Query 048626
Match_columns 260
No_of_seqs 143 out of 504
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.6E-64 5.6E-69 480.2 15.4 232 1-235 1-380 (390)
2 2vgn_A DOM34; translation term 100.0 4.6E-60 1.6E-64 449.1 24.0 228 1-234 1-385 (386)
3 3obw_A Protein pelota homolog; 100.0 5.3E-59 1.8E-63 439.0 21.5 214 1-226 21-364 (364)
4 3oby_A Protein pelota homolog; 100.0 1.7E-59 5.8E-64 440.6 15.4 216 1-229 1-346 (352)
5 3j15_A Protein pelota; ribosom 100.0 1.3E-59 4.4E-64 442.0 12.6 217 1-226 1-357 (357)
6 2qi2_A Pelota, cell division p 100.0 5.8E-57 2E-61 422.7 18.2 212 1-229 1-342 (347)
7 3agj_B Protein pelota homolog; 100.0 2.9E-56 1E-60 419.2 22.0 216 1-226 3-352 (358)
8 1x52_A Pelota homolog, CGI-17; 99.9 2.2E-28 7.7E-33 198.7 5.6 98 134-231 3-123 (124)
9 1dt9_A ERF1, protein (eukaryot 99.9 1.5E-30 5E-35 249.8 -9.5 134 91-226 200-418 (437)
10 3e20_C Eukaryotic peptide chai 99.9 5.8E-27 2E-31 225.6 7.4 139 91-231 205-432 (441)
11 3agk_A Peptide chain release f 99.9 5.9E-25 2E-29 206.8 8.7 126 91-227 197-372 (373)
12 3ir9_A Peptide chain release f 99.9 1.1E-21 3.6E-26 166.6 9.4 93 132-226 11-165 (166)
13 1ipa_A RRMH, RNA 2'-O-ribose m 81.4 2.9 0.0001 37.1 6.5 69 155-230 36-109 (274)
14 1gz0_A Hypothetical tRNA/RRNA 69.0 6.2 0.00021 34.4 5.2 66 152-224 17-87 (253)
15 3nk6_A 23S rRNA methyltransfer 67.0 4.7 0.00016 35.8 4.0 66 155-229 42-112 (277)
16 3v7e_A Ribosome-associated pro 63.7 7.8 0.00027 28.0 4.0 60 145-211 8-69 (82)
17 3j21_Z 50S ribosomal protein L 50.7 57 0.002 23.9 7.1 67 148-221 15-86 (99)
18 3on1_A BH2414 protein; structu 50.2 54 0.0018 24.2 6.9 63 152-221 22-87 (101)
19 3cpq_A 50S ribosomal protein L 49.9 59 0.002 24.4 7.2 69 150-225 23-96 (110)
20 1x7o_A Avirb, rRNA methyltrans 49.6 27 0.00092 31.0 5.9 67 155-230 48-119 (287)
21 1g6h_A High-affinity branched- 48.8 26 0.0009 30.0 5.6 50 155-206 163-212 (257)
22 2pcj_A ABC transporter, lipopr 48.4 28 0.00095 29.2 5.6 50 155-206 150-199 (224)
23 1f2t_B RAD50 ABC-ATPase; DNA d 47.8 27 0.00093 27.6 5.1 40 167-206 83-122 (148)
24 3v7q_A Probable ribosomal prot 46.9 76 0.0026 23.4 7.2 62 153-221 24-88 (101)
25 1ji0_A ABC transporter; ATP bi 43.8 29 0.00099 29.4 5.0 50 155-206 149-198 (240)
26 1vpl_A ABC transporter, ATP-bi 43.7 33 0.0011 29.6 5.4 50 155-206 156-205 (256)
27 1b0u_A Histidine permease; ABC 43.5 30 0.001 29.8 5.1 50 155-206 163-212 (262)
28 2d2e_A SUFC protein; ABC-ATPas 43.5 29 0.00099 29.6 5.0 50 155-206 153-202 (250)
29 2yz2_A Putative ABC transporte 42.7 37 0.0013 29.3 5.6 50 155-206 148-197 (266)
30 2olj_A Amino acid ABC transpor 42.7 37 0.0013 29.4 5.6 50 155-206 169-218 (263)
31 2qi9_C Vitamin B12 import ATP- 42.2 41 0.0014 28.8 5.8 52 155-206 136-192 (249)
32 2aif_A Ribosomal protein L7A; 42.2 70 0.0024 25.1 6.7 67 149-221 42-112 (135)
33 2nq2_C Hypothetical ABC transp 42.0 41 0.0014 28.9 5.7 50 155-206 138-188 (253)
34 1sgw_A Putative ABC transporte 39.1 28 0.00096 29.2 4.1 50 155-206 143-192 (214)
35 4g1u_C Hemin import ATP-bindin 37.1 52 0.0018 28.4 5.7 52 155-206 151-207 (266)
36 2zu0_C Probable ATP-dependent 36.3 34 0.0012 29.6 4.3 50 155-206 174-223 (267)
37 3tif_A Uncharacterized ABC tra 35.6 51 0.0017 27.8 5.2 50 155-206 155-205 (235)
38 3gdz_A Arginyl-tRNA synthetase 35.6 24 0.00083 26.7 2.8 26 94-119 59-86 (109)
39 3gfo_A Cobalt import ATP-bindi 35.3 47 0.0016 29.0 5.1 50 155-206 153-203 (275)
40 4a18_G RPL30; ribosome, eukary 34.7 1.2E+02 0.004 22.4 6.6 69 150-225 24-97 (104)
41 2ff7_A Alpha-hemolysin translo 34.5 65 0.0022 27.4 5.8 49 155-206 155-203 (247)
42 2ygr_A Uvrabc system protein A 34.5 1.3E+02 0.0046 31.4 9.0 52 155-206 531-582 (993)
43 3iz5_f 60S ribosomal protein L 32.9 1.2E+02 0.0042 22.9 6.6 66 149-221 27-97 (112)
44 3ec2_A DNA replication protein 31.1 1.8E+02 0.0062 22.4 12.3 40 167-206 102-142 (180)
45 2vf7_A UVRA2, excinuclease ABC 31.0 80 0.0027 32.4 6.6 52 155-206 389-440 (842)
46 2ghi_A Transport protein; mult 30.5 70 0.0024 27.4 5.4 49 155-206 165-213 (260)
47 2r6f_A Excinuclease ABC subuni 30.5 2E+02 0.0069 30.0 9.5 52 155-206 514-565 (972)
48 3qf7_A RAD50; ABC-ATPase, ATPa 29.8 60 0.002 29.3 4.9 40 167-206 305-344 (365)
49 1e69_A Chromosome segregation 29.4 1.6E+02 0.0055 25.6 7.7 72 155-227 229-310 (322)
50 2ale_A SNU13, NHP2/L7AE family 28.9 58 0.002 25.6 4.2 68 148-221 32-103 (134)
51 1w41_A 50S ribosomal protein L 28.4 1.7E+02 0.0059 21.3 7.2 71 148-225 16-91 (101)
52 3qkt_A DNA double-strand break 28.3 70 0.0024 28.3 5.1 41 166-206 273-313 (339)
53 3prh_A Tryptophanyl-tRNA synth 27.6 75 0.0026 29.6 5.3 49 115-163 298-359 (388)
54 2ihy_A ABC transporter, ATP-bi 27.3 49 0.0017 28.8 3.8 50 155-206 171-222 (279)
55 2ixe_A Antigen peptide transpo 27.1 74 0.0025 27.5 4.9 50 155-206 166-216 (271)
56 4aby_A DNA repair protein RECN 25.6 96 0.0033 27.7 5.5 39 167-206 317-355 (415)
57 1yqt_A RNAse L inhibitor; ATP- 25.1 92 0.0032 29.8 5.6 50 155-206 168-217 (538)
58 2onk_A Molybdate/tungstate ABC 25.1 51 0.0017 28.0 3.4 50 155-206 136-186 (240)
59 2vf7_A UVRA2, excinuclease ABC 24.9 92 0.0032 31.9 5.8 41 166-206 752-792 (842)
60 3ux8_A Excinuclease ABC, A sub 24.4 1.5E+02 0.005 28.9 6.9 52 155-206 212-263 (670)
61 2lbw_A H/ACA ribonucleoprotein 24.3 1.2E+02 0.0041 23.1 5.2 68 148-221 20-91 (121)
62 3tui_C Methionine import ATP-b 24.3 89 0.0031 28.7 5.1 50 155-206 173-223 (366)
63 3nkl_A UDP-D-quinovosamine 4-d 24.3 1E+02 0.0035 22.9 4.7 91 109-206 4-101 (141)
64 3g13_A Putative conjugative tr 24.2 90 0.0031 24.5 4.6 47 155-206 66-114 (169)
65 1mv5_A LMRA, multidrug resista 24.1 60 0.002 27.4 3.6 49 155-206 149-197 (243)
66 1yqt_A RNAse L inhibitor; ATP- 23.2 93 0.0032 29.8 5.2 50 155-206 411-461 (538)
67 3ux8_A Excinuclease ABC, A sub 23.2 1.1E+02 0.0037 29.8 5.8 52 155-206 553-605 (670)
68 3bk7_A ABC transporter ATP-bin 22.5 1.1E+02 0.0037 29.9 5.5 50 155-206 238-287 (607)
69 3j16_B RLI1P; ribosome recycli 22.0 1.3E+02 0.0045 29.4 6.0 50 155-206 231-280 (608)
70 3u5e_c L32, RP73, YL38, 60S ri 21.8 1.8E+02 0.0061 21.5 5.5 67 150-223 24-95 (105)
71 3pih_A Uvrabc system protein A 21.6 1.2E+02 0.004 31.5 5.8 40 167-206 828-867 (916)
72 2xzm_U Ribosomal protein L7AE 21.2 1.2E+02 0.0042 23.4 4.7 58 148-211 24-83 (126)
73 3ozx_A RNAse L inhibitor; ATP 21.1 1.2E+02 0.0042 29.0 5.6 50 155-206 395-445 (538)
74 2ehv_A Hypothetical protein PH 20.8 1.2E+02 0.004 24.5 4.8 50 156-206 127-181 (251)
75 2r6f_A Excinuclease ABC subuni 20.4 1.3E+02 0.0043 31.5 5.8 52 155-206 855-907 (972)
76 3d31_A Sulfate/molybdate ABC t 20.3 1.2E+02 0.0042 27.4 5.1 50 155-206 137-187 (348)
77 3j16_B RLI1P; ribosome recycli 20.2 1.2E+02 0.0041 29.6 5.4 50 155-206 477-527 (608)
78 2i6d_A RNA methyltransferase, 20.2 2.6E+02 0.0088 24.0 7.0 62 155-230 35-100 (257)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-64 Score=480.23 Aligned_cols=232 Identities=31% Similarity=0.501 Sum_probs=187.8
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
|||+++++.++++|+|+|+||++||||||||||++||.|+|+|+|||++++++|+++++|++|+|+|+ ||+++|||+
T Consensus 1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~---Ve~ief~~~ 77 (390)
T 3mca_B 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRIL---VENMDFDTK 77 (390)
T ss_dssp -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EE---CCCEEECTT
T ss_pred CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEE---EEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999888988999999999999 999999999
Q ss_pred CCe-----eeccc----------------cH-------------------------------------------------
Q 048626 81 GSI-----KNILE----------------NE------------------------------------------------- 90 (260)
Q Consensus 81 ~~~-----~ni~e----------------~~------------------------------------------------- 90 (260)
+++ +++.+ |.
T Consensus 78 ~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~ 157 (390)
T 3mca_B 78 AAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMT 157 (390)
T ss_dssp SSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCE
T ss_pred CCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEE
Confidence 887 11111 11
Q ss_pred --------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------
Q 048626 91 --------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------ 131 (260)
Q Consensus 91 --------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------ 131 (260)
+||++|++++.+++++.++++||| ||||+|++|++||++++
T Consensus 158 ~~~~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~ 237 (390)
T 3mca_B 158 ILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSK 237 (390)
T ss_dssp EEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHG
T ss_pred EEEEEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhc
Confidence 899999999999999999999999 99999999999998741
Q ss_pred ----------------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCC
Q 048626 132 ----------------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL 174 (260)
Q Consensus 132 ----------------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l 174 (260)
+|+|++|+++++++++++++|.+ +|.+|+++|||+||||+|++
T Consensus 238 ~k~~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l 317 (390)
T 3mca_B 238 NKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317 (390)
T ss_dssp GGEEEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETT
T ss_pred CeEEEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEeccc
Confidence 89999999999999999999998 99999999999999999999
Q ss_pred ccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCCcccc
Q 048626 175 FRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKNDKCS 235 (260)
Q Consensus 175 ~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~~~~~ 235 (260)
+|+.+++.|+++.+|++.|+++||+|+|||++ +|+||++|||||||||||+|+|||+++++
T Consensus 318 ~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~lgGiaAiLRy~i~~~~~~~~~~ 380 (390)
T 3mca_B 318 FRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPVDEEDISEDEE 380 (390)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHTTSEEEEBSSCCCCCCCCCCC-
T ss_pred ccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcCCcEEEEEeccCCccchhhhcc
Confidence 99999999999999999999999999999998 99999999999999999999999887755
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=4.6e-60 Score=449.06 Aligned_cols=228 Identities=26% Similarity=0.442 Sum_probs=199.4
Q ss_pred Ceeeeee---cCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeec
Q 048626 1 MRIVRKD---LIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLY 77 (260)
Q Consensus 1 MKi~~~~---~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vef 77 (260)
|||++++ +++ ++|+|+|+||++||||||||||++||.|+|+|+|||++ +++|+ +++|++++|+|+ ||+++|
T Consensus 1 Mki~~~~~~~~~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~---Ve~~~f 74 (386)
T 2vgn_A 1 MKVISLKKDSFNK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIK---VISEDF 74 (386)
T ss_dssp CEEEEEEECSSCT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEE---EEEEEE
T ss_pred CeeeeeccccccC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEE---EEEEEe
Confidence 9999999 777 88999999999999999999999999999999999998 67778 899999999999 999999
Q ss_pred ccCCCe-----eeccc-----------cH---------------------------------------------------
Q 048626 78 DKEGSI-----KNILE-----------NE--------------------------------------------------- 90 (260)
Q Consensus 78 d~~~~~-----~ni~e-----------~~--------------------------------------------------- 90 (260)
||++++ .++.+ |.
T Consensus 75 ~~~~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i 154 (386)
T 2vgn_A 75 DMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHV 154 (386)
T ss_dssp ETTTTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEE
Confidence 999887 22211 11
Q ss_pred -----------------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH---
Q 048626 91 -----------------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA--- 131 (260)
Q Consensus 91 -----------------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~--- 131 (260)
+||++|++++.+++++.++++||| ||||+|++|++||.+++
T Consensus 155 ~~l~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~ 234 (386)
T 2vgn_A 155 CLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEE 234 (386)
T ss_dssp EEECSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999 99999999999988631
Q ss_pred -------------------------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCc
Q 048626 132 -------------------------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAV 165 (260)
Q Consensus 132 -------------------------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAV 165 (260)
+|+|++|+++++++++++++|.+ +|.+|+++|||
T Consensus 235 ~~~~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAV 314 (386)
T 2vgn_A 235 HNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAI 314 (386)
T ss_dssp TCHHHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCE
T ss_pred ccchhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCc
Confidence 99999999999999999999998 99999999999
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCCccc
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKNDKC 234 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~~~~ 234 (260)
+||||+|+++|++|+..|+++++|++.|+++||+|+|||++ +|+||++|||||||||||+++|||+|++
T Consensus 315 etLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL~~lgGIAAiLRy~i~~~~~~~~~ 385 (386)
T 2vgn_A 315 SYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDLDEDDGE 385 (386)
T ss_dssp EEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHHTTTEEEEESSCCCCSSCC---
T ss_pred EEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhHhccCcEEEEEecCCCcccccccc
Confidence 99999999999999999999999999999999999999999 9999999999999999999999887765
No 3
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.3e-59 Score=438.95 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=192.7
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
|||++++. ++|+|+|+||++||||||||||++||.|+|+|+|+|+. |+ +++|++++|+|+ ||+++|||+
T Consensus 21 Mki~~~~~---~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~---Ve~ief~~~ 89 (364)
T 3obw_A 21 MRILEFDE---KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILK---VDYTEFQEF 89 (364)
T ss_dssp ------CC---CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEE---EEEEEEETT
T ss_pred cEEEEecC---CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEE---EEEEEecCC
Confidence 99999884 88999999999999999999999999999999999973 33 579999999999 999999999
Q ss_pred CCe-----eecccc-----------------H------------------------------------------------
Q 048626 81 GSI-----KNILEN-----------------E------------------------------------------------ 90 (260)
Q Consensus 81 ~~~-----~ni~e~-----------------~------------------------------------------------ 90 (260)
+++ +++.++ .
T Consensus 90 ~~~Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~~~~~~~vv~d~g~A~i~~l~~~~~~ 169 (364)
T 3obw_A 90 TNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIK 169 (364)
T ss_dssp TTEEEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC--------------CCCEEEEEEETTEEEEEEECSSCEE
T ss_pred CCEEEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCcCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 988 333211 1
Q ss_pred ------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------------HH
Q 048626 91 ------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------------EE 133 (260)
Q Consensus 91 ------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------------~E 133 (260)
+||++|++++.+++++.++++||| ||||+|++|++||+++. +|
T Consensus 170 ~~~~i~~~iPkK~~~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~~~~i~~vd~s~g~~~gl~E 249 (364)
T 3obw_A 170 ILSEKSLRPLNEEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHE 249 (364)
T ss_dssp CCCEEECGGGCSSTTHHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTCCSEEEEECCSCSSHHHHHH
T ss_pred EEEEEEeeCccchhHHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhhcCeEEEEeCCCCchHhHHH
Confidence 999999999999999999999999 99999999999998643 99
Q ss_pred HhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHH
Q 048626 134 VLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNS 192 (260)
Q Consensus 134 vL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~ 192 (260)
+|++|+++++++++++++|.+ +|.+|+++|||+||||+|+++|+.++ +|+.+++|++.
T Consensus 250 vl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~-~r~~~~~l~e~ 328 (364)
T 3obw_A 250 VLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQ-ERLTIERMLED 328 (364)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHH-HHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccc-hHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999988 89999999999
Q ss_pred HHhcCCEEEEEcCC--chhcccccccEEEEeecCCC
Q 048626 193 VKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLP 226 (260)
Q Consensus 193 v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~ 226 (260)
|+++||+|+|||++ +|+||++|||||||||||+|
T Consensus 329 v~~~Gg~V~ivs~~~e~G~qL~~lGGIAAiLRy~i~ 364 (364)
T 3obw_A 329 IENKRGEVILVPKESPIYFELKNLTGILAILRFRIN 364 (364)
T ss_dssp HHTTTCEEEEECTTSTTHHHHHHTTTEEEEESSCCC
T ss_pred HHhcCCEEEEECCCCCCchhhhcCCcEEEEEeccCC
Confidence 99999999999999 99999999999999999997
No 4
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-59 Score=440.59 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=185.0
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
|||++++ .++++|+|+|+||++||||||||||++||.|+|+| |||+.+++++..+++|++++|+|+ ||+++|||+
T Consensus 1 Mki~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~---Ve~ief~~~ 75 (352)
T 3oby_A 1 MQIVEEN-LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIE---VEKVEFHRF 75 (352)
T ss_dssp CEEEEEC-CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEE---EEEEEECSS
T ss_pred Cceeeec-cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEE---EEEEEecCC
Confidence 9999999 78899999999999999999999999999999999 999988878744559999999999 999999999
Q ss_pred CCe-----eecccc-------------H----------------------------------------------------
Q 048626 81 GSI-----KNILEN-------------E---------------------------------------------------- 90 (260)
Q Consensus 81 ~~~-----~ni~e~-------------~---------------------------------------------------- 90 (260)
+++ +++.++ .
T Consensus 76 ~~~Lri~G~i~~~~~~G~~hT~~iep~~~i~i~k~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~ 155 (352)
T 3oby_A 76 ANRLRVSGKIVAGIEESGYHTLNITVGKELSIIKKWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIF 155 (352)
T ss_dssp SSCEEEEEEEEEC----CEEEEEECTTCCEEEEEECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEEEEecCCCCeEEEEEEeCCCeEEEEEcCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEE
Confidence 887 222211 1
Q ss_pred ---------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHH---H-----------------HHH
Q 048626 91 ---------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLE---A-----------------EEV 134 (260)
Q Consensus 91 ---------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~---~-----------------~Ev 134 (260)
+||++|++++.++ ++++||| ||||+|++|++||+++ . +|+
T Consensus 156 ~i~~~ipkK~g~~r~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~l~~kvv~v~~s~gg~~gl~Ev 231 (352)
T 3oby_A 156 EERMGYGKGMGDSRKEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPEMAKNAVVVDVSSVGSRGFIEI 231 (352)
T ss_dssp EEEC--------CCCCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHHHHTTEEECCCCCCHHHHHHHH
T ss_pred EEeccCCCccchhHHHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHHhhCcEEEEECCCCchhhHHHH
Confidence 7999999999999 7999999 9999999999999873 1 999
Q ss_pred hhhhHHHHHHHHHHHHhHHH--------------------HHHHHHhcCCccEEEEecCCccCcchhhH--HHHHHHHHH
Q 048626 135 LYASSVMNMIKDTKAAQEVQ--------------------HVEVAHQRMAVQTLHITDDLFRNTAIATR--KKYVDLVNS 192 (260)
Q Consensus 135 L~~~~v~~~l~~~k~~~E~~--------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R--~~~~~l~e~ 192 (260)
|++|+++++++++++++|.+ +|.+|+++|||+||||+|+|+|+. | +.+++|++.
T Consensus 232 l~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~----r~~~~~~~l~e~ 307 (352)
T 3oby_A 232 LKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKGERVAYGLDEVREAHNYRAIEVLLVADEFLLEE----REKWDVDGLLRE 307 (352)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEESHHHHHHHHTTTCEEEEEEEHHHHHHH----TTTSCHHHHHHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEECHHHHHHHHHcCCceEEEEeccchhcc----cchHHHHHHHHH
Confidence 99999999999999999998 999999999999999999999853 3 369999999
Q ss_pred HHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCC
Q 048626 193 VKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLT 229 (260)
Q Consensus 193 v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~ 229 (260)
|+++||+|+|||++ +|+||++|||||||||||+|+|+
T Consensus 308 ~~~~G~~v~i~S~~~e~G~qL~~lGGIaAiLRy~~~~~~ 346 (352)
T 3oby_A 308 VEESGGKVVIMSTEFEPGKRLMSLGGIAALLRFNVKGLE 346 (352)
T ss_dssp HHHTTCEEEEECTTSHHHHHHHHTTSEEEEESSCCCC--
T ss_pred HHHcCCEEEEEcCCCcchhHHhcCCCEEEEEecCCcccc
Confidence 99999999999999 99999999999999999999886
No 5
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-59 Score=441.99 Aligned_cols=217 Identities=28% Similarity=0.356 Sum_probs=201.8
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCC-CCccceEEEEEEEEECCccceeeccc
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKS-GGKDAEWVKLKSEIWWPSLSGKLYDK 79 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~I~~~~Ve~vefd~ 79 (260)
|||++++ +++|+|+|+||++||||||||||++||.|+|+|+|||++++++ ++++++|++++|+|+ ||+++||+
T Consensus 1 Mki~~~~---~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~---Ve~~ef~~ 74 (357)
T 3j15_A 1 MEILEEK---PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQ---AEKINFHK 74 (357)
T ss_dssp CCCEECS---TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEE---CSCEEEET
T ss_pred CceeEec---CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEE---EEEEEecC
Confidence 9999999 4889999999999999999999999999999999999988776 477899999999999 99999999
Q ss_pred CCCe-----eecccc-H---------------------------------------------------------------
Q 048626 80 EGSI-----KNILEN-E--------------------------------------------------------------- 90 (260)
Q Consensus 80 ~~~~-----~ni~e~-~--------------------------------------------------------------- 90 (260)
++++ +++.+| +
T Consensus 75 ~~~~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~ 154 (357)
T 3j15_A 75 FANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREY 154 (357)
T ss_dssp TTTEEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETT
T ss_pred CCCEEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCC
Confidence 9988 333322 1
Q ss_pred --------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------
Q 048626 91 --------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------ 131 (260)
Q Consensus 91 --------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------ 131 (260)
+||++|++++.+++++.++++||| ||||+|++|++||.+++
T Consensus 155 ~~~~~~~i~~~ipkK~~~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~l~~kvv~v~~ 234 (357)
T 3j15_A 155 GVEILNSIRHNLGGKRYNTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPELAKKVVIEDT 234 (357)
T ss_dssp EEEEEECCCCCSCSSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCCSSCEECCCCC
T ss_pred EEEEEEEEEecCCCCcccchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHHhhCeEEEEeC
Confidence 999999999999999999999999 99999999999998742
Q ss_pred --------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhh
Q 048626 132 --------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIAT 182 (260)
Q Consensus 132 --------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~ 182 (260)
+|+|++|++++.++++++++|.+ +|.+|+++|||+||||+|+++| ++ .
T Consensus 235 s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r--~~-~ 311 (357)
T 3j15_A 235 SVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLK--GE-L 311 (357)
T ss_dssp SCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHT--SS-C
T ss_pred CCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccc--cc-c
Confidence 99999999999999999999988 9999999999999999999998 33 6
Q ss_pred HHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCC
Q 048626 183 RKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLP 226 (260)
Q Consensus 183 R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~ 226 (260)
|+.+++|++.|+++||+|+|||++ +|+||++|||||||||||+|
T Consensus 312 ~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL~~lgGiaAiLRy~ip 357 (357)
T 3j15_A 312 REKVEELMDAVRYSRGEVVVVSSEHEGGEKLKALGGLAALLRFRVK 357 (357)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHHCSEEEEESSCCC
T ss_pred hHHHHHHHHHHHHcCCEEEEECCCCCcchhhhcCCcEEEEEeccCC
Confidence 888999999999999999999999 99999999999999999997
No 6
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=5.8e-57 Score=422.66 Aligned_cols=212 Identities=21% Similarity=0.328 Sum_probs=182.0
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeecc-CCCCccceEEEEEEEEECCccceeeccc
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQT-KSGGKDAEWVKLKSEIWWPSLSGKLYDK 79 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~I~~~~Ve~vefd~ 79 (260)
|||+++++ ++|+|+|+||++||||||||||++||.|+|+|+|||++++ .+|+++++|++++|+|+ ||+++||+
T Consensus 1 Mki~~~~~---~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~---Ve~v~f~~ 74 (347)
T 2qi2_A 1 MRILEEDL---KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLK---VEKIEFQD 74 (347)
T ss_dssp CEEEEEET---TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEE---ECCTTCSC
T ss_pred CceeEeec---cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEE---EEEEEccC
Confidence 99999997 4899999999999999999999999999999999999854 55677899999999999 99999999
Q ss_pred CCCe-----eec---------------ccc--------------------------------------------------
Q 048626 80 EGSI-----KNI---------------LEN-------------------------------------------------- 89 (260)
Q Consensus 80 ~~~~-----~ni---------------~e~-------------------------------------------------- 89 (260)
++++ +++ +++
T Consensus 75 ~~~~Lri~G~vv~~~~~~~g~~htl~ie~~~~i~i~k~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~ 154 (347)
T 2qi2_A 75 FDNRLRILGTVIEGPEDTKGKHQSITVTVDSEISITKEWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQ 154 (347)
T ss_dssp EEEEEEECC---------CCSEEEEEECTTCEEEEESCCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEE
T ss_pred CCCEEecceEEEEcCCCCCccEEEEEEcCCCeEEEEEcCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEE
Confidence 9887 111 111
Q ss_pred --------------------HHHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH-----------------
Q 048626 90 --------------------EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131 (260)
Q Consensus 90 --------------------~~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~----------------- 131 (260)
.+||++|++++.++ + ++||| ||||+|++|.+|+.+++
T Consensus 155 ~~~~i~~~~~Kk~~~s~f~r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~~~i~~v~~s~~~~~gl 229 (347)
T 2qi2_A 155 QVGTVYSGRSGKYAEGNYSEASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGVNVIGSFPANRTDSGAV 229 (347)
T ss_dssp EEEEEECCHHHHC----CCHHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSCCCSCCEECSSSSHHHH
T ss_pred EEEEEeecCCCccccchhhHHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhcceEEEEecCCCccccH
Confidence 18999999999999 2 89999 99999999999998753
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHH-------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHH
Q 048626 132 EEVLYASSVMNMIKDTKAAQEVQ-------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNS 192 (260)
Q Consensus 132 ~EvL~~~~v~~~l~~~k~~~E~~-------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~ 192 (260)
+|+|++++++++++++++++|.+ +|.+|+++|||+||||+|+++| |+++++|++.
T Consensus 230 ~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d~~~YG~~eV~~Ale~GAVetLlV~d~l~r------r~~~~~L~e~ 303 (347)
T 2qi2_A 230 YEFITSADGAKLLSNERIARDKEIVDEFLVAVKKDMGVYGRDQTESALQMGALSDLIITDEMFR------TEDGRRSLSI 303 (347)
T ss_dssp HHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEEHHHHT------SHHHHHHHHH
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcHHHHHHHHHcCCCeEEEEeccccc------chhHHHHHHH
Confidence 99999999999999999999999 9999999999999999999997 5569999999
Q ss_pred HHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCC
Q 048626 193 VKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLT 229 (260)
Q Consensus 193 v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~ 229 (260)
|+++||+|+|||++ +|+||++|||||||||||+++|-
T Consensus 304 ~~~~G~~V~ivs~~~e~G~qL~~lGGIAaiLRy~~~~~~ 342 (347)
T 2qi2_A 304 AQTVGTRIHIVSVSNDPGQIVKKFGGFAGILRYRVQLEH 342 (347)
T ss_dssp HHHHTCEEEEECTTSHHHHHHHHTTSEEEEECSCC----
T ss_pred HHHcCCEEEEECCCCcchHHHHhcCCEEEEEeccchhhh
Confidence 99999999999999 99999999999999999999874
No 7
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=2.9e-56 Score=419.15 Aligned_cols=216 Identities=21% Similarity=0.264 Sum_probs=201.8
Q ss_pred CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626 1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE 80 (260)
Q Consensus 1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~ 80 (260)
|||+++++ .+|+|+|+||++||||||||||++||.|+|+|+|||++ |+++++|++++|+|+ ||+++||++
T Consensus 3 Mki~~~~~---~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~---Ve~~~f~~~ 72 (358)
T 3agj_B 3 MRVEVLDN---KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIR---LDSIEFQPF 72 (358)
T ss_dssp CEEEECSS---SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEE---EEEEEECTT
T ss_pred CEEEEeec---cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEE---EEEEEcCCC
Confidence 99999997 48999999999999999999999999999999999985 666799999999999 999999999
Q ss_pred CCe-----eecccc-H----------------------------------------------------------------
Q 048626 81 GSI-----KNILEN-E---------------------------------------------------------------- 90 (260)
Q Consensus 81 ~~~-----~ni~e~-~---------------------------------------------------------------- 90 (260)
++. .++.+| +
T Consensus 73 ~~~Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~~~~~~~~~vvvd~~~A~i~~l~~~~~~ 152 (358)
T 3agj_B 73 TGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAGRARGTAVIAAVDYDEFALAVLAGHGMK 152 (358)
T ss_dssp SCEEEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHCCCCCEEEEEEECSSEEEEEEEESSCEE
T ss_pred CCEEEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhhCcCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 988 222222 1
Q ss_pred ----------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH----------------
Q 048626 91 ----------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA---------------- 131 (260)
Q Consensus 91 ----------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~---------------- 131 (260)
+||++|++++.+++++.++++||| ||||+|++|.+||..++
T Consensus 153 ~~~~i~~~vpkK~g~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~~i~~v~~s~g~~~ 232 (358)
T 3agj_B 153 ILEDTSARLPGKDDPSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSLKVATVDTSMGGVA 232 (358)
T ss_dssp EEEEEECCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTSEEEEEECSCCHHH
T ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhceEEEEEcCCCCch
Confidence 899999999999998889999999 99999999999998763
Q ss_pred --HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHHH
Q 048626 132 --EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD 188 (260)
Q Consensus 132 --~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~ 188 (260)
+|+|+++++.+.++++++++|.+ +|.+|+++|||+||||+|+++|++|++.|+.+++
T Consensus 233 gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~ 312 (358)
T 3agj_B 233 GVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDE 312 (358)
T ss_dssp HHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHH
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHH
Confidence 89999999999999999999988 9999999999999999999999988888999999
Q ss_pred HHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCC
Q 048626 189 LVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLP 226 (260)
Q Consensus 189 l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~ 226 (260)
|++.|+++||+|+|||++ +|+||++|||||||||||++
T Consensus 313 L~~~a~~~Gg~V~ivs~~~~~G~qL~~~gGIaAiLRy~i~ 352 (358)
T 3agj_B 313 ALRLVESMGGRVIIIPGDSPAGERLVSFGGVIALLRYPVP 352 (358)
T ss_dssp HHHHHHHTTCEEEEECSSSHHHHHHGGGTTEEEEESSCCC
T ss_pred HHHHHHHcCCEEEEECCCCcchhhhhcCCcEEEEEeccCc
Confidence 999999999999999998 99999999999999999997
No 8
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.94 E-value=2.2e-28 Score=198.72 Aligned_cols=98 Identities=51% Similarity=0.745 Sum_probs=93.0
Q ss_pred HhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHH
Q 048626 134 VLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNS 192 (260)
Q Consensus 134 vL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~ 192 (260)
+|++|+++++++++++++|.+ +|.+|+++|||+||||+|+++|++++..|+++.+|++.
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~ 82 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDS 82 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHH
Confidence 578999999999999999988 99999999999999999999999999899999899999
Q ss_pred HHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCC
Q 048626 193 VKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKN 231 (260)
Q Consensus 193 v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~ 231 (260)
|+++||+|+|||++ +|+||++|||||||||||++++++.
T Consensus 83 ~~~~G~~V~ivs~~~~~G~qL~~~gGIaAiLRy~i~~~~~~ 123 (124)
T 1x52_A 83 VKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPSGPSS 123 (124)
T ss_dssp HHHTTCEEEEECSSSHHHHHHHTTTTEEEEESSCCTTCSCC
T ss_pred HHHcCCEEEEECCCCccHHHHhcCCCEEEEEecCCcccccC
Confidence 99999999999998 9999999999999999999988764
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=99.94 E-value=1.5e-30 Score=249.81 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcccc---CCccEEEE-cCcccHHHHHHH--HHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVDF---NVVRCAEI-SPGFTENQCHLH--LLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~~---~~~k~III-GPGf~k~~f~~y--l~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.+++.+ .++++||| ||||+|++|.+| +.... +|+|++ +.+++++
T Consensus 200 ~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L~~~vv~~v~~s~g~~~gl~E~l~~--~~~~l~~ 277 (437)
T 1dt9_A 200 NYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIEL--STEVLSN 277 (437)
T ss_dssp TTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTTTTTCCCEEECSSCTTHHHHHHHHH--HSSTTTS
T ss_pred HHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhhHhcEEEEEecCCCccccHHHHHHH--HHHHHHH
Confidence 8999999999999864 37899999 999999999873 22111 899997 5889999
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCCc------cCcc------------h-hhH---
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLF------RNTA------------I-ATR--- 183 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~------r~~d------------~-~~R--- 183 (260)
+++++|.+ +|.+|+++|||+||||+|+++ |+++ + .+|
T Consensus 278 ~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~ 357 (437)
T 1dt9_A 278 VKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHF 357 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccc
Confidence 99988888 999999999999999999998 4441 0 011
Q ss_pred ---------------HHHHHHHHHHHhcCCEEEEEcCC--chhc-ccccccEEEEeecCCC
Q 048626 184 ---------------KKYVDLVNSVKDSGGTAHVFSSM--SQGN-LGQLTGVAAILRFPLP 226 (260)
Q Consensus 184 ---------------~~~~~l~e~v~~~Gg~V~I~Ss~--~Geq-L~~lGGIAAILRypi~ 226 (260)
+-+++|++.|+++||+|+|||++ +|+| |++|||||||||||++
T Consensus 358 ~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l~~~gGIaAiLRy~i~ 418 (437)
T 1dt9_A 358 TDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418 (437)
T ss_dssp C-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTEEEECSSCCC
T ss_pred cCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHHHHHhCCCEEEEEecccc
Confidence 12667999999999999999998 9999 9999999999999998
No 10
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5.8e-27 Score=225.55 Aligned_cols=139 Identities=18% Similarity=0.139 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccc---cCCccEEEE-cCcccHHHHHH--HHHHHH------------------HHHhhhhHHHHHHHH
Q 048626 91 YFFESVLHAFLKHVD---FNVVRCAEI-SPGFTENQCHL--HLLLEA------------------EEVLYASSVMNMIKD 146 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~~---~~~~k~III-GPGf~k~~f~~--yl~~~~------------------~EvL~~~~v~~~l~~ 146 (260)
+||++|++++.++|. +.++++||| ||||+|++|.+ |+.... +|+|++ +++++++
T Consensus 205 ~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~kvv~~vdvs~gg~~Gl~EvL~~--~~~~L~d 282 (441)
T 3e20_C 205 NYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIEL--AADTLSN 282 (441)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHhheEEEEECCCCCccCHHHHHHH--HHHHHHH
Confidence 899999999999986 568999999 99999999998 443221 899997 6899999
Q ss_pred HHHHhHHH---------------------HHHHHHhcCCccEEEEecCCc------cCcch-------------------
Q 048626 147 TKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLF------RNTAI------------------- 180 (260)
Q Consensus 147 ~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~------r~~d~------------------- 180 (260)
+++++|.+ +|.+|+++|||+||||+|++. ||++-
T Consensus 283 ~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
T 3e20_C 283 VKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNS 362 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccc
Confidence 99999998 999999999999999999996 55311
Q ss_pred -------------hhHHH-HHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCCC--CCCCC
Q 048626 181 -------------ATRKK-YVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPLP--NLTKN 231 (260)
Q Consensus 181 -------------~~R~~-~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi~--~l~~~ 231 (260)
..+++ +++|++.|+++||+|+|||+. +|+|| ++|||||||||||++ +++++
T Consensus 363 ~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~~fgGIaaiLRy~~~~~~~~~~ 432 (441)
T 3e20_C 363 FLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPE 432 (441)
T ss_dssp --------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHHHTSTTEEEECSSCCCCCSSCSS
T ss_pred cccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHHHcCCcEEEEEeccCChHHhccc
Confidence 11223 456999999999999999998 99998 899999999999997 45443
No 11
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.91 E-value=5.9e-25 Score=206.80 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhcc---c-cCCccEEEE-cCcccHHHHH--HHHHHHH-------------------HHHhhhhHHHHHH
Q 048626 91 YFFESVLHAFLKHV---D-FNVVRCAEI-SPGFTENQCH--LHLLLEA-------------------EEVLYASSVMNMI 144 (260)
Q Consensus 91 ~Ff~~V~~~l~~~~---~-~~~~k~III-GPGf~k~~f~--~yl~~~~-------------------~EvL~~~~v~~~l 144 (260)
+||++|++++.+++ + +.++++||| ||||+|++|. +||..++ +|+|++ +.+++
T Consensus 197 ~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~~v~~s~~~~~g~~E~l~~--~~~~l 274 (373)
T 3agk_A 197 EFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYRLKKILAPELVDVAYQGLQGLKEAVMK--AEKVV 274 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHHHHTTBCSSCEECCCCHHHHHHHHHHH--CTTCG
T ss_pred HHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChHhhhCceeEEEccCCCccccHHHHHHH--HHHHH
Confidence 99999999999998 3 478999999 9999999999 7765432 788885 58888
Q ss_pred HHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE
Q 048626 145 KDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF 203 (260)
Q Consensus 145 ~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~ 203 (260)
+++++++|.+ +|.+|+++|||+||||+|+ | +.+++|++.|+++||+|+||
T Consensus 275 ~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--r-------d~~~~L~e~a~~~G~~V~iv 345 (373)
T 3agk_A 275 EAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHES--R-------EDLEEWVEKAKSSGAQVIVV 345 (373)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETT--C-------TTHHHHHHHHTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCC--h-------hHHHHHHHHHHHcCCEEEEE
Confidence 8888888877 9999999999999999998 3 45889999999999999999
Q ss_pred cCC--chhcc-cccccEEEEeecCCCC
Q 048626 204 SSM--SQGNL-GQLTGVAAILRFPLPN 227 (260)
Q Consensus 204 Ss~--~GeqL-~~lGGIAAILRypi~~ 227 (260)
|++ +|+|| ++|||||||||||++.
T Consensus 346 s~~~~~g~ql~~~~gGIaAiLRy~~~~ 372 (373)
T 3agk_A 346 PESLAEAEWFLKTFGGLAGILRFRIST 372 (373)
T ss_dssp CTTSTTHHHHHHHHTTEEEEECC----
T ss_pred CCCCccHHHHHHhCCcEEEEEeccCCC
Confidence 999 99999 9999999999999974
No 12
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.85 E-value=1.1e-21 Score=166.60 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCCccCc------------
Q 048626 132 EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRNT------------ 178 (260)
Q Consensus 132 ~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l~r~~------------ 178 (260)
+|+|+. .+++|++.++++|.+ +|.+|++||||+||||+|+|+++.
T Consensus 11 ~E~i~~--~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~ 88 (166)
T 3ir9_A 11 SELVNA--AGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYEN 88 (166)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEE
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCcee
Confidence 688886 489999999999988 999999999999999999999761
Q ss_pred ------chh-------------------hH-HHHHHHHHHHHhcCCEEEEEcCC--chhcc-cccccEEEEeecCCC
Q 048626 179 ------AIA-------------------TR-KKYVDLVNSVKDSGGTAHVFSSM--SQGNL-GQLTGVAAILRFPLP 226 (260)
Q Consensus 179 ------d~~-------------------~R-~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL-~~lGGIAAILRypi~ 226 (260)
++. .| +.+++|++.|+++||+|.|||+. +|+|| ++|||||||||||+.
T Consensus 89 ~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIaaiLRy~i~ 165 (166)
T 3ir9_A 89 KWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAILRYNTG 165 (166)
T ss_dssp EEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEEEEESSCCC
T ss_pred EEEeecChhhcccccccccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEEEEEeccCC
Confidence 111 13 33669999999999999999999 99999 999999999999985
No 13
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=81.36 E-value=2.9 Score=37.12 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHhcC-CccEEEEecCCccCcchhhHHHHHHHHHHHHhcC-CEEEEEcCC-chh--cccccccEEEEeecCCCCCC
Q 048626 155 HVEVAHQRM-AVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSG-GTAHVFSSM-SQG--NLGQLTGVAAILRFPLPNLT 229 (260)
Q Consensus 155 eV~~A~e~G-AVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~G-g~V~I~Ss~-~Ge--qL~~lGGIAAILRypi~~l~ 229 (260)
.|..|++.| .+++|+++++... + .+.++++.+++.| ..|+.+|.. --+ ....-.||+|+.+.|-.+++
T Consensus 36 ~v~eal~~~~~i~~l~~~~~~~~------~-~~~~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~l~ 108 (274)
T 1ipa_A 36 EIERALQAGIELEQALVWEGGLN------P-EEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLE 108 (274)
T ss_dssp HHHHHHHTTCCEEEEEEETTCCC------H-HHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCCCCCC
T ss_pred HHHHHHhCCCCeEEEEEEcCccc------c-hHHHHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCCHH
Confidence 899999988 6999999988652 1 1456777777777 799999887 111 11345799999987655554
Q ss_pred C
Q 048626 230 K 230 (260)
Q Consensus 230 ~ 230 (260)
+
T Consensus 109 ~ 109 (274)
T 1ipa_A 109 E 109 (274)
T ss_dssp C
T ss_pred H
Confidence 4
No 14
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=68.96 E-value=6.2 Score=34.45 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcC--CccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chh--cccccccEEEEeecC
Q 048626 152 EVQHVEVAHQRM--AVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQG--NLGQLTGVAAILRFP 224 (260)
Q Consensus 152 E~~eV~~A~e~G--AVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Ge--qL~~lGGIAAILRyp 224 (260)
..+.|..|++.| .+++|+++++.... .+.++++.+++.|..++.+|.. --+ ....-.||+|+.+.+
T Consensus 17 G~~~V~eal~~~~~~i~~l~~~~~~~~~-------~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 17 GIHAVQALLERAPERFQEVFILKGREDK-------RLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp SHHHHHHHHHSCGGGEEEEEEESSCCCT-------TTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCC
T ss_pred EHHHHHHHHhcCCCCeEEEEEECCccch-------hHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEecc
Confidence 333788999988 59999999885521 1446777788889999999887 111 113568999998753
No 15
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=66.97 E-value=4.7 Score=35.84 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=46.2
Q ss_pred HHHHHHhcC-CccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chh--cccccccEEEEeecC-CCCCC
Q 048626 155 HVEVAHQRM-AVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQG--NLGQLTGVAAILRFP-LPNLT 229 (260)
Q Consensus 155 eV~~A~e~G-AVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Ge--qL~~lGGIAAILRyp-i~~l~ 229 (260)
.|..|++.| .+..|+++++.... .++++.+++.|..|+.+|.. -.+ ....-.||+|+.+.| ..+++
T Consensus 42 ~V~eaL~~~~~i~~l~~~~~~~~~---------~~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~ 112 (277)
T 3nk6_A 42 PLMECIRAGVQFIEVYGSSGTPLD---------PALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLA 112 (277)
T ss_dssp HHHHHHHTTCCEEEEEEETTSCCC---------HHHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHH
T ss_pred HHHHHHhCCCCeEEEEEeCCccCc---------HHHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHH
Confidence 788899887 68999999986521 35677788889999999876 111 113567999999876 44443
No 16
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=63.73 E-value=7.8 Score=28.00 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHHHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc
Q 048626 145 KDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL 211 (260)
Q Consensus 145 ~~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL 211 (260)
+--++....++|.+|++.|-+.-++|+.+.- + .-...+...++.+|..++.+++. -|..+
T Consensus 8 kagk~~~G~~~v~kai~~gkaklViiA~D~~----~---~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 8 QAKSIIIGTKQTVKALKRGSVKEVVVAKDAD----P---ILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp HCSEEEESHHHHHHHHTTTCEEEEEEETTSC----H---HHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred HcCCeeEcHHHHHHHHHcCCeeEEEEeCCCC----H---HHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 3334555666999999999999999999865 2 23445777788899999999977 55444
No 17
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.71 E-value=57 Score=23.92 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE-cCC--chhcccc-cc-cEEEEe
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF-SSM--SQGNLGQ-LT-GVAAIL 221 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~-Ss~--~GeqL~~-lG-GIAAIL 221 (260)
++....++|.+|++.|-+.-++++.+-- +..++ .+...++..+..++++ .+. -|.-+.. .+ .++||+
T Consensus 15 k~v~G~~~v~kai~~gka~lViiA~D~~----~~~~~---~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~ 86 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGGAKLIIVAKNAP----KEIKD---DIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIV 86 (99)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEECCCC----HHHHH---HHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEES
T ss_pred CEeECHHHHHHHHHcCCccEEEEeCCCC----HHHHH---HHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEE
Confidence 3444444999999999999999999832 23333 4555567789998877 554 6665543 22 345665
No 18
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=50.20 E-value=54 Score=24.17 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccc-cccEEEEe
Q 048626 152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQ-LTGVAAIL 221 (260)
Q Consensus 152 E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~-lGGIAAIL 221 (260)
..++|.+|++.|-+.-++++.+.- +..++ .+...++..+..++.+.+. -|.-+.. .-.++||+
T Consensus 22 G~~~v~kai~~gka~lViiA~D~~----~~~~~---~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~~vai~ 87 (101)
T 3on1_A 22 GEEQVVKAVQNGQVTLVILSSDAG----IHTKK---KLLDKCGSYQIPVKVVGNRQMLGRAIGKHERVVIGVK 87 (101)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTSC----HHHHH---HHHHHHHHHTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred CHHHHHHHHHcCCCcEEEEeCCCC----HHHHH---HHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeEEEEEE
Confidence 334999999999999999999865 22333 4555667788988888766 5555532 34466664
No 19
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=49.90 E-value=59 Score=24.41 Aligned_cols=69 Identities=9% Similarity=-0.078 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE-cCC--chhccc-ccc-cEEEEeecC
Q 048626 150 AQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF-SSM--SQGNLG-QLT-GVAAILRFP 224 (260)
Q Consensus 150 ~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~-Ss~--~GeqL~-~lG-GIAAILRyp 224 (260)
....++|.+|++.|-+.-++|+.+.. +... ..+-..++.++..++++ .+. -|.-+. ..+ .++||+-..
T Consensus 23 ~~G~~~v~kai~~gka~lViiA~D~~----~~~~---~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g 95 (110)
T 3cpq_A 23 ILGSKRTIKFVKHGEGKLVVLAGNIP----KDLE---EDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEG 95 (110)
T ss_dssp EESHHHHHHHHHTTCCSEEEECTTCB----HHHH---HHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECT
T ss_pred eeCHHHHHHHHHcCCceEEEEeCCCC----HHHH---HHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCC
Confidence 33344999999999999999999872 2233 34555677789998888 555 666664 334 368888654
Q ss_pred C
Q 048626 225 L 225 (260)
Q Consensus 225 i 225 (260)
.
T Consensus 96 ~ 96 (110)
T 3cpq_A 96 L 96 (110)
T ss_dssp T
T ss_pred H
Confidence 3
No 20
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=49.63 E-value=27 Score=30.98 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=44.3
Q ss_pred HHHHHHhcCC-ccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-chh--ccc-ccccEEEEeecCCCCCC
Q 048626 155 HVEVAHQRMA-VQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQG--NLG-QLTGVAAILRFPLPNLT 229 (260)
Q Consensus 155 eV~~A~e~GA-VetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~Ge--qL~-~lGGIAAILRypi~~l~ 229 (260)
-|..|++.|. ++.|+++++.... ..+.++++.+ +..|+.+|.. -.+ ... .-.||+|+.+.|-.+++
T Consensus 48 ~V~eal~~~~~i~~l~~~~~~~~~------~~~~~l~~~~---~~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~~l~ 118 (287)
T 1x7o_A 48 PISLAVEHGWPVRTLLYDGQRELS------KWARELLRTV---RTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLD 118 (287)
T ss_dssp HHHHHHHTTCCEEEEEEESSCCCC------HHHHHHHHHS---CSEEEEECHHHHTTSSCSSSCCCSEEEEEECCCCCGG
T ss_pred HHHHHHhCCCCeEEEEEecCcccc------hhHHHHHHHc---CCcEEEeCHHHHHHHhCCCCCCCcEEEEEecCCCCHH
Confidence 8999999887 8999999986521 2244454443 3688888876 111 113 45799999987654444
Q ss_pred C
Q 048626 230 K 230 (260)
Q Consensus 230 ~ 230 (260)
+
T Consensus 119 ~ 119 (287)
T 1x7o_A 119 R 119 (287)
T ss_dssp G
T ss_pred H
Confidence 3
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=48.79 E-value=26 Score=30.01 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=41.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 163 ~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 163 EIGRALMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp HHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 6666666654 6999999999999999999999888876668888888887
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.45 E-value=28 Score=29.19 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 150 ~laral~~~--p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 150 AIARALANE--PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp HHHHHTTTC--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 444444433 46999999999999999999998888776568888888887
No 23
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=47.75 E-value=27 Score=27.64 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=34.8
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+|+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 83 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 122 (148)
T 1f2t_B 83 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122 (148)
T ss_dssp SEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence 6899999998889999999999888877678888888887
No 24
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=46.87 E-value=76 Score=23.41 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhccc-ccccEEEEe
Q 048626 153 VQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLG-QLTGVAAIL 221 (260)
Q Consensus 153 ~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~-~lGGIAAIL 221 (260)
.++|.+|++.|-+.-++++.+.- +..++ .+...++..+..++.+.+. -|.-+. ....++||+
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~----~~~~~---~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~ 88 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDAS----SNTAK---KVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVT 88 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSC----HHHHH---HHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred hhhhHHHHhcCceeEEEEecccc----ccchh---hhcccccccCCCeeeechHHHHHhhhCccceEEEEEe
Confidence 33999999999999999999865 22344 4455677799999988776 555443 234566664
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.80 E-value=29 Score=29.42 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=41.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 149 ~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 149 AIGRALMSRP--KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp HHHHHHTTCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5666665554 7999999999999999999999888876678888888887
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.68 E-value=33 Score=29.57 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 156 ~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 156 LIARALMVNP--RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp HHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHcCC--CEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5555555443 6999999999999999999999888877678888888887
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.53 E-value=30 Score=29.80 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 163 ~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 163 SIARALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5666666554 7999999999999999999998888776668888888887
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.50 E-value=29 Score=29.60 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 153 ~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 153 EILQLLVLEP--TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp HHHHHHHHCC--SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred HHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 6667776654 7999999999999999999999888876678888888887
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=42.70 E-value=37 Score=29.26 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 148 ~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 148 AIASVIVHEP--DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555555543 7999999999999999999998888876558888888887
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=42.69 E-value=37 Score=29.44 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 169 ~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 169 AIARALAMEP--KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5555655544 7999999999999999999999888876668888888887
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=42.23 E-value=41 Score=28.84 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHhcCCc-----cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAV-----QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAV-----etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-...= ..||+.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 55566555441 12999999999999999999999888876568888888887
No 32
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=42.15 E-value=70 Score=25.06 Aligned_cols=67 Identities=16% Similarity=0.044 Sum_probs=47.4
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccE--EEEe
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV--AAIL 221 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGI--AAIL 221 (260)
+....++|.+|++.|-+.-++++.+.-. +..+..+...++.+|..++.+.+. -|..+..--++ +||+
T Consensus 42 lv~G~~~v~kal~~gkaklViiA~D~~~------~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~ 112 (135)
T 2aif_A 42 LRKGANEATKALNRGIAEIVLLAADAEP------LEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAIT 112 (135)
T ss_dssp EEESHHHHHHHHHTTCEEEEEEETTCSC------HHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEE
T ss_pred cccCHHHHHHHHHcCCCeEEEEecCCCh------HHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEE
Confidence 4444459999999999999999987551 223356777788899999888776 56555432444 6666
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=41.97 E-value=41 Score=28.86 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhc-CCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDS-GGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~-Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++....+. |..|+++|.+
T Consensus 138 ~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 138 LIARAIASEC--KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHTTC--SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5666666554 799999999999999999998888777655 8888888887
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=39.07 E-value=28 Score=29.22 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.+|+.|+-+..-|+..+..+.+++....+.|..|+++|.+
T Consensus 143 ~laraL~~~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 143 QLASTLLVN--AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp HHHHHTTSC--CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHhC--CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 445555443 47999999999999999999998888776668888888877
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=37.12 E-value=52 Score=28.41 Aligned_cols=52 Identities=4% Similarity=-0.011 Sum_probs=39.2
Q ss_pred HHHHHHhc----CCccEEEEecCCccCcchhhHHHHHHHHHHHHhcC-CEEEEEcCC
Q 048626 155 HVEVAHQR----MAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSG-GTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~----GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~G-g~V~I~Ss~ 206 (260)
.+..|+-. ..=-.|||.|+-+..-|+..+..+.+++....+.| ..|+++|.+
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 66666654 01247999999999999999999998887776555 477777777
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=36.30 E-value=34 Score=29.55 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..++.+.+++....+.|..|+++|.+
T Consensus 174 ~iAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 174 DILQMAVLEP--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp HHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 5566665544 6999999999999999999999888876668888888887
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.60 E-value=51 Score=27.80 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+|+.|+-+..-|+..+..+.+++.... +.|..|++++.+
T Consensus 155 ~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 155 AIARALANNP--PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 6666665553 7999999999999999999888887764 459999999888
No 38
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=35.57 E-value=24 Score=26.70 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccc-CCccEEEE-cCccc
Q 048626 94 ESVLHAFLKHVDF-NVVRCAEI-SPGFT 119 (260)
Q Consensus 94 ~~V~~~l~~~~~~-~~~k~III-GPGf~ 119 (260)
++|++.+..++.. .-+..+-+ ||||+
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFI 86 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFI 86 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeE
Confidence 4677777776653 33678889 99986
No 39
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=35.29 E-value=47 Score=28.99 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .|||.|+-+..-|+..+..+.+++.... +.|..|+++|.+
T Consensus 153 ~iAraL~~~P--~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 153 AIAGVLVMEP--KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp HHHHHHTTCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 6666665554 7999999999999999999998887765 568899998887
No 40
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=34.68 E-value=1.2e+02 Score=22.43 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEE-EcCC--chhcccc-cc-cEEEEeecC
Q 048626 150 AQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHV-FSSM--SQGNLGQ-LT-GVAAILRFP 224 (260)
Q Consensus 150 ~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I-~Ss~--~GeqL~~-lG-GIAAILRyp 224 (260)
....++|.+|++.|-+.-++++.+.- +..++++ ...++..+..++. +.+. -|..+.. .+ .++||+-.-
T Consensus 24 v~G~~~v~kai~~gkaklViiA~D~~----~~~~~~i---~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G 96 (104)
T 4a18_G 24 TLGYKSTIKAIRNGTAKLVFISNNCP----TVRKSEI---EYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAG 96 (104)
T ss_dssp EESHHHHHHHHHHTCCCEEEECTTSC----HHHHHHH---HHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECS
T ss_pred eECHHHHHHHHHcCCceEEEEeCCCC----HHHHHHH---HHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccc
Confidence 33334999999999999999999864 2234444 4456667888884 5555 6666643 33 457777544
Q ss_pred C
Q 048626 225 L 225 (260)
Q Consensus 225 i 225 (260)
.
T Consensus 97 ~ 97 (104)
T 4a18_G 97 D 97 (104)
T ss_dssp S
T ss_pred h
Confidence 3
No 41
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=34.47 E-value=65 Score=27.37 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..++.+.+++.... .|..|+++|.+
T Consensus 155 ~iAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~ 203 (247)
T 2ff7_A 155 AIARALVNNP--KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 203 (247)
T ss_dssp HHHHHHTTCC--SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSS
T ss_pred HHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 5555555443 6999999999999999999999888875 58888888887
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=34.46 E-value=1.3e+02 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-++....|||.|+-.-.-|+..++.+.+++...++.|..|++++.+
T Consensus 531 ~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 531 RLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 7777787776667999999887778888888999999889999999999998
No 43
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=32.92 E-value=1.2e+02 Score=22.94 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE-cCC--chhcccc-cc-cEEEEe
Q 048626 149 AAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF-SSM--SQGNLGQ-LT-GVAAIL 221 (260)
Q Consensus 149 ~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~-Ss~--~GeqL~~-lG-GIAAIL 221 (260)
+....++|.+|++.|-+.-++|+.+.- +..+ .++...++..+..++.+ .+. -|..+.. ++ .++||+
T Consensus 27 ~~~G~~~t~kai~~gkakLVilA~D~~----~~~~---~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~ 97 (112)
T 3iz5_f 27 YTLGYKTVLKTLRSSLGKLIILANNCP----PLRK---SEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSIL 97 (112)
T ss_dssp EEESHHHHHHHHHTTCCSEEEECSCCC----HHHH---HHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEE
T ss_pred eeECHHHHHHHHHcCCceEEEEeCCCC----HHHH---HHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEe
Confidence 333444999999999999999999864 2233 34556677789999988 454 6666542 33 456775
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=31.13 E-value=1.8e+02 Score=22.39 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=29.5
Q ss_pred EEEEecCCcc-CcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFR-NTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r-~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.|||.|+... ..++..+..+..+++...+.|..+++.|+.
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5788888864 456667777888888877777777666655
No 45
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=30.95 E-value=80 Score=32.37 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-+++-..|||.|+-.-.-|+..++.+.+++...++.|..|++++.+
T Consensus 389 ~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 389 RLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 6677777776557999999887778888999999998889999999999998
No 46
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=30.54 E-value=70 Score=27.38 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=38.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..+..+.+++....+ |..|++++.+
T Consensus 165 ~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~ 213 (260)
T 2ghi_A 165 AIARCLLKDP--KIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR 213 (260)
T ss_dssp HHHHHHHHCC--SEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred HHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 5555555443 69999999999999999999988888765 7788888877
No 47
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=30.51 E-value=2e+02 Score=30.04 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-++....|||.|+-.-.-|+..++.+.+++...++.|..|++++.+
T Consensus 514 ~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 514 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 7777777777668999999877778888888999999889999999999998
No 48
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.77 E-value=60 Score=29.30 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=35.5
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+|+.|+-+-.-|+..+..+.+++....+.|..|++++.+
T Consensus 305 ~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 5888999998889999999999888887789999999888
No 49
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.43 E-value=1.6e+02 Score=25.57 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=47.7
Q ss_pred HHHHHHhcCCc--cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC-ch----hc---ccccccEEEEeecC
Q 048626 155 HVEVAHQRMAV--QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM-SQ----GN---LGQLTGVAAILRFP 224 (260)
Q Consensus 155 eV~~A~e~GAV--etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~-~G----eq---L~~lGGIAAILRyp 224 (260)
.+..|+-...+ -.+||.|+....-|+..++.+.+++.... .|..|+++|.. .- .+ +.-..|.-.+.++.
T Consensus 229 ~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~ 307 (322)
T 1e69_A 229 GLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVE 307 (322)
T ss_dssp HHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECC
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEE
Confidence 55555542111 25999999999989999999888888764 47888888886 21 11 12235777777776
Q ss_pred CCC
Q 048626 225 LPN 227 (260)
Q Consensus 225 i~~ 227 (260)
+.+
T Consensus 308 ~~~ 310 (322)
T 1e69_A 308 VEK 310 (322)
T ss_dssp C--
T ss_pred cch
Confidence 654
No 50
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=28.94 E-value=58 Score=25.64 Aligned_cols=68 Identities=12% Similarity=-0.032 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccc-cc-cEEEEe
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQ-LT-GVAAIL 221 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~-lG-GIAAIL 221 (260)
++....++|.+|++.|-+.-++|+.+.-.. +.. ..+...++.+|-.++++.+. -|..+.. .+ .++||+
T Consensus 32 kl~~G~~~v~kai~~gkakLViiA~D~~p~---~~~---~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~ 103 (134)
T 2ale_A 32 QLKKGANEATKTLNRGISEFIIMAADCEPI---EIL---LHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASIT 103 (134)
T ss_dssp CEEESHHHHHHHHHHTCEEEEEEETTCSSG---GGG---THHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEE
T ss_pred CcccCchHHHHHHHhCCCeEEEEeCCCCHH---HHH---HHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEE
Confidence 344445599999999999999999886421 123 34556677899999888776 6665542 32 356665
No 51
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=28.40 E-value=1.7e+02 Score=21.25 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEE-cCC--chhccc-ccc-cEEEEee
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVF-SSM--SQGNLG-QLT-GVAAILR 222 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~-Ss~--~GeqL~-~lG-GIAAILR 222 (260)
++....++|.+|++.|-+.-++++.+-. +..++ .+-..++.+|..++++ .+. -|.-+. ..+ .++||+-
T Consensus 16 kl~~G~~~v~kai~~gka~lViiA~D~~----~~~~~---~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d 88 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGGAKLIIVARNAR----PDIKE---DIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVD 88 (101)
T ss_dssp EEEESHHHHHHHHHHTCCSEEEEETTSC----HHHHH---HHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEE
T ss_pred CEeECHHHHHHHHHcCCCcEEEEeCCCC----HHHHH---HHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEec
Confidence 3444455999999999999999998832 23333 4555567789998887 554 666664 334 3678876
Q ss_pred cCC
Q 048626 223 FPL 225 (260)
Q Consensus 223 ypi 225 (260)
...
T Consensus 89 ~g~ 91 (101)
T 1w41_A 89 PGA 91 (101)
T ss_dssp CTT
T ss_pred CCH
Confidence 543
No 52
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=28.27 E-value=70 Score=28.25 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=35.0
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
-.+|+.|+-...-|+..+..+.+++....+.|..|+++|.+
T Consensus 273 p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 273 ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp TCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 36899999998889999999888888877778888888887
No 53
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=27.60 E-value=75 Score=29.56 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=37.8
Q ss_pred cCcccHHHHHHHHHHHH-------HHHhhhhHHHHHHH-HHHHHhHHH-----HHHHHHhcC
Q 048626 115 SPGFTENQCHLHLLLEA-------EEVLYASSVMNMIK-DTKAAQEVQ-----HVEVAHQRM 163 (260)
Q Consensus 115 GPGf~k~~f~~yl~~~~-------~EvL~~~~v~~~l~-~~k~~~E~~-----eV~~A~e~G 163 (260)
|||.+|..+.+.|.+.. .+++.++.+.++++ ...-++++. +|++|+-+.
T Consensus 298 ~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~Ga~kA~~~A~~tl~~v~~~~g~~ 359 (388)
T 3prh_A 298 GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMENAMGLG 359 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999998776543 67788888999888 555566665 899988664
No 54
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.33 E-value=49 Score=28.85 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEE--EEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTA--HVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V--~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-+..-|+..++.+.+++....+.|..| +++|.+
T Consensus 171 ~lAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 171 MIARALMGQP--QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhCCC--CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 5666665553 6999999999999999999988887766558888 777777
No 55
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=27.07 E-value=74 Score=27.46 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=40.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++.... +.|..|++++.+
T Consensus 166 ~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 166 ALARALIRKP--RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 5666665543 7999999999999999999999888764 458888888887
No 56
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=25.56 E-value=96 Score=27.68 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=34.4
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+||.|+....-|+..+..+.+++.... .|+.|+++|.+
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 7999999998889999998888888776 58999999998
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=25.12 E-value=92 Score=29.78 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-.-.-|+..++.+.+++....+.|+.|+++|.+
T Consensus 168 ~iAraL~~~P--~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 168 AIAAALLRNA--TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp HHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7777877765 7999999998889999999998888877779999999988
No 58
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=25.06 E-value=51 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=39.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .+|+.|+-+..-|+..++.+.+++.... +.|..|+++|.+
T Consensus 136 ~lAral~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 136 ALARALVIQP--RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp HHHHHHTTCC--SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555555443 6999999999999999999988887764 458889988888
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=24.87 E-value=92 Score=31.90 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=37.0
Q ss_pred cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 166 QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 166 etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
-+|||.|+-...-|+..++.+.+++....+.|..|+++|.+
T Consensus 752 p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp CEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 38999999999999999999999888877789999999998
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=24.40 E-value=1.5e+02 Score=28.93 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-...=-.||+.|+-.-.-|+..+..+.+++....+.|..|++++.+
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7777776554345999999998889999999999988888789999999988
No 61
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.32 E-value=1.2e+02 Score=23.10 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhccc-c-cccEEEEe
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLG-Q-LTGVAAIL 221 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~-~-lGGIAAIL 221 (260)
++....++|.+|++.|-+.-++|+.+.-.. .-...+...++.+|-.++++++. -|.-+. . -..++||+
T Consensus 20 kl~~G~~~v~kai~~gkakLViiA~D~~~~------~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~ 91 (121)
T 2lbw_A 20 NVKRGVKEVVKALRKGEKGLVVIAGDIWPA------DVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIV 91 (121)
T ss_dssp CEEESHHHHHHHHHHSCCCEEEECTTCSCT------THHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEEC
T ss_pred CccccHHHHHHHHHcCCceEEEEeCCCCHH------HHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEE
Confidence 344445599999999999999999886521 11334566778899999888876 555443 2 23466665
No 62
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=24.30 E-value=89 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=41.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHH-hcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVK-DSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~-~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-...-|+..+..+.+++.... +.|..|++++.+
T Consensus 173 aIArAL~~~P--~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 173 AIARALASNP--KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HHHHHTTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred HHHHHHhcCC--CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 6666665544 7999999999999999999998887764 569999999888
No 63
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.25 E-value=1e+02 Score=22.93 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=52.3
Q ss_pred ccEEEE-cCcccHHHHHHHHHHHH-HHH---hhh-hH-HHHHHHHHHHHhHHHHHHHHHhcCCccEEEEecCCccCcchh
Q 048626 109 VRCAEI-SPGFTENQCHLHLLLEA-EEV---LYA-SS-VMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIA 181 (260)
Q Consensus 109 ~k~III-GPGf~k~~f~~yl~~~~-~Ev---L~~-~~-v~~~l~~~k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~ 181 (260)
.+.++| |.|.....+.+++.... .++ +.+ +. ....+.+..+.. ..++...++...|+.++|+-....
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~id~viia~~~~~----- 77 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCISTVLLAVPSAS----- 77 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTCCEEEECCTTSC-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCCCEEEEeCCCCC-----
Confidence 345677 99999888888776531 110 100 00 000011111111 124445555567889998754321
Q ss_pred hHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 182 TRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 182 ~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.....++++.+.++|.+|.++|+.
T Consensus 78 -~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 78 -QVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp -HHHHHHHHHHHHTTTCEEEECCCH
T ss_pred -HHHHHHHHHHHHHcCCeEEECCCH
Confidence 234567889999999999999986
No 64
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=24.16 E-value=90 Score=24.50 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=33.2
Q ss_pred HHHHHHhcCCccEEEEe--cCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHIT--DDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIs--D~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
....+++.|-|++|+|. |-|-|+ -.++..+++...+.|..++++...
T Consensus 66 ~ll~~~~~g~id~vvv~~ldRl~R~-----~~~~~~~~~~l~~~gv~l~~~~~~ 114 (169)
T 3g13_A 66 RMINDCMNGEIDMVFTKSISRFARN-----TLDTLKYVRMLKERNIAVYFEDEK 114 (169)
T ss_dssp HHHHHHHTTCCSEEEESCHHHHCSS-----HHHHHHHHHHHHTTTCEEEETTTT
T ss_pred HHHHHHHcCCCcEEEEEeccccccC-----hHHHHHHHHHHHHcCCEEEEecCC
Confidence 34456678999999886 334453 344667888889999998887543
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.09 E-value=60 Score=27.39 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-... .||+.|+-+..-|+..++.+.+++.... .|..|++++.+
T Consensus 149 ~lAral~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 149 AIARAFLRNP--KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR 197 (243)
T ss_dssp HHHHHHHHCC--SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred HHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 5556655544 6999999998889999999888888776 58888888887
No 66
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=23.24 E-value=93 Score=29.76 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=40.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.|||.|+-...-|+..+..+.+++... ++.|+.|+++|.+
T Consensus 411 ~lAraL~~~--p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 411 AIAATLLRD--ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp HHHHHHTSC--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHhC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 555666554 3799999999999999999988888775 4679999999998
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=23.18 E-value=1.1e+02 Score=29.82 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHhcCCc-cEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAV-QTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAV-etLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+= -.||+.|+-...-|+..+..+.+++....+.|..|++++.+
T Consensus 553 ~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 553 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 66667655432 26999999999999999999999888887779999999988
No 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=22.46 E-value=1.1e+02 Score=29.91 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .||+.|+-.-.-|+..+..+.+++....+.|..|+++|.+
T Consensus 238 aIAraL~~~P--~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 238 AIAAALLRKA--HFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp HHHHHHHSCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7777777665 7999999998889999999998888877679999999988
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.00 E-value=1.3e+02 Score=29.37 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .+||.|+-.-.-|+..+..+.+++....+.|..|++++.+
T Consensus 231 ~iAraL~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 231 AIGMSCVQEA--DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HHHHHHHSCC--SEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred HHHHHHHhCC--CEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 7777877765 6999999998889999999999998888889999998887
No 70
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=21.81 E-value=1.8e+02 Score=21.49 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEE-EcCC--chhcccc-cc-cEEEEeec
Q 048626 150 AQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHV-FSSM--SQGNLGQ-LT-GVAAILRF 223 (260)
Q Consensus 150 ~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I-~Ss~--~GeqL~~-lG-GIAAILRy 223 (260)
....++|.+|++.|-+.-++++.+.- +..++++ ...++..+..++. +.+. -|..+.. .+ .++||+=.
T Consensus 24 v~G~~~v~kai~~gkaklVilA~D~~----~~~~~~i---~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~ 95 (105)
T 3u5e_c 24 TLGYKSTVKSLRQGKSKLIIIAANTP----VLRKSEL---EYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEA 95 (105)
T ss_dssp EESHHHHHHHHHTTCCSEEEECTTSC----HHHHHHH---HHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred eECHHHHHHHHHcCCceEEEEeCCCC----HHHHHHH---HHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEecc
Confidence 33344999999999999999999873 3344444 4455667888884 4444 5655532 22 35677643
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=21.59 E-value=1.2e+02 Score=31.47 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred EEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 167 TLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 167 tLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
+|||.|+-...-|+..++.+.+++....+.|..|++++.+
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
No 72
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.22 E-value=1.2e+02 Score=23.43 Aligned_cols=58 Identities=5% Similarity=-0.133 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcc
Q 048626 148 KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNL 211 (260)
Q Consensus 148 k~~~E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL 211 (260)
++....+++.+|++.|-+.-++|+.+.-. +.. ...+-..++.+|..++++++. -|+.+
T Consensus 24 kl~~G~~~v~Kai~~gka~LViiA~D~~p---~~~---~~~i~~lc~~~~Ip~~~v~sk~~LG~a~ 83 (126)
T 2xzm_U 24 AISKGLHEVLRTIEAKQALFVCVAEDCDQ---GNY---VKLVKALCAKNEIKYVSVPKRASLGEYL 83 (126)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEESSCCS---TTH---HHHHHHHHHHTTCCEEEESCSHHHHHHH
T ss_pred CEeecHHHHHHHHHcCCceEEEEeCCCCh---HHH---HHHHHHHHHHhCCCEEEECCHHHHHHHH
Confidence 44555569999999999999999987531 112 234566678899999999887 45443
No 73
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=21.06 E-value=1.2e+02 Score=28.98 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=41.0
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ .|||.|+-...-|+..+..+.+++... ++.|..|+++|.+
T Consensus 395 ~iAraL~~~p--~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 395 YIAATLAKEA--DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6666666554 799999999999999999988877765 5678899999988
No 74
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=20.85 E-value=1.2e+02 Score=24.46 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHhcCCccEEEEecCCccCc----c-hhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 156 VEVAHQRMAVQTLHITDDLFRNT----A-IATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 156 V~~A~e~GAVetLLIsD~l~r~~----d-~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
+..++..+-.+ +||.|+....- | +..++.+.+++...++.|..|++++..
T Consensus 127 ~~~~l~~~~p~-~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 127 IYRVVKAINAK-RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp HHHHHHHTTCS-EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHhhCCC-EEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33444444444 56666654222 2 445666889999999899999998887
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=20.37 E-value=1.3e+02 Score=31.52 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHHhcCC-ccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMA-VQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GA-VetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~ 206 (260)
.+..|+-..+ =-+|||.|+-...-|+..+..+.+++....+.|..|+++|.+
T Consensus 855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 907 (972)
T 2r6f_A 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907 (972)
T ss_dssp HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4444444332 138999999999999999999998888877789999999998
No 76
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.28 E-value=1.2e+02 Score=27.36 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=38.8
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.||+.|+-+..-|+..|+.+.+++... ++.|..+++++.+
T Consensus 137 alAraL~~~--P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 137 ALARALVTN--PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp HHHHHTTSC--CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcC--CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 455555444 3799999999999999999988877766 4568889888887
No 77
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=20.24 E-value=1.2e+02 Score=29.63 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=40.5
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHH-HhcCCEEEEEcCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSV-KDSGGTAHVFSSM 206 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v-~~~Gg~V~I~Ss~ 206 (260)
.+..|+-.. -.||+.|+-...-|+..+..+.+++... .+.|..|+++|.+
T Consensus 477 ~iAraL~~~--p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd 527 (608)
T 3j16_B 477 AIVLALGIP--ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527 (608)
T ss_dssp HHHHHTTSC--CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHhC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455555444 4799999999999999999988888765 5679999999998
No 78
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=20.24 E-value=2.6e+02 Score=23.98 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=41.1
Q ss_pred HHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcC-C-chh--cccccccEEEEeecCCCCCCC
Q 048626 155 HVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSS-M-SQG--NLGQLTGVAAILRFPLPNLTK 230 (260)
Q Consensus 155 eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss-~-~Ge--qL~~lGGIAAILRypi~~l~~ 230 (260)
.|..|++...++.|+++++... ++.+ +.|..++.+|. . --+ ....-.||+|+.+.|-.++++
T Consensus 35 ~v~eal~~~~i~~l~~~~~~~~-----------~l~~---~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~l~~ 100 (257)
T 2i6d_A 35 LVGEMLPFYRCRMLVGTAAMLR-----------AVST---PHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPV 100 (257)
T ss_dssp HHHHHGGGSCEEEEEEEHHHHH-----------TSCC---CTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCCCCCCC
T ss_pred HHHHHHhcCCcCEEEEEcCchH-----------HHHH---hcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCCCChHH
Confidence 8889988744899999876321 1222 45779999999 6 111 113568999999876555544
Done!