BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048627
         (689 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 460 FHWHGYPLKSLPSNLSA-EKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTP 518
             W G  ++SLP++++  + L  L++ ++ +  LG  + H  KL  +    C  L    P
Sbjct: 190 LEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 519 NPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 570
                  L +L+   L+   +L +LP +I  L  L KLDL GC  L RLP +
Sbjct: 248 IFGGRAPLKRLI---LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 22/126 (17%)

Query: 520 PTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLL 579
           P  +  L  L  L +R S  L +L   I +L  L +LDL GC+ L+  P I  G      
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--- 254

Query: 580 LRGSAIEELPSSIERQLRLSWLDLTDCKMFXXXXXXXXXXXXXGVLDLHGCSNLRRLPEC 639
                             L  L L DC                  LDL GC NL RLP  
Sbjct: 255 ------------------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 640 LGQLSS 645
           + QL +
Sbjct: 297 IAQLPA 302



 Score = 37.0 bits (84), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 540 LKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-----SSG------NISWLLLRGSAIEEL 588
           L++LP+ I +L  L +L +  C +L  LPE      +SG      N+  L L  + I  L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 589 PSSIERQLRLSWLDLTDCKMFXXXXXXXXXXXXXGVLDLHGCSNLRRLPECLG 641
           P+SI     L  L + +  +                LDL GC+ LR  P   G
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE-ELDLRGCTALRNYPPIFG 250


>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
           Novel E3 Ligase
          Length = 622

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 31/211 (14%)

Query: 452 PAFAEVKYFHWHGYPLKSLPSNLS-----AEKLVFLEVPDNNIEQLGDCVKHYSKLNRII 506
           P   E+  F      L +LPS L        +L  L V    +++L       + L  + 
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP 160

Query: 507 HAACNKLIAKTPNPTLMPRL-NKLVFLNLRGSK--SLKSLPSEIFNLEFLTKLDLSGCSK 563
              C KL A     T +P L + L  L++  ++  SL +LPSE++ L        +  ++
Sbjct: 161 SELC-KLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL-------WAYNNR 212

Query: 564 LKRLPEISSGNISWLLLRGSAIEELP--SSIERQLRLSWLDLTDCKMFXXXXXXXXXXXX 621
           L  LP + SG +  L++ G+ +  LP   S  ++L +S   LT   M             
Sbjct: 213 LTSLPALPSG-LKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPS---------- 261

Query: 622 XGVLDLHGCSN-LRRLPECLGQLSSPILLNL 651
            G+L L    N L RLPE L  LSS   +NL
Sbjct: 262 -GLLSLSVYRNQLTRLPESLIHLSSETTVNL 291


>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
 pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
          Length = 378

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 317 RGEGVNLVMKFFDASGFYPEIGINVLVDKSLIAIDSYNK 355
           RGEG+      F  SG +  +G+ V   K ++AID Y K
Sbjct: 207 RGEGI-----LFIGSGIFHPLGLAVATRKKVLAIDPYTK 240


>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 6   SKENTEKLQSWRNALKEAASLSGFHSLNMRRESELINEVVNHI 48
           S+E+ EK+  WR AL   A LSG    +   +S+L++++ N I
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEI 166


>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
 pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
          Length = 114

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 421 TFTKMCKLRFLKFYSSSFNGENKCKVSYLQ-DPAFAEVKYFHWHGYPLKS 469
           TF    K + L+    S NG  +C V +L     F  +++FH H  PL+S
Sbjct: 53  TFNFQGKAKHLRL---SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLES 99


>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
           From Plasmodium Vivax.
 pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
           Fragment Of Malaria Transmission Blocking Antibody 2a8
 pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
           Fragment Of Malaria Transmission Blocking Antibody 2a8
          Length = 186

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 25/114 (21%)

Query: 422 FTKMCKLRFLKFYSSSFNGENKCKVSYL-----------QDPAFAEVKYFHW---HGYPL 467
           F  MC    +    ++   +N+CK   L           ++P  A+V  +      GY L
Sbjct: 25  FKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTL 84

Query: 468 KSLPSNLSAEKLVFLEVPD-NNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNP 520
           K        E    L+V    N  + G+C+  Y  L+ I  A C+  I K PNP
Sbjct: 85  K--------EDTCVLDVCQYKNCGESGECIVEY--LSEIQSAGCSCAIGKVPNP 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,271,589
Number of Sequences: 62578
Number of extensions: 756301
Number of successful extensions: 1816
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 19
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)