEEEE---EEEEEeeec
Confidence 99999997 689999999999999999999999999999999994333334477889999999999 999999999
Q ss_pred CCe---------------------eeccccH-------------------------------------------------
Q 048626 81 GSI---------------------KNILENE------------------------------------------------- 90 (260)
Q Consensus 81 ~~~---------------------~ni~e~~------------------------------------------------- 90 (260)
+++ +|++.|.
T Consensus 75 ~nrLRi~G~i~~~~e~~~~G~yHTi~v~~g~~i~I~K~~W~~~~lerLkeA~~~~~~~~~~~v~~degea~i~iv~~ygi 154 (352)
T COG1537 75 ANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEASKRPEVAIVVVDEGEAAIAIVRDYGI 154 (352)
T ss_pred ccEEEEEEEEEEcCcccccccceEEEeccCceEEEEEccCCHHHHHHHHHHhhcccCCceEEEEEecCceEEEEEeccce
Confidence 999 3332222
Q ss_pred ----------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH----------------
Q 048626 91 ----------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA---------------- 131 (260)
Q Consensus 91 ----------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~---------------- 131 (260)
+||..|++++.+++ +++.||| ||||+|++|++|+++..
T Consensus 155 ~~~~~i~~~~~gK~~~~~~~~~k~~~~i~~~~~~~~---~~~~iIvaGPGF~k~~~~~~~~~~~p~~~~~~~~~~s~~g~ 231 (352)
T COG1537 155 IILGKIRSGIPGKREGDIRAERKFFDEIAKALKEYA---NLDIIIVAGPGFAKEDFYDFLRERYPELANIVIEDTSTGGR 231 (352)
T ss_pred EEEEEEeccCCCCcccchhhHHHHHHHHHHHHHHhh---CCCeEEEeCCchHHHHHHHHHHHhcccccceEEEeccCcch
Confidence 89999999999987 6888999 99999999999998653
Q ss_pred ---HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHH
Q 048626 132 ---EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYV 187 (260)
Q Consensus 132 ---~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~ 187 (260)
+|+|+++++.++++++++++|.+ ||.+|++||||++|||+|+++|+++.+.|++++
T Consensus 232 ~gi~EvLkr~~v~ki~~e~ria~e~~~~e~fl~~iak~~~~v~YG~~eV~~A~e~GAve~LLv~De~lr~~~~~~re~~~ 311 (352)
T COG1537 232 AGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETLLVTDELLRSDDVEEREDVE 311 (352)
T ss_pred HHHHHHHhhhhHHhHhhhhHHHHHHHHHHHHHHHHhcCCCceeEcHHHHHHHHhcCcceeEEeehhhhcccchhhHHHHH
Confidence 99999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCC
Q 048626 188 DLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLP 226 (260)
Q Consensus 188 ~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~ 226 (260)
++++.|+++||+|+|||++ +|++|++|||||||||||++
T Consensus 312 ~ll~~ve~~ggkV~Ivs~~he~Ge~Lk~lGGiaaILRf~v~ 352 (352)
T COG1537 312 ELLEEVESMGGKVVIVSTEHEPGERLKALGGIAAILRFPVP 352 (352)
T ss_pred HHHHHHHHcCCeEEEEecCCcchHHHHhccCeEEEEEecCC
Confidence 9999999999999999999 99999999999999999986
No 4
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=99.96 E-value=1.4e-29 Score=243.17 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcc---ccCCccEEEE-cCcccHHHHHH--HHHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHV---DFNVVRCAEI-SPGFTENQCHL--HLLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~---~~~~~k~III-GPGf~k~~f~~--yl~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.++| +..++++||| ||||+|++|.+ ||..++ +|+|... .++|++
T Consensus 192 ~f~~~Vae~~~~~f~~~~~~~v~~IIlaGpg~~K~~f~~~~~l~~~l~~kvi~~vdvs~gg~~gl~E~l~~~--~~~L~~ 269 (409)
T TIGR00108 192 EFLKKVGEVANEAFLPNDDVKLKGIILGGPGHTKEEFAEGEYLHHELKKKVISTVDVSYTGEFGIRELIEKS--ADVLAE 269 (409)
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEeccHHHHHHhhhhhhHHHHhhhhEEEEEEcCCCcccCHHHHHHHH--HHHHHH
Confidence 89999999999996 2337999999 99999999998 887665 8999854 899999
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCC------ccCc---------------------
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL------FRNT--------------------- 178 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l------~r~~--------------------- 178 (260)
.++++|.+ +|.+|+++|||+||||+|+| +||+
T Consensus 270 ~k~~~E~~lle~F~~ei~~d~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c 349 (409)
T TIGR00108 270 VDYMREKKLVQRFLKELIQEDGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAIC 349 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccC
Confidence 99888877 99999999999999999999 4543
Q ss_pred -------chhhHHH-HHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCCC
Q 048626 179 -------AIATRKK-YVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPLP 226 (260)
Q Consensus 179 -------d~~~R~~-~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi~ 226 (260)
++..|++ +++|++.|++.||+|+|||+. +|+|| ++|||||||||||++
T Consensus 350 ~~~~~~~~~~~~~~~ve~L~e~a~~~Ga~V~iiS~~~eeG~ql~~~fGGIaAiLRy~i~ 408 (409)
T TIGR00108 350 PACGQEMDVVEERDLIEWLSELAENFGAKLEFISTESEEGAQLLTAFGGIGAILRYKPN 408 (409)
T ss_pred cccCccccchhhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHhCCCEEEEEecccC
Confidence 2334555 578999999999999999999 99999 999999999999985
No 5
>PRK04011 peptide chain release factor 1; Provisional
Probab=99.95 E-value=8e-28 Score=231.07 Aligned_cols=133 Identities=24% Similarity=0.281 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhccc---cCCccEEEE-cCcccHHHHHH--HHHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVD---FNVVRCAEI-SPGFTENQCHL--HLLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~---~~~~k~III-GPGf~k~~f~~--yl~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.++|. +.++++||| ||||+|++|.+ ||.++. +|+|++ +++.+++
T Consensus 196 ~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K~~f~~~~~L~~~l~~~vv~~~~~s~~~~~Gl~E~l~~--~~~~L~~ 273 (411)
T PRK04011 196 EFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTKEEFLEGDYLHYELKKKILGLFDVSYTGESGLRELVDK--ASDLLKE 273 (411)
T ss_pred HHHHHHHHHHHHHHhhhccccccEEEEECChhHHHHHhhhhhhhHHHHhheEEEEecCCCCccCHHHHHHH--HHHHHHH
Confidence 899999999999975 478999999 99999999999 998764 899986 5999999
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCCcc------Ccc--------------------
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFR------NTA-------------------- 179 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r------~~d-------------------- 179 (260)
.++++|.+ +|.+|+++|||+||||+|++++ |++
T Consensus 274 ~k~~~e~~lle~f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c 353 (411)
T PRK04011 274 QELVKEKKLMEEFFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTC 353 (411)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccC
Confidence 99988887 9999999999999999999976 443
Q ss_pred ---------hhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCC
Q 048626 180 ---------IATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPL 225 (260)
Q Consensus 180 ---------~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi 225 (260)
++.|+.+++|++.|+++||+|+|||++ +|+|| ++|||||||||||+
T Consensus 354 ~~~~~~~~~~~~~~~v~~l~e~a~~~g~~v~iis~~~e~G~qL~~~fGGIaAiLRy~i 411 (411)
T PRK04011 354 PKCGSELEIVEEEDIIEELSELAEQSGTKVEVISTDTEEGEQLLKAFGGIAAILRYKT 411 (411)
T ss_pred cccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCCCEEEEEecCC
Confidence 556788999999999999999999999 99999 99999999999996
No 6
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=99.94 E-value=6.7e-27 Score=224.19 Aligned_cols=133 Identities=26% Similarity=0.312 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccc---cCCccEEEE-cCcccHHHHHH--HHHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVD---FNVVRCAEI-SPGFTENQCHL--HLLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~---~~~~k~III-GPGf~k~~f~~--yl~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.++|. ..++++||| ||||+|++|.+ ||.++. +|++++ +.+++++
T Consensus 188 ~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg~~K~~f~~~~~L~~~l~~kvi~~vd~s~~~~~Gl~Evl~~--~~~~L~~ 265 (403)
T TIGR03676 188 EFYKRVGEAANEAFLPLKDKKLKGILIGGPGPTKEEFAEGDYLHHELKKKILGLFDVSYTGESGLRELVEK--AEDLLKD 265 (403)
T ss_pred HHHHHHHHHHHHHHhhcccccccEEEEeCCHHHHHHHhhhhhhhHHHHhhEEEEEecCCCCccCHHHHHHH--HHHHHHH
Confidence 899999999999863 225999999 99999999999 998764 899987 5999999
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCC------ccCc--------------------c
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL------FRNT--------------------A 179 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l------~r~~--------------------d 179 (260)
.++++|.+ +|.+|+++|||+||||+|+| +||+ +
T Consensus 266 ~k~~~E~~lle~f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~ 345 (403)
T TIGR03676 266 LELMKEKKLMERFFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEAC 345 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccC
Confidence 99998887 99999999999999999999 5554 1
Q ss_pred h---------hhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCC
Q 048626 180 I---------ATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPL 225 (260)
Q Consensus 180 ~---------~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi 225 (260)
+ +.|+.+++|++.|+++||+|+|||++ +|+|| ++|||||||||||+
T Consensus 346 ~~~~~~~~~~~~~~~ve~L~e~a~~~Ga~V~~iS~~~eeG~ql~~~fGGIaAiLRy~i 403 (403)
T TIGR03676 346 PKCGSELEIVEEEDIIEELSELAEESGAKVEIISTDTEEGEQLLKAFGGIAAILRYRV 403 (403)
T ss_pred cccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCCcEEEEEecCC
Confidence 1 24667889999999999999999999 99999 59999999999996
No 7
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=99.84 E-value=5.9e-21 Score=153.66 Aligned_cols=72 Identities=38% Similarity=0.582 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCccEEEEecCCccCcchhhHHH-------------HHHHHHHHHhcCCEEEEEcCC--chhcc-ccccc
Q 048626 153 VQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK-------------YVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTG 216 (260)
Q Consensus 153 ~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~-------------~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGG 216 (260)
.++|.+|+++|||+||||+|++++..+. .|.+ ++++++.|+++||+|+|||+. +|+|| ++|||
T Consensus 26 ~~eV~~Al~~GaV~~LlI~d~l~~~~~~-~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~gG 104 (113)
T PF03465_consen 26 IEEVKKALEMGAVETLLISDDLFRSRDV-ERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSEHEEGEQLLKGFGG 104 (113)
T ss_dssp HHHHHHHHHTT-EEEEEEEHHHHTESCH-HHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTTT
T ss_pred HHHHHHHHHhCCCcEEEEecccccccce-eccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCCc
Confidence 3399999999999999999999999888 6776 999999999999999999999 99999 99999
Q ss_pred EEEEeecCC
Q 048626 217 VAAILRFPL 225 (260)
Q Consensus 217 IAAILRypi 225 (260)
|||||||||
T Consensus 105 IaaiLRy~i 113 (113)
T PF03465_consen 105 IAAILRYPI 113 (113)
T ss_dssp EEEEESS--
T ss_pred EEEEEeccC
Confidence 999999996
No 8
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=99.82 E-value=1.5e-21 Score=160.76 Aligned_cols=80 Identities=34% Similarity=0.566 Sum_probs=73.0
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeec-cCCCCccceEEEEEEEEECCccceeeccc
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQ-TKSGGKDAEWVKLKSEIWWPSLSGKLYDK 79 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~-~~~g~~~~~r~~~~L~I~~~~Ve~vefd~ 79 (260)
|||+++++.++++|.|+++||+.||||||||||.+||.|+|.|+|+|+.+ +.+|++++++++++|+|+ |++++|||
T Consensus 1 Mki~~~~~~~~~~~~i~ll~e~~dDlw~L~~li~~gD~v~~~t~Rkv~~~~~~~~~~~~~~v~~~L~i~---ve~v~~~~ 77 (132)
T PF03463_consen 1 MKIISKDIEKNGKGLIKLLPEEKDDLWHLYNLIIPGDEVISKTTRKVQEASNIKGSKTRERVQIALTIK---VEKVEFDP 77 (132)
T ss_dssp -EEEEECHCHHHHHEEEEETTSHHHHHHHHHHEETTTEEEECCHCHHHHCTCESSHHHHHCEEEEEEEE---EEEEEEET
T ss_pred CccchhhhccccCceEEEcccccCCcEEEEEEEECCCEEEEEEEEeeeecccccCCcceEEEEEEEEEE---EEEeEecC
Confidence 99999998767899999999999999999999999999999999999543 456677889999999999 99999999
Q ss_pred CCCe
Q 048626 80 EGSI 83 (260)
Q Consensus 80 ~~~~ 83 (260)
+++.
T Consensus 78 ~~~~ 81 (132)
T PF03463_consen 78 ENGL 81 (132)
T ss_dssp TTTE
T ss_pred CCCE
Confidence 9988
No 9
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.5e-19 Score=168.38 Aligned_cols=134 Identities=23% Similarity=0.283 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhccc---cCCccEEEE-cCcccHHHHHH--HHHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVD---FNVVRCAEI-SPGFTENQCHL--HLLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~---~~~~k~III-GPGf~k~~f~~--yl~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
.||++|++++.++|. ..++++||| |||.+|++|++ ||+++. +|++... .+.+++
T Consensus 195 ~f~k~vge~A~e~f~~~~~~~~kgIilgGp~~tk~ef~e~~yL~~~lk~kv~~lvDv~y~~esg~~eli~~A--~d~L~~ 272 (411)
T COG1503 195 EFYKKVGEAASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYLHHELKKKVLGLVDVSYTGESGLRELIEKA--EDALKD 272 (411)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcceEeeCCcccchhhhcccccchHHHHHHHhhccccccccccHHHHHHHh--HHHHHh
Confidence 999999999999985 226899999 99999999999 877654 6666654 666666
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccC------c---------------------
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRN------T--------------------- 178 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~------~--------------------- 178 (260)
.++.+|.+ +|++|+++|||++|||++++-.. +
T Consensus 273 ~~~~~eK~l~e~f~~e~~~~~Gla~yG~~~vr~aL~~gaVd~llv~Edl~~~r~~~~c~~~~~e~~~t~~~~~~~~~~~~ 352 (411)
T COG1503 273 VDYVREKKLMEEFFKELAKDSGLAVYGEEEVREALEMGAVDTLLVSEDLEKERVTYKCPTCGYENLKSKREFEQKRFRCP 352 (411)
T ss_pred hhhhcchhHHHHHHHHhccCcceeecchHHHHHHHHhcccceEEeeccccccceeecCCCcchhhhhcccccccccccCc
Confidence 66666655 99999999999999999998621 1
Q ss_pred -------chhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCCC
Q 048626 179 -------AIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPLP 226 (260)
Q Consensus 179 -------d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi~ 226 (260)
.+..+..++++.+.+++.|++|.|||.+ .|.|+ ++|||+||||||++.
T Consensus 353 ~~~~e~~~v~~~d~vd~l~e~a~~~Ga~ve~is~~~~eg~q~~~afgGi~AiLR~~~~ 410 (411)
T COG1503 353 ECGSEMEEVEVSDLVDELAELAEESGAKVEIISDDTDEGAQLLKAFGGLAAILRYRTD 410 (411)
T ss_pred cccccccchhhhhHHHHHHHHHHhcCCeEEEecCchHHHHHHHHcccchheeeecccC
Confidence 0223555889999999999999999998 88776 799999999999974
No 10
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=99.03 E-value=3.8e-10 Score=92.83 Aligned_cols=56 Identities=39% Similarity=0.610 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhc--cccCCccEEEE-cCcccHHHHHHHHHHHH---------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKH--VDFNVVRCAEI-SPGFTENQCHLHLLLEA---------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~--~~~~~~k~III-GPGf~k~~f~~yl~~~~---------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.++ +++.++++||| ||||+|++|++|+..++ +|+|++|+++++|+|
T Consensus 54 ~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~k~~f~~~l~~~~~~~~~~~i~~~~~s~~~~~gl~Evl~~~~v~~~l~d 133 (133)
T PF03464_consen 54 KFFKEIAEALKKYFLVNFDDVKCIIIAGPGFTKEEFYKYLKAEARRKDKKKIVVVDTSSGGESGLNEVLKRPEVQKILKD 133 (133)
T ss_dssp HHHHHHHHHHHHHCCCHTTTCSEEEEEESTTHHHHHHHHHHHHHHHHTCCEEEEEE-SSSCHHHHHHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhhccccccEEEEECCHHHHHHHHHHHHHhhHhhcCCEEEEEECCCCCHHHHHHHHHhhhHHHHhcC
Confidence 9999999999999 67999999999 99999999999987653 999999999998864
No 11
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2e-10 Score=106.98 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhccc---cCCccEEEE-cCcccHHHHHH------HHHHHH--------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVD---FNVVRCAEI-SPGFTENQCHL------HLLLEA--------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~---~~~~k~III-GPGf~k~~f~~------yl~~~~--------------~EvL~~~~v~~~l~~ 146 (260)
.|.+.+++.+.++|- ..++.++|+ |...+|.++.+ .|.... +.++.= ..+.+++
T Consensus 196 nYVrkvae~a~q~fi~~~~~Nv~gLilaGsadfKtelsqSd~fd~rlqskvi~~vdvsyGGengfnQaIeL--~aevlsn 273 (431)
T KOG0688|consen 196 NYVRKVAELAVQRFITNDKPNVAGLILAGSADFKTELSQSDMFDPRLQSKVLKTVDVSYGGENGFNQAIEL--SAEVLSN 273 (431)
T ss_pred cceeeecccceeEEecCCCcceeEEEEecccccccccchhhhcchHHhhhHHhhhcccccchhhHHHHHHH--HHhhhhc
Confidence 688899998888873 567889999 99988888766 222111 333331 2555566
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCCc------cCcc--------------------
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLF------RNTA-------------------- 179 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~------r~~d-------------------- 179 (260)
.++++|.+ +..+|+++|||+||++.+.|- ++.+
T Consensus 274 vk~vqekkli~~yfdEisqdtgky~Fgv~dTl~aLe~gavetli~~enLd~~ry~~kn~~~~~~i~~l~~~~e~d~s~~~ 353 (431)
T KOG0688|consen 274 VKFVQEKKLIGKYFDEISQDTGKYCFGVEDTLLALEMGAVETLIVWENLDIIRYELKNSDGESVIGFLVPDEEKDKSHFT 353 (431)
T ss_pred ceeeehhhHHHHHhhhhhcccCcccccHHHHHHHHHcCCeeehhHhhhhhhhhhhhcccCCccceeeecchhhccccccc
Confidence 66665555 999999999999999988874 1111
Q ss_pred ---------hhhH-HHHHHHHHHHHhcCCEEEEEcCC--ch-hcccccccEEEEeecCCC
Q 048626 180 ---------IATR-KKYVDLVNSVKDSGGTAHVFSSM--SQ-GNLGQLTGVAAILRFPLP 226 (260)
Q Consensus 180 ---------~~~R-~~~~~l~e~v~~~Gg~V~I~Ss~--~G-eqL~~lGGIAAILRypi~ 226 (260)
..++ -.++++.++.++.|+...|++.. .| +.+++||||.+||||+++
T Consensus 354 Dketg~e~elie~~pLlEw~AnnYK~FGa~LE~VTdKSqEgsQFv~GfGgiGgiLrY~vd 413 (431)
T KOG0688|consen 354 DKETGWEMELIERMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 413 (431)
T ss_pred ccccchhhhHHhhhhHHHHHHHHHhhcCeEEEEecccchhHHHHHhhcCCcceeEEEEee
Confidence 0112 22677999999999999999887 66 566999999999999986
No 12
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=94.35 E-value=0.054 Score=39.35 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHHHHHhcCC-ccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chhc--ccccccEEEEeecC
Q 048626 155 HVEVAHQRMA-VQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQGN--LGQLTGVAAILRFP 224 (260)
Q Consensus 155 eV~~A~e~GA-VetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Geq--L~~lGGIAAILRyp 224 (260)
.|..|++.|. |..|+++++ ... +++.++.+.+++.|..|+.+|.. -.+. -.+--||+|..+-+
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~-~~~------~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~~~~hQGv~a~v~~~ 73 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEE-KAD------KRIKEILKLAKKKGIPVYEVSKKVLDKLSDTENHQGVVAVVKPP 73 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT----------CCTHHHHHHHHHCT-EEEEE-HHHHHHCTTTSS-TTEEEEEE--
T ss_pred HHHHHHcCCCCccEEEEEcC-ccc------hhHHHHHHHHHHcCCeEEEeCHHHHHHHcCCCCCCeEEEEEeCC
Confidence 5888999987 999999998 322 12668999999999999999988 1111 24555999988643
No 13
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=71.02 E-value=5.6 Score=30.56 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 150 AQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 150 ~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
...++++.+|++.|-+..++|..|.- .+-+..+...+++.|-.+..++|.
T Consensus 15 vvG~kqt~Kai~kg~~~~v~iA~Da~-------~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 15 VVGLKETLKALKKDQVTSLIIAEDVE-------VYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred eeeHHHHHHHHhcCCceEEEEeCCCC-------HHHHHHHHHHHHHcCCCEEEECCH
Confidence 55666999999999999999998755 335678999999999999999998
No 14
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=66.33 E-value=11 Score=30.46 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEc
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFS 204 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~S 204 (260)
++.+.+..+.|+.++|+.... .++.+.++++.++++|.+|.++|
T Consensus 132 ~l~~~~~~~~id~v~ial~~~------~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 132 DLPELVREHDIDEVIIALPWS------EEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GHHHHHHHHT--EEEE--TTS-------HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHhCCCCEEEEEcCcc------CHHHHHHHHHHHHhCCCEEEEeC
Confidence 777788888999999997544 35678899999999999999987
No 15
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=63.83 E-value=16 Score=30.85 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 137 ~laral~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 137 AIAGAVAMRP--DVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 5555555444 7999999999999999999999888887778888888865
No 16
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=59.51 E-value=22 Score=29.44 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 92 ~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 92 EIARALARNA--RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHHHHhcCC--CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556666655 8999999999999999999999888776668888888887
No 17
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=59.16 E-value=33 Score=33.86 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=70.0
Q ss_pred ccEEEE-cCcccHHHHHHHHHHHH---HHH---hhhhHHHHHHHHHHH--HhHHHHHHHHHhcCCccEEEEecCCccCcc
Q 048626 109 VRCAEI-SPGFTENQCHLHLLLEA---EEV---LYASSVMNMIKDTKA--AQEVQHVEVAHQRMAVQTLHITDDLFRNTA 179 (260)
Q Consensus 109 ~k~III-GPGf~k~~f~~yl~~~~---~Ev---L~~~~v~~~l~~~k~--~~E~~eV~~A~e~GAVetLLIsD~l~r~~d 179 (260)
.+.++| |.|.....+.+.|.+.- .++ +.+... ..... .....++.+.+....|+.++|+-...
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~----~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~---- 214 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP----GGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMC---- 214 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc----ccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCc----
Confidence 345777 99999888887765431 111 111110 01111 12223667778888999999987544
Q ss_pred hhhHHHHHHHHHHHHhcCCEEEEEcCC-----chhcccccccEEEEeecCC
Q 048626 180 IATRKKYVDLVNSVKDSGGTAHVFSSM-----SQGNLGQLTGVAAILRFPL 225 (260)
Q Consensus 180 ~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-----~GeqL~~lGGIAAILRypi 225 (260)
.+.+..++++.+++.|.+|.++|+. ....+..+||+..+--.+-
T Consensus 215 --~~~~l~ell~~~~~~~v~V~ivP~l~~~~~~~~~~~~~~~~p~~~~~~~ 263 (463)
T PRK10124 215 --DGARVKKLVRQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDT 263 (463)
T ss_pred --chHHHHHHHHHHHHcCCeEEEecchhhccccccchhhcCCeeEEEEecc
Confidence 2456789999999999999999987 3346788999887654433
No 18
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=57.72 E-value=24 Score=30.22 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 139 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 139 ALARLWLTRA--PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4444444443 7999999999999999999999888776678888888877
No 19
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=56.91 E-value=25 Score=30.11 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..|..+.+++....+.|..|+++|.+
T Consensus 147 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 147 AIARAIVNSP--PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred HHHHHHhCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555544 8999999999999999999999888877778888888877
No 20
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=56.91 E-value=19 Score=29.29 Aligned_cols=41 Identities=15% Similarity=-0.011 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA 131 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~ 131 (260)
+|.++|++.+.+.......+.+|| +|.-+-..+.+.|....
T Consensus 73 ~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~LR~~L~~~~ 114 (138)
T PF10116_consen 73 RFAREVADRLEKARRAGKFDRLVLVAPPRFLGLLREHLSKAV 114 (138)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHhCHHH
Confidence 999999999999998888889999 88776666666555443
No 21
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=56.73 E-value=31 Score=32.83 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhH--HHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATR--KKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R--~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
++.+.+..-+||-+||+-++|.+.+|..+ ..+.+++......|-.|++++.+
T Consensus 31 ~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 31 ELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred HHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 66666777788999999999977766654 44667788888889999999988
No 22
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=56.61 E-value=25 Score=30.12 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 142 ~la~al~~~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 142 LLARALVQD--PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred HHHHHHHcC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 444555443 37999999999999999999998888876678888888887
No 23
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.08 E-value=29 Score=28.91 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 105 ~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 105 ALAQALLHDP--ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4555555554 8999999999999999999998888876668888888877
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=55.86 E-value=27 Score=30.00 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=41.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 148 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 148 AIARAIVHKP--PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred HHHHHHhcCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5555555554 7999999999999999999999888876678888888887
No 25
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.78 E-value=27 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 118 ~la~al~~~p--~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~ 167 (192)
T cd03232 118 TIGVELAAKP--SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167 (192)
T ss_pred HHHHHHhcCC--cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 4555555555 8999999999999999999999888877778888888877
No 26
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=55.67 E-value=27 Score=29.06 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..+.++|.+
T Consensus 106 ~la~al~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 106 GLARALYGNP--RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHHHHHhcCC--CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4444554444 7999999999999999999999888877678888888887
No 27
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=55.18 E-value=58 Score=27.84 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHH-HHHHHHHHhcCCEEEEEcCC
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKY-VDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~-~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
+..|++.+..++..---..++|.|+.+..-|+..+..+ ..+++...+.|..++++|..
T Consensus 92 ~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~ 150 (202)
T cd03243 92 FMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150 (202)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence 44455555555554445799999999999998877765 45778887888888888877
No 28
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=55.07 E-value=28 Score=30.50 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 146 ~la~al~~~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 146 AIARALAVK--PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred HHHHHHhcC--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 455555444 37999999999999999999999888877678888888888
No 29
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=54.80 E-value=27 Score=30.40 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 123 ~laral~~~p--~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 123 LVARALATRP--SVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5556666655 8999999999999999999999998887778889888887
No 30
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=54.79 E-value=66 Score=27.85 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHhcCC--ccEEEEecCCccCcchhhHHHH-HHHHHHHHhcCCEEEEEcCC--chhcccccccE
Q 048626 150 AQEVQHVEVAHQRMA--VQTLHITDDLFRNTAIATRKKY-VDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217 (260)
Q Consensus 150 ~~E~~eV~~A~e~GA--VetLLIsD~l~r~~d~~~R~~~-~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGI 217 (260)
..|.+.+.++++.-. =..|++.|+.++.-|+..+..+ ..+++...+.|..++++|.. .-..+...-.|
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v 160 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAV 160 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCe
Confidence 344445555555433 3589999999999998888765 45777777778888888887 33444433334
No 31
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=54.65 E-value=29 Score=29.56 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=40.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 136 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 136 AIAAALLSGK--DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred HHHHHHHhCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555443 7999999999999999999999888876678888888887
No 32
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=54.64 E-value=29 Score=29.66 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 146 ~laral~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 146 AIARAIVNSP--TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred HHHHHHHcCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555665554 7999999999999999999999888876678888888887
No 33
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=54.28 E-value=29 Score=29.56 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 145 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~ 194 (213)
T cd03262 145 AIARALAMNP--KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194 (213)
T ss_pred HHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555554 7999999999999999999999888877778888888877
No 34
>PRK10908 cell division protein FtsE; Provisional
Probab=54.25 E-value=29 Score=29.95 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|+.++++|.+
T Consensus 147 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (222)
T PRK10908 147 GIARAVVNKP--AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196 (222)
T ss_pred HHHHHHHcCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5555555554 7999999999999999999999888887778889888887
No 35
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=53.65 E-value=30 Score=29.88 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 159 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 159 NIARGFIADY--PILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555444 6999999999999999999999888887778888888887
No 36
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.53 E-value=32 Score=29.37 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 138 ~la~al~~~p--~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 138 QFIAAVIHDP--ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred HHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4555555554 7999999999999999999998888876678888888887
No 37
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=53.51 E-value=30 Score=30.21 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 152 ~laral~~~p--~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 152 AFAIATALEP--DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4555555444 7999999999999999999888888776668888888887
No 38
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=53.47 E-value=31 Score=29.39 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 121 ~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 121 SIALELVSNP--SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred HHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5555665555 6999999999999999999999888877778888888877
No 39
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=53.11 E-value=29 Score=30.29 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 154 ~la~al~~~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 154 EILQMALLE--PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred HHHHHHhcC--CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 444555444 37999999999999999999999888887778888888887
No 40
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=52.82 E-value=77 Score=27.06 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHH-HHHHHHHhcCCEEEEEcCC
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYV-DLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~-~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..+++....++..-.=-.+++.|+.++.-|+..+..+. .+++...+.|..+++++..
T Consensus 91 ~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 91 TFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred hHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 3444555444444332335799999999999999888874 5788877778888888777
No 41
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=52.64 E-value=32 Score=29.72 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
....|+-... .+|+.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 147 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 147 ALARLWLSPA--PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4445554444 6999999999999999999999888777778888888877
No 42
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=51.96 E-value=34 Score=29.16 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 137 ~laral~~~p--~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 137 ALLRLWMSKA--KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HHHHHHhcCC--CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555554 7999999999999999999999888876678888888876
No 43
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=51.70 E-value=30 Score=30.38 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+.--.+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 5555555454116999999999999999999998888877778899999888
No 44
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=51.59 E-value=34 Score=29.98 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=41.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 151 ~laral~~~p--~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 200 (242)
T PRK11124 151 AIARALMMEP--QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200 (242)
T ss_pred HHHHHHhcCC--CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5556665554 7999999999999999999999998887778888888887
No 45
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=51.51 E-value=35 Score=29.30 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 142 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 142 AIARALMSRP--KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred HHHHHHhcCC--CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5555555444 7999999999999999999999888877678888888877
No 46
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=51.40 E-value=33 Score=30.15 Aligned_cols=50 Identities=6% Similarity=0.006 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 154 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 154 AIARALAMRP--EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555665554 7999999999999999999998888877778888888887
No 47
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=51.39 E-value=50 Score=31.97 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred ccEEEE-cCcccHHHHHHHHHHHH---HHH---hhhh-HHHHHHHHHHHHhHHHHHHHHHhcCCccEEEEecCCccCcch
Q 048626 109 VRCAEI-SPGFTENQCHLHLLLEA---EEV---LYAS-SVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAI 180 (260)
Q Consensus 109 ~k~III-GPGf~k~~f~~yl~~~~---~Ev---L~~~-~v~~~l~~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~ 180 (260)
.+.++| |.|.....+.+.+.++- ..+ +.+. .-...+.......-..++.+.+....|+.++|+....
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~----- 199 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLS----- 199 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcc-----
Confidence 345777 99999999888775421 111 1111 0000111112221223666777778899999986533
Q ss_pred hhHHHHHHHHHHHHhcCCEEEEEcCC-----chhcccccccEEEE
Q 048626 181 ATRKKYVDLVNSVKDSGGTAHVFSSM-----SQGNLGQLTGVAAI 220 (260)
Q Consensus 181 ~~R~~~~~l~e~v~~~Gg~V~I~Ss~-----~GeqL~~lGGIAAI 220 (260)
.++...++++.+++.|.+|.++|+. .+..+..++|+..+
T Consensus 200 -~~~~~~~ll~~~~~~gv~V~~vP~~~e~~~~~~~~~~i~~v~~l 243 (445)
T TIGR03025 200 -EEARILELLLQLRDLGVDVRLVPDLFEFLLGRLRIEELGGVPLL 243 (445)
T ss_pred -cHHHHHHHHHHHHhcCCEEEEeCchhhhccCCcceEEECCEEEE
Confidence 2455778999999999999999986 23457788888754
No 48
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=51.32 E-value=33 Score=30.15 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 161 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~ 210 (252)
T CHL00131 161 EILQMALLDS--ELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210 (252)
T ss_pred HHHHHHHcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5555555554 7999999999999999999988887776678889888887
No 49
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=51.22 E-value=36 Score=29.14 Aligned_cols=50 Identities=6% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+|+.|+-+..-|+..++.+.+++....+.|..|++++.+
T Consensus 146 ~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 146 AIARALVHDP--PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred HHHHHHhcCC--CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5666665555 7999999999999999999999888877678888888887
No 50
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=51.17 E-value=35 Score=29.15 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..-=-.+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4555555541127889999999999999999988888877778999998888
No 51
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=51.16 E-value=84 Score=24.42 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=45.4
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEc-CC--chhccc-ccc-cEEEEe
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFS-SM--SQGNLG-QLT-GVAAIL 221 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~S-s~--~GeqL~-~lG-GIAAIL 221 (260)
++....++|.+|+..|-+.-++|+++.- +..++ .+...++..+-.++.++ +. -|.-+. .++ +++||.
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~----~~~~~---~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~~~~~vaI~ 87 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCP----KDIKE---DIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTVSALAIV 87 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCC----HHHHH---HHHHHHHHcCCCEEEECCCHHHHHHHhCCCCCEEEEEEe
Confidence 4444444999999999999999999853 22344 45666777899988873 44 555553 343 566664
No 52
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=51.16 E-value=35 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+..-|+..++.+.+++....+.|+.|+++|..
T Consensus 137 ~la~al~~~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 137 ALARLWLSR--APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred HHHHHHhcC--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 344444433 38999999999999999999999888766678888888886
No 53
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=50.82 E-value=52 Score=25.68 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=26.9
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCCchhcccccccEEEEeecCCCCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNL 228 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~~GeqL~~lGGIAAILRypi~~l 228 (260)
+||..-+|.-..|+..-+ ..|-.+..+-||+|.-++. =-|||||+-++.
T Consensus 3 s~L~V~NLP~~~d~~~I~--~RL~qLsdNCGGkVl~v~~-----------~tAilrF~~~~~ 51 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIK--NRLRQLSDNCGGKVLSVSG-----------GTAILRFPNQEF 51 (90)
T ss_dssp EEEEEES--TTS-HHHHH--HHHHHHHHTTT--EEE--T-----------T-EEEEESSHHH
T ss_pred cEEEEecCCCCCCHHHHH--HHHHHHhhccCCEEEEEeC-----------CEEEEEeCCHHH
Confidence 566666777655543221 2466777889999988753 368999987643
No 54
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.80 E-value=39 Score=28.37 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 114 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 114 VLARWLARDP--RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred HHHHHHccCC--CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4444544433 6999999999999999999999888876667888888777
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=50.68 E-value=36 Score=29.57 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 153 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 202 (236)
T cd03219 153 EIARALATDP--KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202 (236)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5555665554 7999999999999999999988888877678888888887
No 56
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=50.55 E-value=36 Score=28.81 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..|.++|.+
T Consensus 144 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 193 (206)
T TIGR03608 144 ALARAILKDP--PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193 (206)
T ss_pred HHHHHHHcCC--CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555665554 8999999999999999999999888876668888888877
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.43 E-value=37 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 144 ~laral~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 144 AIAGVLAMDP--DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555544 7999999999999999999988887776668888888887
No 58
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=50.15 E-value=1.3e+02 Score=26.16 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=49.6
Q ss_pred HHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHH-HHHHHHHHHhcCCEEEEEcCC--chhcccccccE
Q 048626 147 TKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK-YVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217 (260)
Q Consensus 147 ~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~-~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGI 217 (260)
..|..|++++..++..-.=.+|++.|+.++.-|+..+.. ...+++...+.|..+++.+.. --+.+...-++
T Consensus 90 S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v 163 (204)
T cd03282 90 STFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCV 163 (204)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCe
Confidence 466777777666666544478999999999988866555 456788888788888887776 33444444443
No 59
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=49.86 E-value=36 Score=30.22 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 162 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 162 SIARALAMEP--EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5566666555 6999999999999999999998888877779999999887
No 60
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=48.89 E-value=38 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 147 ~la~al~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 147 AIGRALMSQP--RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred HHHHHHHhCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 4445554444 7999999999999999999998888877678888888877
No 61
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.67 E-value=37 Score=29.12 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 141 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 141 ALARALAAQP--ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 4555555444 89999999999999999998888777654 48888888887
No 62
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=48.59 E-value=39 Score=29.59 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 155 ~laral~~~p--~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~ 204 (248)
T PRK09580 155 DILQMAVLEP--ELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204 (248)
T ss_pred HHHHHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5555555554 7999999999999999999998888777778889888887
No 63
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=48.45 E-value=60 Score=31.49 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=67.0
Q ss_pred cEEEE-cCcccHHHHHHHHHHHH---HHH---hhhh-HHHHHHHHHHHHhHHHHHHHHHhcCCccEEEEecCCccCcchh
Q 048626 110 RCAEI-SPGFTENQCHLHLLLEA---EEV---LYAS-SVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIA 181 (260)
Q Consensus 110 k~III-GPGf~k~~f~~yl~~~~---~Ev---L~~~-~v~~~l~~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~ 181 (260)
+.++| |.|.....+.+.+.... ..+ +.+. .-.....+.+......++.+.++...|+.++|+..-.
T Consensus 129 ~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~------ 202 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLA------ 202 (451)
T ss_pred CcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcc------
Confidence 45777 99999988888775431 111 1111 0000001112222223677778888899999997643
Q ss_pred hHHHHHHHHHHHHhcCCEEEEEcCC-----chhcccccccEEEE
Q 048626 182 TRKKYVDLVNSVKDSGGTAHVFSSM-----SQGNLGQLTGVAAI 220 (260)
Q Consensus 182 ~R~~~~~l~e~v~~~Gg~V~I~Ss~-----~GeqL~~lGGIAAI 220 (260)
.+....++++.++..|.+|.++|+. ...++..++|+-.+
T Consensus 203 ~~~~~~~ll~~~~~~gv~V~vvP~~~e~~~~~~~i~~l~g~p~l 246 (451)
T TIGR03023 203 AEDRILELLDALEDLTVDVRLVPDLFDFALLRPRIEEIGGLPVI 246 (451)
T ss_pred cHHHHHHHHHHHHhcCCEEEEeCchhhhccCCCceEEECCEEEE
Confidence 2456788999999999999999986 33466788887655
No 64
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=48.31 E-value=36 Score=26.64 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chhccccc
Q 048626 150 AQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQGNLGQL 214 (260)
Q Consensus 150 ~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~GeqL~~l 214 (260)
..|.++..+|+.+-.++++...=.-..+..--..-+++++.+.++..+++++||-.+ ++.|.++|
T Consensus 10 l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNL 75 (95)
T PF13167_consen 10 LEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNL 75 (95)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 345556677777667777665533222221112456899999999999999999988 77666443
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=48.29 E-value=41 Score=29.13 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 143 ~la~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 192 (232)
T cd03218 143 EIARALATNP--KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred HHHHHHhcCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455555444 8999999999999999999999888877778888888877
No 66
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=48.26 E-value=95 Score=27.53 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHH-HHHHHhc-CCEEEEEcCC--chhcccccccEE
Q 048626 147 TKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDL-VNSVKDS-GGTAHVFSSM--SQGNLGQLTGVA 218 (260)
Q Consensus 147 ~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l-~e~v~~~-Gg~V~I~Ss~--~GeqL~~lGGIA 218 (260)
..|..|++++...++.-.=.+|++.|++.+.-++..+..+... ++...+. |..+++.+.. -...+....++.
T Consensus 91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~ 166 (218)
T cd03286 91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVR 166 (218)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceE
Confidence 4677888888888777666799999999998887776665443 5555555 8888888777 344454445544
No 67
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=47.94 E-value=41 Score=28.19 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-... .+++.|+-+..-|+..++.+.+++....+. |..++++|..
T Consensus 107 ~laral~~~p--~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 107 LLARALAQEP--PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555555544 899999999999999999998888877655 7888888877
No 68
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.94 E-value=42 Score=28.75 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=40.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 137 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 137 ALARLLVSNR--PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5556665554 8999999999999999999988887765568888888887
No 69
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=47.71 E-value=40 Score=30.93 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..|+.+.+++....+.|..|+++|..
T Consensus 134 ~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~ 183 (302)
T TIGR01188 134 DIAASLIHQP--DVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183 (302)
T ss_pred HHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5566665555 8999999999999999999999888887778888888877
No 70
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=47.70 E-value=41 Score=29.15 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+.|..++++|..
T Consensus 153 ~laral~~~p--~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 153 SIAVQLLWDP--KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred HHHHHHHhCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5555555554 8999999999999999999999888877678888888776
No 71
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=47.59 E-value=40 Score=31.02 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=48.3
Q ss_pred HHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCCchhcccccccEEEEeec
Q 048626 156 VEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRF 223 (260)
Q Consensus 156 V~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~~GeqL~~lGGIAAILRy 223 (260)
+..|+-..+ .||+.|+-+-.-|+..+..+.+|+...++.|..|.+++.+-+.-..-+--|..|=|=
T Consensus 150 lARAL~~~p--~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 150 LARALAQNP--DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HHHHhccCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 344443333 799999999999999999999999999988999999999833333334444444443
No 72
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=47.40 E-value=41 Score=29.40 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+.|..|+++|..
T Consensus 147 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 147 EIARALAANP--KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 5555555555 7999999999999999999988888877778888888887
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=47.23 E-value=46 Score=28.31 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|..+++++.+
T Consensus 136 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 185 (208)
T cd03268 136 GIALALLGNP--DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185 (208)
T ss_pred HHHHHHhcCC--CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5555555554 7999999999999999999988888776678888888877
No 74
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.20 E-value=40 Score=29.42 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|..
T Consensus 140 ~laral~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 140 AIARALVNEP--KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555555554 89999999999999999999888877765 48899999887
No 75
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=47.19 E-value=45 Score=28.46 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-...-|+..++.+.+++....+.|..++++|.+
T Consensus 135 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 184 (201)
T cd03231 135 ALARLLLSGR--PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184 (201)
T ss_pred HHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4555554444 7999999999999999999998887766668888888876
No 76
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=47.18 E-value=42 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~ 192 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 6999999999999999999999888877678888888887
No 77
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.14 E-value=45 Score=28.28 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+.|..|+++|..
T Consensus 133 ~la~al~~~p--~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 133 AIARLIACQS--DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5555555554 8999999999999999999988887655678888888776
No 78
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=47.13 E-value=41 Score=29.11 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++.... +.|+.|+++|.+
T Consensus 156 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 156 ALARAFNGRP--DVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred HHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5666666554 7999999999999999999988887764 458888888888
No 79
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=47.02 E-value=42 Score=30.23 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=41.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 152 ~laraL~~~p--~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~ 201 (272)
T PRK15056 152 FLARAIAQQG--QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201 (272)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5556665554 7999999999999999999999888877778888888887
No 80
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=46.98 E-value=38 Score=31.37 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=42.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 175 alA~aL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 175 ALAGILAMEP--DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 5666666665 8999999999999999999999888877778899999888
No 81
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=46.90 E-value=42 Score=28.86 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+. |+.|+++|.+
T Consensus 155 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 155 AIARALALNP--KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred HHHHHHhcCC--CEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555555444 899999999999999999988877776554 8888888887
No 82
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=46.60 E-value=43 Score=29.72 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=41.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 147 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (256)
T TIGR03873 147 HVARALAQEP--KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHD 196 (256)
T ss_pred HHHHHHhcCC--CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5556665554 8999999999999999999999888887778888888887
No 83
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=46.34 E-value=48 Score=28.62 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..++++|.+
T Consensus 134 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~ 183 (223)
T TIGR03740 134 GIAIALLNHP--KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183 (223)
T ss_pred HHHHHHhcCC--CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4455555544 8999999999999999999998888776678888888888
No 84
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=46.28 E-value=1.1e+02 Score=25.93 Aligned_cols=96 Identities=7% Similarity=0.015 Sum_probs=51.0
Q ss_pred EEEE-cCcccHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHhHHH--------HHHHHHhc-CCccEEEEec
Q 048626 111 CAEI-SPGFTENQCHLHLLLEA--------EEVLYASSVMNMIKDTKAAQEVQ--------HVEVAHQR-MAVQTLHITD 172 (260)
Q Consensus 111 ~III-GPGf~k~~f~~yl~~~~--------~EvL~~~~v~~~l~~~k~~~E~~--------eV~~A~e~-GAVetLLIsD 172 (260)
.+|+ |||-=|..|.+.+.... .....++++++.+...+..+... ++.++++. ..=..+++.|
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlID 83 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLVD 83 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEeh
Confidence 3556 88888988888665432 00011222222222222211111 45555443 1112356666
Q ss_pred CCc-------cCcc-hhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 173 DLF-------RNTA-IATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 173 ~l~-------r~~d-~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+- ..++ ...+..+.++++..++.|..++++|.+
T Consensus 84 ~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 84 CLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 642 1111 233666788999999999999999988
No 85
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.28 E-value=45 Score=28.75 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .||+.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 141 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 141 EIARSLVHRP--EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred HHHHHHhcCC--CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5666666665 79999999999999999998887776555 48888888887
No 86
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=45.95 E-value=45 Score=29.57 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 148 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~ 197 (255)
T PRK11231 148 FLAMVLAQDT--PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4555555554 8999999999999999999988887776668888888887
No 87
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=45.86 E-value=44 Score=29.42 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .|||.|+-+..-|+..|+.+.+++....+. |..|+++|..
T Consensus 163 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 163 EIARCMVTQP--EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred HHHHHHhcCC--CEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 5555555555 899999999999999999999888777664 8888888887
No 88
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=45.82 E-value=47 Score=28.44 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 150 ~la~al~~~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 150 AIARALANDP--KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHccCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4455554444 79999999999999999999988887765 58888888887
No 89
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=45.77 E-value=1.7e+02 Score=24.73 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred EEE-cCcccHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhHHH--------HHHHHHhcC-CccEEEEec
Q 048626 112 AEI-SPGFTENQCHLHLLLEA---------EEVLYASSVMNMIKDTKAAQEVQ--------HVEVAHQRM-AVQTLHITD 172 (260)
Q Consensus 112 III-GPGf~k~~f~~yl~~~~---------~EvL~~~~v~~~l~~~k~~~E~~--------eV~~A~e~G-AVetLLIsD 172 (260)
+|+ |||-=|..|.+.+.... .+.+ +.++++.+...+..+-.. ++.++++.. .-+ .++-|
T Consensus 3 li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~-d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~-~VLID 80 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAELGGPVTYIATAEAF-DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD-VVLID 80 (169)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC-CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC-EEEEE
Confidence 566 88888888888543221 2222 333444444433332111 677776443 344 44555
Q ss_pred CCc-------cCcc----hhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 173 DLF-------RNTA----IATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 173 ~l~-------r~~d----~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+- ...+ ...++.+.+++...++.++.++++|.+
T Consensus 81 clt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnE 125 (169)
T cd00544 81 CLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNE 125 (169)
T ss_pred cHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 541 1111 123456778999999999999999988
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=45.72 E-value=45 Score=29.05 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 155 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 155 AIARALVNNP--RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5555665555 89999999999999999999998888764 58888888887
No 91
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.70 E-value=48 Score=27.70 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+. |..++++|.+
T Consensus 110 ~la~al~~~p--~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 110 ALARALAMDP--DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred HHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4455555544 899999999999999999999888877665 7788888777
No 92
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=45.33 E-value=84 Score=25.93 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHhcCC--ccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMA--VQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GA--VetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+.... =..|++.|+.++.-|+..+..+.+++....+.|..+++++..
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~ 140 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 6666666433 347999999999999999988887666554447788777766
No 93
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=45.32 E-value=1.4e+02 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHH-HHHHHHHHHhc-CCEEEEEcCC
Q 048626 146 DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK-YVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 146 ~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~-~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
...|..|++++.+.++.--=.+|++.|++++..++..... ...+++...+. +..+++.+..
T Consensus 91 ~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~ 153 (222)
T cd03287 91 MSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHY 153 (222)
T ss_pred cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 3467778887777776544589999999999887665555 34677776666 6777776666
No 94
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=45.22 E-value=1.5e+02 Score=26.07 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=41.7
Q ss_pred cEEEE-cCcccHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHhHHH------HHHHHHhcCCccEEEEecC
Q 048626 110 RCAEI-SPGFTENQCHLHLLLEAEEVLYASSVMNMIK--DTKAAQEVQ------HVEVAHQRMAVQTLHITDD 173 (260)
Q Consensus 110 k~III-GPGf~k~~f~~yl~~~~~EvL~~~~v~~~l~--~~k~~~E~~------eV~~A~e~GAVetLLIsD~ 173 (260)
++.++ -.+++|..|.+-+....+++|.+..+.+... .+++.++.. =++.|...-..+.++|||-
T Consensus 27 ~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~F~r~~~~~~~~~v~iIsD~ 99 (182)
T TIGR01223 27 VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDT 99 (182)
T ss_pred cceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccHHHHHHHhccCCCEEEEeCC
Confidence 46677 7789999998866555588888877666532 556766666 3444443333567777773
No 95
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=45.03 E-value=44 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+.+-|+..++.+.+++....+ .|..|+++|.+
T Consensus 157 ~laral~~~p--~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 157 WIAMLVAQDS--RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555544 89999999999999999998888877654 58889888888
No 96
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.98 E-value=45 Score=30.14 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 146 ~laral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~ 195 (274)
T PRK13644 146 ALAGILTMEP--ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195 (274)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4555555554 8999999999999999999998888776678899998887
No 97
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.83 E-value=46 Score=28.86 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 150 ~la~al~~~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 150 GIARALANNP--KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHhcCC--CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4455554443 79999999999999999999888877655 58888888877
No 98
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.80 E-value=45 Score=29.05 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 146 ~ia~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 146 ALARALALDP--ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred HHHHHHhcCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 5555555554 79999999999999999999888877665 58889988887
No 99
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=44.79 E-value=48 Score=30.43 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-...-|+..|+.+.+++....+.|..|+++|.+
T Consensus 145 ~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~ 194 (303)
T TIGR01288 145 TLARALINDP--QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194 (303)
T ss_pred HHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5556665544 7999999999999999999999888877778889888887
No 100
>PRK07283 hypothetical protein; Provisional
Probab=44.70 E-value=1.2e+02 Score=23.49 Aligned_cols=60 Identities=18% Similarity=0.052 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEe
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAIL 221 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAIL 221 (260)
.|.+|+..|.+.-++++.+.- +.+++++.. .++..+..++.+.+. -|.-+..=-.|.||+
T Consensus 25 ~v~~aik~gk~~lVi~A~Das----~~~~kk~~~---~~~~~~Vp~~~~~t~~eLG~a~Gk~~~vvai~ 86 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAG----PNLTKKVTD---KSNYYQVEVSTVFSTLELSAAVGKPRKVLAVT 86 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCC----HHHHHHHHH---HHHHcCCCEEEeCCHHHHHHHhCCCceEEEEe
Confidence 899999999999999998865 334555544 555678887766544 554443223466654
No 101
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.56 E-value=52 Score=28.32 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 141 ~la~al~~~p--~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 141 ALARALAVDP--DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHcCC--CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4555555544 7999999999999999999998887764 568888888887
No 102
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.30 E-value=46 Score=29.94 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 155 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 204 (280)
T PRK13649 155 AIAGILAMEP--KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204 (280)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5555555543 7999999999999999999888888776668888888887
No 103
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=44.22 E-value=53 Score=28.03 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|..
T Consensus 114 ~laral~~~p--~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 114 EILQLLLLEP--DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555555554 7999999999999999999888887776668888888887
No 104
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.22 E-value=47 Score=29.96 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 147 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 147 AIAGILAMKP--EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred HHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4445554433 7999999999999999999998888876668899999888
No 105
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.18 E-value=47 Score=29.08 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 146 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 146 ALARALAVEP--KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5666666655 79999999999999999998888877655 47788888887
No 106
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.85 E-value=49 Score=29.68 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+|+.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 146 ~laraL~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 146 AIAGALVLQ--ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred HHHHHHHcC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445555444 37999999999999999999999888877678888888877
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.83 E-value=48 Score=30.24 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-+.. .+||.|+-...-|+..|+.+.+++....+.|..|+++|.+
T Consensus 154 aiA~aL~~~p--~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd 203 (288)
T PRK13643 154 AIAGILAMEP--EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203 (288)
T ss_pred HHHHHHHhCC--CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5555665554 6999999999999999999999888877778899999888
No 108
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=43.43 E-value=53 Score=28.20 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|..
T Consensus 138 ~laral~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 138 ALARCLVRPN--PILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555443 79999999999999999999988887765 48888888877
No 109
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=43.08 E-value=52 Score=30.40 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-...-|+..|+.+.+++....+.|..|++.|..
T Consensus 148 ~la~aL~~~P--~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~ 197 (306)
T PRK13537 148 TLARALVNDP--DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHF 197 (306)
T ss_pred HHHHHHhCCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5666665554 8999999999999999999999998887778888888776
No 110
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=43.05 E-value=52 Score=28.06 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 140 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 140 ALGRAIVREP--KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555554444 7999999999999999999888777654 458889988887
No 111
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=43.00 E-value=51 Score=29.40 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+|+.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 8999999999999999999988887765 678888888887
No 112
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.92 E-value=47 Score=28.84 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ |..|+++|..
T Consensus 147 ~la~aL~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~ 195 (236)
T cd03253 147 AIARAILKNP--PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHR 195 (236)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 4555555554 79999999999999999999988888776 8888888877
No 113
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=42.92 E-value=51 Score=29.05 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 158 ~laral~~~p--~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 158 QIARNLVTRP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555555544 7999999999999999999988887765 458888888887
No 114
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=42.73 E-value=93 Score=23.28 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=47.5
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHH-HHHHHHhcCCEEEEEcCC--chhccccc--ccEEEEee
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD-LVNSVKDSGGTAHVFSSM--SQGNLGQL--TGVAAILR 222 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~-l~e~v~~~Gg~V~I~Ss~--~GeqL~~l--GGIAAILR 222 (260)
+....++|.+|++.|-+.-++++.+.-.. .+.. +...+++.+-.++.+++. -|.-+..- -.++|+..
T Consensus 16 lv~G~~~v~k~l~~~~~~lvilA~d~~~~-------~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g~~~~~~~~~i~d 87 (95)
T PF01248_consen 16 LVKGIKEVLKALKKGKAKLVILAEDCSPD-------SIKKHLPALCEEKNIPYVFVPSKEELGRACGKKRPVSALAIKD 87 (95)
T ss_dssp EEESHHHHHHHHHTTCESEEEEETTSSSG-------HHHHHHHHHHHHTTEEEEEESHHHHHHHHTTSSSTSSEEEEEE
T ss_pred EEEchHHHHHHHHcCCCcEEEEcCCCChh-------hhcccchhheeccceeEEEECCHHHHHHHHCCCCcEEEEEEEC
Confidence 44444499999999999999999987632 2333 667788999999999885 66655432 34555554
No 115
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.67 E-value=53 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 140 ~la~al~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 140 ALARALAREP--SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 5555555543 79999999999999999998888877654 58888888887
No 116
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.57 E-value=64 Score=26.18 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+++.|+-+..-|+..+..+.+++....+.|..++++|..
T Consensus 90 ~l~~~l~~~--~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 90 ALARALLLN--PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred HHHHHHhcC--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344444444 48999999999999999999888888776667778777776
No 117
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=42.50 E-value=76 Score=28.57 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred HHHHHHhc--CCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-ch--hcccccccEEEEeec
Q 048626 155 HVEVAHQR--MAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQ--GNLGQLTGVAAILRF 223 (260)
Q Consensus 155 eV~~A~e~--GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~G--eqL~~lGGIAAILRy 223 (260)
.|.+|++. -.+.+|+++.+.. .+++.++...+++.|.+++++|.. -- -.-..-.||+|+.+-
T Consensus 10 ~v~eal~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~i~~~~v~~~~l~~ls~~~~~qGv~a~~~~ 76 (244)
T PRK11181 10 AVQALLERAPERFIEVFVLKGRE-------DKRLLPLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKP 76 (244)
T ss_pred HHHHHHhCCCCceeEEEEECCCc-------chHHHHHHHHHHHcCCcEEEeCHHHHhhhhcCCCCceEEEEEec
Confidence 67788865 3788999986532 123567778888889999999887 11 112467899999873
No 118
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.35 E-value=1.4e+02 Score=22.36 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL 211 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL 211 (260)
+....++|.+|++.|-+.-++|+.+.- +..++ .+...++..+-.++.+.+. -|..+
T Consensus 12 l~~G~~~v~kai~~gkaklViiA~D~~----~~~~~---~i~~~c~~~~Vp~~~~~s~~eLG~a~ 69 (82)
T PRK13602 12 IVIGTKQTVKALKRGSVKEVVVAEDAD----PRLTE---KVEALANEKGVPVSKVDSMKKLGKAC 69 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCC----HHHHH---HHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 344445999999999999999999865 22343 4566677789999988876 55554
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=42.34 E-value=56 Score=28.28 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
....|+-... .+|+.|+-+..-|+..+..+.+++....+ .|..|+++|.+
T Consensus 141 ~la~al~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 141 AIARALVTRP--KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred HHHHHHhcCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 4555555544 79999999999999999999998887766 47788888877
No 120
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.17 E-value=52 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+ .|..|+++|.+
T Consensus 150 ~laral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 150 AIAGVLALQP--DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 5555555554 89999999999999999999888877665 48899999888
No 121
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.06 E-value=55 Score=29.58 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-...-|+..+..+.+++....+.|..|+++|.+
T Consensus 148 ~laraL~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~ 197 (274)
T PRK13647 148 AIAGVLAMDP--DVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197 (274)
T ss_pred HHHHHHHcCC--CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5555555554 8999999999999999999999888876668899999888
No 122
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=41.95 E-value=52 Score=27.44 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++.... .|+.|.++|.+
T Consensus 108 ~laral~~~p--~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 108 ALARILLQDA--PIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred HHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 4455555544 8999999999999999999888888775 47888888877
No 123
>PRK07714 hypothetical protein; Provisional
Probab=41.87 E-value=1.3e+02 Score=23.15 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhccc-ccccEEEEe
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLG-QLTGVAAIL 221 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~-~lGGIAAIL 221 (260)
+|.+|+..|-+.-++++.+.- +..+++ +...++..+..++.+.+. -|.-+. ....++||.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s----~~~~~k---i~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~vai~ 87 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDAS----VNTTKK---ITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVAVL 87 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCC----HHHHHH---HHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEEEe
Confidence 899999999999999998865 223444 455566778887766554 444442 233466664
No 124
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=41.50 E-value=52 Score=29.89 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=35.4
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
-.+|+.|+-+..-|+..++.+.+++....+. |..|+++|.+
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3799999999999999999999988877654 8889998888
No 125
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=41.47 E-value=55 Score=28.11 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHH--HHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD--LVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~--l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+ +....++.|+.++++|.+
T Consensus 150 ~laral~~~p--~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~ 201 (218)
T cd03290 150 CVARALYQNT--NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201 (218)
T ss_pred HHHHHHhhCC--CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 5555555555 7999999999999998888876 777777778888888887
No 126
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=41.37 E-value=55 Score=28.43 Aligned_cols=50 Identities=6% Similarity=0.043 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 147 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 147 SLIRNLQFMP--KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5555555554 7999999999999999999888877764 468888888887
No 127
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.25 E-value=58 Score=27.78 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++.... +.|..++++|.+
T Consensus 138 ~ia~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 138 ALARVLVRDK--PVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555554444 8999999999999999999988887765 458888888887
No 128
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=41.12 E-value=58 Score=29.06 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.|||.|+-+..-|+..++.+.+++... ++.|..|+++|.+
T Consensus 138 ~laral~~~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 138 GIARALAAN--PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred HHHHHHhcC--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445555444 3799999999999999999999888876 5568889888887
No 129
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=40.83 E-value=55 Score=32.21 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=42.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .|||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 406 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 455 (501)
T PRK11288 406 ILGRWLSEDM--KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455 (501)
T ss_pred HHHHHHccCC--CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5666665554 8999999999999999999999988877789999999998
No 130
>PRK06683 hypothetical protein; Provisional
Probab=40.71 E-value=1.6e+02 Score=22.24 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.....++|.+|+..|-+..++|..+.-. ..+ ..+.+.++..+-.++.+++.
T Consensus 12 ~v~G~~~v~kaik~gkaklViiA~Da~~----~~~---~~i~~~~~~~~Vpv~~~~t~ 62 (82)
T PRK06683 12 VVVGHKRTLEAIKNGIVKEVVIAEDADM----RLT---HVIIRTALQHNIPITKVESV 62 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCCH----HHH---HHHHHHHHhcCCCEEEECCH
Confidence 3344448999999999999999998652 223 35677788899999999876
No 131
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.64 E-value=59 Score=29.58 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 155 ~laral~~~p--~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 155 AIAGVMAYEP--EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHHHHHcCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5666666654 7999999999999999999999888877678888888887
No 132
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=40.33 E-value=61 Score=28.30 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 124 ~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 124 AIARALSIRP--KVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHcCC--CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5666666666 7999999999999999999988777654 458888888887
No 133
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=40.20 E-value=1.6e+02 Score=24.91 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHH-HHHHHHHHh-cCCEEEEEcCC
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKY-VDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~-~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..+++.+..++..--=..|++.|+.++.-|+..+..+ ..+++...+ .|..+++.+..
T Consensus 61 ~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 61 TFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 456666666666665222579999999999998877664 567776665 47777766665
No 134
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.16 E-value=57 Score=28.66 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 141 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 141 SIARTLANNP--EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 4555555444 79999999999999999998887777655 58899998888
No 135
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=39.93 E-value=1.7e+02 Score=23.25 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE-cCC--chhccc-cccc-EEEEe
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF-SSM--SQGNLG-QLTG-VAAIL 221 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~-Ss~--~GeqL~-~lGG-IAAIL 221 (260)
+|.+|+..|-+.-++|+.+.- +.++++ +...++..|..++.+ .+. -|.-+. .++. ++||+
T Consensus 32 ~vlkalk~gkaklViiA~D~~----~~~kkk---i~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~r~svvaI~ 96 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCP----PIRRSE---IEYYAMLSKTGVHHYAGNNNDLGTACGRHFRVSVMSIT 96 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCC----HHHHHH---HHHHHhhcCCCEEEeCCCHHHHHHHhCCccCeEEEEEe
Confidence 999999999999999999865 224554 455566678888865 333 554443 3444 66765
No 136
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=39.85 E-value=1.3e+02 Score=26.77 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHH-HHHHHHHHh-cCCEEEEEcCC
Q 048626 146 DTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKY-VDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 146 ~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~-~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
...|..|++++...++.--=.+|++.|++.|..++..+..+ ..+++...+ .++-+++....
T Consensus 103 ~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~ 165 (235)
T PF00488_consen 103 LSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHF 165 (235)
T ss_dssp SSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-
T ss_pred cccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEecc
Confidence 44788888877777776556899999999999998877663 357777776 57766554443
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.64 E-value=80 Score=28.69 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..+..+.+++.... +.|..|+++|.+
T Consensus 155 ~laraL~~~p--~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 155 AIVSILAMNP--DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred HHHHHHHhCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 6667776666 8999999999999999999999888765 468899999887
No 138
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=39.57 E-value=58 Score=32.08 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 415 ~lA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 415 VLAKCLLLNP--KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred HHHHHHhhCC--CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 5555655543 7999999999999999999999888887789999999988
No 139
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=39.55 E-value=62 Score=30.58 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-...-|+..|+.+.+++....+.|..|++.|..
T Consensus 182 ~lA~aL~~~P--~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~ 231 (340)
T PRK13536 182 TLARALINDP--QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231 (340)
T ss_pred HHHHHHhcCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 6666666665 8999999999999999999999888877678888887776
No 140
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=39.46 E-value=68 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcC-CEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSG-GTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~G-g~V~I~Ss~ 206 (260)
.+..|+-... .+++.|+-+..-|+..++.+.+++....+.+ ..|+++|.+
T Consensus 81 ~laral~~~p--~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 81 AIAAALLRNA--TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred HHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4555555544 7999999999999999999888887776554 788888887
No 141
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.44 E-value=59 Score=29.35 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 150 ~lAraL~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 150 AVAGIIALRP--EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5566666555 79999999999999999998888877765 58999999888
No 142
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=39.40 E-value=95 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+++.|+-...-|+..++.+.+++....+.|..|+++|.+
T Consensus 149 ~laral~~~p--~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd 198 (255)
T cd03236 149 AIAAALARDA--DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198 (255)
T ss_pred HHHHHHHhCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6666776665 7999999999999999999999888887778889998888
No 143
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=39.40 E-value=61 Score=29.10 Aligned_cols=50 Identities=22% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 153 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 153 ALARAIALEP--DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 5555555544 79999999999999999998888877654 48888888887
No 144
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=39.14 E-value=65 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 153 ~Laral~~~p--~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 153 GFSINITVNP--DILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHHHhhCC--CEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5555555555 7999999999999999999888888777778889998887
No 145
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=39.08 E-value=60 Score=29.10 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ .|..|+++|..
T Consensus 159 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 159 GLARALILRP--KVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHhCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 5555665554 89999999999999999998887777654 58888888887
No 146
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=38.94 E-value=64 Score=28.25 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-... .+++.|+-...-|+..++.+.+++....+. |..|+++|..
T Consensus 140 ~laral~~~p--~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~ 190 (237)
T TIGR00968 140 ALARALAVEP--QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190 (237)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5556665555 899999999999999999998888876665 7888888877
No 147
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.69 E-value=63 Score=28.07 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 154 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 154 AIARALMQQP--KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5556666555 7999999999999999999888777765 458888888887
No 148
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=38.68 E-value=64 Score=28.04 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 139 ~laral~~~p--~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 139 ALARCLVREQ--PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4445555444 7999999999999999999988887765 458888888887
No 149
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.67 E-value=2.2e+02 Score=33.43 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=45.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+....|||.|+-.-.-|+..++.+.+++....+.|..|++++.+
T Consensus 486 ~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd 537 (1809)
T PRK00635 486 ALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD 537 (1809)
T ss_pred HHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 7777787777778999999998889999999999999988889999999888
No 150
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=38.47 E-value=69 Score=27.65 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=34.7
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+|+.|+-+..-|+..++.+.+++....+.|..|+++|..
T Consensus 153 ~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~ 192 (213)
T cd03279 153 EALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 6899999999989999999888888877778889998887
No 151
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=38.19 E-value=62 Score=31.72 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..|+.+.+++....+.|+.|+++|.+
T Consensus 401 ~la~al~~~p--~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 401 IIGRWLLTQP--EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred HHHHHHhcCC--CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4444444444 7999999999999999999999998887789999999998
No 152
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=38.02 E-value=66 Score=27.99 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..+..+.+++....+ .|..|+++|.+
T Consensus 135 ~laral~~~p--~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 185 (230)
T TIGR02770 135 MIALALLLEP--PFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 (230)
T ss_pred HHHHHHhcCC--CEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5556665554 79999999999999999998887777655 57888888887
No 153
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=37.70 E-value=65 Score=27.44 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=38.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ |..++++|.+
T Consensus 135 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~th~ 183 (207)
T cd03369 135 CLARALLKRP--RVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHR 183 (207)
T ss_pred HHHHHHhhCC--CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 4555554443 79999999999999999998888887754 7788888877
No 154
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.69 E-value=65 Score=29.33 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-...-|+..+..+.+++....+ .|..|+++|.+
T Consensus 154 ~iAraL~~~P--~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 154 AIAGVVAMEP--KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred HHHHHHHcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555554433 79999999999999999999998887755 58888888887
No 155
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=37.54 E-value=96 Score=27.72 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-ch--hcccccccEEEEeecC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQ--GNLGQLTGVAAILRFP 224 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~G--eqL~~lGGIAAILRyp 224 (260)
.|.+|++.| ..+++...+. . .+..++...+++.+.+++.+|.. -- -.-..-.||+|..+.+
T Consensus 9 ~v~eal~~~--~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~ 72 (237)
T TIGR00186 9 AVLEALLNQ--QRVFILKGLE-S------KRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPI 72 (237)
T ss_pred HHHHHHhCC--CEEEEEecCc-c------hHHHHHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEecC
Confidence 578888888 6777766542 1 13446788888889999999877 11 1123567999999864
No 156
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=37.49 E-value=65 Score=28.04 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..|+.+.+++.... .|..|+++|.+
T Consensus 149 ~la~al~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~ 197 (238)
T cd03249 149 AIARALLRNP--KILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHR 197 (238)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 5556665555 6999999999999999999999888776 67788888777
No 157
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=37.37 E-value=68 Score=27.73 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=34.7
Q ss_pred cEEEEecCCccCcchhhHH-HHHHHHHHHHhc-CCEEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRK-KYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~-~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
-.+++.|+-+..-|+..++ .+.+++....+. |+.|+++|..
T Consensus 140 p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 140 CGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 4799999999998999998 888888777665 7888888887
No 158
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=37.27 E-value=66 Score=31.54 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=41.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+ -.|||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 413 ~la~al~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 413 VLAKMLLTN--PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred HHHHHHhhC--CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 555566555 37999999999999999999998888877779899999998
No 159
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.25 E-value=68 Score=28.98 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 147 ~laraL~~~p--~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 147 AIAGVIAMEP--QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4555555544 79999999999999999999888877665 48888888877
No 160
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.22 E-value=71 Score=28.07 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+ |..++++|.+
T Consensus 156 ~laral~~~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 156 CIARALAFQP--EVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 5555555443 89999999999999999999988888765 7778888777
No 161
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=37.15 E-value=65 Score=28.01 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 148 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 196 (237)
T cd03252 148 AIARALIHNP--RILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHR 196 (237)
T ss_pred HHHHHHhhCC--CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 5556665554 79999999999999999999988887764 7788888887
No 162
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.14 E-value=67 Score=29.08 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 150 ~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 150 AIAGAVAMRP--KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred HHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555555554 79999999999999999999888777654 58899999888
No 163
>PRK04148 hypothetical protein; Provisional
Probab=37.07 E-value=2e+02 Score=23.93 Aligned_cols=36 Identities=11% Similarity=-0.029 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCEEEEEc--CC---chhcccccccEE
Q 048626 183 RKKYVDLVNSVKDSGGTAHVFS--SM---SQGNLGQLTGVA 218 (260)
Q Consensus 183 R~~~~~l~e~v~~~Gg~V~I~S--s~---~GeqL~~lGGIA 218 (260)
++-...+++.|++.|+.++|.+ .+ .+-+|.+..|.+
T Consensus 88 ~el~~~~~~la~~~~~~~~i~~l~~e~~~~~~kl~ny~~~~ 128 (134)
T PRK04148 88 RDLQPFILELAKKINVPLIIKPLSGEEPIKELKLINYKGKP 128 (134)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCcceEEEecCCeE
Confidence 4556679999999999999984 33 556777777753
No 164
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=36.97 E-value=66 Score=31.83 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .|||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 413 ~la~al~~~p--~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd 462 (510)
T PRK15439 413 LIAKCLEASP--QLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462 (510)
T ss_pred HHHHHHhhCC--CEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5566665554 7999999999999999999999888877778899999988
No 165
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.94 E-value=68 Score=29.24 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-...-|+..+..+.+++.... +.|..|+++|.+
T Consensus 155 ~lAraL~~~P--~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 155 AIAGVLAMEP--EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred HHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5666666554 7999999999999999999888777764 458899999888
No 166
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=36.82 E-value=88 Score=28.20 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=46.4
Q ss_pred hcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC----chhcccccccEEEEeecCCCCCCCCccccc
Q 048626 161 QRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM----SQGNLGQLTGVAAILRFPLPNLTKNDKCSM 236 (260)
Q Consensus 161 e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~----~GeqL~~lGGIAAILRypi~~l~~~~~~~~ 236 (260)
+.++.+.||.+|=.+- ...-.++.......+..|..|+|++.. .=++|..|- .|++|...+.|+...
T Consensus 139 ~~~~~Dl~LagDlfy~---~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~a------~yqvp~~~~~ed~~v 209 (218)
T COG3897 139 SPPAFDLLLAGDLFYN---HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFLA------IYQVPMFRELEDAAV 209 (218)
T ss_pred CCcceeEEEeeceecC---chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhhh------hccCcccccccCcce
Confidence 5566676776665552 223455666888889999999999876 334444332 578888888777666
Q ss_pred ch
Q 048626 237 KC 238 (260)
Q Consensus 237 ~~ 238 (260)
||
T Consensus 210 kr 211 (218)
T COG3897 210 KR 211 (218)
T ss_pred ee
Confidence 65
No 167
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.82 E-value=69 Score=29.92 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 186 aiAraL~~~--p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 186 AIAGILAIQ--PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred HHHHHHHcC--CCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 444444443 36899999999999999999998888776678899999888
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=36.80 E-value=71 Score=28.32 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 161 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 161 QIARNLVTHP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5556665554 89999999999999999998887777654 58888888887
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=36.71 E-value=77 Score=28.49 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++... ++.|..|+++|.+
T Consensus 143 ~laraL~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 143 ALARALIHRP--GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555554 899999999999999999988888776 4568889998888
No 170
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=36.42 E-value=70 Score=31.49 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 419 ~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 419 LISKWLCCCP--EVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred HHHHHHhcCC--CEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5555555553 8999999999999999999999888876778889999988
No 171
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=36.41 E-value=71 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++... ++.|..|+++|..
T Consensus 150 ~laral~~~p--~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 150 MIALALLCEA--PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHHHhcCC--CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 5555555554 799999999999999999988877765 4468889898887
No 172
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=36.33 E-value=78 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+.+-|+..++.+.+++.... +.|..|+++|.+
T Consensus 151 ~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 151 AIARALVNQP--SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHhCCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4444444443 7999999999999999999888777665 457888888877
No 173
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=36.24 E-value=71 Score=28.53 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 160 ~laral~~~p--~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 160 NIARALAVKP--KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5555655544 79999999999999999998888877654 58888888887
No 174
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.16 E-value=74 Score=28.02 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 159 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~ 207 (251)
T PRK14244 159 CIARAIAVKP--TMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHS 207 (251)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 4555555444 79999999999999999999998888754 7888888887
No 175
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=36.09 E-value=72 Score=28.35 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 162 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 162 AIARALMQQA--KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred HHHHHHhcCC--CEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555444 79999999999999999998888877764 58888888887
No 176
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=36.01 E-value=73 Score=27.73 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 155 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 155 AIARALAQQP--DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4445554444 79999999999999999998888877654 57788888877
No 177
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.99 E-value=74 Score=28.51 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+ .|..++++|..
T Consensus 152 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 152 AIAGVLALNP--SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555555555 89999999999999999998888877654 57888888777
No 178
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.88 E-value=72 Score=28.94 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=38.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-...-|+..+..+.+++....+ .|..|+++|.+
T Consensus 151 ~laraL~~~p--~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~ 201 (283)
T PRK13636 151 AIAGVLVMEP--KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201 (283)
T ss_pred HHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4444444333 79999999999999999998887776654 48888888887
No 179
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.66 E-value=57 Score=31.91 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhccccCCccEEEE-cCcccHHH-----------------------HHHHHHHHHHHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQ-----------------------CHLHLLLEAEEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~-----------------------f~~yl~~~~~EvL~~~~v~~~l~~ 146 (260)
+|++.|.+-..+...+..-+-=|+ +||-+.-- |++.++...++++..|-+. .+
T Consensus 64 ~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~---~~ 140 (388)
T COG1168 64 ELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVE---DD 140 (388)
T ss_pred HHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccc---cC
Confidence 799999988877754332222244 66655422 2222222225555554221 45
Q ss_pred HHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 147 TKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 147 ~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.++.-...+.++|+..++|..++++.--.-...+=+++.+..+.+.++++|. .|||.+
T Consensus 141 ~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v--~VISDE 198 (388)
T COG1168 141 GRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGV--RVISDE 198 (388)
T ss_pred CcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCC--EEEeec
Confidence 5666666689999999999998887643322222246778899999999985 556666
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=35.66 E-value=1.1e+02 Score=26.90 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+ |..|+++|..
T Consensus 156 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14240 156 CIARALAVEP--EVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHN 204 (250)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeC
Confidence 6666666666 89999999999999999999888888754 7788888777
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=35.64 E-value=85 Score=27.03 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-...-|+..+..+..++....+ .|..|+++|.+
T Consensus 151 ~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 151 AIARALVHRP--KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHhcCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555554 89999999999999999998888876654 68899999888
No 182
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=35.42 E-value=73 Score=29.76 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+ .|..++++|.+
T Consensus 168 ~iArAL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 168 MIAIALANQP--RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred HHHHHHHCCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5555555554 89999999999999999999988887765 58899999887
No 183
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.38 E-value=76 Score=27.77 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..++.+.+++....+ .|..|+++|..
T Consensus 145 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 145 GVARALAADP--PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred HHHHHHhcCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4455555444 79999999999999999998887777654 58888888887
No 184
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=35.21 E-value=74 Score=28.56 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 161 ~laral~~~p--~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 161 CLARALAVEP--KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred HHHHHHhcCC--CEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 5555555554 79999999999999999998888877654 58888888887
No 185
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=35.19 E-value=78 Score=28.27 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..+..+.+++....+ .|..|+++|.+
T Consensus 130 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 130 LLARALLNRP--QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555565554 79999999999999999998887777655 48888888887
No 186
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=35.13 E-value=72 Score=29.42 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-...-||..|..+.+++....+.|+..+++||.
T Consensus 146 ~ia~aL~~~P--~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH 195 (293)
T COG1131 146 SIALALLHDP--ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195 (293)
T ss_pred HHHHHHhcCC--CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 5555555555 8999999999999999999999888888888544444444
No 187
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=35.05 E-value=1.7e+02 Score=25.57 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHH-HHHHHHHHHhcC--C-EEEEEcCC
Q 048626 147 TKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK-YVDLVNSVKDSG--G-TAHVFSSM 206 (260)
Q Consensus 147 ~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~-~~~l~e~v~~~G--g-~V~I~Ss~ 206 (260)
..|..|++.+..|+..-.=..|++.|+.++.-|+..... ...+++...+.| + .+++.+..
T Consensus 90 S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~ 153 (213)
T cd03281 90 SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHF 153 (213)
T ss_pred chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCh
Confidence 467888888888887666679999999999998765444 455777665543 3 45554554
No 188
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.03 E-value=74 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..|+.+.+++.... .|..|+++|.+
T Consensus 149 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 197 (229)
T cd03254 149 AIARAMLRDP--KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHR 197 (229)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 5555555444 7999999999999999999998888875 47788888877
No 189
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=34.84 E-value=83 Score=25.53 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
++.+..+++.+|++.|-..-++|+.|.- -.+-...+-..++.+|..+.++.|.
T Consensus 27 ki~~G~~e~~Kai~~g~a~LVviA~Dv~------P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 27 KLKKGTNEVTKAIERGKAKLVVIAEDVS------PEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred CchhhHHHHHHHHHcCCCcEEEEecCCC------HHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 5677777999999999999999998754 1233445777788899999999887
No 190
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.70 E-value=80 Score=27.72 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+ |+.|+++|..
T Consensus 156 ~laral~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~ 204 (250)
T PRK14266 156 CIARTIAVSP--EVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHN 204 (250)
T ss_pred HHHHHHHcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 5555555544 79999999999999999999998888765 7888888877
No 191
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.61 E-value=80 Score=27.77 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 156 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~ 204 (250)
T PRK14245 156 CIARAMAVSP--SVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHN 204 (250)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 5555555444 79999999999999999999998888754 7788888877
No 192
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=34.44 E-value=81 Score=27.77 Aligned_cols=50 Identities=6% Similarity=0.030 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+||.|+-+..-|+..+..+.+++....+ .|..++++|.+
T Consensus 156 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 156 AIARALAMRP--KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5555555544 79999999999999999998888877655 58888888887
No 193
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.28 E-value=78 Score=27.40 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 148 ~la~al~~~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 196 (234)
T cd03251 148 AIARALLKDP--PILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHR 196 (234)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 5555665554 69999999999999999999998887764 7778888777
No 194
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.27 E-value=82 Score=27.68 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..+..+.+++....+ |..|+++|.+
T Consensus 152 ~laral~~~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 200 (246)
T PRK14269 152 CIARALAIKP--KLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN 200 (246)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 5555655555 79999999999999999998888877755 7888888887
No 195
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.15 E-value=1.8e+02 Score=31.77 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=45.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+....|||.|+-.-.-|+..+..+.+++...++.|..|++++.+
T Consensus 499 ~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 499 RLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 7777777777778999999998889999999999999888889999999887
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.87 E-value=80 Score=28.63 Aligned_cols=50 Identities=4% Similarity=0.002 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 160 ~laral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 160 ALAGIIAMDG--NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred HHHHHHHhCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555555544 79999999999999999998888877654 58888888887
No 197
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=33.80 E-value=95 Score=27.04 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++.... +.|..++++|.+
T Consensus 142 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 142 EIARALLHRP--ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred HHHHHHhcCC--CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4555555544 8999999999999999999888777665 468888888877
No 198
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.78 E-value=85 Score=27.56 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 157 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~ 205 (251)
T PRK14251 157 CIARALAVRP--KVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHN 205 (251)
T ss_pred HHHHHHhcCC--CEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECC
Confidence 5566665544 79999999999999999999988888754 6788888887
No 199
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=33.67 E-value=94 Score=27.23 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+|+.|+-+..-|+..++.+.+++.... +.|+.|+++|.+
T Consensus 163 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 163 EIAAALLHEP--EILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred HHHHHHhcCC--CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 5555665554 7999999999999999999888777754 457888888877
No 200
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=33.63 E-value=79 Score=29.66 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-...-|+..+..+.+++....+ .|..++++|.+
T Consensus 171 ~IArAL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 171 MIAMALLCRP--KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred HHHHHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 5666666655 89999999999999999999988877655 58899999888
No 201
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.57 E-value=82 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 153 ~laral~~~P--~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 153 AIAGILAVEP--KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4445554443 79999999999999999998888877654 58889998887
No 202
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.56 E-value=93 Score=26.59 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=37.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..|+.+.+++....+. |+.++++++.
T Consensus 128 ~laral~~~p--~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 128 SIAEALVSRA--SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHHHHhhCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4445554444 799999999999999999999988887654 6666666554
No 203
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=33.55 E-value=87 Score=27.82 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .|||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 166 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~ 214 (260)
T PRK10744 166 CIARGIAIRP--EVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHN 214 (260)
T ss_pred HHHHHHHCCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 5566666555 89999999999999999998888888754 6778888877
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.52 E-value=86 Score=27.60 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=38.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..+..+.+++....+ +..|+++|.+
T Consensus 157 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~ 205 (251)
T PRK14270 157 CIARTIAVKP--DVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHN 205 (251)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence 5555555443 79999999999999999999888887765 5778888877
No 205
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.32 E-value=88 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 170 ~lAral~~~p--~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 170 GLARALAVDP--DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555554 8999999999999999999998877664 457888888877
No 206
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=33.26 E-value=80 Score=29.58 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-...-|+..++.+.+++....+ .|..++++|.+
T Consensus 164 ~iArAL~~~P--~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 164 AIARALMLDP--DVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HHHHHHHcCC--CEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5666666655 79999999999999999999887777654 68899999887
No 207
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.17 E-value=89 Score=27.74 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+ |..|+++|.+
T Consensus 164 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~ 212 (258)
T PRK14268 164 CIARTLAVKP--KIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHN 212 (258)
T ss_pred HHHHHHHcCC--CEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 5556665554 89999999999999999999888887754 7888888887
No 208
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=33.04 E-value=45 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=18.1
Q ss_pred HHHHHHHhccccC-CccEEEE-cCccc
Q 048626 95 SVLHAFLKHVDFN-VVRCAEI-SPGFT 119 (260)
Q Consensus 95 ~V~~~l~~~~~~~-~~k~III-GPGf~ 119 (260)
+|++.+.+++... .+..+-+ ||||+
T Consensus 55 ~iA~~i~~~l~~~~~i~~vev~gpGFi 81 (85)
T PF03485_consen 55 EIAEEIAEKLEKSPIIEKVEVAGPGFI 81 (85)
T ss_dssp HHHHHHHHCHCTTTTEEEEEEETTTEE
T ss_pred HHHHHHHHhcCCCCCEEEEEEcCCcEE
Confidence 5666777766433 3888999 99996
No 209
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=32.93 E-value=89 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
-+..|+-... .|||.|+-...-|+..+..+.+++....+ .|..++++|.+
T Consensus 163 ~iArAL~~~P--~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 163 MIAMAIACRP--KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5566666555 79999999999999999999887777654 68899999888
No 210
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.93 E-value=82 Score=28.28 Aligned_cols=50 Identities=6% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcC-CEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSG-GTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~G-g~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..++.+.+++....+.| ..|+++|.+
T Consensus 152 ~laral~~~p--~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 152 AIASVLALNP--EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 5566666555 7999999999999999999998888876654 677777766
No 211
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.84 E-value=90 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+ |..|+++|..
T Consensus 160 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~ 208 (254)
T PRK14273 160 CIARTLAIEP--NVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHN 208 (254)
T ss_pred HHHHHHHcCC--CEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 5566665554 79999999999999999999998888864 7788888877
No 212
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.78 E-value=99 Score=26.31 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 140 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 188 (211)
T cd03264 140 GIAQALVGDP--SILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI 188 (211)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 4555555444 79999999999999999999998888776 5778888877
No 213
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=32.77 E-value=84 Score=29.52 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=41.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-...-|+..+..+.+++....+ .|..++++|.+
T Consensus 171 ~iArAL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 171 GIARALILEP--KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5556665554 89999999999999999999988877654 58999999888
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.51 E-value=92 Score=25.77 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+ |..++++|.+
T Consensus 106 ~la~al~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~ 154 (171)
T cd03228 106 AIARALLRDP--PILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR 154 (171)
T ss_pred HHHHHHhcCC--CEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 4555555544 69999999999999999999998887754 6677777666
No 215
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=32.38 E-value=89 Score=30.73 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 405 ~lA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd 454 (501)
T PRK10762 405 AIARGLMTRP--KVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 (501)
T ss_pred HHHHHHhhCC--CEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5666665554 7999999999999999999999888877678889999888
No 216
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=32.16 E-value=89 Score=28.25 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..|..+.+++.... +.|..|+++|.+
T Consensus 154 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 154 AIAGILAMRP--ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555665554 8999999999999999999988888775 458899999877
No 217
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=32.13 E-value=85 Score=27.81 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=35.2
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+++.|+-...-|+..+..+.+++....+.|..|+++|..
T Consensus 179 ~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 179 PFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 6899999999999999999888888877678899999887
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.95 E-value=94 Score=27.92 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 164 ~laral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~ 212 (269)
T PRK14259 164 CIARTIAIEP--EVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHN 212 (269)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 4455555444 79999999999999999999988888754 6778887777
No 219
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=31.79 E-value=97 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHHHHhcCCc-cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAV-QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAV-etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-...- -.|+|.|+-+..-|+..+..+.+++....+.|..|++++.+
T Consensus 179 ~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 179 KLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 44444443321 37999999999999999999998888887789999999887
No 220
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=31.64 E-value=89 Score=26.77 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=37.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..|+.+.+++....+ +..|+++|..
T Consensus 149 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 149 CLARALLRKS--KILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 4455554444 69999999999999999999988887754 6778887777
No 221
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.52 E-value=99 Score=27.21 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=38.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+..-|+..+..+.+++.... .|..|+++|..
T Consensus 157 ~laral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~ 205 (251)
T PRK14249 157 CIARVLAIE--PEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN 205 (251)
T ss_pred HHHHHHhcC--CCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 444444433 38999999999999999999988888875 47888888887
No 222
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=31.51 E-value=90 Score=27.44 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..+..+.+++....+ |..|+++|.+
T Consensus 159 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~ 207 (253)
T PRK14242 159 CIARALAVEP--EVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN 207 (253)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEec
Confidence 5566665554 79999999999999999999998888754 7788888777
No 223
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=31.45 E-value=1e+02 Score=26.86 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+ +..|+++|..
T Consensus 153 ~laral~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 201 (242)
T TIGR03411 153 EIGMLLMQDP--KLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD 201 (242)
T ss_pred HHHHHHhcCC--CEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 5556665555 79999999999999999999998888765 6777777777
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=30.98 E-value=91 Score=26.69 Aligned_cols=49 Identities=6% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 150 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 198 (220)
T cd03245 150 ALARALLNDP--PILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHR 198 (220)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 5555555543 79999999999999999999998887765 3677787777
No 225
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=30.97 E-value=1e+02 Score=27.04 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 158 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 206 (252)
T PRK14239 158 CIARVLATSP--KIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRS 206 (252)
T ss_pred HHHHHHhcCC--CEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 4445554433 79999999999999999999998888765 6778888777
No 226
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=30.75 E-value=99 Score=26.23 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=37.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHH-HHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD-LVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~-l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+++.|+-+..-|+..++.+.. ++....+.|..|+++|..
T Consensus 137 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 137 SLARAVYSDA--DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 5555555555 7999999999989988887765 566554458888888877
No 227
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=30.58 E-value=1e+02 Score=27.77 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+.+-|+..+..+.+++....+ |..|+++|.+
T Consensus 177 ~laraL~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 225 (271)
T PRK14238 177 CIARCLAIEP--DVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHN 225 (271)
T ss_pred HHHHHHHcCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 5555555544 79999999999999999999988888765 6778888777
No 228
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=30.52 E-value=2.4e+02 Score=22.84 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=46.6
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccc--cccEEEEe
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQ--LTGVAAIL 221 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~--lGGIAAIL 221 (260)
++....++|.+|++.|-+.-++|+.+.-. +.-...+...+++.|-.+..+.+. -|.-+.. --.++||+
T Consensus 30 klv~G~~~v~kaikkgkakLVilA~D~s~------~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~Gk~~~~svvaI~ 101 (122)
T PRK04175 30 KIKKGTNETTKAVERGIAKLVVIAEDVDP------EEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAGLEVGAAAAAIV 101 (122)
T ss_pred CEeEcHHHHHHHHHcCCccEEEEeCCCCh------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCeEEEEEe
Confidence 34444559999999999999999998652 122346777788899888777665 5544432 23466665
No 229
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=30.40 E-value=97 Score=30.49 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.||+.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 151 ~la~al~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd 200 (501)
T PRK10762 151 EIAKVLSFE--SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR 200 (501)
T ss_pred HHHHHHhcC--CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555555444 36999999999999999999999888877778888888887
No 230
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.13 E-value=1.1e+02 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++....+ .|..++++|.+
T Consensus 139 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 139 AIARALVVNP--KILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred HHHHHHHcCC--CEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5566666555 79999999999999999998887777554 58888888887
No 231
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=30.13 E-value=1e+02 Score=30.40 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=41.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 155 ~ia~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd 204 (510)
T PRK09700 155 EIAKTLMLDA--KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204 (510)
T ss_pred HHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5566665554 7999999999999999999999888877678888888887
No 232
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=30.11 E-value=1e+02 Score=27.62 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ +..|+++|..
T Consensus 178 ~laral~~~p--~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~ 226 (272)
T PRK14236 178 VIARAIAIEP--EVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN 226 (272)
T ss_pred HHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCC
Confidence 5556665554 89999999999999999999988888765 6778888777
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.10 E-value=1e+02 Score=27.11 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .||+.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 159 ~laral~~~p--~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~ 207 (253)
T PRK14261 159 CIARTLAVNP--EVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHN 207 (253)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcC
Confidence 4555555553 89999999999999999999988888766 5778888777
No 234
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=30.09 E-value=1.1e+02 Score=27.42 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .||+.|+-+..-|+..++.+.+++....+ .|..|++++.+
T Consensus 153 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 153 WIAMVLAQET--AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred HHHHHHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555555544 89999999999999999998887777654 57888888877
No 235
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.91 E-value=1.1e+02 Score=27.22 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..+..+.+++....+ +..++++|..
T Consensus 165 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~ 213 (259)
T PRK14274 165 CIARALATNP--DVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN 213 (259)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 4455555444 79999999999999999999998888765 7788888877
No 236
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=29.80 E-value=1e+02 Score=29.32 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+.+++.+.+++....+ .|..|++++.+
T Consensus 150 ~IARAL~~~P--~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 150 AIARALASNP--KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHHhCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5666666554 89999999999999999999988887755 58999999887
No 237
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=29.74 E-value=1e+02 Score=30.18 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=41.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 144 ~lA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~ 193 (491)
T PRK10982 144 EIAKAFSYNA--KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193 (491)
T ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5666666555 7999999999999999999998888877778889888887
No 238
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.54 E-value=1.1e+02 Score=26.78 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|..
T Consensus 155 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 203 (249)
T PRK14253 155 CIARTIAMEP--DVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHS 203 (249)
T ss_pred HHHHHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 5566665554 79999999999999999999988888765 5778888777
No 239
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=29.45 E-value=1.1e+02 Score=26.34 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+. ..|+++|.+
T Consensus 151 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 151 CLARALANEP--EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence 4455555443 799999999999999999999888877665 777777777
No 240
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.32 E-value=1.1e+02 Score=27.62 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.|||.|+-+..-|+..++.+.+++....+ +..|++++.+
T Consensus 171 ~LAraL~~~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~ 219 (274)
T PRK14265 171 CIARAIAMK--PDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN 219 (274)
T ss_pred HHHHHHhhC--CCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 444454433 379999999999999999999998888765 6778888777
No 241
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.17 E-value=2.7e+02 Score=30.31 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=43.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+....|+|.|+-.-.-|+..+..+.+++....+.|..|++++.+
T Consensus 497 ~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 497 RLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 5666666665568999999998889999999999998888889999999887
No 242
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.96 E-value=1.1e+02 Score=26.77 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 156 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~ 204 (250)
T PRK14262 156 CIARALAVEP--EVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204 (250)
T ss_pred HHHHHHhCCC--CEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCC
Confidence 5555555554 79999999999999999999888887765 6777788777
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=28.90 E-value=1e+02 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 151 ~iA~al~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 151 EIAKALNKQ--ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred HHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 555555555 47999999999999999999998888777778889999888
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=28.68 E-value=1.1e+02 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=38.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ +..++++|.+
T Consensus 160 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 208 (226)
T cd03248 160 AIARALIRNP--QVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHR 208 (226)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 5555555444 79999999999999999999888887655 6778888877
No 245
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=28.48 E-value=1.7e+02 Score=26.60 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHhcC-CccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chh--cccccccEEEEeecCC
Q 048626 155 HVEVAHQRM-AVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQG--NLGQLTGVAAILRFPL 225 (260)
Q Consensus 155 eV~~A~e~G-AVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Ge--qL~~lGGIAAILRypi 225 (260)
-|..|++.| .|..++++.... .+..++...+...|..++.+|.. .-+ .-....||+|...-+-
T Consensus 29 ~v~~al~~~~~i~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~ 95 (260)
T COG0566 29 AVLEALASGPKIVRILVTEGRL--------PRFEELLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRR 95 (260)
T ss_pred HHHHHHhcCCCceEEEEecccc--------hhHHHHHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEeccc
Confidence 899999999 999999998744 34778899999999999999988 111 1245779999885443
No 246
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.48 E-value=1.1e+02 Score=26.85 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=38.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 158 ~laral~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~ 206 (252)
T PRK14256 158 CIARTIAVKP--EVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206 (252)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECC
Confidence 4555554444 79999999999999999999888888765 5677777777
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.45 E-value=1.2e+02 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..++++|..
T Consensus 158 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 206 (252)
T PRK14272 158 CIARALAVEP--EILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHN 206 (252)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 5555555555 79999999999999999999888888764 6777777777
No 248
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=28.39 E-value=1.1e+02 Score=30.05 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 150 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 150 EIAKALARNA--RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred HHHHHHHhCC--CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5566666555 7999999999999999999998888776678899999888
No 249
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=28.27 E-value=2.1e+02 Score=27.68 Aligned_cols=104 Identities=11% Similarity=-0.015 Sum_probs=61.7
Q ss_pred cEEEE-cCcccHHHHHHHHHHHH---HHH---hhhh--HHHHHHHHHHHHhHHHHHHHHHhcCCccEEEEecCCccCcch
Q 048626 110 RCAEI-SPGFTENQCHLHLLLEA---EEV---LYAS--SVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAI 180 (260)
Q Consensus 110 k~III-GPGf~k~~f~~yl~~~~---~Ev---L~~~--~v~~~l~~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~ 180 (260)
+.++| |.|.....+.+.+.... .++ +.+. .....+.+...... .+..+.+....++.++|+.....
T Consensus 126 rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~---- 200 (456)
T TIGR03022 126 RPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQ---- 200 (456)
T ss_pred ceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCcc----
Confidence 45777 99988888887775421 111 1110 00001111111111 24556666677899998876432
Q ss_pred hhHHHHHHHHHHHHhcCC-EEEEEcCC-----chhcccccccEEEE
Q 048626 181 ATRKKYVDLVNSVKDSGG-TAHVFSSM-----SQGNLGQLTGVAAI 220 (260)
Q Consensus 181 ~~R~~~~~l~e~v~~~Gg-~V~I~Ss~-----~GeqL~~lGGIAAI 220 (260)
+....++++.+++.|. .|.++|+. .......+||+..+
T Consensus 201 --~~~~~~ll~~l~~~~v~~V~~vP~~~e~~~~~~~~~~~~~~~~~ 244 (456)
T TIGR03022 201 --AEDMARLVRKLGALHFRNVLIVPSLFGLPNLWISPRFIGGVLGL 244 (456)
T ss_pred --HHHHHHHHHHHHhCCCeEEEEeCcccccccccceeeeeCCeeEE
Confidence 3456788889999999 99999986 22344667887655
No 250
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=28.22 E-value=1.1e+02 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+.|+.|+++|.+
T Consensus 153 aLArAL~~~P--~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd 202 (549)
T PRK13545 153 GFAISVHINP--DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202 (549)
T ss_pred HHHHHHHhCC--CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 5555665554 7999999999999999999988888877778899999888
No 251
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.19 E-value=1.2e+02 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=37.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 159 ~laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 207 (253)
T PRK14267 159 VIARALAMKP--KILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHS 207 (253)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 4445554443 89999999999999999998888887754 6778888777
No 252
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=28.06 E-value=1.4e+02 Score=25.54 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 143 ~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 191 (220)
T cd03263 143 SLAIALIGGP--SVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHS 191 (220)
T ss_pred HHHHHHhcCC--CEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCC
Confidence 4555555444 79999999999999999999988887765 5777777777
No 253
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=27.92 E-value=1.2e+02 Score=27.21 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=39.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+||.|+-+..-|+..++.+.+++....+ |..|+++|.+
T Consensus 173 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~ 221 (267)
T PRK14235 173 CIARAIAVSP--EVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHS 221 (267)
T ss_pred HHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcC
Confidence 5555665555 79999999999999999999888887755 6778787777
No 254
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=27.49 E-value=1.2e+02 Score=30.10 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+ -.||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 150 ~la~aL~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 150 EILRGLMRD--SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred HHHHHHHcC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555555554 47999999999999999999998888776678888888887
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=27.43 E-value=4.6e+02 Score=24.43 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=24.9
Q ss_pred EEEEecCCccC-cchhhHHHHHHHHHHHHhcCCEEEEEcCC-chhccc
Q 048626 167 TLHITDDLFRN-TAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQGNLG 212 (260)
Q Consensus 167 tLLIsD~l~r~-~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~GeqL~ 212 (260)
.|||.|++--. .+.-.|..+...+-..+-....-.||+|+ +.++|.
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 47777887533 23334544444332333235677777777 555553
No 256
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=27.37 E-value=1.2e+02 Score=27.03 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+||.|+-+..-|+..+..+.+++....+ |..|+++|.+
T Consensus 173 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 221 (267)
T PRK14237 173 CIARAIAVKP--DILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHN 221 (267)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 5566666655 79999999999999999999998888864 7778888776
No 257
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=27.35 E-value=1.3e+02 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHhcCCEEEEEcCC----chhcccccccEEEEeecCC
Q 048626 189 LVNSVKDSGGTAHVFSSM----SQGNLGQLTGVAAILRFPL 225 (260)
Q Consensus 189 l~e~v~~~Gg~V~I~Ss~----~GeqL~~lGGIAAILRypi 225 (260)
....+++.||+++..... .| ..-.....|++||-
T Consensus 11 ~~~~l~~~GG~~l~~~~~~~~leG---~~~~~~~viieFPs 48 (65)
T PF07045_consen 11 VPPILEKYGGRVLARGGEPEVLEG---DWDPDRVVIIEFPS 48 (65)
T ss_dssp HHHHHHHTT-EEEEECEEEEEEES---T-SSSEEEEEEESS
T ss_pred HHHHHHHcCCEEEEECCceeEEec---CCCCCeEEEEECCC
Confidence 555677899998887444 66 23346889999985
No 258
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=27.11 E-value=1.3e+02 Score=26.88 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+++.|+-+..-|+..|..+.+++.... +.|..|+++|.+
T Consensus 125 ~iaraL~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 125 AIAACLSKDA--DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555555544 8999999999999999999888777654 468888888887
No 259
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=26.86 E-value=1.2e+02 Score=28.51 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=39.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..|+.+.+++....+ .|..|+++|.+
T Consensus 141 alAraL~~~p--~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 141 AIGRALLSSP--RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred HHHHHHHcCC--CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5666665554 79999999999999999998887776654 47888888877
No 260
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.56 E-value=1.3e+02 Score=26.68 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+..-|+..++.+.+++.... +.|..++++|.+
T Consensus 160 ~laral~~~p--~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~ 210 (261)
T PRK14258 160 CIARALAVKP--KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210 (261)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 5555555554 8999999999999999999888777654 458888888887
No 261
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=26.49 E-value=1.8e+02 Score=27.92 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..|+.+.+++.... +.|..|+++|.+
T Consensus 139 ~lARAL~~~p--~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd 189 (363)
T TIGR01186 139 GLARALAAEP--DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 (363)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6677776665 8999999999999999999888776654 458888888888
No 262
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.43 E-value=1.3e+02 Score=26.87 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+ |..++++|..
T Consensus 159 ~laral~~~p--~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~ 207 (261)
T PRK14263 159 CIARAIATEP--EVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHN 207 (261)
T ss_pred HHHHHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 5555554433 79999999999999999999998888754 6778787777
No 263
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=26.41 E-value=1.6e+02 Score=25.01 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=33.8
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+++.|+....-|+..+..+.+++....+.|..++++|..
T Consensus 118 ~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 118 PFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 7888999999999998988888887776668888888887
No 264
>PRK10864 putative methyltransferase; Provisional
Probab=26.40 E-value=1.8e+02 Score=27.92 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=44.2
Q ss_pred HHHHHHhc--CCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chh--cccccccEEEEeecC
Q 048626 155 HVEVAHQR--MAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQG--NLGQLTGVAAILRFP 224 (260)
Q Consensus 155 eV~~A~e~--GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Ge--qL~~lGGIAAILRyp 224 (260)
.|..|+.. .+|..|+++.+.. .++.+++..+.+.+..+++++.. --+ ....-.||+|+.+-+
T Consensus 116 aV~ealk~~~~~i~~l~~~~~~~--------~~~~~il~~~~~~~~~v~~V~~~~l~kls~~~~hqGV~A~v~~~ 182 (346)
T PRK10864 116 ACQALFQSRPEAIVRAWFIQSVT--------PRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKR 182 (346)
T ss_pred HHHHHHhCCCCceeEEEEecCcc--------HHHHHHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEeCC
Confidence 78888875 5789999987631 13566777777788899999877 111 124678999999854
No 265
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=26.37 E-value=1.4e+02 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=38.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 158 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~ 206 (258)
T PRK14241 158 CIARAIAVEP--DVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206 (258)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 4555555543 89999999999999999999998888754 6778888877
No 266
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=26.35 E-value=1.3e+02 Score=28.02 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..|+.+.+++.... +.|..++++|.+
T Consensus 110 alaraL~~~p--~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 110 ALARALVFKP--KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHhCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555554 7999999999999999999887776654 458888888877
No 267
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=26.18 E-value=1.3e+02 Score=28.26 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+|+.|+-+..-|+..+..+.+++.... +.|..|+++|.+
T Consensus 150 ~lAraL~~~--p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 150 AIARALASN--PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHHcC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 555555554 37999999999999999999888887764 458888888887
No 268
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.96 E-value=1.5e+02 Score=26.07 Aligned_cols=49 Identities=6% Similarity=0.023 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+|+.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 158 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 206 (252)
T PRK14255 158 CIARVLAVKP--DVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206 (252)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECC
Confidence 5555555555 79999999999999999999888887765 5788888887
No 269
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.89 E-value=1.4e+02 Score=26.98 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 173 ~LAral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~ 221 (276)
T PRK14271 173 CLARTLAVNP--EVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHN 221 (276)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 5556665555 79999999999999999998888888765 4788888877
No 270
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=25.77 E-value=2.3e+02 Score=24.29 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=29.6
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHH-h-cCC-EEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVK-D-SGG-TAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~-~-~Gg-~V~I~Ss~ 206 (260)
-.++|.|+-+..-|+..+..+.+++.... + .|+ .|++++..
T Consensus 132 p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 132 SPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 37899999999999999999888776653 3 254 44454444
No 271
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.71 E-value=1.3e+02 Score=26.75 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=39.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 174 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 222 (268)
T PRK14248 174 CIARTLAMKP--AVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHN 222 (268)
T ss_pred HHHHHHhCCC--CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeC
Confidence 5556665554 79999999999999999999888887755 6778888777
No 272
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=25.69 E-value=1.3e+02 Score=29.36 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 145 ~la~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 145 LLCQALMSEP--DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5556665544 7999999999999999999999888876678888888887
No 273
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=25.47 E-value=1.2e+02 Score=30.80 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=46.3
Q ss_pred ccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC----ch--hcc--cccccEEEEeec
Q 048626 165 VQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM----SQ--GNL--GQLTGVAAILRF 223 (260)
Q Consensus 165 VetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~----~G--eqL--~~lGGIAAILRy 223 (260)
=-.+||.|+-.|.-|+..+.++-.++...-..|..|.++||+ -| .++ -.-|-|+|.|..
T Consensus 419 ~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 419 DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 357999999999999999999888888777789999999999 22 122 356777776643
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=25.42 E-value=1.2e+02 Score=29.87 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 437 ~laral~~~p--~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 487 (520)
T TIGR03269 437 ALAQVLIKEP--RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487 (520)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 5666666554 8999999999999999999988877764 468889999888
No 275
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.35 E-value=2.2e+02 Score=21.51 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEE
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHV 202 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I 202 (260)
.+..|++.|- .+++ |.-+-. +.++..+|.+.++++|..+.|
T Consensus 78 ~~~~~l~~g~--~v~~-EKP~~~----~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 78 IAKKALEAGK--HVLV-EKPLAL----TLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTS--EEEE-ESSSSS----SHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHcCC--EEEE-EcCCcC----CHHHHHHHHHHHHHhCCEEEE
Confidence 6777788887 4433 332211 366788899999998887765
No 276
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.14 E-value=1.3e+02 Score=26.76 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 163 ~laral~~~P--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~ 211 (257)
T PRK14246 163 TIARALALKP--KVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHN 211 (257)
T ss_pred HHHHHHHcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECC
Confidence 5555555444 79999999999999999999988887765 6888888888
No 277
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=24.93 E-value=2.5e+02 Score=21.76 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHhcCCccEEEEecC--CccCcchhhHHHHHHHHHHHHhcCCEEEEEc
Q 048626 156 VEVAHQRMAVQTLHITDD--LFRNTAIATRKKYVDLVNSVKDSGGTAHVFS 204 (260)
Q Consensus 156 V~~A~e~GAVetLLIsD~--l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~S 204 (260)
..+++..|.+++|+|.+- +.|.. ..+..+++...+.|..+++++
T Consensus 57 ll~~~~~~~~d~ivv~~~~Rl~R~~-----~~~~~~~~~l~~~gi~l~~~~ 102 (137)
T cd00338 57 LLADVKAGKIDVVLVEKLDRLSRNL-----VDLLELLELLEAHGVRVVTAD 102 (137)
T ss_pred HHHHHHcCCCCEEEEEecchhhCCH-----HHHHHHHHHHHHCCCEEEEec
Confidence 334455578888877764 22321 135567777777888887775
No 278
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=24.89 E-value=1.4e+02 Score=25.57 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=37.9
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEE----EcCC-ch-hcccccc-cEEEEeecC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHV----FSSM-SQ-GNLGQLT-GVAAILRFP 224 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I----~Ss~-~G-eqL~~lG-GIAAILRyp 224 (260)
+++||-|++..+ -.-+.+.++.+++.|++|.= +.-. .| +.++..| -+-+++++.
T Consensus 108 ~~VlIVDDvitT-----G~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL~~~~ 168 (176)
T PRK13812 108 EEVVVLEDIATT-----GQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEALVTAS 168 (176)
T ss_pred CEEEEEEEeeCC-----CHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEEEeHH
Confidence 689999998865 34577899999999999763 2222 33 5566666 677777763
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=24.68 E-value=3.3e+02 Score=21.03 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=27.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+.+++..|. .++|.+..+. ++....+.+.+++.|..+.++-=.
T Consensus 62 ~~~~~l~~g~--~~vvd~~~~~------~~~r~~~~~~~~~~~~~~~~v~l~ 105 (143)
T PF13671_consen 62 AIRKALRNGN--SVVVDNTNLS------REERARLRELARKHGYPVRVVYLD 105 (143)
T ss_dssp HHHHHHHTT---EEEEESS--S------HHHHHHHHHHHHHCTEEEEEEEEC
T ss_pred HHHHHHHcCC--CceeccCcCC------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence 5667777773 3555444442 344567788888899888877443
No 280
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.63 E-value=3.1e+02 Score=20.70 Aligned_cols=50 Identities=10% Similarity=-0.073 Sum_probs=37.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL 211 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL 211 (260)
+|.+|+..|-+.-++|+.+.- +.+ ...+.+.++..+-.+....+. -|.-+
T Consensus 15 ~vlkaIk~gkakLViiA~Da~----~~~---~k~i~~~c~~~~Vpv~~~~t~~eLG~A~ 66 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAE----EHV---TKKIKELCEEKSIKIVYIDTMKELGVMC 66 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCC----HHH---HHHHHHHHHhCCCCEEEeCCHHHHHHHH
Confidence 899999999999999999865 222 345677788899999766665 45444
No 281
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=24.51 E-value=1.5e+02 Score=26.47 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 161 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~ 209 (264)
T PRK14243 161 CIARAIAVQP--EVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209 (264)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 5555555544 69999999999999999999888887765 5677777777
No 282
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.47 E-value=1.4e+02 Score=27.29 Aligned_cols=49 Identities=8% Similarity=0.029 Sum_probs=38.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.+. .+||.|+-...-|+..|+.+.+++....+ |..|++.|..
T Consensus 143 ~la~al~~~p--~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~ 191 (301)
T TIGR03522 143 GLAQALIHDP--KVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHI 191 (301)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 5555554444 79999999999999999999998888765 7777777766
No 283
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.31 E-value=1.5e+02 Score=26.90 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 192 ~LAraL~~~p--~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~ 240 (286)
T PRK14275 192 CVARTLAVEP--EILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHN 240 (286)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 5566666655 79999999999999999999888887754 5778888777
No 284
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=24.26 E-value=1.4e+02 Score=30.64 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.++++...+.|..+.++|++
T Consensus 154 ~LAraL~~~P--~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~ 203 (648)
T PRK10535 154 SIARALMNGG--QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203 (648)
T ss_pred HHHHHHhcCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 5555555543 8999999999999999999999998887778899888888
No 285
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.22 E-value=1.6e+02 Score=26.22 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..++.+.+++....+ +..|+++|.+
T Consensus 171 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~ 219 (265)
T PRK14252 171 CIARALATDP--EILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219 (265)
T ss_pred HHHHHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecC
Confidence 4555555544 79999999999999999999888888765 6788888877
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=23.97 E-value=1.4e+02 Score=29.65 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-+..-|+..++.+.+++....+ .|..|+++|.+
T Consensus 435 ~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 435 AIARALILKP--SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred HHHHHHhCCC--CEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 5555555554 89999999999999999998887777654 58889999888
No 287
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=23.89 E-value=1.4e+02 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+||.|+-+..-|+..++.+.+++....+ |..|+++|..
T Consensus 166 ~laral~~~p--~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~ 214 (257)
T cd03288 166 CLARAFVRKS--SILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHR 214 (257)
T ss_pred HHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 4555554444 79999999999999999988888887654 7888888877
No 288
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.72 E-value=1.9e+02 Score=24.84 Aligned_cols=43 Identities=9% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
+.+..+-.+.|++..+... -.++..|++.+++.|..|++++..
T Consensus 96 Dame~~~~~~iD~~vLvSg---------D~DF~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 96 EAMELIYNPNIDAVALVTR---------DADFLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred HHHHHhccCCCCEEEEEec---------cHhHHHHHHHHHHCCCEEEEEeCC
Confidence 3344443488998665432 346889999999999999999865
No 289
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=23.46 E-value=1.6e+02 Score=25.74 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..+..+.+++....+ +..|+++|.+
T Consensus 154 ~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 202 (247)
T TIGR00972 154 CIARALAVEP--EVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHN 202 (247)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecC
Confidence 5555555554 79999999999999999999888887766 4777787777
No 290
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.45 E-value=1.7e+02 Score=25.93 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=38.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..+..+.+++....+ +..|+++|.+
T Consensus 160 ~laral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 208 (259)
T PRK14260 160 CIARALAIKP--KVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHN 208 (259)
T ss_pred HHHHHHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 5555554444 79999999999999999999888887765 5778888777
No 291
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=23.40 E-value=1.3e+02 Score=29.30 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCC-EEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGG-TAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg-~V~I~Ss~ 206 (260)
.+..|+-.+ -.||+.|+-+..-|+..++.+.+++....+.|+ .|+++|.+
T Consensus 411 ~la~al~~~--p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 411 LIVRALVKH--PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred HHHHHHhcC--CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 444444433 479999999999999999999988877766664 58888877
No 292
>PRK10259 hypothetical protein; Provisional
Probab=23.39 E-value=89 Score=24.11 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCchhcccccccEEEEee
Q 048626 187 VDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILR 222 (260)
Q Consensus 187 ~~l~e~v~~~Gg~V~I~Ss~~GeqL~~lGGIAAILR 222 (260)
.+|.+.|.+.|++-+.|-+..|. +.+-|.|-|||
T Consensus 53 ~~La~KAd~~GA~~YrIi~a~~~--n~~~~tA~iYk 86 (86)
T PRK10259 53 AKLAEKAAAAGASGYSITSATNN--NKLSGTAVIYK 86 (86)
T ss_pred HHHHHHHHHcCCCEEEEEEecCC--CcEEEEEEEeC
Confidence 36999999999998877655222 77889998876
No 293
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=23.31 E-value=1.6e+02 Score=29.08 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+||.|+-+-.-|+..+..+.+++....+.|..|+++|.+
T Consensus 153 ~la~al~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 153 EIAKALNKQ--ARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred HHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 455555433 46999999999999999999998888776678888888887
No 294
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=23.21 E-value=4e+02 Score=23.21 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHH-HHHHHHHHHhc-CCEEEEEcCC
Q 048626 147 TKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKK-YVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 147 ~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~-~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
..+..|+.++..++....=..|++.|+.++..+...... ...+++...+. |+.+++++..
T Consensus 91 s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 91 STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 456777777777777544568999999977665433322 45566666666 8888777776
No 295
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=23.21 E-value=1.5e+02 Score=25.91 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=32.7
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhc-C-CEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDS-G-GTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-G-g~V~I~Ss~ 206 (260)
.+++.|+-+..-|+..+..+.+++....+. | +.++++|+.
T Consensus 150 ~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~ 191 (213)
T cd03277 150 PFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK 191 (213)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh
Confidence 689999999999999999988888777655 5 468888765
No 296
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=23.05 E-value=2.3e+02 Score=28.74 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
|+.||+-.|| .|||.|+--.--.|.+-+++..++...++.|..|++||..
T Consensus 150 EIlKaLyr~a--~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 150 EILKALYRGA--RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 9999999998 8999999655556777777888899999999999999998
No 297
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=22.75 E-value=1.7e+02 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..|..+.+++....+ .|..+++++.+
T Consensus 146 alArAL~~~P--~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 146 ALARALAVEP--QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5666665554 79999999999999999998877766554 58888888887
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=22.74 E-value=1.5e+02 Score=30.36 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++....+ .|..|+++|.+
T Consensus 473 ~iAraL~~~p--~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd 523 (623)
T PRK10261 473 CIARALALNP--KVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD 523 (623)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555554443 79999999999999999999998877654 58889999888
No 299
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=22.53 E-value=1.5e+02 Score=28.15 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..|+.+.+++.... +.|..++++|.+
T Consensus 143 aLAraL~~~P--~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 143 AIGRTLVAEP--SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 5566665554 8999999999999999999887777664 458889888887
No 300
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=22.51 E-value=1.6e+02 Score=27.72 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=39.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..|+.+.+++....+ .|..++++|.+
T Consensus 138 alaraL~~~p--~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 138 AIGRALLTAP--ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred HHHHHHHcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5566666554 79999999999999999998887776654 47888888876
No 301
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=22.41 E-value=2.7e+02 Score=28.26 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
++.+|+..+| .|||.|+---+-+..+-+.+.+++...++.|..+++||..
T Consensus 155 eIArAl~~~a--rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr 204 (500)
T COG1129 155 EIARALSFDA--RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204 (500)
T ss_pred HHHHHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 9999999866 4999999776666666777889999999999999999997
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=22.33 E-value=1.6e+02 Score=29.04 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+-.-|+..++.+.+++... ++.|..|+++|.+
T Consensus 178 ~iA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 178 VLARQLAKEP--FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred HHHHHHhcCC--CEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5555655544 699999999999999999988887776 5568889999888
No 303
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=22.09 E-value=2.1e+02 Score=24.56 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=33.2
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+++.|+-...-|+..+..+.+++....+ +..|++++..
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~ 175 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHR 175 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence 68999999999999999998888888765 6778888877
No 304
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=22.03 E-value=1.7e+02 Score=25.81 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=33.2
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+++.|+-...-|+..++.+.+++....+ |+.|+++|..
T Consensus 190 ~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~ 228 (251)
T cd03273 190 PMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLK 228 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 69999999999999999988888877754 7888888887
No 305
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=21.56 E-value=1.5e+02 Score=25.39 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=34.8
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccE
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGI 217 (260)
.+|+||.--...+ ...+.+..+.+++.|.+|+.+--. .+.+|+.++|-
T Consensus 112 ~IllTDG~s~~~~---~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~ 161 (192)
T cd01473 112 TMLFTDGNDTSAS---KKELQDISLLYKEENVKLLVVGVGAASENKLKLLAGC 161 (192)
T ss_pred EEEEecCCCCCcc---hhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcCC
Confidence 3778887553321 234667788899999999999655 66788888885
No 306
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=21.39 E-value=1.7e+02 Score=28.48 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..|+.+.+++.... +.|..|+++|.+
T Consensus 174 ~LArAL~~~P--~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 174 GLARALAINP--DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred HHHHHHhcCC--CEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5556665554 7999999999999999999888777664 468888888887
No 307
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.24 E-value=2e+02 Score=24.98 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=38.5
Q ss_pred HHHHHHhcCCc--cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAV--QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAV--etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.... -.+++.|+-...-|+..++.+.+++.... .++.++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~ 189 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLR 189 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc
Confidence 45555543322 26999999999999999999998888875 46788888876
No 308
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=21.13 E-value=1.8e+02 Score=27.71 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=33.5
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhc--CCEEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDS--GGTAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~--Gg~V~I~Ss~ 206 (260)
-.||+.|+-+..-|+..|+.+..++....+. |..+++++.+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4799999999999999999988777665544 7888888877
No 309
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=20.99 E-value=1.8e+02 Score=28.11 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=39.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHh-cCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKD-SGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~-~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..|+.+.+++....+ .|..++++|.+
T Consensus 174 ~LARALa~~P--~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 174 GLARAFAMDA--DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred HHHHHHhcCC--CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5566665544 79999999999999999998876666554 58888888887
No 310
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=20.66 E-value=5.4e+02 Score=22.53 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH--HhcCCEEEEEcCCchhcccccccEEEEeecCCCCCCCCc
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV--KDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKND 232 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v--~~~Gg~V~I~Ss~~GeqL~~lGGIAAILRypi~~l~~~~ 232 (260)
.+.+++... ..|||.|++... ..++++.... ...|++|+|-|... .-...+++- -..|.++.|++++
T Consensus 93 ~l~~~L~~~--~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~--~~~~~l~~L~~~e 161 (287)
T PF00931_consen 93 QLRELLKDK--RCLLVLDDVWDE------EDLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGT--DKVIELEPLSEEE 161 (287)
T ss_dssp HHHHHHCCT--SEEEEEEEE-SH------HHH-------HCHHSS-EEEEEESCG-GGGTTHHSC--EEEEECSS--HHH
T ss_pred cchhhhccc--cceeeeeeeccc------cccccccccccccccccccccccccc-ccccccccc--ccccccccccccc
Confidence 667777776 999999997632 2444444332 34578877766551 122333332 4457777777766
Q ss_pred ccccc
Q 048626 233 KCSMK 237 (260)
Q Consensus 233 ~~~~~ 237 (260)
.-+.=
T Consensus 162 a~~L~ 166 (287)
T PF00931_consen 162 ALELF 166 (287)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 54443
No 311
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.31 E-value=1.2e+02 Score=27.68 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEc
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFS 204 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~S 204 (260)
.+..|++.+-+|.+.||.+ =+++++.|++.|++|.+.-
T Consensus 34 ~I~aA~ns~~fd~VviSsD------------s~~Il~~A~~ygak~~~~R 71 (228)
T COG1083 34 TIEAALNSKLFDKVVISSD------------SEEILEEAKKYGAKVFLKR 71 (228)
T ss_pred HHHHHhcCCccceEEEcCC------------cHHHHHHHHHhCccccccC
Confidence 6788999999999999975 3579999999999997653
No 312
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.29 E-value=3.4e+02 Score=24.98 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=53.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHH-HHHHHHHhcCCEEEEEcCC------chhccccc----ccEEEEeec
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYV-DLVNSVKDSGGTAHVFSSM------SQGNLGQL----TGVAAILRF 223 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~-~l~e~v~~~Gg~V~I~Ss~------~GeqL~~l----GGIAAILRy 223 (260)
.+..|+-.. -.||..|+-|-.-|.-+|..+. ++.+..++.+-.|..|+.+ -+.++--| |-|.++++-
T Consensus 140 aiARAL~~~--P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i 217 (248)
T COG1116 140 AIARALATR--PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEI 217 (248)
T ss_pred HHHHHHhcC--CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEec
Confidence 445555333 4799999999999999998865 6888999999999999988 33444222 558899999
Q ss_pred CCCC
Q 048626 224 PLPN 227 (260)
Q Consensus 224 pi~~ 227 (260)
++|.
T Consensus 218 ~l~r 221 (248)
T COG1116 218 DLPR 221 (248)
T ss_pred CCCC
Confidence 8873
No 313
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=20.05 E-value=1.8e+02 Score=26.50 Aligned_cols=49 Identities=8% Similarity=-0.060 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.++ .+|+.|+-+.+-|+.+++.+.+++.... .|..|++++..
T Consensus 148 ~LaRall~~p--~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~ 196 (275)
T cd03289 148 CLARSVLSKA--KILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHR 196 (275)
T ss_pred HHHHHHhcCC--CEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECC
Confidence 5566666665 8999999999999999999888888765 47888888887
No 314
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=20.05 E-value=2e+02 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=37.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-. =-.||+.|+-+..-|+..|+.+.+++.... +.|..+++++.+
T Consensus 144 alARAL~~--~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 144 AMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred HHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44444433 347999999999999999999887666655 458889888887
No 315
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.02 E-value=4.4e+02 Score=20.67 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=38.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhccc-ccccEEEEe
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLG-QLTGVAAIL 221 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~-~lGGIAAIL 221 (260)
.|.+|+..|.+.-++++++.- +.+++++..+ ++..+..++.+.+. -|.-+. ..=+++||.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s----~~~kkki~~~---~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~ 86 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDIS----ENSKNKFKNY---CNKYNIPYIEGYSKEELGNAIGRDEIKILGVK 86 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCC----HhHHHHHHHH---HHHcCCCEEEecCHHHHHHHhCCCCeEEEEEe
Confidence 899999999999999999866 2346655544 55567777655333 443332 233455554
No 316
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.00 E-value=2.1e+02 Score=26.00 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=39.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-+..-|+..++.+.+++....+ ++.|+++|.+
T Consensus 190 ~LAraL~~~p--~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~ 238 (285)
T PRK14254 190 CIARAIAPDP--EVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN 238 (285)
T ss_pred HHHHHHHcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 5666665555 79999999999999999998888887765 3678888777
Done!