Query 048627
Match_columns 689
No_of_seqs 383 out of 4448
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.4E-83 5.2E-88 750.2 63.7 666 9-686 132-888 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-58 6.3E-63 509.7 29.4 430 66-510 161-652 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.1E-38 1.3E-42 316.1 15.8 264 68-336 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.2E-23 4.8E-28 245.7 20.3 275 400-684 69-349 (968)
5 PLN00113 leucine-rich repeat r 99.9 2E-22 4.3E-27 237.6 16.5 261 419-685 157-446 (968)
6 KOG0444 Cytoskeletal regulator 99.9 5.4E-24 1.2E-28 214.3 -1.6 276 401-685 79-380 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 9.5E-22 2.1E-26 198.3 -1.2 248 425-681 6-259 (1255)
8 KOG4194 Membrane glycoprotein 99.8 1.5E-19 3.3E-24 181.3 2.2 257 418-682 165-431 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 6.9E-20 1.5E-24 176.0 -3.4 91 589-680 428-541 (565)
10 KOG4194 Membrane glycoprotein 99.7 1.4E-18 3.1E-23 174.5 2.4 274 400-685 125-409 (873)
11 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.8E-21 187.3 19.4 111 573-684 778-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.7 6.2E-20 1.3E-24 176.3 -9.9 244 420-679 62-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 5E-16 1.1E-20 170.0 15.0 222 426-685 242-463 (788)
14 PRK15370 E3 ubiquitin-protein 99.6 6.7E-16 1.5E-20 170.2 12.5 226 426-680 199-428 (754)
15 PRK15370 E3 ubiquitin-protein 99.6 5.2E-16 1.1E-20 171.1 10.4 226 427-684 179-404 (754)
16 PRK04841 transcriptional regul 99.6 7.1E-14 1.5E-18 164.3 24.9 294 57-372 8-334 (903)
17 KOG0617 Ras suppressor protein 99.6 8.3E-17 1.8E-21 136.9 -4.0 170 469-665 25-194 (264)
18 PRK15387 E3 ubiquitin-protein 99.5 8.4E-14 1.8E-18 152.7 16.6 218 426-685 222-439 (788)
19 KOG0618 Serine/threonine phosp 99.5 3.4E-16 7.4E-21 166.1 -4.6 83 420-508 62-145 (1081)
20 KOG0617 Ras suppressor protein 99.4 1.8E-15 3.9E-20 128.9 -5.0 159 526-687 32-193 (264)
21 COG2909 MalT ATP-dependent tra 99.4 9E-12 2E-16 132.6 19.5 292 57-373 13-341 (894)
22 PRK00411 cdc6 cell division co 99.4 2.6E-11 5.6E-16 128.0 22.6 281 58-351 25-358 (394)
23 KOG0618 Serine/threonine phosp 99.4 8.6E-15 1.9E-19 155.6 -5.1 238 426-679 219-488 (1081)
24 COG3899 Predicted ATPase [Gene 99.4 7.5E-12 1.6E-16 141.2 16.2 304 64-372 1-388 (849)
25 TIGR00635 ruvB Holliday juncti 99.4 1.6E-11 3.5E-16 124.5 15.8 252 63-355 4-293 (305)
26 KOG0532 Leucine-rich repeat (L 99.3 5.8E-14 1.3E-18 141.6 -2.3 186 463-679 58-246 (722)
27 PRK00080 ruvB Holliday junctio 99.3 1.4E-11 2.9E-16 125.7 13.9 263 59-355 21-314 (328)
28 PF01637 Arch_ATPase: Archaeal 99.3 9.9E-12 2.2E-16 121.3 11.1 192 65-262 1-233 (234)
29 cd00116 LRR_RI Leucine-rich re 99.3 2.8E-13 6E-18 139.1 -2.3 255 420-679 17-319 (319)
30 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-13 3.7E-18 140.6 -6.0 223 456-681 24-292 (319)
31 TIGR02928 orc1/cdc6 family rep 99.2 1.5E-09 3.2E-14 113.4 23.5 282 58-351 10-350 (365)
32 PF05729 NACHT: NACHT domain 99.2 1.7E-10 3.7E-15 105.8 12.1 142 87-232 1-163 (166)
33 KOG4237 Extracellular matrix p 99.2 3E-12 6.5E-17 123.8 -0.1 222 455-679 67-358 (498)
34 TIGR03015 pepcterm_ATPase puta 99.2 2.5E-09 5.5E-14 106.5 20.4 176 85-267 42-242 (269)
35 PRK06893 DNA replication initi 99.0 6E-09 1.3E-13 100.1 14.7 151 86-264 39-204 (229)
36 KOG1259 Nischarin, modulator o 99.0 9.5E-11 2.1E-15 109.4 0.9 134 523-659 280-414 (490)
37 COG3903 Predicted ATPase [Gene 99.0 6.4E-10 1.4E-14 109.9 6.6 280 85-372 13-316 (414)
38 KOG4237 Extracellular matrix p 98.9 4.8E-11 1E-15 115.6 -3.1 244 403-656 70-358 (498)
39 COG4886 Leucine-rich repeat (L 98.9 1.4E-09 3.1E-14 114.8 5.6 195 460-684 98-294 (394)
40 PTZ00112 origin recognition co 98.9 8.3E-08 1.8E-12 103.8 18.3 243 58-313 750-1030(1164)
41 COG2256 MGS1 ATPase related to 98.9 3.5E-08 7.7E-13 97.0 13.3 218 61-305 22-267 (436)
42 PLN03150 hypothetical protein; 98.9 6.3E-09 1.4E-13 115.0 9.0 112 575-686 420-534 (623)
43 KOG4658 Apoptotic ATPase [Sign 98.8 1.3E-09 2.8E-14 122.9 3.4 101 456-560 546-651 (889)
44 PF05496 RuvB_N: Holliday junc 98.8 5.2E-08 1.1E-12 89.5 12.7 178 59-265 20-223 (233)
45 PRK13342 recombination factor 98.8 5.9E-08 1.3E-12 102.1 14.2 178 59-263 8-196 (413)
46 TIGR03420 DnaA_homol_Hda DnaA 98.8 7.7E-08 1.7E-12 93.1 13.7 174 62-265 14-203 (226)
47 PRK07003 DNA polymerase III su 98.8 3.1E-07 6.7E-12 99.0 19.0 183 59-262 12-220 (830)
48 PRK14961 DNA polymerase III su 98.8 3.6E-07 7.8E-12 94.3 19.1 181 59-260 12-217 (363)
49 PF13173 AAA_14: AAA domain 98.8 4E-08 8.6E-13 85.2 10.2 119 87-224 3-127 (128)
50 PRK00440 rfc replication facto 98.8 2.8E-07 6E-12 94.5 18.1 183 60-260 14-200 (319)
51 KOG0532 Leucine-rich repeat (L 98.8 6.1E-10 1.3E-14 113.1 -2.6 174 459-663 79-253 (722)
52 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 107.9 6.6 178 455-639 116-296 (394)
53 PRK14963 DNA polymerase III su 98.7 6.1E-07 1.3E-11 95.6 19.5 191 59-260 10-214 (504)
54 PF14580 LRR_9: Leucine-rich r 98.7 9E-09 1.9E-13 92.7 4.4 127 523-675 15-148 (175)
55 KOG3207 Beta-tubulin folding c 98.7 9.9E-10 2.1E-14 108.2 -2.2 199 455-657 121-339 (505)
56 PRK12402 replication factor C 98.7 2.3E-07 5.1E-12 95.8 15.2 196 59-261 11-224 (337)
57 PLN03025 replication factor C 98.7 4.8E-07 1E-11 91.9 16.9 183 59-259 9-196 (319)
58 KOG1909 Ran GTPase-activating 98.7 1.2E-09 2.6E-14 104.7 -1.9 183 475-680 90-311 (382)
59 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.9E-14 105.2 0.4 205 475-681 119-340 (505)
60 PRK14960 DNA polymerase III su 98.7 7E-07 1.5E-11 95.3 18.2 181 59-260 11-216 (702)
61 PRK04195 replication factor C 98.7 5.8E-07 1.3E-11 96.6 18.0 180 59-261 10-200 (482)
62 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.5E-14 100.0 -0.1 133 545-682 278-414 (490)
63 PRK08727 hypothetical protein; 98.7 4.9E-07 1.1E-11 87.1 15.2 169 62-260 18-201 (233)
64 PTZ00202 tuzin; Provisional 98.7 5.1E-06 1.1E-10 83.7 22.3 199 22-232 215-434 (550)
65 COG1474 CDC6 Cdc6-related prot 98.7 3E-06 6.5E-11 86.5 21.2 281 58-351 12-334 (366)
66 PRK14949 DNA polymerase III su 98.7 4.1E-07 8.9E-12 100.1 15.5 187 59-261 12-218 (944)
67 PF14516 AAA_35: AAA-like doma 98.6 1.3E-05 2.8E-10 81.6 24.9 204 57-270 5-246 (331)
68 PRK07471 DNA polymerase III su 98.6 3.8E-06 8.3E-11 85.9 20.8 199 58-264 14-239 (365)
69 PRK06645 DNA polymerase III su 98.6 2.8E-06 6.1E-11 90.2 20.0 186 59-260 17-226 (507)
70 PF14580 LRR_9: Leucine-rich r 98.6 2.9E-08 6.2E-13 89.5 4.3 104 574-681 20-127 (175)
71 PRK12323 DNA polymerase III su 98.6 6.1E-07 1.3E-11 95.5 14.7 181 59-260 12-222 (700)
72 PRK08084 DNA replication initi 98.6 1E-06 2.2E-11 85.1 15.2 170 64-263 24-209 (235)
73 PRK05642 DNA replication initi 98.6 9.7E-07 2.1E-11 85.0 14.5 150 87-264 46-209 (234)
74 PRK14962 DNA polymerase III su 98.6 3.1E-06 6.6E-11 89.6 19.5 186 59-265 10-221 (472)
75 PRK08903 DnaA regulatory inact 98.6 6.5E-07 1.4E-11 86.4 13.3 174 61-267 16-203 (227)
76 cd00009 AAA The AAA+ (ATPases 98.6 5.6E-07 1.2E-11 80.5 12.1 123 66-203 1-131 (151)
77 TIGR01242 26Sp45 26S proteasom 98.6 4.8E-07 1E-11 93.8 13.1 173 62-257 121-328 (364)
78 PF13191 AAA_16: AAA ATPase do 98.6 4E-08 8.6E-13 91.8 4.6 50 64-113 1-51 (185)
79 PRK14956 DNA polymerase III su 98.6 1.4E-06 3E-11 90.5 16.2 189 59-259 14-218 (484)
80 PRK14964 DNA polymerase III su 98.6 2.9E-06 6.3E-11 89.2 18.7 180 59-259 9-213 (491)
81 PLN03150 hypothetical protein; 98.6 7.4E-08 1.6E-12 106.6 7.0 89 597-685 419-508 (623)
82 PF00308 Bac_DnaA: Bacterial d 98.6 9.1E-07 2E-11 84.1 13.3 178 65-261 11-206 (219)
83 PRK07940 DNA polymerase III su 98.6 1.1E-06 2.4E-11 90.6 14.8 177 63-263 5-213 (394)
84 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.5E-11 87.9 15.7 176 63-261 4-188 (313)
85 PRK09112 DNA polymerase III su 98.6 1.1E-06 2.4E-11 89.2 14.4 194 58-264 18-241 (351)
86 TIGR02397 dnaX_nterm DNA polym 98.6 3E-06 6.5E-11 88.2 18.0 184 59-263 10-218 (355)
87 PRK14957 DNA polymerase III su 98.6 2E-06 4.3E-11 91.8 16.7 184 59-263 12-221 (546)
88 PRK08691 DNA polymerase III su 98.5 2E-06 4.2E-11 92.9 16.4 181 59-260 12-217 (709)
89 PRK14958 DNA polymerase III su 98.5 3E-06 6.4E-11 90.7 17.4 181 59-260 12-217 (509)
90 PRK14087 dnaA chromosomal repl 98.5 1.5E-06 3.3E-11 91.7 15.0 164 87-265 142-321 (450)
91 PRK09087 hypothetical protein; 98.5 2.1E-06 4.5E-11 82.0 14.4 138 86-262 44-194 (226)
92 PRK14951 DNA polymerase III su 98.5 7.3E-06 1.6E-10 88.8 19.6 189 59-260 12-222 (618)
93 PRK13341 recombination factor 98.5 1.7E-06 3.8E-11 95.8 14.8 173 59-259 24-213 (725)
94 PRK07994 DNA polymerase III su 98.5 2E-06 4.2E-11 93.4 14.8 181 59-260 12-217 (647)
95 PRK14955 DNA polymerase III su 98.5 3.6E-06 7.9E-11 88.0 16.0 195 59-260 12-225 (397)
96 TIGR00678 holB DNA polymerase 98.5 7.1E-06 1.5E-10 76.5 16.2 160 74-259 3-187 (188)
97 PRK05896 DNA polymerase III su 98.5 3.5E-06 7.6E-11 90.0 15.6 184 59-263 12-221 (605)
98 PF13401 AAA_22: AAA domain; P 98.5 4.6E-07 1E-11 79.1 7.5 110 85-201 3-125 (131)
99 COG2255 RuvB Holliday junction 98.4 4.3E-06 9.4E-11 78.6 13.3 265 59-357 22-317 (332)
100 PRK14969 DNA polymerase III su 98.4 3.3E-06 7.2E-11 90.9 14.5 179 59-258 12-215 (527)
101 PRK14970 DNA polymerase III su 98.4 9.4E-06 2E-10 84.6 17.3 181 59-259 13-205 (367)
102 PRK03992 proteasome-activating 98.4 7E-06 1.5E-10 85.4 16.2 173 62-257 130-337 (389)
103 PRK15386 type III secretion pr 98.4 1E-06 2.3E-11 89.2 9.3 136 496-655 48-188 (426)
104 KOG1909 Ran GTPase-activating 98.4 1.5E-08 3.4E-13 97.2 -3.6 207 475-681 28-284 (382)
105 PRK14952 DNA polymerase III su 98.4 1.3E-05 2.9E-10 86.5 18.1 184 59-263 9-220 (584)
106 TIGR02881 spore_V_K stage V sp 98.4 6.4E-06 1.4E-10 81.1 14.6 152 64-233 7-192 (261)
107 PRK09111 DNA polymerase III su 98.4 2E-05 4.4E-10 85.7 19.2 193 59-261 20-231 (598)
108 PRK14953 DNA polymerase III su 98.4 3.5E-05 7.5E-10 82.1 20.2 191 59-261 12-218 (486)
109 PRK14959 DNA polymerase III su 98.4 1.3E-05 2.8E-10 86.3 16.8 188 59-267 12-225 (624)
110 PRK14954 DNA polymerase III su 98.3 2.1E-05 4.5E-10 85.7 18.2 193 59-258 12-223 (620)
111 PRK14950 DNA polymerase III su 98.3 1.3E-05 2.9E-10 87.9 17.0 192 59-262 12-220 (585)
112 PRK07764 DNA polymerase III su 98.3 3E-05 6.4E-10 87.3 19.9 180 59-259 11-217 (824)
113 PRK14088 dnaA chromosomal repl 98.3 1.2E-05 2.7E-10 84.8 16.0 158 86-261 130-303 (440)
114 TIGR00362 DnaA chromosomal rep 98.3 1.6E-05 3.4E-10 83.9 16.2 178 65-261 113-308 (405)
115 KOG2028 ATPase related to the 98.3 3.2E-06 6.9E-11 81.9 9.2 175 61-258 136-331 (554)
116 PRK00149 dnaA chromosomal repl 98.3 1.4E-05 3.1E-10 85.3 15.3 178 65-261 125-320 (450)
117 PHA02544 44 clamp loader, smal 98.3 9.3E-06 2E-10 82.9 13.3 150 59-230 17-171 (316)
118 PRK07133 DNA polymerase III su 98.3 1.3E-05 2.8E-10 87.6 14.8 188 59-259 14-215 (725)
119 TIGR02903 spore_lon_C ATP-depe 98.3 2.6E-05 5.6E-10 85.9 17.3 50 59-110 150-199 (615)
120 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.9E-13 95.3 -7.0 176 477-655 185-374 (419)
121 TIGR02639 ClpA ATP-dependent C 98.3 2.1E-05 4.4E-10 89.1 16.9 151 61-232 180-358 (731)
122 TIGR03345 VI_ClpV1 type VI sec 98.3 1.8E-05 3.8E-10 90.3 16.4 178 61-257 185-390 (852)
123 PRK06620 hypothetical protein; 98.3 8.5E-06 1.8E-10 77.1 11.4 157 63-260 17-186 (214)
124 PRK08451 DNA polymerase III su 98.3 3.4E-05 7.3E-10 82.1 16.9 185 59-261 10-216 (535)
125 PRK06305 DNA polymerase III su 98.3 2.6E-05 5.6E-10 82.5 16.0 184 59-258 13-217 (451)
126 PRK06647 DNA polymerase III su 98.2 0.00011 2.5E-09 79.5 20.7 190 59-260 12-217 (563)
127 PF13855 LRR_8: Leucine rich r 98.2 9.5E-07 2.1E-11 65.0 3.4 38 640-677 21-59 (61)
128 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.3E-11 64.8 3.4 61 596-656 1-61 (61)
129 PRK10865 protein disaggregatio 98.2 5.7E-05 1.2E-09 86.5 17.8 153 61-232 176-354 (857)
130 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.4E-12 99.4 -2.6 212 456-679 73-289 (414)
131 PRK12422 chromosomal replicati 98.2 5.2E-05 1.1E-09 79.9 16.0 152 87-257 142-307 (445)
132 PTZ00454 26S protease regulato 98.2 3.4E-05 7.4E-10 79.9 14.3 176 61-259 143-353 (398)
133 TIGR03346 chaperone_ClpB ATP-d 98.2 8.2E-05 1.8E-09 85.6 18.9 151 61-231 171-348 (852)
134 PRK14086 dnaA chromosomal repl 98.2 5.7E-05 1.2E-09 81.0 16.2 155 87-260 315-485 (617)
135 PRK05563 DNA polymerase III su 98.1 0.0001 2.2E-09 80.3 17.9 190 59-259 12-216 (559)
136 PRK14948 DNA polymerase III su 98.1 8.4E-05 1.8E-09 81.5 17.4 190 60-261 13-220 (620)
137 PTZ00361 26 proteosome regulat 98.1 2.4E-05 5.1E-10 81.6 12.4 172 63-258 183-390 (438)
138 PRK07399 DNA polymerase III su 98.1 0.00013 2.8E-09 73.3 17.3 188 63-262 4-220 (314)
139 TIGR02880 cbbX_cfxQ probable R 98.1 3.5E-05 7.5E-10 76.5 12.9 128 88-232 60-208 (284)
140 PRK14971 DNA polymerase III su 98.1 0.00018 4E-09 78.9 19.3 178 60-259 14-218 (614)
141 PRK15386 type III secretion pr 98.1 7.5E-06 1.6E-10 83.1 7.7 134 525-678 50-188 (426)
142 KOG0989 Replication factor C, 98.1 2.1E-05 4.4E-10 75.0 9.9 181 59-258 32-225 (346)
143 KOG0531 Protein phosphatase 1, 98.1 1E-06 2.2E-11 93.3 0.9 166 456-630 96-265 (414)
144 PRK05707 DNA polymerase III su 98.1 0.00013 2.9E-09 73.6 15.9 158 85-263 21-203 (328)
145 PRK09376 rho transcription ter 98.1 7.1E-06 1.5E-10 82.3 6.6 88 87-177 170-269 (416)
146 CHL00095 clpC Clp protease ATP 98.1 4.5E-05 9.8E-10 87.4 13.9 148 63-230 179-352 (821)
147 PRK14965 DNA polymerase III su 98.1 7.9E-05 1.7E-09 81.5 15.2 184 59-263 12-221 (576)
148 KOG2227 Pre-initiation complex 98.0 0.00013 2.9E-09 73.6 15.1 168 61-233 148-339 (529)
149 TIGR03689 pup_AAA proteasome A 98.0 4.9E-05 1.1E-09 80.5 12.7 158 61-232 180-378 (512)
150 KOG1859 Leucine-rich repeat pr 98.0 9.5E-08 2.1E-12 100.1 -7.5 128 526-656 163-291 (1096)
151 CHL00181 cbbX CbbX; Provisiona 98.0 0.00023 4.9E-09 70.7 15.8 131 86-233 59-210 (287)
152 PF00004 AAA: ATPase family as 98.0 4.4E-05 9.6E-10 66.6 9.7 23 89-111 1-23 (132)
153 cd01128 rho_factor Transcripti 98.0 1.6E-05 3.5E-10 76.6 7.3 89 86-177 16-116 (249)
154 PRK08116 hypothetical protein; 98.0 4.6E-05 1E-09 74.8 10.6 102 87-202 115-221 (268)
155 CHL00176 ftsH cell division pr 98.0 0.00015 3.2E-09 79.7 15.1 174 62-257 182-388 (638)
156 COG3267 ExeA Type II secretory 97.9 0.00047 1E-08 64.5 15.5 195 65-265 30-247 (269)
157 KOG2543 Origin recognition com 97.9 0.00049 1.1E-08 67.8 16.3 160 62-232 5-193 (438)
158 PF05673 DUF815: Protein of un 97.9 7E-05 1.5E-09 70.2 10.1 55 60-114 24-80 (249)
159 COG1373 Predicted ATPase (AAA+ 97.9 0.00021 4.5E-09 74.5 14.5 162 70-262 24-191 (398)
160 KOG2120 SCF ubiquitin ligase, 97.9 1.9E-07 4.1E-12 87.8 -8.1 176 500-679 185-375 (419)
161 COG0593 DnaA ATPase involved i 97.9 0.00039 8.4E-09 71.0 14.9 133 85-233 112-258 (408)
162 TIGR00767 rho transcription te 97.9 4.4E-05 9.6E-10 77.2 8.0 88 87-177 169-268 (415)
163 PRK11034 clpA ATP-dependent Cl 97.8 4.7E-05 1E-09 85.1 9.0 152 63-231 186-361 (758)
164 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00028 6E-09 75.0 14.2 177 62-259 227-431 (489)
165 TIGR01241 FtsH_fam ATP-depende 97.8 0.00016 3.6E-09 78.2 12.8 175 61-257 53-260 (495)
166 PRK08181 transposase; Validate 97.8 6.5E-05 1.4E-09 73.2 8.5 35 87-121 107-141 (269)
167 PRK06871 DNA polymerase III su 97.8 0.00064 1.4E-08 68.1 15.5 175 72-259 11-199 (325)
168 KOG1859 Leucine-rich repeat pr 97.8 2.1E-06 4.5E-11 90.4 -2.5 20 520-539 102-121 (1096)
169 PF05621 TniB: Bacterial TniB 97.8 0.00048 1E-08 66.9 13.7 195 62-261 33-259 (302)
170 PRK12377 putative replication 97.8 6.7E-05 1.5E-09 72.2 7.6 36 86-121 101-136 (248)
171 TIGR00602 rad24 checkpoint pro 97.8 0.00016 3.5E-09 78.7 11.3 53 59-111 80-135 (637)
172 PF01695 IstB_IS21: IstB-like 97.8 3.9E-05 8.5E-10 70.2 5.6 36 86-121 47-82 (178)
173 COG1222 RPT1 ATP-dependent 26S 97.8 0.00057 1.2E-08 66.9 13.6 169 64-259 152-359 (406)
174 PRK08769 DNA polymerase III su 97.8 0.0013 2.8E-08 65.8 16.6 184 71-264 12-209 (319)
175 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.4E-10 52.5 3.0 36 645-680 2-37 (44)
176 PRK08058 DNA polymerase III su 97.7 0.00054 1.2E-08 69.7 13.9 145 64-231 6-181 (329)
177 PRK06090 DNA polymerase III su 97.7 0.0017 3.7E-08 65.0 16.8 178 71-263 11-201 (319)
178 TIGR01243 CDC48 AAA family ATP 97.7 0.00052 1.1E-08 78.2 14.7 174 63-259 178-383 (733)
179 PRK07952 DNA replication prote 97.7 0.00025 5.3E-09 68.1 10.2 50 72-121 85-134 (244)
180 KOG0991 Replication factor C, 97.7 0.00019 4.2E-09 65.5 8.7 50 60-111 24-73 (333)
181 PRK07993 DNA polymerase III su 97.7 0.00091 2E-08 67.8 14.5 178 71-260 10-201 (334)
182 PF10443 RNA12: RNA12 protein; 97.7 0.01 2.2E-07 60.5 21.6 102 164-269 148-284 (431)
183 PRK06526 transposase; Provisio 97.7 5.5E-05 1.2E-09 73.4 5.4 34 86-119 98-131 (254)
184 PRK11331 5-methylcytosine-spec 97.6 0.00011 2.4E-09 75.7 7.0 55 63-121 175-231 (459)
185 PLN00020 ribulose bisphosphate 97.6 0.0014 3.1E-08 65.3 14.3 154 84-258 146-333 (413)
186 PRK10536 hypothetical protein; 97.6 0.00026 5.6E-09 67.4 8.8 134 63-203 55-214 (262)
187 COG0466 Lon ATP-dependent Lon 97.6 0.00024 5.1E-09 75.8 9.2 160 62-232 322-508 (782)
188 KOG2982 Uncharacterized conser 97.6 1.5E-05 3.2E-10 75.3 0.3 157 526-683 70-265 (418)
189 PRK09183 transposase/IS protei 97.6 0.00011 2.3E-09 71.9 6.3 36 86-121 102-137 (259)
190 PRK06921 hypothetical protein; 97.6 0.0001 2.3E-09 72.1 6.2 36 86-121 117-153 (266)
191 KOG4341 F-box protein containi 97.6 8.5E-07 1.8E-11 87.5 -8.3 86 594-679 344-438 (483)
192 smart00382 AAA ATPases associa 97.6 0.00012 2.5E-09 64.8 5.9 35 87-121 3-37 (148)
193 TIGR01243 CDC48 AAA family ATP 97.6 0.0012 2.7E-08 75.1 15.2 173 63-258 453-658 (733)
194 COG2812 DnaX DNA polymerase II 97.5 0.00066 1.4E-08 71.5 11.3 189 59-258 12-215 (515)
195 PRK06835 DNA replication prote 97.5 0.00018 3.9E-09 72.5 6.8 35 87-121 184-218 (329)
196 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 49.3 3.7 39 621-660 2-40 (44)
197 KOG3665 ZYG-1-like serine/thre 97.5 2.2E-05 4.9E-10 86.8 0.2 151 527-678 122-286 (699)
198 PF13177 DNA_pol3_delta2: DNA 97.5 0.0014 3E-08 59.2 11.3 138 67-220 1-162 (162)
199 KOG1514 Origin recognition com 97.5 0.0034 7.5E-08 67.0 15.5 203 60-266 393-624 (767)
200 KOG0741 AAA+-type ATPase [Post 97.5 0.0029 6.2E-08 65.1 14.3 129 84-231 536-685 (744)
201 PRK10787 DNA-binding ATP-depen 97.5 0.0022 4.7E-08 72.7 15.1 160 62-232 321-506 (784)
202 PRK06964 DNA polymerase III su 97.5 0.0047 1E-07 62.5 15.9 90 163-262 131-224 (342)
203 COG1484 DnaC DNA replication p 97.5 0.00036 7.7E-09 67.8 7.7 37 85-121 104-140 (254)
204 COG2607 Predicted ATPase (AAA+ 97.4 0.0019 4.1E-08 59.7 11.5 116 63-202 60-183 (287)
205 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0015 3.1E-08 64.4 11.8 37 71-111 10-46 (262)
206 COG5238 RNA1 Ran GTPase-activa 97.4 1.9E-05 4.1E-10 73.6 -1.4 204 476-680 29-285 (388)
207 PLN03194 putative disease resi 97.4 0.00022 4.7E-09 63.6 5.1 47 7-53 131-178 (187)
208 PF07693 KAP_NTPase: KAP famil 97.4 0.0083 1.8E-07 61.5 17.7 46 68-113 1-47 (325)
209 TIGR00763 lon ATP-dependent pr 97.4 0.00086 1.9E-08 76.6 11.2 52 63-114 320-375 (775)
210 TIGR02639 ClpA ATP-dependent C 97.4 0.0024 5.3E-08 72.5 14.7 50 62-111 453-509 (731)
211 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0013 2.9E-08 68.6 11.1 173 62-257 189-396 (802)
212 KOG2228 Origin recognition com 97.4 0.0014 3E-08 63.6 10.4 171 61-232 22-219 (408)
213 KOG0744 AAA+-type ATPase [Post 97.4 0.00067 1.5E-08 65.2 7.9 36 86-121 177-216 (423)
214 KOG0735 AAA+-type ATPase [Post 97.4 0.0042 9.1E-08 66.3 14.3 159 86-262 431-615 (952)
215 COG0470 HolB ATPase involved i 97.3 0.0019 4.1E-08 66.3 12.0 141 64-221 2-170 (325)
216 cd01131 PilT Pilus retraction 97.3 0.00056 1.2E-08 64.1 7.1 110 87-205 2-112 (198)
217 PF04665 Pox_A32: Poxvirus A32 97.3 0.00033 7.2E-09 66.3 5.4 37 86-122 13-49 (241)
218 PRK11889 flhF flagellar biosyn 97.3 0.0046 1E-07 62.6 13.6 37 85-121 240-276 (436)
219 KOG2004 Mitochondrial ATP-depe 97.3 0.0011 2.3E-08 70.7 9.4 53 62-114 410-466 (906)
220 PF02562 PhoH: PhoH-like prote 97.3 0.00065 1.4E-08 62.9 7.0 128 68-203 5-157 (205)
221 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00077 1.7E-08 65.3 7.5 89 86-177 69-176 (274)
222 KOG4579 Leucine-rich repeat (L 97.3 9E-06 2E-10 67.7 -4.8 110 528-662 28-141 (177)
223 COG0542 clpA ATP-binding subun 97.3 0.0026 5.7E-08 70.0 12.2 150 62-231 169-345 (786)
224 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 81.5 1.7 130 550-681 121-264 (699)
225 PRK08939 primosomal protein Dn 97.3 0.0007 1.5E-08 67.7 7.2 55 67-121 135-191 (306)
226 PRK12608 transcription termina 97.2 0.0011 2.4E-08 66.8 8.5 100 73-176 121-232 (380)
227 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00043 9.3E-09 69.4 5.4 49 64-112 52-104 (361)
228 PHA00729 NTP-binding motif con 97.2 0.0014 3E-08 61.5 8.4 27 85-111 16-42 (226)
229 PRK10865 protein disaggregatio 97.2 0.0045 9.8E-08 71.2 14.2 52 62-113 567-625 (857)
230 COG1223 Predicted ATPase (AAA+ 97.2 0.0047 1E-07 57.7 11.4 172 63-257 121-319 (368)
231 KOG0730 AAA+-type ATPase [Post 97.2 0.0043 9.4E-08 65.8 12.7 173 65-259 436-639 (693)
232 COG0542 clpA ATP-binding subun 97.2 0.0024 5.2E-08 70.3 11.2 117 62-188 490-619 (786)
233 PRK08699 DNA polymerase III su 97.2 0.017 3.7E-07 58.4 16.6 86 164-259 113-202 (325)
234 PF13207 AAA_17: AAA domain; P 97.2 0.00034 7.5E-09 59.9 3.9 23 88-110 1-23 (121)
235 KOG4579 Leucine-rich repeat (L 97.2 3.4E-05 7.3E-10 64.4 -2.3 103 577-681 31-137 (177)
236 PRK06696 uridine kinase; Valid 97.2 0.00061 1.3E-08 65.4 6.0 47 67-113 2-49 (223)
237 COG1618 Predicted nucleotide k 97.2 0.00042 9E-09 59.8 4.1 35 87-121 6-41 (179)
238 TIGR01425 SRP54_euk signal rec 97.2 0.011 2.3E-07 61.5 15.2 36 85-120 99-134 (429)
239 PRK00771 signal recognition pa 97.2 0.0071 1.5E-07 63.4 13.9 36 85-120 94-129 (437)
240 KOG0731 AAA+-type ATPase conta 97.2 0.019 4.2E-07 63.0 17.3 179 60-259 308-520 (774)
241 PF00448 SRP54: SRP54-type pro 97.1 0.002 4.3E-08 60.0 8.6 36 86-121 1-36 (196)
242 PRK04132 replication factor C 97.1 0.01 2.3E-07 66.9 15.6 152 91-260 569-728 (846)
243 CHL00095 clpC Clp protease ATP 97.1 0.0026 5.7E-08 73.2 11.3 116 62-187 508-636 (821)
244 PF07728 AAA_5: AAA domain (dy 97.1 0.00098 2.1E-08 58.7 6.1 22 89-110 2-23 (139)
245 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0028 6.1E-08 72.6 11.2 52 62-113 565-623 (852)
246 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0019 4.1E-08 74.6 9.5 59 62-120 564-629 (852)
247 KOG0739 AAA+-type ATPase [Post 97.1 0.014 3.1E-07 55.7 13.4 175 62-258 132-336 (439)
248 PRK11608 pspF phage shock prot 97.1 0.0078 1.7E-07 61.2 12.7 47 63-109 6-52 (326)
249 PRK07667 uridine kinase; Provi 97.0 0.0013 2.9E-08 61.3 6.5 42 72-113 3-44 (193)
250 PF14532 Sigma54_activ_2: Sigm 97.0 0.00035 7.7E-09 61.3 2.3 46 66-111 1-46 (138)
251 PRK14974 cell division protein 97.0 0.015 3.2E-07 58.8 14.0 29 85-113 139-167 (336)
252 PRK04296 thymidine kinase; Pro 97.0 0.001 2.2E-08 61.9 5.4 107 87-203 3-117 (190)
253 PRK09361 radB DNA repair and r 97.0 0.0035 7.5E-08 60.4 9.2 49 74-122 11-59 (225)
254 PF03215 Rad17: Rad17 cell cyc 97.0 0.0066 1.4E-07 65.1 12.0 58 62-121 18-78 (519)
255 PRK10733 hflB ATP-dependent me 97.0 0.0083 1.8E-07 66.9 13.3 171 64-257 153-357 (644)
256 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0016 3.4E-08 57.7 6.0 113 87-202 3-138 (159)
257 cd01120 RecA-like_NTPases RecA 97.0 0.0025 5.4E-08 57.8 7.7 34 88-121 1-34 (165)
258 PTZ00494 tuzin-like protein; P 97.0 0.13 2.8E-06 52.5 19.8 179 42-232 346-544 (664)
259 KOG2035 Replication factor C, 97.0 0.026 5.6E-07 53.5 14.0 210 63-284 13-260 (351)
260 KOG2982 Uncharacterized conser 97.0 0.00038 8.3E-09 66.0 2.1 192 402-628 73-287 (418)
261 TIGR00064 ftsY signal recognit 97.0 0.0043 9.3E-08 61.0 9.4 38 84-121 70-107 (272)
262 PRK15429 formate hydrogenlyase 97.0 0.019 4.1E-07 65.1 15.9 50 61-110 374-423 (686)
263 PRK10867 signal recognition pa 97.0 0.017 3.6E-07 60.5 14.2 29 85-113 99-127 (433)
264 TIGR02974 phageshock_pspF psp 96.9 0.011 2.4E-07 60.1 12.6 46 65-110 1-46 (329)
265 TIGR01817 nifA Nif-specific re 96.9 0.0082 1.8E-07 65.9 12.4 50 61-110 194-243 (534)
266 COG4088 Predicted nucleotide k 96.9 0.0039 8.5E-08 56.2 7.5 32 87-118 2-33 (261)
267 PRK11034 clpA ATP-dependent Cl 96.9 0.0034 7.3E-08 70.6 8.8 50 62-111 457-513 (758)
268 KOG1970 Checkpoint RAD17-RFC c 96.9 0.011 2.3E-07 61.6 11.4 46 65-110 84-134 (634)
269 PRK08118 topology modulation p 96.9 0.0009 1.9E-08 60.7 3.5 32 88-119 3-37 (167)
270 KOG0743 AAA+-type ATPase [Post 96.8 0.019 4.1E-07 58.6 13.0 150 86-267 235-413 (457)
271 KOG1644 U2-associated snRNP A' 96.8 0.0018 3.9E-08 58.2 5.1 78 552-631 43-124 (233)
272 TIGR01650 PD_CobS cobaltochela 96.8 0.017 3.6E-07 57.6 12.4 48 63-114 45-92 (327)
273 PRK07261 topology modulation p 96.8 0.0056 1.2E-07 55.8 8.5 23 88-110 2-24 (171)
274 cd01121 Sms Sms (bacterial rad 96.8 0.0073 1.6E-07 62.1 10.0 50 72-121 68-117 (372)
275 TIGR00959 ffh signal recogniti 96.8 0.029 6.3E-07 58.7 14.3 27 85-111 98-124 (428)
276 cd01393 recA_like RecA is a b 96.8 0.0071 1.5E-07 58.3 9.3 49 74-122 7-61 (226)
277 PF01583 APS_kinase: Adenylyls 96.8 0.0022 4.7E-08 56.5 5.1 36 86-121 2-37 (156)
278 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0027 5.8E-08 62.3 6.1 114 71-200 68-182 (264)
279 PF13671 AAA_33: AAA domain; P 96.7 0.0061 1.3E-07 53.8 7.6 24 88-111 1-24 (143)
280 PRK05541 adenylylsulfate kinas 96.7 0.0022 4.8E-08 59.0 4.9 37 85-121 6-42 (176)
281 PF10236 DAP3: Mitochondrial r 96.7 0.045 9.7E-07 55.1 14.6 48 213-260 258-306 (309)
282 PRK15455 PrkA family serine pr 96.7 0.0021 4.5E-08 68.1 5.0 51 63-113 76-130 (644)
283 KOG2739 Leucine-rich acidic nu 96.7 0.0021 4.6E-08 60.4 4.4 87 592-679 61-155 (260)
284 COG0464 SpoVK ATPases of the A 96.7 0.016 3.5E-07 63.0 12.1 172 64-255 243-445 (494)
285 PRK05022 anaerobic nitric oxid 96.7 0.027 5.8E-07 61.3 13.6 51 61-111 185-235 (509)
286 KOG4341 F-box protein containi 96.6 5.3E-05 1.1E-09 75.2 -6.6 149 525-673 292-458 (483)
287 cd00544 CobU Adenosylcobinamid 96.6 0.037 8.1E-07 50.1 12.2 76 89-173 2-82 (169)
288 PRK12724 flagellar biosynthesi 96.6 0.038 8.3E-07 56.9 13.4 25 86-110 223-247 (432)
289 PRK06067 flagellar accessory p 96.6 0.0031 6.8E-08 61.1 5.5 49 73-121 12-60 (234)
290 PRK05800 cobU adenosylcobinami 96.6 0.026 5.6E-07 51.2 11.0 24 88-111 3-26 (170)
291 KOG1969 DNA replication checkp 96.6 0.006 1.3E-07 65.4 7.6 73 85-176 325-399 (877)
292 PF13238 AAA_18: AAA domain; P 96.6 0.0019 4.1E-08 55.9 3.5 22 89-110 1-22 (129)
293 TIGR00708 cobA cob(I)alamin ad 96.6 0.011 2.5E-07 52.9 8.4 115 86-202 5-140 (173)
294 KOG0652 26S proteasome regulat 96.6 0.057 1.2E-06 50.6 13.0 160 64-246 172-370 (424)
295 PF00485 PRK: Phosphoribulokin 96.6 0.0023 5E-08 59.9 4.1 26 88-113 1-26 (194)
296 PRK12723 flagellar biosynthesi 96.6 0.019 4.1E-07 59.2 10.9 27 85-111 173-199 (388)
297 PRK05703 flhF flagellar biosyn 96.5 0.071 1.5E-06 56.1 15.3 36 86-121 221-258 (424)
298 COG1066 Sms Predicted ATP-depe 96.5 0.017 3.7E-07 58.1 9.9 94 72-174 79-178 (456)
299 PF13604 AAA_30: AAA domain; P 96.5 0.0082 1.8E-07 56.1 7.5 116 71-204 6-133 (196)
300 PRK11388 DNA-binding transcrip 96.5 0.023 5.1E-07 63.9 12.5 49 62-110 324-372 (638)
301 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.013 2.8E-07 56.8 9.1 48 75-122 8-61 (235)
302 cd02019 NK Nucleoside/nucleoti 96.5 0.004 8.8E-08 46.8 4.3 23 88-110 1-23 (69)
303 PF08433 KTI12: Chromatin asso 96.5 0.0074 1.6E-07 59.1 7.3 35 87-121 2-36 (270)
304 KOG0733 Nuclear AAA ATPase (VC 96.5 0.033 7.2E-07 58.7 11.9 128 86-233 545-693 (802)
305 PF07726 AAA_3: ATPase family 96.5 0.0016 3.5E-08 54.6 2.1 30 88-117 1-30 (131)
306 PF03308 ArgK: ArgK protein; 96.4 0.0085 1.8E-07 56.8 6.9 57 71-128 14-70 (266)
307 TIGR01420 pilT_fam pilus retra 96.4 0.0061 1.3E-07 62.5 6.5 109 86-203 122-231 (343)
308 PF00910 RNA_helicase: RNA hel 96.4 0.002 4.2E-08 53.6 2.4 25 89-113 1-25 (107)
309 cd01394 radB RadB. The archaea 96.4 0.0073 1.6E-07 57.8 6.6 49 73-121 6-54 (218)
310 COG0572 Udk Uridine kinase [Nu 96.4 0.0042 9E-08 57.6 4.6 30 84-113 6-35 (218)
311 KOG1644 U2-associated snRNP A' 96.4 0.006 1.3E-07 55.0 5.3 102 573-676 42-149 (233)
312 PTZ00301 uridine kinase; Provi 96.4 0.0032 6.9E-08 59.2 3.8 28 86-113 3-30 (210)
313 PRK05342 clpX ATP-dependent pr 96.4 0.0099 2.1E-07 62.0 7.6 50 63-112 71-134 (412)
314 TIGR02237 recomb_radB DNA repa 96.3 0.0059 1.3E-07 58.0 5.5 45 78-122 4-48 (209)
315 PRK14722 flhF flagellar biosyn 96.3 0.026 5.7E-07 57.6 10.4 36 86-121 137-174 (374)
316 TIGR03499 FlhF flagellar biosy 96.3 0.017 3.6E-07 57.4 8.8 37 85-121 193-231 (282)
317 COG5238 RNA1 Ran GTPase-activa 96.3 0.0032 7E-08 59.2 3.4 183 497-681 27-256 (388)
318 COG1875 NYN ribonuclease and A 96.3 0.044 9.5E-07 54.3 11.1 118 83-203 242-389 (436)
319 PRK04040 adenylate kinase; Pro 96.3 0.0045 9.7E-08 57.3 4.3 26 86-111 2-27 (188)
320 PRK13531 regulatory ATPase Rav 96.3 0.011 2.4E-07 61.9 7.4 46 63-112 20-65 (498)
321 cd02027 APSK Adenosine 5'-phos 96.3 0.029 6.3E-07 49.8 9.2 25 88-112 1-25 (149)
322 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0059 1.3E-07 52.3 4.5 41 71-111 7-47 (133)
323 TIGR03600 phage_DnaB phage rep 96.3 0.13 2.8E-06 54.7 15.6 73 65-145 174-247 (421)
324 PRK06762 hypothetical protein; 96.3 0.0039 8.6E-08 56.7 3.7 25 86-110 2-26 (166)
325 TIGR03574 selen_PSTK L-seryl-t 96.2 0.006 1.3E-07 59.7 5.1 25 89-113 2-26 (249)
326 COG3854 SpoIIIAA ncharacterize 96.2 0.021 4.6E-07 52.6 7.9 110 87-202 138-253 (308)
327 PRK08233 hypothetical protein; 96.2 0.0039 8.5E-08 57.7 3.5 26 86-111 3-28 (182)
328 PRK05480 uridine/cytidine kina 96.2 0.0047 1E-07 58.7 4.0 27 84-110 4-30 (209)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.011 2.3E-07 52.2 6.1 35 86-121 26-60 (144)
330 COG0467 RAD55 RecA-superfamily 96.2 0.0087 1.9E-07 59.0 5.8 47 75-121 12-58 (260)
331 TIGR00416 sms DNA repair prote 96.2 0.025 5.4E-07 60.1 9.6 50 72-121 80-129 (454)
332 PF00437 T2SE: Type II/IV secr 96.2 0.0034 7.4E-08 62.3 3.0 127 64-202 105-232 (270)
333 PRK05986 cob(I)alamin adenolsy 96.2 0.014 3.1E-07 53.1 6.6 115 86-202 22-158 (191)
334 PF00006 ATP-synt_ab: ATP synt 96.2 0.0064 1.4E-07 57.2 4.5 81 87-175 16-116 (215)
335 TIGR00390 hslU ATP-dependent p 96.1 0.016 3.4E-07 59.5 7.5 52 63-114 12-75 (441)
336 PRK07132 DNA polymerase III su 96.1 0.5 1.1E-05 47.1 18.0 167 72-263 5-185 (299)
337 cd03238 ABC_UvrA The excision 96.1 0.023 5E-07 51.8 7.9 23 86-108 21-43 (176)
338 KOG0734 AAA+-type ATPase conta 96.1 0.041 8.9E-07 57.0 10.3 148 62-232 303-484 (752)
339 PRK03839 putative kinase; Prov 96.1 0.0048 1E-07 57.0 3.5 24 88-111 2-25 (180)
340 PRK11823 DNA repair protein Ra 96.1 0.031 6.7E-07 59.4 10.0 50 72-121 66-115 (446)
341 PRK10416 signal recognition pa 96.1 0.021 4.6E-07 57.5 8.3 36 85-120 113-148 (318)
342 PRK12727 flagellar biosynthesi 96.1 0.078 1.7E-06 56.3 12.5 55 67-121 327-387 (559)
343 PRK06547 hypothetical protein; 96.1 0.0091 2E-07 54.3 5.1 28 83-110 12-39 (172)
344 PF00406 ADK: Adenylate kinase 96.1 0.013 2.8E-07 52.3 6.0 20 91-110 1-20 (151)
345 COG0563 Adk Adenylate kinase a 96.1 0.018 3.9E-07 52.6 6.9 23 88-110 2-24 (178)
346 PRK09270 nucleoside triphospha 96.1 0.0092 2E-07 57.5 5.3 31 83-113 30-60 (229)
347 KOG1532 GTPase XAB1, interacts 96.1 0.0075 1.6E-07 56.8 4.4 37 84-120 17-53 (366)
348 COG0541 Ffh Signal recognition 96.0 0.36 7.8E-06 49.4 16.3 42 72-113 79-127 (451)
349 TIGR02238 recomb_DMC1 meiotic 96.0 0.036 7.8E-07 55.7 9.4 50 72-121 82-137 (313)
350 KOG0729 26S proteasome regulat 96.0 0.028 6.2E-07 52.7 7.9 48 64-111 178-236 (435)
351 cd03115 SRP The signal recogni 96.0 0.026 5.7E-07 51.7 7.9 34 88-121 2-35 (173)
352 PRK00625 shikimate kinase; Pro 96.0 0.0057 1.2E-07 55.6 3.4 24 88-111 2-25 (173)
353 PF03266 NTPase_1: NTPase; In 96.0 0.0083 1.8E-07 54.2 4.3 24 89-112 2-25 (168)
354 cd02028 UMPK_like Uridine mono 96.0 0.0081 1.7E-07 55.2 4.3 26 88-113 1-26 (179)
355 PTZ00088 adenylate kinase 1; P 96.0 0.022 4.8E-07 54.3 7.4 23 88-110 8-30 (229)
356 COG1703 ArgK Putative periplas 96.0 0.015 3.2E-07 56.0 6.0 55 73-128 38-92 (323)
357 PRK00889 adenylylsulfate kinas 96.0 0.01 2.2E-07 54.5 4.9 35 86-120 4-38 (175)
358 PF06068 TIP49: TIP49 C-termin 96.0 0.014 3.1E-07 58.2 6.0 60 60-119 21-83 (398)
359 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.013 2.8E-07 57.5 5.8 38 85-122 35-72 (259)
360 PRK12726 flagellar biosynthesi 95.9 0.064 1.4E-06 54.4 10.5 37 85-121 205-241 (407)
361 TIGR00235 udk uridine kinase. 95.9 0.0078 1.7E-07 57.0 4.0 28 84-111 4-31 (207)
362 PRK00131 aroK shikimate kinase 95.9 0.0071 1.5E-07 55.6 3.7 26 86-111 4-29 (175)
363 COG1224 TIP49 DNA helicase TIP 95.9 0.016 3.5E-07 56.9 6.1 58 58-115 34-94 (450)
364 COG1102 Cmk Cytidylate kinase 95.9 0.0066 1.4E-07 52.6 3.1 25 88-112 2-26 (179)
365 cd03223 ABCD_peroxisomal_ALDP 95.9 0.036 7.8E-07 50.3 8.0 26 86-111 27-52 (166)
366 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.017 3.7E-07 55.9 6.2 49 73-121 8-56 (237)
367 cd01130 VirB11-like_ATPase Typ 95.8 0.0083 1.8E-07 55.7 3.8 92 86-182 25-118 (186)
368 COG0468 RecA RecA/RadA recombi 95.8 0.03 6.6E-07 54.6 7.7 48 75-122 49-96 (279)
369 TIGR02858 spore_III_AA stage I 95.8 0.049 1.1E-06 53.4 9.2 115 84-205 109-232 (270)
370 PF03205 MobB: Molybdopterin g 95.8 0.015 3.2E-07 50.9 5.1 35 87-121 1-36 (140)
371 COG0465 HflB ATP-dependent Zn 95.8 0.068 1.5E-06 57.5 10.9 178 60-259 147-357 (596)
372 PRK03846 adenylylsulfate kinas 95.8 0.013 2.9E-07 54.9 5.1 38 84-121 22-59 (198)
373 PF06309 Torsin: Torsin; Inte 95.8 0.017 3.8E-07 48.4 5.1 47 64-110 26-77 (127)
374 PRK05201 hslU ATP-dependent pr 95.8 0.011 2.5E-07 60.5 4.8 51 63-113 15-77 (443)
375 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0086 1.9E-07 55.8 3.7 26 85-110 2-27 (188)
376 PRK05439 pantothenate kinase; 95.8 0.013 2.9E-07 58.2 5.1 30 83-112 83-112 (311)
377 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.013 2.8E-07 60.0 5.1 95 86-183 134-231 (358)
378 KOG2123 Uncharacterized conser 95.8 0.00052 1.1E-08 64.5 -4.4 99 456-557 20-123 (388)
379 cd00227 CPT Chloramphenicol (C 95.8 0.009 2E-07 54.8 3.7 25 87-111 3-27 (175)
380 PRK14528 adenylate kinase; Pro 95.8 0.03 6.6E-07 51.8 7.2 24 87-110 2-25 (186)
381 TIGR02788 VirB11 P-type DNA tr 95.7 0.01 2.2E-07 59.9 4.2 110 85-202 143-253 (308)
382 PRK10463 hydrogenase nickel in 95.7 0.019 4E-07 56.3 5.8 34 83-116 101-134 (290)
383 KOG2739 Leucine-rich acidic nu 95.7 0.0061 1.3E-07 57.4 2.4 87 592-681 39-130 (260)
384 cd03216 ABC_Carb_Monos_I This 95.7 0.013 2.9E-07 52.9 4.6 117 86-206 26-146 (163)
385 COG2884 FtsE Predicted ATPase 95.7 0.048 1E-06 48.9 7.7 52 156-209 147-204 (223)
386 cd03228 ABCC_MRP_Like The MRP 95.7 0.027 5.9E-07 51.4 6.7 35 86-121 28-62 (171)
387 PF00625 Guanylate_kin: Guanyl 95.7 0.012 2.6E-07 54.5 4.3 36 86-121 2-37 (183)
388 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.021 4.6E-07 58.5 6.3 101 84-199 60-165 (362)
389 COG4608 AppF ABC-type oligopep 95.7 0.025 5.4E-07 54.1 6.3 122 85-208 38-176 (268)
390 PRK13947 shikimate kinase; Pro 95.7 0.0091 2E-07 54.6 3.3 25 88-112 3-27 (171)
391 PF00158 Sigma54_activat: Sigm 95.7 0.0097 2.1E-07 53.9 3.4 45 65-109 1-45 (168)
392 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0079 1.7E-07 55.7 2.9 23 88-110 1-23 (183)
393 PRK15453 phosphoribulokinase; 95.6 0.017 3.7E-07 55.9 5.1 38 84-121 3-40 (290)
394 PRK10923 glnG nitrogen regulat 95.6 0.12 2.6E-06 56.0 12.4 49 62-110 137-185 (469)
395 cd03222 ABC_RNaseL_inhibitor T 95.6 0.022 4.8E-07 52.0 5.6 25 86-110 25-49 (177)
396 TIGR02782 TrbB_P P-type conjug 95.6 0.046 9.9E-07 54.7 8.3 88 87-182 133-222 (299)
397 PRK12678 transcription termina 95.6 0.02 4.4E-07 60.6 5.9 88 87-177 417-516 (672)
398 TIGR02533 type_II_gspE general 95.6 0.018 4E-07 61.6 5.8 114 73-202 232-346 (486)
399 cd01124 KaiC KaiC is a circadi 95.6 0.013 2.9E-07 54.4 4.3 33 89-121 2-34 (187)
400 PRK05973 replicative DNA helic 95.6 0.022 4.8E-07 54.3 5.8 37 85-121 63-99 (237)
401 PF13245 AAA_19: Part of AAA d 95.6 0.048 1E-06 41.7 6.5 24 86-109 10-33 (76)
402 PF08423 Rad51: Rad51; InterP 95.6 0.039 8.6E-07 53.8 7.7 48 74-121 26-79 (256)
403 cd02025 PanK Pantothenate kina 95.6 0.013 2.8E-07 55.8 4.2 24 88-111 1-24 (220)
404 CHL00206 ycf2 Ycf2; Provisiona 95.6 0.065 1.4E-06 64.5 10.5 26 85-110 1629-1654(2281)
405 PRK10751 molybdopterin-guanine 95.6 0.02 4.2E-07 51.7 5.0 29 85-113 5-33 (173)
406 COG0529 CysC Adenylylsulfate k 95.6 0.019 4.1E-07 50.7 4.7 37 84-120 21-57 (197)
407 cd02024 NRK1 Nicotinamide ribo 95.6 0.0088 1.9E-07 54.9 2.8 23 88-110 1-23 (187)
408 cd03214 ABC_Iron-Siderophores_ 95.6 0.03 6.6E-07 51.6 6.5 35 86-121 25-59 (180)
409 PRK14529 adenylate kinase; Pro 95.6 0.05 1.1E-06 51.5 7.9 90 89-182 3-95 (223)
410 KOG0738 AAA+-type ATPase [Post 95.6 0.52 1.1E-05 47.3 14.9 53 61-113 210-272 (491)
411 PRK09280 F0F1 ATP synthase sub 95.6 0.038 8.2E-07 57.9 7.7 88 86-176 144-250 (463)
412 COG1428 Deoxynucleoside kinase 95.6 0.011 2.3E-07 54.1 3.3 26 86-111 4-29 (216)
413 COG0003 ArsA Predicted ATPase 95.6 0.02 4.3E-07 57.3 5.5 36 86-121 2-37 (322)
414 cd03247 ABCC_cytochrome_bd The 95.6 0.055 1.2E-06 49.8 8.1 25 86-110 28-52 (178)
415 TIGR02012 tigrfam_recA protein 95.6 0.026 5.7E-07 56.4 6.3 49 73-121 41-90 (321)
416 cd00071 GMPK Guanosine monopho 95.6 0.0099 2.1E-07 51.9 2.9 26 89-114 2-27 (137)
417 KOG0736 Peroxisome assembly fa 95.5 0.56 1.2E-05 51.4 16.2 99 58-175 666-775 (953)
418 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.028 6.1E-07 54.2 6.3 48 74-121 8-55 (229)
419 KOG0727 26S proteasome regulat 95.5 0.021 4.5E-07 53.1 4.9 51 64-114 156-217 (408)
420 cd01122 GP4d_helicase GP4d_hel 95.5 0.092 2E-06 52.1 10.1 36 86-121 30-66 (271)
421 TIGR02525 plasmid_TraJ plasmid 95.5 0.032 6.9E-07 57.3 6.7 107 87-200 150-258 (372)
422 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.034 7.3E-07 53.9 6.5 87 86-177 69-174 (274)
423 cd02021 GntK Gluconate kinase 95.5 0.01 2.2E-07 52.9 2.8 23 88-110 1-23 (150)
424 PRK04328 hypothetical protein; 95.5 0.026 5.6E-07 55.0 5.8 48 74-121 11-58 (249)
425 cd01135 V_A-ATPase_B V/A-type 95.5 0.055 1.2E-06 52.5 7.8 88 87-178 70-180 (276)
426 COG3640 CooC CO dehydrogenase 95.5 0.022 4.8E-07 52.8 4.9 38 88-125 2-39 (255)
427 PRK05537 bifunctional sulfate 95.5 0.028 6.2E-07 61.4 6.6 51 62-112 368-418 (568)
428 PRK09435 membrane ATPase/prote 95.5 0.033 7.2E-07 56.1 6.6 41 73-113 43-83 (332)
429 PRK13765 ATP-dependent proteas 95.4 0.023 4.9E-07 62.6 5.8 61 58-122 26-87 (637)
430 cd03246 ABCC_Protease_Secretio 95.4 0.051 1.1E-06 49.7 7.4 34 86-120 28-61 (173)
431 PF02374 ArsA_ATPase: Anion-tr 95.4 0.022 4.8E-07 57.1 5.3 35 87-121 2-36 (305)
432 PF01078 Mg_chelatase: Magnesi 95.4 0.02 4.3E-07 52.9 4.5 43 63-109 3-45 (206)
433 PRK06217 hypothetical protein; 95.4 0.012 2.5E-07 54.5 3.1 24 88-111 3-26 (183)
434 cd00983 recA RecA is a bacter 95.4 0.03 6.6E-07 56.0 6.1 49 73-121 41-90 (325)
435 COG2804 PulE Type II secretory 95.4 0.045 9.9E-07 57.0 7.5 112 72-199 247-359 (500)
436 cd02020 CMPK Cytidine monophos 95.4 0.012 2.7E-07 52.1 3.1 24 88-111 1-24 (147)
437 PRK14738 gmk guanylate kinase; 95.4 0.015 3.3E-07 54.9 3.8 29 81-109 8-36 (206)
438 cd02023 UMPK Uridine monophosp 95.4 0.011 2.4E-07 55.6 2.8 23 88-110 1-23 (198)
439 PRK13949 shikimate kinase; Pro 95.4 0.014 2.9E-07 53.1 3.2 24 88-111 3-26 (169)
440 cd02034 CooC The accessory pro 95.3 0.037 7.9E-07 46.6 5.5 33 89-121 2-34 (116)
441 TIGR02322 phosphon_PhnN phosph 95.3 0.014 3.1E-07 53.8 3.4 25 87-111 2-26 (179)
442 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.027 5.9E-07 56.2 5.4 52 62-113 60-115 (358)
443 KOG0735 AAA+-type ATPase [Post 95.3 0.21 4.5E-06 54.0 12.0 172 65-259 669-872 (952)
444 PRK12597 F0F1 ATP synthase sub 95.3 0.052 1.1E-06 57.1 7.7 87 86-176 143-249 (461)
445 COG1936 Predicted nucleotide k 95.3 0.013 2.9E-07 51.6 2.8 20 88-107 2-21 (180)
446 PRK13948 shikimate kinase; Pro 95.3 0.015 3.3E-07 53.3 3.3 28 85-112 9-36 (182)
447 PHA02244 ATPase-like protein 95.3 0.016 3.5E-07 58.4 3.7 47 62-112 95-145 (383)
448 cd00464 SK Shikimate kinase (S 95.3 0.016 3.4E-07 51.9 3.4 23 89-111 2-24 (154)
449 PRK12339 2-phosphoglycerate ki 95.3 0.017 3.8E-07 53.7 3.7 25 86-110 3-27 (197)
450 TIGR01351 adk adenylate kinase 95.3 0.051 1.1E-06 51.5 7.0 22 89-110 2-23 (210)
451 KOG1051 Chaperone HSP104 and r 95.3 0.29 6.2E-06 55.4 13.6 101 63-176 562-672 (898)
452 PRK13768 GTPase; Provisional 95.2 0.025 5.4E-07 55.2 4.9 35 87-121 3-37 (253)
453 PRK10436 hypothetical protein; 95.2 0.036 7.8E-07 58.7 6.4 99 72-183 207-306 (462)
454 COG5635 Predicted NTPase (NACH 95.2 0.033 7.1E-07 64.4 6.6 195 87-283 223-448 (824)
455 TIGR01287 nifH nitrogenase iro 95.2 0.021 4.6E-07 56.8 4.4 35 87-121 1-35 (275)
456 KOG0736 Peroxisome assembly fa 95.2 0.19 4.2E-06 54.7 11.5 171 65-258 403-599 (953)
457 PRK14493 putative bifunctional 95.2 0.024 5.1E-07 55.7 4.6 34 87-121 2-35 (274)
458 TIGR01039 atpD ATP synthase, F 95.2 0.064 1.4E-06 56.0 7.9 89 86-177 143-250 (461)
459 PRK09354 recA recombinase A; P 95.2 0.037 8E-07 55.9 6.0 51 72-122 45-96 (349)
460 PRK13946 shikimate kinase; Pro 95.2 0.018 3.8E-07 53.4 3.4 26 86-111 10-35 (184)
461 PLN02674 adenylate kinase 95.2 0.08 1.7E-06 50.8 7.9 25 86-110 31-55 (244)
462 PRK14530 adenylate kinase; Pro 95.2 0.017 3.8E-07 55.0 3.4 23 88-110 5-27 (215)
463 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.082 1.8E-06 50.1 7.9 24 86-109 29-52 (213)
464 PF03029 ATP_bind_1: Conserved 95.1 0.024 5.1E-07 54.6 4.3 30 91-120 1-30 (238)
465 cd03230 ABC_DR_subfamily_A Thi 95.1 0.049 1.1E-06 49.9 6.2 25 86-110 26-50 (173)
466 COG0194 Gmk Guanylate kinase [ 95.1 0.026 5.6E-07 50.6 4.1 25 86-110 4-28 (191)
467 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.037 8.1E-07 49.7 5.3 116 87-207 26-145 (157)
468 PRK08533 flagellar accessory p 95.1 0.029 6.2E-07 53.9 4.8 37 85-121 23-59 (230)
469 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.053 1.1E-06 51.8 6.4 50 155-206 148-203 (254)
470 PRK08972 fliI flagellum-specif 95.1 0.034 7.4E-07 57.7 5.6 86 86-177 162-265 (444)
471 PRK15115 response regulator Gl 95.1 0.48 1E-05 50.9 14.8 48 63-110 134-181 (444)
472 TIGR00176 mobB molybdopterin-g 95.1 0.025 5.5E-07 50.4 4.1 26 88-113 1-26 (155)
473 TIGR00073 hypB hydrogenase acc 95.1 0.031 6.8E-07 52.8 5.0 30 83-112 19-48 (207)
474 COG1419 FlhF Flagellar GTP-bin 95.1 0.11 2.3E-06 53.0 8.8 36 86-121 203-240 (407)
475 PF00154 RecA: recA bacterial 95.1 0.11 2.3E-06 51.9 8.8 50 72-121 38-88 (322)
476 TIGR02902 spore_lonB ATP-depen 95.1 0.023 4.9E-07 61.9 4.4 49 60-110 62-110 (531)
477 COG2019 AdkA Archaeal adenylat 95.1 0.023 5.1E-07 49.6 3.5 25 86-110 4-28 (189)
478 PRK14527 adenylate kinase; Pro 95.0 0.022 4.7E-07 53.2 3.7 27 85-111 5-31 (191)
479 smart00534 MUTSac ATPase domai 95.0 0.012 2.6E-07 54.5 2.0 21 88-108 1-21 (185)
480 PRK14737 gmk guanylate kinase; 95.0 0.021 4.5E-07 52.8 3.5 26 85-110 3-28 (186)
481 COG0378 HypB Ni2+-binding GTPa 95.0 0.034 7.3E-07 50.2 4.6 37 86-122 13-49 (202)
482 PLN02318 phosphoribulokinase/u 95.0 0.026 5.7E-07 60.3 4.6 29 82-110 61-89 (656)
483 PRK07276 DNA polymerase III su 95.0 1 2.3E-05 44.5 15.4 67 163-230 103-173 (290)
484 TIGR01313 therm_gnt_kin carboh 95.0 0.016 3.4E-07 52.6 2.6 23 89-111 1-23 (163)
485 COG0714 MoxR-like ATPases [Gen 95.0 0.033 7.2E-07 56.9 5.3 51 63-117 24-74 (329)
486 PHA02774 E1; Provisional 95.0 0.081 1.8E-06 56.5 8.1 41 70-111 419-459 (613)
487 COG2842 Uncharacterized ATPase 95.0 0.14 3.1E-06 49.6 9.0 120 56-185 65-188 (297)
488 KOG0651 26S proteasome regulat 95.0 0.064 1.4E-06 51.9 6.6 30 85-114 165-194 (388)
489 COG0703 AroK Shikimate kinase 95.0 0.022 4.7E-07 50.8 3.3 28 87-114 3-30 (172)
490 PRK14526 adenylate kinase; Pro 95.0 0.089 1.9E-06 49.6 7.6 22 89-110 3-24 (211)
491 PRK13407 bchI magnesium chelat 95.0 0.025 5.3E-07 57.2 4.1 50 59-110 4-53 (334)
492 TIGR00764 lon_rel lon-related 95.0 0.031 6.8E-07 61.6 5.3 60 59-122 14-74 (608)
493 PLN02348 phosphoribulokinase 95.0 0.026 5.6E-07 57.5 4.2 32 82-113 45-76 (395)
494 cd03287 ABC_MSH3_euk MutS3 hom 95.0 0.023 5E-07 53.9 3.7 24 85-108 30-53 (222)
495 TIGR00750 lao LAO/AO transport 95.0 0.054 1.2E-06 54.4 6.6 39 75-113 23-61 (300)
496 PLN02200 adenylate kinase fami 95.0 0.023 5.1E-07 54.6 3.7 26 85-110 42-67 (234)
497 PRK05057 aroK shikimate kinase 95.0 0.022 4.7E-07 52.0 3.4 25 87-111 5-29 (172)
498 TIGR00382 clpX endopeptidase C 95.0 0.036 7.7E-07 57.6 5.2 52 62-113 76-143 (413)
499 PF06745 KaiC: KaiC; InterPro 95.0 0.03 6.5E-07 53.9 4.5 47 75-121 8-55 (226)
500 KOG3347 Predicted nucleotide k 95.0 0.02 4.2E-07 48.9 2.7 25 86-110 7-31 (176)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-83 Score=750.16 Aligned_cols=666 Identities=36% Similarity=0.585 Sum_probs=559.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCchhHHHHHHHHHHHhhcccccccccCCCCCcccchhhHHHHHHhhcCCCCCeeE
Q 048627 9 NTEKLQSWRNALKEAASLSGFHSLNMRRESELINEVVNHILKRLDEVFQLRDNKNQLVGVESTVEEIESLLGVESKDVWA 88 (689)
Q Consensus 9 ~~~~~~~w~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~ 88 (689)
+.+++++||+||++||+++||+..++.+|++++++|+++|.+++. .+++.+.+.+|||+++++++..++....+++++
T Consensus 132 ~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~--~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~v 209 (1153)
T PLN03210 132 TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLN--LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRM 209 (1153)
T ss_pred chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhc--cccCcccccccchHHHHHHHHHHHccccCceEE
Confidence 678999999999999999999998899999999999999999998 777788889999999999999999877778999
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccccceEEeeec--cchh---c-----CCCChHHHHHHHHHHhcCCC-CCCcchHHH
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENV--RVES---Q-----RPGGLAWLRQKLLLNLLKDE-NVIPDIDLN 157 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~---~-----~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l 157 (689)
|+|+||||+||||||+.+|+++..+|++.+|+... .... . .......++++++.++.... ........+
T Consensus 210 vgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~ 289 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAM 289 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHH
Confidence 99999999999999999999999999999988632 1110 0 00112345666666665432 222344678
Q ss_pred HHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCC
Q 048627 158 FRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEVEALEYHHALELFSRHAFKRNH 237 (689)
Q Consensus 158 ~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 237 (689)
+++++++|+||||||||+..+++.+.....++++|++||||||+..++..++..++|+++.+++++|++||+++||+...
T Consensus 290 ~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~ 369 (1153)
T PLN03210 290 EERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS 369 (1153)
T ss_pred HHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999888888999999999999999987777889999999999999999999998877
Q ss_pred CChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCH-HHHHHhhhccccc
Q 048627 238 PDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREKEVWESAINKLQRILHPSIREVLKISYDGLDD-KEKNIFLDVACFF 316 (689)
Q Consensus 238 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~la~f~ 316 (689)
++..+.+++++|+++|+|+|||++++|+.|++++..+|+.++++++......+..++++||+.|++ .+|.+|+++|+|+
T Consensus 370 ~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff 449 (1153)
T PLN03210 370 PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLF 449 (1153)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhc
Confidence 777888999999999999999999999999999999999999999988888999999999999976 5899999999999
Q ss_pred CCcCHHHHHHHHHhcCCCchhchhHHhhcCceEEccCCeEEecHHHHHHHHHHHhhhcCCCCCcccCCCchhhHHHhhhc
Q 048627 317 RGEGVNLVMKFFDASGFYPEIGINVLVDKSLIAIDSYNKITMHDLLQELGREIVRQESINPENRGRLWHHEDTYEVVTYN 396 (689)
Q Consensus 317 ~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~H~lv~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 396 (689)
.+.+.+.+..++..++..+..+++.|++++|++.. .+.+.|||++|++|++++.+++.+|++++++|.+.++.+++.++
T Consensus 450 ~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~ 528 (1153)
T PLN03210 450 NGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDN 528 (1153)
T ss_pred CCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhC
Confidence 99999999888888888888899999999999987 57899999999999999999888899999999999999999999
Q ss_pred cCCcceeeEEeccCcccccccChhhhhCCCCcceEEeccccC------CCCCcccccccCcccccceeEEEecCCCCCCC
Q 048627 397 TGTEKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSF------NGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL 470 (689)
Q Consensus 397 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l 470 (689)
.++..+++|+++........+.+..|.+|++|++|.+..+.. ...+|..+..++ .+|++|.|.++++..+
T Consensus 529 ~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 529 TGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLRCM 604 (1153)
T ss_pred cccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCCCC
Confidence 999999999999998888889999999999999999976532 234566677777 6899999999999999
Q ss_pred CCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCC
Q 048627 471 PSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNL 550 (689)
Q Consensus 471 p~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 550 (689)
|..+.+.+|++|++.+|.+..+|..+..+++|+.++++++..+ ..+|. ++.+++|+.|+|++|..+..+|..++++
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD---LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc---cccCCcccEEEecCCCCccccchhhhcc
Confidence 9999999999999999999999999999999999999988766 66653 5667778888888777777777777777
Q ss_pred CCCCEEeccCCCCCCCCCCCC-c---------------------CCCcEEEcccccccccCcccc---------------
Q 048627 551 EFLTKLDLSGCSKLKRLPEIS-S---------------------GNISWLLLRGSAIEELPSSIE--------------- 593 (689)
Q Consensus 551 ~~L~~L~l~~~~~l~~~p~~~-~---------------------~~L~~L~l~~~~l~~l~~~i~--------------- 593 (689)
++|+.|++++|..++.+|... + .+|+.|++++|.+..+|..+.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 777777777776666665431 1 345566666666555554320
Q ss_pred ---------------cCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCC--------------
Q 048627 594 ---------------RQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLS-------------- 644 (689)
Q Consensus 594 ---------------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-------------- 644 (689)
..++|+.|++++|.....+|..++++++|+.|+|++|..++.+|..+ .++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 12356667777776667777777777777777777777766666543 233
Q ss_pred -------CCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCCC
Q 048627 645 -------SPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPKR 686 (689)
Q Consensus 645 -------~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~ 686 (689)
+|+.|++++|.++.+|.++..+++|+.|++.+|+.+..+|..
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred cccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 455566666667788888999999999999999999888753
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-58 Score=509.72 Aligned_cols=430 Identities=25% Similarity=0.338 Sum_probs=323.9
Q ss_pred ccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH---hhccccceEEeeeccchhcCCCChHHHHHHHHH
Q 048627 66 VGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK---ISGDFEGTCFLENVRVESQRPGGLAWLRQKLLL 142 (689)
Q Consensus 66 vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 142 (689)
||.+..++++.+.|.... ..+++|+||||+||||||++++++ ++++|+.++|+. +|+. +....++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHH
Confidence 999999999999997443 389999999999999999999987 568999999999 6766 899999999999
Q ss_pred HhcCCCCC------CcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhh-cCcceEEE
Q 048627 143 NLLKDENV------IPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN-WEVRKIYE 215 (689)
Q Consensus 143 ~~~~~~~~------~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~-~~~~~~~~ 215 (689)
.+...+.. ......+.+.|.++|++||+||||+..+|+.+..+++....||+|++|||+..|+.. +++...++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 87763311 256778888999999999999999999999999999988889999999999999998 77788999
Q ss_pred cCCCCHHHHHHHHHHhccCCC-CCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCC-CHHHHHHHHHHHHhcC-------
Q 048627 216 VEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKR-EKEVWESAINKLQRIL------- 286 (689)
Q Consensus 216 l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~~~~l~~l~~~~------- 286 (689)
++.|+.+|||+||.+.+|... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+....
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998763 3334578999999999999999999999999976 6679999999886651
Q ss_pred CchHHHHHHHHhcCCCHHHHHHhhhcccccCCc--CHHHHHHHHHhcCCC------------chhchhHHhhcCceEEcc
Q 048627 287 HPSIREVLKISYDGLDDKEKNIFLDVACFFRGE--GVNLVMKFFDASGFY------------PEIGINVLVDKSLIAIDS 352 (689)
Q Consensus 287 ~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~l~~~~~~~------------~~~~l~~L~~~~li~~~~ 352 (689)
.+.+..++..||+.|+++.|.||+|||.||+++ +.+.++.+|.++|+. +..++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 356889999999999988999999999999996 457799999999964 345699999999998764
Q ss_pred ----CCeEEecHHHHHHHHHHHhhhcCCCCCcccCCCch-hhHHHhhhccCCcceeeEEeccCccc--------------
Q 048627 353 ----YNKITMHDLLQELGREIVRQESINPENRGRLWHHE-DTYEVVTYNTGTEKIEGICLDMSKAK-------------- 413 (689)
Q Consensus 353 ----~~~~~~H~lv~~~a~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 413 (689)
...+.|||++|++|.+++++.+....+ ...... ...+ .........++++++.....+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccc-cccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 267899999999999999954311111 000000 0000 111111223333333322221
Q ss_pred --------ccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeec
Q 048627 414 --------DIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEV 484 (689)
Q Consensus 414 --------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l 484 (689)
-...+...|..|+.|++|++++|.-.+.+|..++.+- +||||++.++.+..+|..+ .+..|.+|++
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-----~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-----HLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-----hhhcccccCCCccccchHHHHHHhhheecc
Confidence 1223344466666666666666555555666666654 6666666666666666666 5666666666
Q ss_pred CCCCc-cccCcccccCccchhhccccC
Q 048627 485 PDNNI-EQLGDCVKHYSKLNRIIHAAC 510 (689)
Q Consensus 485 ~~~~i-~~l~~~~~~l~~L~~l~l~~~ 510 (689)
..+.. ...+.....+.+|++|.+...
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccchhhhcccccEEEeecc
Confidence 65532 233344444666666655544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.1e-38 Score=316.11 Aligned_cols=264 Identities=30% Similarity=0.456 Sum_probs=209.4
Q ss_pred chhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH--hhccccceEEeeeccchhcCCCChHHHHHHHHHHhc
Q 048627 68 VESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK--ISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL 145 (689)
Q Consensus 68 r~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 145 (689)
||.++++|.+.|....++.++|+|+|+||+||||||.+++++ +.++|+.++|+.. +.. .....+..+++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~-~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKN-PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccc-ccccccccccccccc
Confidence 789999999999876688999999999999999999999988 8899999999883 333 455788888888887
Q ss_pred CCCCC-------CcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhhcCc-ceEEEcC
Q 048627 146 KDENV-------IPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEV-RKIYEVE 217 (689)
Q Consensus 146 ~~~~~-------~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~~~~-~~~~~l~ 217 (689)
..... ......+.+.+.++++||||||||+...|+.+...++....|++||||||+..++..... ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66321 156788889999999999999999999998888877777789999999999988776544 6789999
Q ss_pred CCCHHHHHHHHHHhccCCC-CCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCC-CHHHHHHHHHHHHhcC------Cch
Q 048627 218 ALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKR-EKEVWESAINKLQRIL------HPS 289 (689)
Q Consensus 218 ~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~~~~l~~l~~~~------~~~ 289 (689)
+|+.++|++||.+.++... .......+.+++|+++|+|+|+|++++|++++.+ +..+|+..++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987654 2334456689999999999999999999999643 5678999988876553 467
Q ss_pred HHHHHHHHhcCCCHHHHHHhhhcccccCCc--CHHHHHHHHHhcCCCch
Q 048627 290 IREVLKISYDGLDDKEKNIFLDVACFFRGE--GVNLVMKFFDASGFYPE 336 (689)
Q Consensus 290 ~~~~l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~l~~~~~~~~~ 336 (689)
+..++..||+.|+++.|.||.+||+||.++ +.+.++.+|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999985 47889999999887544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.2e-23 Score=245.65 Aligned_cols=275 Identities=20% Similarity=0.241 Sum_probs=148.7
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCccccc-ccCcccccceeEEEecCCCCCCCCCCCCcCC
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVS-YLQDPAFAEVKYFHWHGYPLKSLPSNLSAEK 478 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~ 478 (689)
.++..+.+...... ...+..|..+++|+.|++++|.+.+.+|..+. .++ +|++|++++|.+....+...+++
T Consensus 69 ~~v~~L~L~~~~i~--~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~-----~L~~L~Ls~n~l~~~~p~~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNIS--GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS-----SLRYLNLSNNNFTGSIPRGSIPN 141 (968)
T ss_pred CcEEEEEecCCCcc--ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC-----CCCEEECcCCccccccCccccCC
Confidence 45677766554332 23466788888899999988888877776544 443 66666666666543222234556
Q ss_pred ceeeecCCCCcc-ccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEe
Q 048627 479 LVFLEVPDNNIE-QLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLD 557 (689)
Q Consensus 479 L~~L~l~~~~i~-~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 557 (689)
|++|++++|.+. .+|..+..+.+|++|+++++... ..+ +..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCccc-ccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 666666666664 44555666666666666655322 222 23455566666666666655555555555566666666
Q ss_pred ccCCCCCCCCCCCC--cCCCcEEEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCC
Q 048627 558 LSGCSKLKRLPEIS--SGNISWLLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 558 l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 634 (689)
+++|.....+|... ..+|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|...+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 66555444444321 244555555555443 344445555555555555554444444444445555555555444444
Q ss_pred ccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCCC
Q 048627 635 RLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 635 ~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 44444444444444444444443 334444444444444444444444333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2e-22 Score=237.61 Aligned_cols=261 Identities=20% Similarity=0.294 Sum_probs=136.8
Q ss_pred hhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCC-CCCCCC-CcCCceeeecCCCCcc-ccCcc
Q 048627 419 PKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLK-SLPSNL-SAEKLVFLEVPDNNIE-QLGDC 495 (689)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~-~lp~~~-~~~~L~~L~l~~~~i~-~l~~~ 495 (689)
+..++.+++|++|++++|.+.+.+|..+..++ +|++|++.+|.+. .+|..+ .+.+|++|++++|.+. .+|..
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence 34455555555555555555554454444443 4444444444432 234333 4445555555554443 33444
Q ss_pred cccCccchhhccccCccccccCC----------------------CCCCCCCCCcccEEeccCCCCCcccCccCCCCCCC
Q 048627 496 VKHYSKLNRIIHAACNKLIAKTP----------------------NPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFL 553 (689)
Q Consensus 496 ~~~l~~L~~l~l~~~~~l~~~~~----------------------~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 553 (689)
+..+++|++|+++++... ..+| .+..+.++++|++|++++|.+.+.+|..+..+++|
T Consensus 232 l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred HhcCCCCCEEECcCceec-cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 444455555544443311 1111 12233444444455554444444444444444555
Q ss_pred CEEeccCCCCCCCCCCCC--cCCCcEEEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecC
Q 048627 554 TKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGC 630 (689)
Q Consensus 554 ~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 630 (689)
++|++++|...+..|... ..+|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 555555444433333221 234555555555554 44555555555555555555555555555555556666666665
Q ss_pred CCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 631 SNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 631 ~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
...+.+|..++.+++|+.|++++|+++ .+|..+.++++|+.|++++|.+.+.+|.
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 555666666666677777777777766 6666677777777777777777766653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.4e-24 Score=214.33 Aligned_cols=276 Identities=21% Similarity=0.298 Sum_probs=206.7
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~ 478 (689)
.++++.+..+..+..+++ ..+-++..|..|+++.|++... |..+.+-. ++-.|+++.|.+..||... .+..
T Consensus 79 ~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~Ev-P~~LE~AK-----n~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLREV-PTNLEYAK-----NSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhHHHhhhccccccCCCC-chhcccccceeeecchhhhhhc-chhhhhhc-----CcEEEEcccCccccCCchHHHhhHh
Confidence 444444444444444443 3455677777777777766543 55555544 5566677777777777654 6667
Q ss_pred ceeeecCCCCccccCcccccCccchhhccccCcccc---ccCC-------------------CCCCCCCCCcccEEeccC
Q 048627 479 LVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLI---AKTP-------------------NPTLMPRLNKLVFLNLRG 536 (689)
Q Consensus 479 L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~---~~~~-------------------~~~~~~~l~~L~~L~l~~ 536 (689)
|-+|++++|++..+|+.+..+.+|++|.++++.-.- ..+| .|..+..+.+|..+|++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 777777777777777766666666666665542100 1111 133555668888888887
Q ss_pred CCCCcccCccCCCCCCCCEEeccCCCCCC-CCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCC-CCCCc
Q 048627 537 SKSLKSLPSEIFNLEFLTKLDLSGCSKLK-RLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMF-KSLPS 614 (689)
Q Consensus 537 ~~~~~~~p~~l~~l~~L~~L~l~~~~~l~-~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~-~~lp~ 614 (689)
|+ +..+|+.+.++++|+.|+||+|...+ .+....+.+|++|+++.|.++.+|..+.+|++|+.|.+.+|.+. ..+|+
T Consensus 232 N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 232 NN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred cC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 76 77888888899999999999987432 22333457899999999999999999999999999999999875 47999
Q ss_pred ccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 615 SLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 615 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+||+|.+|+++..++ +.+.-+|+.++.+.+|+.|.|.+|.+.++|..|--++.|+.|++..|+.+.-.|+
T Consensus 311 GIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999987 5688999999999999999999999999999999999999999999999985443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=9.5e-22 Score=198.27 Aligned_cols=248 Identities=24% Similarity=0.335 Sum_probs=206.2
Q ss_pred CCCcceEEeccccCCC-CCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccc
Q 048627 425 MCKLRFLKFYSSSFNG-ENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKL 502 (689)
Q Consensus 425 ~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L 502 (689)
++-.|-.++++|.|+| ..|..+..++ .+++|.+....+..+|... .+.+|++|.+.+|++..+...+..++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt-----~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMT-----QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhh-----heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3445667888898884 5677777776 8999999999999999988 7899999999999999999999999999
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCC---cEEE
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI---SWLL 579 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L---~~L~ 579 (689)
+.+.+..++ + .....|..+-.+..|+.|||+.|. +.+.|..+..-+++-.|+||+|+ +..+|...+-+| -.|+
T Consensus 81 Rsv~~R~N~-L-KnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 81 RSVIVRDNN-L-KNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred HHHhhhccc-c-ccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhc
Confidence 999988754 4 455556688899999999999998 88999999999999999999977 788888776665 5789
Q ss_pred cccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC-CCccCcccCCCCCCCEEEccCCCCcc
Q 048627 580 LRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN-LRRLPECLGQLSSPILLNLAETNIER 658 (689)
Q Consensus 580 l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~l~~~~l~~ 658 (689)
|++|.+..+|..+..|.+|++|.|++|.+...--..+-.+++|++|.+++.+. +..+|.++..+.+|..++++.|++..
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 99999999999999999999999999987432222333477888888887554 35688888888888888888888888
Q ss_pred ccchhhccCCCcEEecCCCCCCC
Q 048627 659 IPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 659 lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+|.++.++++|+.|++++|++++
T Consensus 237 vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee
Confidence 88888888888888888888753
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.5e-19 Score=181.35 Aligned_cols=257 Identities=20% Similarity=0.184 Sum_probs=193.3
Q ss_pred ChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCcccc-Cc
Q 048627 418 NPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQL-GD 494 (689)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l-~~ 494 (689)
+..+|..-.+++.|++++|.++......+..+. .|-.|.+..|.++.+|... .+++|+.|++..|+|+.. +-
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-----sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-----SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccc-----hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 344566667788888888887765555555554 6677778888888888754 478888888888888766 66
Q ss_pred ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-C-c
Q 048627 495 CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-S-S 572 (689)
Q Consensus 495 ~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-~-~ 572 (689)
.+..+..|+.|.+..++ + .++.+ ..|..+.++++|+|..|.....--.++..+++|+.|+++.|.....-++. . .
T Consensus 240 tFqgL~Sl~nlklqrN~-I-~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRND-I-SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhcCchhhhhhhhhhcC-c-ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 67788888888877654 2 23333 36677888999999988866555567888999999999988743322222 1 2
Q ss_pred CCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccC---cccCCCCCCCE
Q 048627 573 GNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLP---ECLGQLSSPIL 648 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~ 648 (689)
..|++|+|++|.++++++ ++.-|..|++|.|+.|++..---..+..+++|++|+|++|.....+- ..+..+++|++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 678999999999998876 57788899999999998733333356678999999999987765543 34667999999
Q ss_pred EEccCCCCccccc-hhhccCCCcEEecCCCCCCCC
Q 048627 649 LNLAETNIERIPK-SIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 649 L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~ 682 (689)
|.+.+|+++++|. .+..++.|+.|+|.+|.+-..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 9999999998884 578899999999999987543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=6.9e-20 Score=175.95 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=70.6
Q ss_pred CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC----------------------CCccCcc-cCCCCC
Q 048627 589 PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN----------------------LRRLPEC-LGQLSS 645 (689)
Q Consensus 589 ~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~----------------------~~~~p~~-l~~l~~ 645 (689)
|..+..+++|..|++++|.+ ..+|..++.+..|+.|+++.|.+ ++.++.. ++++.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 33445566777777776654 66777777777777777776532 3455544 888999
Q ss_pred CCEEEccCCCCccccchhhccCCCcEEecCCCCCC
Q 048627 646 PILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 646 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l 680 (689)
|..||+.+|.+..+|..++++.+|+.|.+++|++.
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999999999999999999999999987
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-18 Score=174.50 Aligned_cols=274 Identities=20% Similarity=0.161 Sum_probs=207.9
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcC
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAE 477 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~ 477 (689)
.++..+.+..+.. -.+..+.++-++-||+|+++.|.++......+.. -.++++|++.+|.++.+.... ++.
T Consensus 125 ghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~-----~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 125 GHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPA-----KVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred cceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC-----CCCceEEeeccccccccccccccccc
Confidence 3455565554433 3456778888899999999998776642222222 247899999999998887644 677
Q ss_pred CceeeecCCCCccccCcc-cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEE
Q 048627 478 KLVFLEVPDNNIEQLGDC-VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKL 556 (689)
Q Consensus 478 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 556 (689)
+|.+|.+++|+++.+|.. ++++++|+.|++..+. ..+-....|..|++|+.|.|..|....---..+..+.++++|
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~---irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR---IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccc---eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 999999999999999876 6679999999998764 233334567889999999999988543333346678999999
Q ss_pred eccCCCCCCCCCCC---CcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC
Q 048627 557 DLSGCSKLKRLPEI---SSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN 632 (689)
Q Consensus 557 ~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 632 (689)
+|..|+.. ..... .+..|+.|++++|.|..+ +.++...++|+.|+|++|.+..--+..+..|..|++|+|++|..
T Consensus 275 ~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 275 NLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 99998743 33322 236789999999999866 56788899999999999999777777888999999999999765
Q ss_pred CCccCcccCCCCCCCEEEccCCCCc----cccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 633 LRRLPECLGQLSSPILLNLAETNIE----RIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 633 ~~~~p~~l~~l~~L~~L~l~~~~l~----~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
...--..+..+++|++|||++|.++ +-...+..+++|++|++.+|++- +||+
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~k 409 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPK 409 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecch
Confidence 5443446778999999999999977 22233567999999999999863 3443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=1.7e-16 Score=187.33 Aligned_cols=111 Identities=29% Similarity=0.501 Sum_probs=90.1
Q ss_pred CCCcEEEcccc-cccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCC-----------------
Q 048627 573 GNISWLLLRGS-AIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR----------------- 634 (689)
Q Consensus 573 ~~L~~L~l~~~-~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~----------------- 634 (689)
.+|+.|++++| .+.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 35677777766 455789999999999999999998888888775 67888888888875543
Q ss_pred ---ccCcccCCCCCCCEEEccCC-CCccccchhhccCCCcEEecCCCCCCCCCC
Q 048627 635 ---RLPECLGQLSSPILLNLAET-NIERIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 635 ---~~p~~l~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
.+|.+++.+++|+.|++.+| ++..+|..+..+++|+.+++++|..+..++
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 45666778899999999986 577999889999999999999999887554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=6.2e-20 Score=176.27 Aligned_cols=244 Identities=26% Similarity=0.353 Sum_probs=123.1
Q ss_pred hhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCccccc
Q 048627 420 KTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKH 498 (689)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~ 498 (689)
..+.++..|.+|.+++|.+.. +|++++.+. .+..+..+.+.+..+|..+ .+..|+.|+.+.|.+..+++.+..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~-----~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~ 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQ-LPAAIGELE-----ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGR 135 (565)
T ss_pred HhhhcccceeEEEeccchhhh-CCHHHHHHH-----HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHH
Confidence 344555556666666555443 244455554 4444555555555555555 455555555555555555555555
Q ss_pred CccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCc
Q 048627 499 YSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNIS 576 (689)
Q Consensus 499 l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~ 576 (689)
+..|..++..+++.. .. +..+.++.+|..+++.+|. +..+|+..-+|+.|++|+...|- ++.+|+.. ...|.
T Consensus 136 ~~~l~dl~~~~N~i~--sl--p~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS--SL--PEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLE 209 (565)
T ss_pred Hhhhhhhhccccccc--cC--chHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhH
Confidence 555555554443321 22 2344455555555555555 23333323345555555554432 44444332 12334
Q ss_pred EEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccC-CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCC
Q 048627 577 WLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLC-KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETN 655 (689)
Q Consensus 577 ~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 655 (689)
.|++..|++..+| +|..+..|..|.++.|++ ..+|...+ ++.+|.+|+++.| .++++|..+.-+.+|++||+++|.
T Consensus 210 ~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 210 LLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred HHHhhhcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc
Confidence 4455555555555 455555555555555554 44444433 4555555555552 344555555555555555555555
Q ss_pred CccccchhhccCCCcEEecCCCCC
Q 048627 656 IERIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 656 l~~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
++++|..++++ +|+.|.+.+|++
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccCCcccccc-eeeehhhcCCch
Confidence 55555555555 555555555554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=5e-16 Score=170.00 Aligned_cols=222 Identities=23% Similarity=0.227 Sum_probs=150.8
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhh
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRI 505 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l 505 (689)
++|+.|++++|.+... |. ++ .+|+.|.+.+|.+..+|.. +.+|+.|++++|+++.+|.. +++|+.|
T Consensus 242 ~~Lk~LdLs~N~LtsL-P~----lp----~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~L 307 (788)
T PRK15387 242 PELRTLEVSGNQLTSL-PV----LP----PGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQEL 307 (788)
T ss_pred CCCcEEEecCCccCcc-cC----cc----cccceeeccCCchhhhhhc--hhhcCEEECcCCcccccccc---cccccee
Confidence 5566666666655532 21 11 3555666666666666552 24566666777766666542 3456667
Q ss_pred ccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccc
Q 048627 506 IHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAI 585 (689)
Q Consensus 506 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l 585 (689)
+++++ .+ ..+|. -..+|+.|++++|. ++.+|. ...+|++|++++|. +..+|... .+|+.|++++|.+
T Consensus 308 dLS~N-~L-~~Lp~-----lp~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~-Ls~LP~lp-~~L~~L~Ls~N~L 374 (788)
T PRK15387 308 SVSDN-QL-ASLPA-----LPSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQ-LASLPTLP-SELYKLWAYNNRL 374 (788)
T ss_pred ECCCC-cc-ccCCC-----CcccccccccccCc-cccccc---cccccceEecCCCc-cCCCCCCC-cccceehhhcccc
Confidence 77664 33 33332 11346666777666 344554 12478888888876 45666543 6788888888888
Q ss_pred cccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhc
Q 048627 586 EELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQ 665 (689)
Q Consensus 586 ~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~ 665 (689)
..+|... .+|+.|++++|.+ ..+|.. .++|+.|++++|.. ..+|.. +.+|+.|++++|+++.+|..+.+
T Consensus 375 ~~LP~l~---~~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~ 443 (788)
T PRK15387 375 TSLPALP---SGLKELIVSGNRL-TSLPVL---PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQLTRLPESLIH 443 (788)
T ss_pred ccCcccc---cccceEEecCCcc-cCCCCc---ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCcccccChHHhh
Confidence 8877643 5789999999987 457754 46899999999775 457754 35688999999999999999999
Q ss_pred cCCCcEEecCCCCCCCCCCC
Q 048627 666 LFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 666 l~~L~~L~l~~~~~l~~~p~ 685 (689)
+++|+.|++++|++.+.+|.
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCCeEECCCCCCCchHHH
Confidence 99999999999999987654
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=6.7e-16 Score=170.24 Aligned_cols=226 Identities=21% Similarity=0.316 Sum_probs=174.4
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhh
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRI 505 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l 505 (689)
.+|+.|++++|.+.. +|..+. .+|+.|.+.+|.++.+|..+ ..+|+.|++++|.+..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~-------~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ-------GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc-------cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 578999999988774 343321 47889999999999998765 3479999999999998887764 478888
Q ss_pred ccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccc
Q 048627 506 IHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAI 585 (689)
Q Consensus 506 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l 585 (689)
+++++ ++ ..+|. .+. ++|++|++++|. +..+|..+. ++|+.|++++|. +..+|.....+|+.|++++|.+
T Consensus 268 ~Ls~N-~L-~~LP~--~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHN-KI-SCLPE--NLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred ECcCC-cc-Ccccc--ccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccccccceeccccCCcc
Confidence 88854 45 44543 232 479999999987 456776542 578999999877 4567776668899999999999
Q ss_pred cccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhh-
Q 048627 586 EELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSII- 664 (689)
Q Consensus 586 ~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~- 664 (689)
+.+|..+. ++|+.|++++|.+ ..+|..+ .++|++|+|++|... .+|..+. .+|+.|++++|++..+|..+.
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence 99987764 7899999999987 5677655 368999999998654 6776653 469999999999998876654
Q ss_pred ---ccCCCcEEecCCCCCC
Q 048627 665 ---QLFMLRYLLLNCSEGH 680 (689)
Q Consensus 665 ---~l~~L~~L~l~~~~~l 680 (689)
.++++..|++.+|++.
T Consensus 410 ~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcCCCccEEEeeCCCcc
Confidence 3578899999999975
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.2e-16 Score=171.10 Aligned_cols=226 Identities=21% Similarity=0.308 Sum_probs=140.7
Q ss_pred CcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhc
Q 048627 427 KLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRII 506 (689)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~ 506 (689)
+...|+++++.+.. +|.. ++ .+++.|++.+|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~---Ip----~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTT-IPAC---IP----EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCc-CCcc---cc----cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 34556666655443 2322 22 356777777777777776553 467777777777777766543 3577777
Q ss_pred cccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEccccccc
Q 048627 507 HAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIE 586 (689)
Q Consensus 507 l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~ 586 (689)
++++. + ..+|. .+. .+|+.|++++|. +..+|..+. ++|++|++++|. +..+|.....+|+.|++++|.+.
T Consensus 248 Ls~N~-L-~~LP~--~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINR-I-TELPE--RLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred CcCCc-c-CcCCh--hHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccc
Confidence 77654 3 23332 222 467777777665 445666543 467777777764 44566544456777777777777
Q ss_pred ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhcc
Q 048627 587 ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQL 666 (689)
Q Consensus 587 ~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l 666 (689)
.+|..+. ++|+.|++++|.+ ..+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|+++.+|..+.
T Consensus 318 ~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 318 ALPETLP--PGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred cCCcccc--ccceeccccCCcc-ccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCCCCCHhHH--
Confidence 7665443 5777777777765 44665543 5777777777654 3466544 2567777777777777776654
Q ss_pred CCCcEEecCCCCCCCCCC
Q 048627 667 FMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 667 ~~L~~L~l~~~~~l~~~p 684 (689)
..|+.|++++|++. .+|
T Consensus 388 ~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 388 AALQIMQASRNNLV-RLP 404 (754)
T ss_pred HHHHHHhhccCCcc-cCc
Confidence 25777777777765 444
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=7.1e-14 Score=164.35 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=184.8
Q ss_pred cccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 57 QLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 57 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
.+|..+..+|-|.+-++.+.+ ....+++.|+|++|.||||++.++..+. ..++|+. +.... .+....
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHH
Confidence 367777889999987776653 2357899999999999999999988643 3577886 32221 333334
Q ss_pred HHHHHHHhcCCCC-------------C-Cc---chHHHHHhhc--CCcEEEEEcCCCChH--HHHHHhcC-CCCCCCCce
Q 048627 137 RQKLLLNLLKDEN-------------V-IP---DIDLNFRRLS--RIKILIVFDDVTCFT--QLESLIGS-LDWLTPVSR 194 (689)
Q Consensus 137 ~~~~l~~~~~~~~-------------~-~~---~~~~l~~~l~--~~~~LlVlDdv~~~~--~~~~l~~~-l~~~~~g~~ 194 (689)
...++..+..... . .. ....+...+. +.+++|||||+.... ....++.. +....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 4444444421100 0 01 1122222232 678999999996532 12222222 222356678
Q ss_pred EEeeccchhhhh--hc-CcceEEEcC----CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhh
Q 048627 195 IIITTRNKQVLR--NW-EVRKIYEVE----ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFL 267 (689)
Q Consensus 195 iliTtR~~~~~~--~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 267 (689)
+|||||...... .+ .......+. +|+.+|+.+||....... ...+.+.++.+.|+|+|+++..++..+
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 889999842221 11 112244555 899999999998765321 124457899999999999999988776
Q ss_pred cCCCHHHHHHHHHHHHhcCCchHHHHHHH-HhcCCCHHHHHHhhhcccccCCcCHHHHHHHHHhcCCCchhchhHHhhcC
Q 048627 268 YKREKEVWESAINKLQRILHPSIREVLKI-SYDGLDDKEKNIFLDVACFFRGEGVNLVMKFFDASGFYPEIGINVLVDKS 346 (689)
Q Consensus 268 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-s~~~L~~~~~~~~~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~ 346 (689)
...... .......+.......+...+.- .++.||++.+.++..+|+++ .++.+.+..+.+.. .....++.|.+.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~ 305 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQG 305 (903)
T ss_pred hhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCC
Confidence 543210 0111111211123446665444 48999999999999999986 67766666665422 3467799999999
Q ss_pred ceEE-cc--CCeEEecHHHHHHHHHHHhh
Q 048627 347 LIAI-DS--YNKITMHDLLQELGREIVRQ 372 (689)
Q Consensus 347 li~~-~~--~~~~~~H~lv~~~a~~~~~~ 372 (689)
++.. .+ ..+|++|++++++.+.....
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 8653 22 34899999999999887643
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.3e-17 Score=136.91 Aligned_cols=170 Identities=22% Similarity=0.312 Sum_probs=111.7
Q ss_pred CCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCC
Q 048627 469 SLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIF 548 (689)
Q Consensus 469 ~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 548 (689)
.+|..|.+.+...|.+++|+++.+|+.+..+.+|+.|++++++ + ..+| ..++.+++|++|++.-|. +..+|.+++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-i-e~lp--~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-I-EELP--TSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-h-hhcC--hhhhhchhhhheecchhh-hhcCccccC
Confidence 5666677777888888888888888888888888888887654 3 3443 467788888888887666 677888888
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEee
Q 048627 549 NLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLH 628 (689)
Q Consensus 549 ~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 628 (689)
.++.|+.|+++.|...+. .+|..+..+..|+-|++++|.+ ..+|..++++++|+.|.++
T Consensus 100 s~p~levldltynnl~e~--------------------~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNEN--------------------SLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLR 158 (264)
T ss_pred CCchhhhhhccccccccc--------------------cCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeec
Confidence 888888888887653321 2344444445555555555554 5555555556666666555
Q ss_pred cCCCCCccCcccCCCCCCCEEEccCCCCccccchhhc
Q 048627 629 GCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQ 665 (689)
Q Consensus 629 ~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~ 665 (689)
.|.. -++|..++.+..|++|.+.+|.++-+|..+++
T Consensus 159 dndl-l~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 159 DNDL-LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cCch-hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 5332 24555556666666666666666655555444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=8.4e-14 Score=152.72 Aligned_cols=218 Identities=22% Similarity=0.197 Sum_probs=163.5
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhh
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRI 505 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l 505 (689)
.+|+.|.+.+|.+.. +|. ++ .+|++|++.+|.++.+|.. ..+|+.|++.+|.++.+|... .+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~----lp----~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA----LP----PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALP---SGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCC-CCC----CC----CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhch---hhcCEE
Confidence 378899999888765 332 22 5788999999999988864 468899999999988877643 456677
Q ss_pred ccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccc
Q 048627 506 IHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAI 585 (689)
Q Consensus 506 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l 585 (689)
++.++. + ..+|. ..++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|... .+|+.|++++|.+
T Consensus 288 ~Ls~N~-L-t~LP~-----~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp-~~Lq~LdLS~N~L 354 (788)
T PRK15387 288 WIFGNQ-L-TSLPV-----LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTLP-SGLQELSVSDNQL 354 (788)
T ss_pred ECcCCc-c-ccccc-----cccccceeECCCCc-cccCCCC---cccccccccccCc-cccccccc-cccceEecCCCcc
Confidence 777653 4 44442 24679999999987 4456652 3467888898876 45677543 6899999999999
Q ss_pred cccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhc
Q 048627 586 EELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQ 665 (689)
Q Consensus 586 ~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~ 665 (689)
+.+|... .+|+.|++++|.+ ..+|.. +.+|+.|++++|... .+|.. .++|+.|++++|.++++|...
T Consensus 355 s~LP~lp---~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~-- 421 (788)
T PRK15387 355 ASLPTLP---SELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLP-- 421 (788)
T ss_pred CCCCCCC---cccceehhhcccc-ccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcch--
Confidence 9988643 5788899999887 467764 357999999997654 56653 467999999999999988643
Q ss_pred cCCCcEEecCCCCCCCCCCC
Q 048627 666 LFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 666 l~~L~~L~l~~~~~l~~~p~ 685 (689)
.+|+.|++++|++. .+|.
T Consensus 422 -~~L~~L~Ls~NqLt-~LP~ 439 (788)
T PRK15387 422 -SGLLSLSVYRNQLT-RLPE 439 (788)
T ss_pred -hhhhhhhhccCccc-ccCh
Confidence 46888999999976 5764
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=3.4e-16 Score=166.06 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=48.0
Q ss_pred hhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCccccc
Q 048627 420 KTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKH 498 (689)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~ 498 (689)
..+..+.+|+.|.++.|.+.. .|....++ .+|+++.+.++.+..+|..+ .+.+|+.|+++.|.+...|..+..
T Consensus 62 ~~it~l~~L~~ln~s~n~i~~-vp~s~~~~-----~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~ 135 (1081)
T KOG0618|consen 62 IQITLLSHLRQLNLSRNYIRS-VPSSCSNM-----RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEV 135 (1081)
T ss_pred chhhhHHHHhhcccchhhHhh-Cchhhhhh-----hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHh
Confidence 344455556666665554322 23333333 36666777777777777777 677777777777777666555554
Q ss_pred Cccchhhccc
Q 048627 499 YSKLNRIIHA 508 (689)
Q Consensus 499 l~~L~~l~l~ 508 (689)
+..+..+..+
T Consensus 136 lt~~~~~~~s 145 (1081)
T KOG0618|consen 136 LTAEEELAAS 145 (1081)
T ss_pred hhHHHHHhhh
Confidence 4444444444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-15 Score=128.85 Aligned_cols=159 Identities=26% Similarity=0.337 Sum_probs=114.3
Q ss_pred CCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccccCcccccCCCCCEEec
Q 048627 526 LNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEELPSSIERQLRLSWLDL 603 (689)
Q Consensus 526 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l 603 (689)
+.+.+.|.|+.|. +..+|+.+..+.+|+.|++++|. ++.+|... ...|+.|.++-|.+..+|.+++.++-|+.||+
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 3334444444444 33444444444555555444433 33333221 13344444445667778999999999999999
Q ss_pred CCCCCCC-CCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCC
Q 048627 604 TDCKMFK-SLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 604 ~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
++|.+.. .+|..+..++.|+.|+++.| ..+.+|..++.+++|+.|.+..|.+-++|..++.+..|+.|.+.+|.+..-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 9988754 68888888999999999884 457889999999999999999999999999999999999999999998876
Q ss_pred CCCCC
Q 048627 683 IPKRP 687 (689)
Q Consensus 683 ~p~~~ 687 (689)
.|.+.
T Consensus 189 ppel~ 193 (264)
T KOG0617|consen 189 PPELA 193 (264)
T ss_pred Chhhh
Confidence 66553
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.42 E-value=9e-12 Score=132.65 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=188.1
Q ss_pred cccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 57 QLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 57 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
.+|..+...|-|.+-.+.+.+ ..+.|.+.|..|+|.||||++.+++. ....-..+.|++.-.. -.+....
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~----dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES----DNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc----cCCHHHH
Confidence 356667788888876666654 23678999999999999999999988 4445577888883222 2455566
Q ss_pred HHHHHHHhcCCCCCC-----------------cchHHHHHhhc--CCcEEEEEcCCCChH------HHHHHhcCCCCCCC
Q 048627 137 RQKLLLNLLKDENVI-----------------PDIDLNFRRLS--RIKILIVFDDVTCFT------QLESLIGSLDWLTP 191 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~-----------------~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~ 191 (689)
...++..+....... ..+..+...+. .+++.+||||..-.. .++.++.. ..+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCC
Confidence 666666655321111 12222233222 568999999985432 24444444 457
Q ss_pred CceEEeeccchhhhhhc--C-cceEEEcC----CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 192 VSRIIITTRNKQVLRNW--E-VRKIYEVE----ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 192 g~~iliTtR~~~~~~~~--~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
+-..++|||........ . .....+++ .|+.+|+.++|...... +-.+..++.+.+..+|.+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHH
Confidence 88899999987432211 1 11233333 48999999999887521 1224458899999999999999999
Q ss_pred hhhcCC-CHHHHHHHHHHHHhcCCchHH-HHHHHHhcCCCHHHHHHhhhcccccCCcCHHHHHHHHHhcCCCchhchhHH
Q 048627 265 CFLYKR-EKEVWESAINKLQRILHPSIR-EVLKISYDGLDDKEKNIFLDVACFFRGEGVNLVMKFFDASGFYPEIGINVL 342 (689)
Q Consensus 265 ~~l~~~-~~~~~~~~l~~l~~~~~~~~~-~~l~~s~~~L~~~~~~~~~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L 342 (689)
=+++++ +.+.--..+... .+-+. ....--++.||++.|.++..+|++.. +.-+-...+.+.+ .....+++|
T Consensus 235 La~~~~~~~~q~~~~LsG~----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L 307 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGA----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEEL 307 (894)
T ss_pred HHccCCCcHHHHhhhccch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHH
Confidence 888843 322211111111 11111 22344589999999999999998853 3333344443221 234458999
Q ss_pred hhcCceEE---ccCCeEEecHHHHHHHHHHHhhh
Q 048627 343 VDKSLIAI---DSYNKITMHDLLQELGREIVRQE 373 (689)
Q Consensus 343 ~~~~li~~---~~~~~~~~H~lv~~~a~~~~~~~ 373 (689)
.+++|+-. +++++|+.|.++.+|.+.....+
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 99998663 33789999999999999887764
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=2.6e-11 Score=127.96 Aligned_cols=281 Identities=15% Similarity=0.089 Sum_probs=164.4
Q ss_pred ccCCCCCcccchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhcCCCCh
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~ 133 (689)
+...|+.++||++++++|...+... ......+.|+|++|+|||++++.+++++.... -..+++.+ ... .+.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~----~~~-~~~ 99 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC----QID-RTR 99 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC----CcC-CCH
Confidence 3446778999999999999988421 23456688999999999999999999876554 23344431 111 345
Q ss_pred HHHHHHHHHHhcCCCCCC------cchHHHHHhhc--CCcEEEEEcCCCChH------HHHHHhcCCCCCCCCce--EEe
Q 048627 134 AWLRQKLLLNLLKDENVI------PDIDLNFRRLS--RIKILIVFDDVTCFT------QLESLIGSLDWLTPVSR--III 197 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~------~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~g~~--ili 197 (689)
..+...++.++....... +....+.+.+. +++.+||||+++... .+..+...... .++++ +|.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEE
Confidence 567777777776522111 23344455554 456899999997643 24444332221 12333 565
Q ss_pred eccchhhhhhc-------CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHH----hCCCchhHHHhhhh
Q 048627 198 TTRNKQVLRNW-------EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKY----AQGVPLALKVLGCF 266 (689)
Q Consensus 198 TtR~~~~~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~----~~g~Plal~~~~~~ 266 (689)
++.+..+.... -....+.+++++.++..+++..++.....+..-..+..+.+++. .|..+.|+..+-.+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55544332211 11256899999999999999877622111111112233444443 34566676665432
Q ss_pred hc-----CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc----CCcCHHHHH----HHHHh
Q 048627 267 LY-----KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF----RGEGVNLVM----KFFDA 330 (689)
Q Consensus 267 l~-----~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~----~~~~~~~l~----~l~~~ 330 (689)
.. +. +.+.+..+.+... .......+..||.++|.++..++... .......+. .+...
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 21 11 3455655555541 23345568899999998887776543 223444332 22222
Q ss_pred cCCC------chhchhHHhhcCceEEc
Q 048627 331 SGFY------PEIGINVLVDKSLIAID 351 (689)
Q Consensus 331 ~~~~------~~~~l~~L~~~~li~~~ 351 (689)
.+.. ...+++.|...|+|...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 2332 23458899999999864
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=8.6e-15 Score=155.59 Aligned_cols=238 Identities=23% Similarity=0.310 Sum_probs=172.6
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccchh
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNR 504 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 504 (689)
.+|+.|....|.+.... ... .-.++.+++++.+.+..+|..+ .+.+|+.+++.+|++..+|..+....+|+.
T Consensus 219 ~~l~~L~a~~n~l~~~~---~~p----~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLD---VHP----VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCcceeec---ccc----ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 34566666666554221 111 1257888999999999999777 788999999999999999999888999999
Q ss_pred hccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCC--------------------------CCCCCCEEec
Q 048627 505 IIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIF--------------------------NLEFLTKLDL 558 (689)
Q Consensus 505 l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--------------------------~l~~L~~L~l 558 (689)
+....+. + ..+| .....++.|++|+|..|. +..+|+.+- .++.|+.|++
T Consensus 292 l~~~~ne-l-~yip--~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 292 LSAAYNE-L-EYIP--PFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred HHhhhhh-h-hhCC--Ccccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 9888764 3 3333 355668999999999887 555554221 1223455555
Q ss_pred cCCCCCCCC-CCC-CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCc
Q 048627 559 SGCSKLKRL-PEI-SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR 635 (689)
Q Consensus 559 ~~~~~l~~~-p~~-~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 635 (689)
.+|.....+ |.. ...+|+.|+|++|.+..+|.. +.++..|+.|++++|.+ ..+|..+-+++.|++|...+| .+..
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 555544332 221 236788999999988888874 67888889999999886 888888888889999887764 4567
Q ss_pred cCcccCCCCCCCEEEccCCCCc--cccchhhccCCCcEEecCCCCC
Q 048627 636 LPECLGQLSSPILLNLAETNIE--RIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 636 ~p~~l~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
+| .+..++.|+.+|++.|+++ .+|..... |+|++|++++|..
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 78 6788899999999999987 44443322 7899999999984
No 24
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.37 E-value=7.5e-12 Score=141.23 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=184.3
Q ss_pred CcccchhhHHHHHHhhcCC-CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee-ccchhcC--CCChHHHHH-
Q 048627 64 QLVGVESTVEEIESLLGVE-SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN-VRVESQR--PGGLAWLRQ- 138 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~-~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~--~~~~~~l~~- 138 (689)
.++||+.+++.|...+... .....++.+.|.+|||||+++++|...+.+.+.. ++.. ....... ...+.+..+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~--~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGY--FIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcccee--eeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999988632 3446799999999999999999999987655211 1110 0000000 011111222
Q ss_pred ------------------HHHHHhcCCCCCC------------------c-------------chHHHHHhhc-CCcEEE
Q 048627 139 ------------------KLLLNLLKDENVI------------------P-------------DIDLNFRRLS-RIKILI 168 (689)
Q Consensus 139 ------------------~~l~~~~~~~~~~------------------~-------------~~~~l~~~l~-~~~~Ll 168 (689)
+++..++..+... + ....+..... .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222222211000 0 0111122223 569999
Q ss_pred EEcCC-CChHH----HHHHhcCCC--CC-CCCceEEeeccch--hhhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCC
Q 048627 169 VFDDV-TCFTQ----LESLIGSLD--WL-TPVSRIIITTRNK--QVLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHP 238 (689)
Q Consensus 169 VlDdv-~~~~~----~~~l~~~l~--~~-~~g~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 238 (689)
|+||+ |-+.. ++.+..... .. ....-.+.|.+.. .+.........+.|.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999 54443 333332221 00 0011223333333 1222234447899999999999999988863322
Q ss_pred ChhHHHHHHHHHHHhCCCchhHHHhhhhhcCC-------CHHHHHHHHHHHHhcC-CchHHHHHHHHhcCCCHHHHHHhh
Q 048627 239 DVGYEKLSSNVMKYAQGVPLALKVLGCFLYKR-------EKEVWESAINKLQRIL-HPSIREVLKISYDGLDDKEKNIFL 310 (689)
Q Consensus 239 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~~~~~l~~s~~~L~~~~~~~~~ 310 (689)
....+....|.++..|+|+.+..+-.++... +...|+.-...+.... .+++.+.+....+.||...|.++.
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2235678999999999999999999988753 3455666555544333 233566788999999999999999
Q ss_pred hcccccCCcCHHHHHHHHHhcCCCchhchhHHhhcCceEEcc--------CC---eEEecHHHHHHHHHHHhh
Q 048627 311 DVACFFRGEGVNLVMKFFDASGFYPEIGINVLVDKSLIAIDS--------YN---KITMHDLLQELGREIVRQ 372 (689)
Q Consensus 311 ~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~li~~~~--------~~---~~~~H~lv~~~a~~~~~~ 372 (689)
..||+.+.|+.+.+..++..........+......+++.+.+ .. +-..|+.+++.+.....+
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 999999999999998888754433333444444455555421 11 225788888887665433
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.35 E-value=1.6e-11 Score=124.52 Aligned_cols=252 Identities=18% Similarity=0.191 Sum_probs=150.1
Q ss_pred CCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHH
Q 048627 63 NQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
..|||++..+++|..++.. ....+..+.++|++|+|||+||+.+++.+...+. +...... .....+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHH-H
Confidence 4699999999999988852 1233567889999999999999999998754321 1111001 1111111 1
Q ss_pred HHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCC-------------------CCCCCCceEEee
Q 048627 140 LLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSL-------------------DWLTPVSRIIIT 198 (689)
Q Consensus 140 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l-------------------~~~~~g~~iliT 198 (689)
.+..+ +...++++||++... ..+.+...+ ....+.+-|..|
T Consensus 75 ~l~~~------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTNL------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHhc------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11111 122355666654321 111111110 011234455667
Q ss_pred ccchhhhhhc--CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhc------CC
Q 048627 199 TRNKQVLRNW--EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLY------KR 270 (689)
Q Consensus 199 tR~~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~------~~ 270 (689)
|+...+.... .....+.+++++.++..+++...+..... .-..+....|++.|+|.|..+..++..+. +.
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~ 214 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQ 214 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCC
Confidence 7764332221 12357899999999999999888743222 22355678899999999987655554321 00
Q ss_pred ---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhh-hcccccCC-cCHHHHHHHHHhcCCCchhchh-HHhh
Q 048627 271 ---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFL-DVACFFRG-EGVNLVMKFFDASGFYPEIGIN-VLVD 344 (689)
Q Consensus 271 ---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~ 344 (689)
+.+... .....+...+..+++.++..+. .++.+..+ ++.+.+...++.+....+..++ .|++
T Consensus 215 ~~it~~~v~------------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 215 KIINRDIAL------------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQ 282 (305)
T ss_pred CCcCHHHHH------------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHH
Confidence 111111 1122245567889998887776 44555433 6778888888888777888788 6999
Q ss_pred cCceEEccCCe
Q 048627 345 KSLIAIDSYNK 355 (689)
Q Consensus 345 ~~li~~~~~~~ 355 (689)
++|+.....++
T Consensus 283 ~~li~~~~~g~ 293 (305)
T TIGR00635 283 IGFLQRTPRGR 293 (305)
T ss_pred cCCcccCCchh
Confidence 99997654444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=5.8e-14 Score=141.61 Aligned_cols=186 Identities=27% Similarity=0.390 Sum_probs=121.2
Q ss_pred cCCCCCCCCCCC---CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCC
Q 048627 463 HGYPLKSLPSNL---SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKS 539 (689)
Q Consensus 463 ~~~~~~~lp~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 539 (689)
++-.++.+|..- .+..-...+++.|++..+|...+.+..|..+.+..+. + ..+ +..++++..|++|||+.|.
T Consensus 58 s~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~-r~i--p~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 58 SGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-I-RTI--PEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred ccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-c-eec--chhhhhhhHHHHhhhccch-
Confidence 333344444322 4445567789999999999999999999888877643 1 333 3467888888888888887
Q ss_pred CcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCC
Q 048627 540 LKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKL 619 (689)
Q Consensus 540 ~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 619 (689)
+..+|..++.++ |+.|.+++ |+++.+|..|+.+.+|..|+.+.|.+ ..+|+.++.+
T Consensus 133 lS~lp~~lC~lp-Lkvli~sN----------------------Nkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l 188 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSN----------------------NKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYL 188 (722)
T ss_pred hhcCChhhhcCc-ceeEEEec----------------------CccccCCcccccchhHHHhhhhhhhh-hhchHHhhhH
Confidence 677887776666 66666665 44555556666666666666666664 5566666666
Q ss_pred CCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCC
Q 048627 620 KSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 620 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
.+|+.|+++.|+ +..+|+.++.|+ |.+||+++|++..+|.++.+|..|++|.|.+|++
T Consensus 189 ~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 189 TSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 666666666533 334555555333 6666666666666666666666666666666665
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.33 E-value=1.4e-11 Score=125.73 Aligned_cols=263 Identities=15% Similarity=0.160 Sum_probs=155.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|.....|+|++..++.+..++.. .....+.+.|+|++|+|||++|+.+++.+...+. +.. .... .....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~----~~~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL----EKPGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc----cChHH
Confidence 44566899999999999888752 2334567889999999999999999998764321 111 1101 11111
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCC-------------------CCCCCce
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLD-------------------WLTPVSR 194 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~g~~ 194 (689)
...++.. + ...-+|+|||++... ..+.+...+. ...+.+-
T Consensus 93 -l~~~l~~-----------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 93 -LAAILTN-----------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred -HHHHHHh-----------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 1111111 1 123466677775321 1111111000 0122344
Q ss_pred EEeeccchhhhhhc--CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCH
Q 048627 195 IIITTRNKQVLRNW--EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREK 272 (689)
Q Consensus 195 iliTtR~~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 272 (689)
|..|++...+...+ .....+.+++++.++..+++...+...+. .-..+.+..|++.|+|.|..+..+...+.
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~---- 227 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR---- 227 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH----
Confidence 55666654332221 12357899999999999999988744322 22355789999999999976555544321
Q ss_pred HHHHHHHH--HHHhcCCchHHHHHHHHhcCCCHHHHHHhh-hcccccCC-cCHHHHHHHHHhcCCCchhchh-HHhhcCc
Q 048627 273 EVWESAIN--KLQRILHPSIREVLKISYDGLDDKEKNIFL-DVACFFRG-EGVNLVMKFFDASGFYPEIGIN-VLVDKSL 347 (689)
Q Consensus 273 ~~~~~~l~--~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~~~l 347 (689)
.|..... .+...........+...+..|++..+..+. .+..|..+ +..+.++..++.+....+..++ .|++.+|
T Consensus 228 -~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 228 -DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred -HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCC
Confidence 1111000 000000112233455667889888888885 55566544 7788899998887777777788 9999999
Q ss_pred eEEccCCe
Q 048627 348 IAIDSYNK 355 (689)
Q Consensus 348 i~~~~~~~ 355 (689)
++..+.++
T Consensus 307 i~~~~~gr 314 (328)
T PRK00080 307 IQRTPRGR 314 (328)
T ss_pred cccCCchH
Confidence 97654443
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=9.9e-12 Score=121.25 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=100.7
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH--------
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL-------- 136 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l-------- 136 (689)
|+||++++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+........++|+......... .....
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 79999999999999953 3356889999999999999999999885443345555432221110 01111
Q ss_pred --HHHHHHHhcCCCC----------CCcchHHHHHhhc--CCcEEEEEcCCCChH-----------HHHHHhcCCCCCCC
Q 048627 137 --RQKLLLNLLKDEN----------VIPDIDLNFRRLS--RIKILIVFDDVTCFT-----------QLESLIGSLDWLTP 191 (689)
Q Consensus 137 --~~~~l~~~~~~~~----------~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~ 191 (689)
.+.+...+..... .......+.+.+. +++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 1111111111110 1133344444443 345999999996544 12222222222 23
Q ss_pred CceEEeeccchhhhhh--------cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 192 VSRIIITTRNKQVLRN--------WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 192 g~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
...+++++........ .+....+.+++|+.+++.+++...+... ..-....+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3334444443333322 2334569999999999999998865322 11012355679999999999988764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=2.8e-13 Score=139.08 Aligned_cols=255 Identities=17% Similarity=0.130 Sum_probs=147.7
Q ss_pred hhhhCCCCcceEEeccccCCCC----CcccccccCcccccceeEEEecCCCCCCCC-------CCC-CcCCceeeecCCC
Q 048627 420 KTFTKMCKLRFLKFYSSSFNGE----NKCKVSYLQDPAFAEVKYFHWHGYPLKSLP-------SNL-SAEKLVFLEVPDN 487 (689)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp-------~~~-~~~~L~~L~l~~~ 487 (689)
..|..+.+|+.|.+.++.+... ++..+...+ .++.+.+.++.+...| ..+ .+.+|+.|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-----~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-----SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-----CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 5566777899999999877442 222233332 5777777777655322 223 4678999999888
Q ss_pred Cccc-cCcccccCcc---chhhccccCccccccCC-CCCCCCCC-CcccEEeccCCCCCc----ccCccCCCCCCCCEEe
Q 048627 488 NIEQ-LGDCVKHYSK---LNRIIHAACNKLIAKTP-NPTLMPRL-NKLVFLNLRGSKSLK----SLPSEIFNLEFLTKLD 557 (689)
Q Consensus 488 ~i~~-l~~~~~~l~~---L~~l~l~~~~~l~~~~~-~~~~~~~l-~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~ 557 (689)
.+.. .+..+..+.+ |++|+++++..-....+ ....+..+ ++|+.|++++|.+.+ .++..+..+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 8763 2333434443 78888777541100000 01123344 778888888887552 2334455667788888
Q ss_pred ccCCCCCCC----CCCC--CcCCCcEEEccccccc-----ccCcccccCCCCCEEecCCCCCCCCCCcccC-----CCCC
Q 048627 558 LSGCSKLKR----LPEI--SSGNISWLLLRGSAIE-----ELPSSIERQLRLSWLDLTDCKMFKSLPSSLC-----KLKS 621 (689)
Q Consensus 558 l~~~~~l~~----~p~~--~~~~L~~L~l~~~~l~-----~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~ 621 (689)
+++|..... ++.. ...+|+.|++++|.+. .++..+..+++|++|++++|.+...-+..+. ..+.
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 887764421 1110 1146777777777664 3344556677777777777766431111111 2367
Q ss_pred ccEEEeecCCCC----CccCcccCCCCCCCEEEccCCCCcc-----ccchhhcc-CCCcEEecCCCCC
Q 048627 622 LGVLDLHGCSNL----RRLPECLGQLSSPILLNLAETNIER-----IPKSIIQL-FMLRYLLLNCSEG 679 (689)
Q Consensus 622 L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~~~~ 679 (689)
|++|++++|... ..++..+..+++|+.+++++|.+.. +...+... +.|+.|++.+|++
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 777777777654 2233444555777777777777762 22233333 5677777777653
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.7e-13 Score=140.63 Aligned_cols=223 Identities=21% Similarity=0.163 Sum_probs=148.9
Q ss_pred ceeEEEecCCCCC-----CCCCCC-CcCCceeeecCCCCccc-------cCcccccCccchhhccccCccccccCCCCCC
Q 048627 456 EVKYFHWHGYPLK-----SLPSNL-SAEKLVFLEVPDNNIEQ-------LGDCVKHYSKLNRIIHAACNKLIAKTPNPTL 522 (689)
Q Consensus 456 ~L~~l~~~~~~~~-----~lp~~~-~~~~L~~L~l~~~~i~~-------l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~ 522 (689)
.++.+.+.++.+. .++..+ ..+.|++|+++++.+.. ++..+..+++|+.|+++++..- ... ...
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~--~~~ 100 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDG--CGV 100 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhH--HHH
Confidence 5788888888763 344444 55678899988887652 2234566778889888876522 111 112
Q ss_pred CCCC---CcccEEeccCCCCCc----ccCccCCCC-CCCCEEeccCCCCCCC----CCCC--CcCCCcEEEccccccc--
Q 048627 523 MPRL---NKLVFLNLRGSKSLK----SLPSEIFNL-EFLTKLDLSGCSKLKR----LPEI--SSGNISWLLLRGSAIE-- 586 (689)
Q Consensus 523 ~~~l---~~L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~l~~----~p~~--~~~~L~~L~l~~~~l~-- 586 (689)
+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|..... ++.. ...+|+.|++++|.++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 2223 459999999887552 233445566 8899999999875422 1111 1247899999988876
Q ss_pred ---ccCcccccCCCCCEEecCCCCCCC----CCCcccCCCCCccEEEeecCCCCCccCcccC-----CCCCCCEEEccCC
Q 048627 587 ---ELPSSIERQLRLSWLDLTDCKMFK----SLPSSLCKLKSLGVLDLHGCSNLRRLPECLG-----QLSSPILLNLAET 654 (689)
Q Consensus 587 ---~l~~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-----~l~~L~~L~l~~~ 654 (689)
.++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|...+..+..+. ..++|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 344455666799999999988742 3445567788999999999876542222211 2478999999999
Q ss_pred CCc-----cccchhhccCCCcEEecCCCCCCC
Q 048627 655 NIE-----RIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 655 ~l~-----~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
.++ .++..+..+++|+.+++++|.+..
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 885 445556667889999999988864
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=1.5e-09 Score=113.37 Aligned_cols=282 Identities=16% Similarity=0.132 Sum_probs=156.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc------ceEEeeeccchhcC
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE------GTCFLENVRVESQR 129 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~ 129 (689)
+...|+.++||++++++|...+.. .......+.|+|++|+|||++++.+++.+..... ..+|+.+ . ..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~-~---~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC-Q---IL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC-C---CC
Confidence 444567899999999999999862 1234567899999999999999999988653322 2344442 1 11
Q ss_pred CCChHHHHHHHHHHhcC--CCCCC------cchHHHHHhhc--CCcEEEEEcCCCChH-----HHHHHhcCC-CCCC--C
Q 048627 130 PGGLAWLRQKLLLNLLK--DENVI------PDIDLNFRRLS--RIKILIVFDDVTCFT-----QLESLIGSL-DWLT--P 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~--~~~~~------~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~l-~~~~--~ 191 (689)
.+...+...++.++.. ...+. +....+.+.+. +++++||||+++... .+..+.... .... .
T Consensus 86 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 86 -DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred -CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 3445677777777641 11111 12334444443 567899999997652 122332211 0111 2
Q ss_pred CceEEeeccchhhhhhcC-------cceEEEcCCCCHHHHHHHHHHhcc---CCCCCChhHHHHHHHHHHHhCCCchhH-
Q 048627 192 VSRIIITTRNKQVLRNWE-------VRKIYEVEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYAQGVPLAL- 260 (689)
Q Consensus 192 g~~iliTtR~~~~~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plal- 260 (689)
...+|.++........+. ....+.+++.+.++..+++..++. ....-++...+.+..++....|.|..+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 234455554332211111 124689999999999999988763 111122333345566677777888543
Q ss_pred HHhhhhh----c-C---CCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccC----CcCHHHHHH--
Q 048627 261 KVLGCFL----Y-K---REKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFR----GEGVNLVMK-- 326 (689)
Q Consensus 261 ~~~~~~l----~-~---~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~----~~~~~~l~~-- 326 (689)
..+-.+. . + -+.+..+.+.+.+. .....-.+..||.+++.++..++.... .+....+..
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 3222111 1 1 13445555554431 233445678999988877776653321 123333222
Q ss_pred --HHHhcCCC------chhchhHHhhcCceEEc
Q 048627 327 --FFDASGFY------PEIGINVLVDKSLIAID 351 (689)
Q Consensus 327 --l~~~~~~~------~~~~l~~L~~~~li~~~ 351 (689)
+....+.. ....+..|...|+|...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22212211 12346777777887764
No 32
>PF05729 NACHT: NACHT domain
Probab=99.19 E-value=1.7e-10 Score=105.83 Aligned_cols=142 Identities=21% Similarity=0.249 Sum_probs=86.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHH-
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFR- 159 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~- 159 (689)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..... .....+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~~~~~~--~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDS-NNSRSLADLLFDQLPESIAP--IEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhc-cccchHHHHHHHhhccchhh--hHHHHHHH
Confidence 5789999999999999999999865543 2333433 3333332 11123333333332221111 1111222
Q ss_pred hhcCCcEEEEEcCCCChHH---------HHHHhcC-CC-CCCCCceEEeeccchhh---hhhcCcceEEEcCCCCHHHHH
Q 048627 160 RLSRIKILIVFDDVTCFTQ---------LESLIGS-LD-WLTPVSRIIITTRNKQV---LRNWEVRKIYEVEALEYHHAL 225 (689)
Q Consensus 160 ~l~~~~~LlVlDdv~~~~~---------~~~l~~~-l~-~~~~g~~iliTtR~~~~---~~~~~~~~~~~l~~L~~~~~~ 225 (689)
....++++||||++++... +..++.. +. ...++++++||+|.... .........+++.+|++++..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHH
Confidence 2247899999999975432 2222222 22 13578999999998755 333445568999999999999
Q ss_pred HHHHHhc
Q 048627 226 ELFSRHA 232 (689)
Q Consensus 226 ~lf~~~~ 232 (689)
+++.+..
T Consensus 157 ~~~~~~f 163 (166)
T PF05729_consen 157 QYLRKYF 163 (166)
T ss_pred HHHHHHh
Confidence 9998765
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=3e-12 Score=123.80 Aligned_cols=222 Identities=20% Similarity=0.185 Sum_probs=125.7
Q ss_pred cceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCcccc-CcccccCccchhhccccCccccccCCCCCCCCCCCcccE
Q 048627 455 AEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQL-GDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVF 531 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~ 531 (689)
...-.+.+..|.++.||+.. .+.+||.|++++|+|+.+ |+.++.+..|..|.+-+.+++ ..+|. ..|.+|..|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k-~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPK-GAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhh-hHhhhHHHHHH
Confidence 45667778888888888755 678888888888888866 666888888888877776666 55553 35666666666
Q ss_pred EeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-------------------CcCCCcEE--------------
Q 048627 532 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-------------------SSGNISWL-------------- 578 (689)
Q Consensus 532 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-------------------~~~~L~~L-------------- 578 (689)
|.+..|...-.....+..+++|..|.+.+|. ...++.. ..++|+++
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 6665554332222333344444444443322 1111110 00111111
Q ss_pred ------Ecc--------------------------cccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEE
Q 048627 579 ------LLR--------------------------GSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVL 625 (689)
Q Consensus 579 ------~l~--------------------------~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 625 (689)
.+. .+.....|. .+..|++|+.|++++|.+...-+.+|..+..++.|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 000 001111121 25567777777777777665556666666677777
Q ss_pred EeecCCCCCccCcccCCCCCCCEEEccCCCCcccc-chhhccCCCcEEecCCCCC
Q 048627 626 DLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP-KSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 626 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 679 (689)
.|..|..-..--..+.++..|+.|+|.+|+++.+. ..+..+.+|..|++-.|++
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77665433222234556666777777777766333 3445566666666665554
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=2.5e-09 Score=106.50 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=106.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC---cchHHHHHh-
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI---PDIDLNFRR- 160 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~l~~~- 160 (689)
+.+.++|+|++|+||||+++.+++.+...-...+++. ... .+...+...+...++...... .....+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999988753211112222 111 344566667766654332222 112233222
Q ss_pred ----hcCCcEEEEEcCCCChH--HHHHHh---cCCCCCCCCceEEeeccchhhhhhc----------CcceEEEcCCCCH
Q 048627 161 ----LSRIKILIVFDDVTCFT--QLESLI---GSLDWLTPVSRIIITTRNKQVLRNW----------EVRKIYEVEALEY 221 (689)
Q Consensus 161 ----l~~~~~LlVlDdv~~~~--~~~~l~---~~l~~~~~g~~iliTtR~~~~~~~~----------~~~~~~~l~~L~~ 221 (689)
..+++.++|+||++... .++.+. ...........|++|..... ...+ .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 25788999999998743 344432 21111122334566655431 1111 1234689999999
Q ss_pred HHHHHHHHHhccCCCC--CChhHHHHHHHHHHHhCCCchhHHHhhhhh
Q 048627 222 HHALELFSRHAFKRNH--PDVGYEKLSSNVMKYAQGVPLALKVLGCFL 267 (689)
Q Consensus 222 ~~~~~lf~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 267 (689)
+|..+++...+..... ...-..+..+.|++.++|+|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999877632221 112235688999999999999999888776
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=99.02 E-value=6e-09 Score=100.14 Aligned_cols=151 Identities=14% Similarity=0.221 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
.+.+.|+|++|+|||+||+.+++.+..+...+.|+... .. ......+. +.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~----~~~~~~~~-----------------~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS----QYFSPAVL-----------------ENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh----hhhhHHHH-----------------hhcc-cC
Confidence 45788999999999999999999976665666777621 00 00001111 1111 22
Q ss_pred EEEEEcCCCCh---HHHH-HHhcCCCCC-CCCceEE-eeccc---------hhhhhhcCcceEEEcCCCCHHHHHHHHHH
Q 048627 166 ILIVFDDVTCF---TQLE-SLIGSLDWL-TPVSRII-ITTRN---------KQVLRNWEVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 166 ~LlVlDdv~~~---~~~~-~l~~~l~~~-~~g~~il-iTtR~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
-+|||||++.. ..|+ .+...+... ..|..++ +|++. +.+...+.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999863 2333 222222111 2355554 45543 23334445556899999999999999998
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 231 HAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
.+...+. .-.++...-|++.+.|..-.+..+-
T Consensus 173 ~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 173 NAYQRGI--ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 8854432 1225667788888887776554433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=9.5e-11 Score=109.36 Aligned_cols=134 Identities=22% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEe
Q 048627 523 MPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLD 602 (689)
Q Consensus 523 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~ 602 (689)
+...+-|+.+||++|. +..+..++.-+|.++.|+++.|+....-.-..+.+|+.|++++|.+.++-.+-.++.|+++|.
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3445667777777766 555666665667777777777664332221122445555555555555555555555555555
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCCccc
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNIERI 659 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~l 659 (689)
+++|.+ ..+ ++++++-+|..|++++|+.-.- -...+|++|.|+.+.+.+|++..+
T Consensus 359 La~N~i-E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKI-ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhH-hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 555543 222 2344555555555555432110 112345555555555555554433
No 37
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=6.4e-10 Score=109.90 Aligned_cols=280 Identities=19% Similarity=0.227 Sum_probs=186.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCC-CCCcchHHHHHhhcC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDE-NVIPDIDLNFRRLSR 163 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~l~~ 163 (689)
..|.+.++|.|||||||++-.+.. +...|...+++.+...++.. ..+.-.....+.-.. ........+..+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 467899999999999999999999 88889888877766665443 222222222233222 223566677888899
Q ss_pred CcEEEEEcCCCChHH-HHHHhcCCCCCCCCceEEeeccchhhhhhcCcceEEEcCCCCHH-HHHHHHHHhccCCCC---C
Q 048627 164 IKILIVFDDVTCFTQ-LESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEVEALEYH-HALELFSRHAFKRNH---P 238 (689)
Q Consensus 164 ~~~LlVlDdv~~~~~-~~~l~~~l~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~---~ 238 (689)
++.++|+||..+... -..+...+....+.-.|+.|+|..-. ........++.|+.. ++.++|...+..... -
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999976543 33333344444667788999997632 344567778887766 788888777632211 1
Q ss_pred ChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCHHHHHHHHHH----HHhc------CCchHHHHHHHHhcCCCHHHHHH
Q 048627 239 DVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREKEVWESAINK----LQRI------LHPSIREVLKISYDGLDDKEKNI 308 (689)
Q Consensus 239 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~~~~~l~~s~~~L~~~~~~~ 308 (689)
.......+.+|+++..|.|++|...++..+.....+....+.. +... ........+..||.-|...++..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2233567899999999999999999998887655444433332 2211 13456777899999999999999
Q ss_pred hhhcccccCCcCHHHHHHH-HHh----cCCCchhchhHHhhcCceEEcc---CCeEEecHHHHHHHHHHHhh
Q 048627 309 FLDVACFFRGEGVNLVMKF-FDA----SGFYPEIGINVLVDKSLIAIDS---YNKITMHDLLQELGREIVRQ 372 (689)
Q Consensus 309 ~~~la~f~~~~~~~~l~~l-~~~----~~~~~~~~l~~L~~~~li~~~~---~~~~~~H~lv~~~a~~~~~~ 372 (689)
+..++.|...|..+..... .+. +.+..-..+..+++++++...+ .-.|+.-+-++.|+.....+
T Consensus 245 ~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 245 FGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988877632211 111 1222334467788888876543 23455556666666555444
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.94 E-value=4.8e-11 Score=115.63 Aligned_cols=244 Identities=19% Similarity=0.139 Sum_probs=153.1
Q ss_pred eeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecC-CCCCCCCCCC--CcCCc
Q 048627 403 EGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHG-YPLKSLPSNL--SAEKL 479 (689)
Q Consensus 403 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~-~~~~~lp~~~--~~~~L 479 (689)
..|.++.+.. -.+++.+|+.+++||.|+++.|.++..-|.++..+. .+..|-+.+ +.++++|+.. ++..|
T Consensus 70 veirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-----~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 70 VEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-----SLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred eEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhH-----hhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3455544433 446788999999999999999999888888888887 444444444 7888888755 66677
Q ss_pred eeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCC------------cccCcc
Q 048627 480 VFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSL------------KSLPSE 546 (689)
Q Consensus 480 ~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~------------~~~p~~ 546 (689)
+-|.+.-|.+.-+. +.+..+++|..|.+.++.. ..++. ..+..+..++.+-+..|.+. ...|..
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~--q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI--QSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhh--hhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 77776666665433 2355566666665554331 12221 13444555555555444411 111111
Q ss_pred CCCCCCCCEEec-------------------------cCCCCCCCCCCC---CcCCCcEEEccccccccc-CcccccCCC
Q 048627 547 IFNLEFLTKLDL-------------------------SGCSKLKRLPEI---SSGNISWLLLRGSAIEEL-PSSIERQLR 597 (689)
Q Consensus 547 l~~l~~L~~L~l-------------------------~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l-~~~i~~l~~ 597 (689)
.+......-..+ +.|......|.. .+.+|+.|++++|.++.+ +.++..+..
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 111111111111 111111112211 126788999999999876 446888899
Q ss_pred CCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 598 LSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 598 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
++.|.|..|++-..-...+..+..|+.|+|.+|+.+.--|..|..+.+|.+|++-.|.+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 99999999987333334577888999999999888888888888889999999976654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.4e-09 Score=114.79 Aligned_cols=195 Identities=29% Similarity=0.347 Sum_probs=97.1
Q ss_pred EEecCCCC-CCCCCCCCcCCceeeecCCCCccccCcccccCc-cchhhccccCccccccCCCCCCCCCCCcccEEeccCC
Q 048627 460 FHWHGYPL-KSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYS-KLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGS 537 (689)
Q Consensus 460 l~~~~~~~-~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~-~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 537 (689)
+...++.+ ..+........+..|++.++.+..++.....+. +|+.|++..... ..+| ..+.++++|+.|++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~--~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLP--SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch--hhhh--hhhhccccccccccCCc
Confidence 44444444 223222344567777777777766666555553 555555554321 1111 23444555555555544
Q ss_pred CCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccC
Q 048627 538 KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLC 617 (689)
Q Consensus 538 ~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 617 (689)
. +..+|...+..++|+ .|++++|.+..+|..+..+..|++|.+++|.. ...+..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~----------------------~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~ 229 (394)
T COG4886 174 D-LSDLPKLLSNLSNLN----------------------NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLS 229 (394)
T ss_pred h-hhhhhhhhhhhhhhh----------------------heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhh
Confidence 4 334444333444444 44555555555555444444555555555532 33444455
Q ss_pred CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCC
Q 048627 618 KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 618 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
+++++..|.+.+|.. ..++..++.+++|+.|++++|.+++++. +..+.+|+.|++++|.+...+|
T Consensus 230 ~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 230 NLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hcccccccccCCcee-eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 555555555444322 2224445555555666665555555554 5555555666665555554433
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.88 E-value=8.3e-08 Score=103.82 Aligned_cols=243 Identities=14% Similarity=0.101 Sum_probs=127.7
Q ss_pred ccCCCCCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-----cc--ceEEeeeccchh
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKISGD-----FE--GTCFLENVRVES 127 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~ 127 (689)
+...|+.+.|||+|+++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ .++++.+.. .
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~-L- 827 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN-V- 827 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc-c-
Confidence 344668899999999999998862 23334577899999999999999999876421 12 234444211 1
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCC-----cchHHHHHhhc---CCcEEEEEcCCCChH--HHHHHhcCCCCC-CCCceEE
Q 048627 128 QRPGGLAWLRQKLLLNLLKDENVI-----PDIDLNFRRLS---RIKILIVFDDVTCFT--QLESLIGSLDWL-TPVSRII 196 (689)
Q Consensus 128 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~~l~~~l~---~~~~LlVlDdv~~~~--~~~~l~~~l~~~-~~g~~il 196 (689)
.....+...+..++....... .....+...+. ....+||||+++... .-+.|...+.|. ..+++|+
T Consensus 828 ---stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 828 ---VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred ---CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 334455555666664332221 22223333331 224589999997532 112222112111 2345553
Q ss_pred e--eccchh--------hhhhcCcceEEEcCCCCHHHHHHHHHHhccCC-CCCCh-hHHHHHHHHHHHhCCCchhHHHhh
Q 048627 197 I--TTRNKQ--------VLRNWEVRKIYEVEALEYHHALELFSRHAFKR-NHPDV-GYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 197 i--TtR~~~--------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~-~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
+ .+.+.. +...++ ...+..++.+.++..+++..++-.. ...++ ..+-+|+.++...|-.-.||.++-
T Consensus 905 LIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 3 333221 111122 2346779999999999999887432 11122 222233333333333444555444
Q ss_pred hhhc--CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcc
Q 048627 265 CFLY--KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVA 313 (689)
Q Consensus 265 ~~l~--~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la 313 (689)
.+.. +. ..+....+...+. ...+.-....||.+.|.++..+.
T Consensus 984 rAgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHH
Confidence 3332 11 2333333333321 12233345788888877666443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=3.5e-08 Score=97.00 Aligned_cols=218 Identities=20% Similarity=0.272 Sum_probs=124.7
Q ss_pred CCCCcccchhhH---HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 61 NKNQLVGVESTV---EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 61 ~~~~~vGr~~~~---~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
.-+.+||.+.-+ .-|.+++ .++.+....+||++|+||||||+.++......|...-=+. .++.++.
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v--~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr 90 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAV--EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLR 90 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHH--hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHH
Confidence 334555555433 3344445 3455677789999999999999999998776654322111 3444443
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC--ChHHHHHHhcCCCCCCCCceEEe--eccchhhh---hhcCc
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT--CFTQLESLIGSLDWLTPVSRIII--TTRNKQVL---RNWEV 210 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~g~~ili--TtR~~~~~---~~~~~ 210 (689)
+.+-.. -.....+++.+|++|+|. +..+-+.+++.. ..|.-|+| ||.++... .....
T Consensus 91 ~i~e~a-------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 91 EIIEEA-------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHHHHH-------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhh
Confidence 322111 122344889999999995 455667777663 35665554 55555321 22345
Q ss_pred ceEEEcCCCCHHHHHHHHHHhccCCCCC-----ChhHHHHHHHHHHHhCCCchh----HHHhhhhhcCC---CHHHHHHH
Q 048627 211 RKIYEVEALEYHHALELFSRHAFKRNHP-----DVGYEKLSSNVMKYAQGVPLA----LKVLGCFLYKR---EKEVWESA 278 (689)
Q Consensus 211 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~-----~~~~~~~~~~i~~~~~g~Pla----l~~~~~~l~~~---~~~~~~~~ 278 (689)
..++.+++|+.++..+++.+.+...... ..-.++..+.++..++|-..+ +++++...+.. ..+..+..
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 6799999999999999998844222111 112245677788888886653 33333333222 23334443
Q ss_pred HHHHHhc------CCchHHHHHHHHhcCCCHHH
Q 048627 279 INKLQRI------LHPSIREVLKISYDGLDDKE 305 (689)
Q Consensus 279 l~~l~~~------~~~~~~~~l~~s~~~L~~~~ 305 (689)
+++-... .+.++..++..|...=++++
T Consensus 235 l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA 267 (436)
T COG2256 235 LQRRSARFDKDGDAHYDLISALHKSVRGSDPDA 267 (436)
T ss_pred HhhhhhccCCCcchHHHHHHHHHHhhccCCcCH
Confidence 3331111 12345566666666555443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=6.3e-09 Score=115.04 Aligned_cols=112 Identities=29% Similarity=0.365 Sum_probs=96.2
Q ss_pred CcEEEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccC
Q 048627 575 ISWLLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAE 653 (689)
Q Consensus 575 L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 653 (689)
++.|+|+++.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566677777766 6788899999999999999999889999999999999999999999999999999999999999999
Q ss_pred CCCc-cccchhhcc-CCCcEEecCCCCCCCCCCCC
Q 048627 654 TNIE-RIPKSIIQL-FMLRYLLLNCSEGHESIPKR 686 (689)
Q Consensus 654 ~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~p~~ 686 (689)
|+++ .+|..+..+ .++..+++.+|+.+...|.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 9988 888887653 46788999999888877754
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.3e-09 Score=122.90 Aligned_cols=101 Identities=21% Similarity=0.354 Sum_probs=62.1
Q ss_pred ceeEEEecCCC--CCCCCCCC--CcCCceeeecCCC-CccccCcccccCccchhhccccCccccccCCCCCCCCCCCccc
Q 048627 456 EVKYFHWHGYP--LKSLPSNL--SAEKLVFLEVPDN-NIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLV 530 (689)
Q Consensus 456 ~L~~l~~~~~~--~~~lp~~~--~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~ 530 (689)
+++.|-+.++. +..++..+ .++.|++||+++| .+..+|..++.+.+|++|+++++. + ..+ |..+.+|++|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I-~~L--P~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-I-SHL--PSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-c-ccc--chHHHHHHhhh
Confidence 45666666654 45555533 5667777777754 556677777777777777766653 1 222 34666777777
Q ss_pred EEeccCCCCCcccCccCCCCCCCCEEeccC
Q 048627 531 FLNLRGSKSLKSLPSEIFNLEFLTKLDLSG 560 (689)
Q Consensus 531 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 560 (689)
+|++..+..+..+|..+..|++|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 777776665555555554577777776654
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.83 E-value=5.2e-08 Score=89.52 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=97.8
Q ss_pred cCCCCCcccchhhHHHHHHhhc---CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLG---VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~---~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|..-++|||.+.-++.+.-++. ...+....+.+||++|+||||||.-+++.....|. +.+ .... ....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i----~k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAI----EKAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC------SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhh----hhHHH
Confidence 4566789999999888766554 23455778999999999999999999999876653 122 1111 11122
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCC--------CCCCc-----------e
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDW--------LTPVS-----------R 194 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~--------~~~g~-----------~ 194 (689)
+.. ++ ..+ .++-+|.+|+++.. .+-+.|.+.... .+++. -
T Consensus 92 l~~-il-----------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 92 LAA-IL-----------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHH-HH-----------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHH-HH-----------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 211 11 112 23457788999753 333444333211 12222 2
Q ss_pred EEeeccchhhhhhcCc--ceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhh
Q 048627 195 IIITTRNKQVLRNWEV--RKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGC 265 (689)
Q Consensus 195 iliTtR~~~~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 265 (689)
|=.|||...+...+.. .-..+++..+.+|-.++..+.+..-. -.-.++.+.+|++.+.|-|.-..-+-.
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 4467777644333222 23568999999999999988763222 123366799999999999975444433
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=5.9e-08 Score=102.13 Aligned_cols=178 Identities=20% Similarity=0.300 Sum_probs=107.3
Q ss_pred cCCCCCcccchhhHHH---HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEE---IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|...+.+||++..+.. +.+++. ......+.|+|++|+||||+|+.+++.....|.. +.. .. .....
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~~---~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---VT---SGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---cc---ccHHH
Confidence 3445679999988766 888774 3345678899999999999999999987544321 111 10 11211
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEe--eccchhh--h-hhc
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIII--TTRNKQV--L-RNW 208 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~ili--TtR~~~~--~-~~~ 208 (689)
+ ++++..... ....+++.+|++|+++.. .+.+.++..+. .+..++| ||.+... . ...
T Consensus 77 i-r~ii~~~~~------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 77 L-REVIEEARQ------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred H-HHHHHHHHH------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 1 112211110 111357789999999754 34555555543 2444444 3443321 1 112
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhccCCCCCC-hhHHHHHHHHHHHhCCCchhHHHh
Q 048627 209 EVRKIYEVEALEYHHALELFSRHAFKRNHPD-VGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 209 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
.....+.+.+++.++...++.+.+....... .-..+..+.+++.++|.+..+..+
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 3346899999999999999988653211111 223556788999999998765433
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.80 E-value=7.7e-08 Score=93.06 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCccc--chhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHH
Q 048627 62 KNQLVG--VESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 62 ~~~~vG--r~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
.+.|++ .+..++.+.+++. ....+.|.|+|++|+|||++|+.++++........+|+.. ...... . ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~~~~~---~----~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQA---D----PE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HHHHHh---H----HH
Confidence 345552 4456777888764 2345688999999999999999999986655445556552 111110 0 11
Q ss_pred HHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---H-HHHHhcCCCC-CCCCceEEeeccchh---------hh
Q 048627 140 LLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---Q-LESLIGSLDW-LTPVSRIIITTRNKQ---------VL 205 (689)
Q Consensus 140 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~g~~iliTtR~~~---------~~ 205 (689)
++ ..+.+ .-+|||||++... . .+.+...+.. ...+.++|+|++... +.
T Consensus 84 ~~-----------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 84 VL-----------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred HH-----------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 11 11222 2389999996532 1 2223222211 123457888887532 11
Q ss_pred hhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhh
Q 048627 206 RNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGC 265 (689)
Q Consensus 206 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 265 (689)
..+.....+++++++.++...++...+-.... .-..+..+.+++.+.|+|..+..+..
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 12222467999999999999988765422211 12245567788888888877655543
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=3.1e-07 Score=99.04 Aligned_cols=183 Identities=18% Similarity=0.210 Sum_probs=111.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~ 117 (689)
|...+.+||.+..++.|.+++..+ .-...+.++|..|+||||+|+.+++.+... |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 445567999999999999999633 224566799999999999999999875311 1111
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH--HHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ--LESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... ..+..+ ++++...... -..++.-++|||+++.... +..|+..+.......++
T Consensus 91 iEIDA----as~-rgVDdI-ReLIe~a~~~------------P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDA----ASN-RGVDEM-AALLERAVYA------------PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecc----ccc-ccHHHH-HHHHHHHHhc------------cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 11110 000 111111 1111111100 0124455888999986543 56666655544567787
Q ss_pred Eeeccchh-hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHH
Q 048627 196 IITTRNKQ-VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKV 262 (689)
Q Consensus 196 liTtR~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 262 (689)
|++|.+.. +... ......+++..++.++..+.+.+.+...+. ....+..+.|++.++|... |+..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77777653 3222 233468999999999999998887633322 1225567889999988664 5544
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=3.6e-07 Score=94.35 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=110.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---------------------cce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---------------------EGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~ 117 (689)
|...+.++|.+..++.+.+.+..+ .-+..+.++|++|+||||+|+.+++.+.... ...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 345567999999999999988632 2346678999999999999999998863211 011
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
..+.. ... ..+.. .+++...+... -..+++-++|+|+++... .+..++..+....+..++
T Consensus 91 ~~~~~----~~~-~~v~~-ir~i~~~~~~~------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDA----ASR-TKVEE-MREILDNIYYS------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecc----ccc-CCHHH-HHHHHHHHhcC------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11110 000 11111 11121111100 012455699999998654 356676666554556667
Q ss_pred Eeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 196 IITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 196 liTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
|++|.+. .+... ......+++.+++.++..+.+...+...+. .-..+.+..|++.++|.|..+
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 7666543 33322 233468999999999999988876533221 122456788999999988643
No 49
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=4e-08 Score=85.17 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=78.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
+++.|.|+.|+||||++++++.+.. ....++|+.... ... ...... +..+.+.+...+++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~--------~~~-~~~~~~---------~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDD--------PRD-RRLADP---------DLLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCC--------HHH-HHHhhh---------hhHHHHHHhhccCCc
Confidence 5789999999999999999998866 334455655211 111 000000 012233333334778
Q ss_pred EEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhh------cCcceEEEcCCCCHHHH
Q 048627 167 LIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN------WEVRKIYEVEALEYHHA 224 (689)
Q Consensus 167 LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~------~~~~~~~~l~~L~~~~~ 224 (689)
+++||++.....|...+..+....+..+|++|+........ .+....+++.||+..|-
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999888887777766555567899999987755432 23345789999998763
No 50
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.79 E-value=2.8e-07 Score=94.46 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=106.5
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
..-..++|++..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.+........++.. . .+.. .....+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~-~~~~~~~~- 87 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDE-RGIDVIRN- 87 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccc-cchHHHHH-
Confidence 3445689999999999999853 334457999999999999999999986433211122221 0 0111 11111111
Q ss_pred HHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-hhh-hcCcceEEE
Q 048627 140 LLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLR-NWEVRKIYE 215 (689)
Q Consensus 140 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~~~-~~~~~~~~~ 215 (689)
.+........ .....+-++++|+++.. .....+...+....+.+.+|+++.... ... .......++
T Consensus 88 ~i~~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 88 KIKEFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHHHHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 1111111000 00123568999998653 234445444444455567777664321 111 112234789
Q ss_pred cCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 216 VEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 216 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
+.+++.++...++...+...+.. -..+.+..+++.++|.+.-+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999999888776433321 22456788899999987653
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=6.1e-10 Score=113.06 Aligned_cols=174 Identities=25% Similarity=0.338 Sum_probs=104.7
Q ss_pred EEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCC
Q 048627 459 YFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGS 537 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 537 (689)
..+++.+.+..+|..+ .+..|..+.+..|.+..+|..++++..|..++++.+. + ..+|. .++.| -|+.|.+++|
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-l-S~lp~--~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-L-SHLPD--GLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-h-hcCCh--hhhcC-cceeEEEecC
Confidence 3455666677777777 4567777888888888888888888888888887754 3 33443 33333 3788888766
Q ss_pred CCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccC
Q 048627 538 KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLC 617 (689)
Q Consensus 538 ~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 617 (689)
+ ++.+|..++.+..|..|+.+.|. +..+|..++.+.+|+.|.+..|++ ..+|..++
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~ne----------------------i~slpsql~~l~slr~l~vrRn~l-~~lp~El~ 209 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNE----------------------IQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC 209 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhh----------------------hhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh
Confidence 6 78888888877777777777654 333444444455555555555443 34444444
Q ss_pred CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchh
Q 048627 618 KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSI 663 (689)
Q Consensus 618 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~ 663 (689)
.| .|..|+++. +.+..+|-+|..|..|++|-|.+|.+.+-|..+
T Consensus 210 ~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 210 SL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred CC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 22 244455543 333445555555555555555555555544443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=1.2e-08 Score=107.90 Aligned_cols=178 Identities=30% Similarity=0.396 Sum_probs=135.7
Q ss_pred cceeEEEecCCCCCCCCCCCCcC--CceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEE
Q 048627 455 AEVKYFHWHGYPLKSLPSNLSAE--KLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFL 532 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~~~~~--~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L 532 (689)
..+..+.+..+.+..||...... +|+.|++++|.+..++..+..+++|+.|.+..+.. ..++ ...+.++.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~--~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLP--KLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhh--hhhhhhhhhhhe
Confidence 47889999999999999988554 89999999999999998899999999999998752 2333 233378999999
Q ss_pred eccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCC-CCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCC
Q 048627 533 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKS 611 (689)
Q Consensus 533 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p-~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~ 611 (689)
++++|. ...+|..+.....|++|.+++|....... .....++..|.+.++.+..++..++.++++++|++++|.+ ..
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i-~~ 269 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI-SS 269 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc-cc
Confidence 999988 77888866667779999999885333222 2223556666677777777777788888888888888876 44
Q ss_pred CCcccCCCCCccEEEeecCCCCCccCcc
Q 048627 612 LPSSLCKLKSLGVLDLHGCSNLRRLPEC 639 (689)
Q Consensus 612 lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 639 (689)
++. ++.+.+|+.|+++++......|..
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhh
Confidence 544 777888888888887666555543
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=6.1e-07 Score=95.60 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=111.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh--ccccceEEeeeccc-hh-cCCCChH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS--GDFEGTCFLENVRV-ES-QRPGGLA 134 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~-~~-~~~~~~~ 134 (689)
|...+.++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+. +.+...++.+.... .. ..+.++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 3345678999999999999886332 245668999999999999999998863 22222333321000 00 0000000
Q ss_pred HHHHHHHHHhcCC-CCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccc-hhhh
Q 048627 135 WLRQKLLLNLLKD-ENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVL 205 (689)
Q Consensus 135 ~l~~~~l~~~~~~-~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~-~~~~ 205 (689)
.+ ... ....+.+..+.+.+ .+++-++|||+++.. ..+..++..+....+.+.+|+++.. ..+.
T Consensus 89 el--------~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 89 EI--------DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred Ee--------cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 00 000 00001111222211 245668999999754 3466676666544455555555543 3332
Q ss_pred hh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 206 RN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 206 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
.. ......+++.+++.++...++...+-..+.. ...+.+..|++.++|.+.-+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 22 2334689999999999999998876433321 12456888999999988644
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=9e-09 Score=92.70 Aligned_cols=127 Identities=28% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCCCCcccEEeccCCCCCcccCccCC-CCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEE
Q 048627 523 MPRLNKLVFLNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWL 601 (689)
Q Consensus 523 ~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L 601 (689)
..+..+++.|+|++|.+ ..+. .++ .+.+|+.|++++|. ++.+. .+..+++|+.|
T Consensus 15 ~~n~~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N~----------------------I~~l~-~l~~L~~L~~L 69 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNNQ----------------------ITKLE-GLPGLPRLKTL 69 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS------------------------S--T-T----TT--EE
T ss_pred ccccccccccccccccc-cccc-chhhhhcCCCEEECCCCC----------------------Ccccc-CccChhhhhhc
Confidence 34445567777776663 2232 343 35566666666544 44443 35556666667
Q ss_pred ecCCCCCCCCCCccc-CCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCCccccc----hhhccCCCcEEecC
Q 048627 602 DLTDCKMFKSLPSSL-CKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNIERIPK----SIIQLFMLRYLLLN 675 (689)
Q Consensus 602 ~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~ 675 (689)
++++|.+ ..++..+ ..+++|++|++++|..... --..+..+++|+.|++.+|++...+. -+..+|+|+.|+-.
T Consensus 70 ~L~~N~I-~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 70 DLSNNRI-SSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccCCCCC-CccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7666665 3343333 2466677777666554221 11345567778888888877764442 24667888877643
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.9e-10 Score=108.18 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=129.6
Q ss_pred cceeEEEecCCCCCCCCC--CC-CcCCceeeecCCCCcc---ccCcccccCccchhhccccCccccccCCCCC-CCCCCC
Q 048627 455 AEVKYFHWHGYPLKSLPS--NL-SAEKLVFLEVPDNNIE---QLGDCVKHYSKLNRIIHAACNKLIAKTPNPT-LMPRLN 527 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~--~~-~~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~-~~~~l~ 527 (689)
.+|+...+.++++..++. .. .+++++.||++.|-+. .+-+....|++|+.|+++.+.-. .|.-+ .-..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccccchhhhh
Confidence 588899999999888885 33 6889999999999665 34445678889999988875422 11111 123568
Q ss_pred cccEEeccCCCCCc-ccCccCCCCCCCCEEeccCCCCC--CCCCCCCcCCCcEEEcccccccccC--cccccCCCCCEEe
Q 048627 528 KLVFLNLRGSKSLK-SLPSEIFNLEFLTKLDLSGCSKL--KRLPEISSGNISWLLLRGSAIEELP--SSIERQLRLSWLD 602 (689)
Q Consensus 528 ~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~l--~~~p~~~~~~L~~L~l~~~~l~~l~--~~i~~l~~L~~L~ 602 (689)
+|+.|.|+.|.+.- .+-..+-.+|+|+.|++.+|... ...+...++.|+.|+|++|.+-.++ .-++.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 89999999988542 22222346888999999888422 2334444577888888888777665 3467788888888
Q ss_pred cCCCCCCC-CCCcc-----cCCCCCccEEEeecCCCCCccC--cccCCCCCCCEEEccCCCCc
Q 048627 603 LTDCKMFK-SLPSS-----LCKLKSLGVLDLHGCSNLRRLP--ECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 603 l~~~~~~~-~lp~~-----~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~ 657 (689)
++.|.+.. .+|+. ....++|++|++..|+.. .++ ..+..+.+|+.|.+.+|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 88877632 23332 234567777777775542 222 23344556666666666554
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.72 E-value=2.3e-07 Score=95.78 Aligned_cols=196 Identities=18% Similarity=0.121 Sum_probs=108.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-cc-eEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-EG-TCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 136 (689)
|...+.++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++.+.... .. .+++.. ...... ....+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~-~~~~~~--~~~~~ 85 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV-ADFFDQ--GKKYL 85 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech-hhhhhc--chhhh
Confidence 33446789999999999999853 3445688999999999999999999865432 22 233331 111000 00000
Q ss_pred HH--HHHHHhcCC-CCCCcchHHHHHhh---------cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccch
Q 048627 137 RQ--KLLLNLLKD-ENVIPDIDLNFRRL---------SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 137 ~~--~~l~~~~~~-~~~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
.. .+....... .........+++.+ ...+-+||+||++... ....+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 000000000 00011112222111 1334589999997542 2333433333334556777776543
Q ss_pred -hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 203 -QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 203 -~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
.+... ......+.+.+++.++...++...+...+.. -..+....+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22222 2233578899999999999888765332221 225567888889988876543
No 57
>PLN03025 replication factor C subunit; Provisional
Probab=98.71 E-value=4.8e-07 Score=91.93 Aligned_cols=183 Identities=14% Similarity=0.162 Sum_probs=106.3
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-ccccceEEeeeccchhcCCCChHHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
|..-..++|.+..++.|.+++.. +..+.+.++|++|+||||+|+.+++.+. ..|...+.-.+ .+.. .+... .
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~-~~~~~-v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDD-RGIDV-V 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccc-ccHHH-H
Confidence 34455789999999999888753 3345678999999999999999999863 33332211111 1111 12222 2
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccch-hhhhh-cCcceE
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKI 213 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~-~~~~~~ 213 (689)
+............ .-.++.-++|||+++... ....+...+......+++++++... .+... ......
T Consensus 82 r~~i~~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 82 RNKIKMFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 2222211111000 001346689999997643 2344444333334566777666443 22211 122357
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 214 YEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 214 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+++.+++.++....+...+-..+.. -..+....|++.++|....
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 8999999999999888776333321 1245678888999887643
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=1.2e-09 Score=104.68 Aligned_cols=183 Identities=20% Similarity=0.189 Sum_probs=110.7
Q ss_pred CcCCceeeecCCCCcc-----ccCcccccCccchhhccccCccccccCC-----------CCCCCCCCCcccEEeccCCC
Q 048627 475 SAEKLVFLEVPDNNIE-----QLGDCVKHYSKLNRIIHAACNKLIAKTP-----------NPTLMPRLNKLVFLNLRGSK 538 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~l~l~~~~~l~~~~~-----------~~~~~~~l~~L~~L~l~~~~ 538 (689)
+.++|++|++++|.+. .+-.-+..+..|++|.+.+|..- .... .....++-++|+++....|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4468999999998774 23333556777777777776421 0000 00112223444444444443
Q ss_pred CCcc----cCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEccccccc-----ccCcccccCCCCCEEecCCCCCC
Q 048627 539 SLKS----LPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIE-----ELPSSIERQLRLSWLDLTDCKMF 609 (689)
Q Consensus 539 ~~~~----~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~-----~l~~~i~~l~~L~~L~l~~~~~~ 609 (689)
.-.. +...+...+ .|+.+.+..|.|. -+...+..+++|+.||+.+|.++
T Consensus 169 len~ga~~~A~~~~~~~----------------------~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHP----------------------TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHHHHhcc----------------------ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 2110 111122233 4455555555443 34556788899999999999875
Q ss_pred C----CCCcccCCCCCccEEEeecCCCCCccC----ccc-CCCCCCCEEEccCCCCc-----cccchhhccCCCcEEecC
Q 048627 610 K----SLPSSLCKLKSLGVLDLHGCSNLRRLP----ECL-GQLSSPILLNLAETNIE-----RIPKSIIQLFMLRYLLLN 675 (689)
Q Consensus 610 ~----~lp~~~~~l~~L~~L~l~~~~~~~~~p----~~l-~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~ 675 (689)
. .+...++.+++|++|+++.|.....-. ..+ ...++|+.|.+.+|.++ .+..++...|.|..|+|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 3 344566778899999999987653322 222 24688999999999876 344455668899999999
Q ss_pred CCCCC
Q 048627 676 CSEGH 680 (689)
Q Consensus 676 ~~~~l 680 (689)
+|.+.
T Consensus 307 gN~l~ 311 (382)
T KOG1909|consen 307 GNRLG 311 (382)
T ss_pred ccccc
Confidence 99873
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-09 Score=105.16 Aligned_cols=205 Identities=19% Similarity=0.174 Sum_probs=126.3
Q ss_pred CcCCceeeecCCCCccccCc--ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCcc-CCCCC
Q 048627 475 SAEKLVFLEVPDNNIEQLGD--CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSE-IFNLE 551 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~ 551 (689)
++.+|++..+.++.+...+. ..+.|++++.|+++.+--- .-.+...-...|++|+.|+++.|.+.....+. -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 56788888888888776653 5777888888888764211 11111122345688888888887754322211 12567
Q ss_pred CCCEEeccCCCCCCCCCC---CCcCCCcEEEccccc-ccccCcccccCCCCCEEecCCCCCCCCCC--cccCCCCCccEE
Q 048627 552 FLTKLDLSGCSKLKRLPE---ISSGNISWLLLRGSA-IEELPSSIERQLRLSWLDLTDCKMFKSLP--SSLCKLKSLGVL 625 (689)
Q Consensus 552 ~L~~L~l~~~~~l~~~p~---~~~~~L~~L~l~~~~-l~~l~~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L 625 (689)
+|+.|.++.|+....--. ..+++|+.|++..|. +..-.....-+..|+.|+|++|.+.. ++ .-.+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 788888888875421000 112567778887663 32222223445678888888887643 22 346778888888
Q ss_pred EeecCCCCC-ccCcc-----cCCCCCCCEEEccCCCCcccc--chhhccCCCcEEecCCCCCCC
Q 048627 626 DLHGCSNLR-RLPEC-----LGQLSSPILLNLAETNIERIP--KSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 626 ~l~~~~~~~-~~p~~-----l~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+++.|.... ..|+. ...+++|+.|++..|++..++ ..+..+++|+.|.+..|++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888765433 13332 234678888888888886555 235556778888887777654
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=7e-07 Score=95.33 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=111.3
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~ 117 (689)
|.....+||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. |..+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3455679999999999999996332 24678899999999999999999885321 1111
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. +.. ..+..+ ++++..... .-..++.-++|||+++... ....++..+.....+.++
T Consensus 90 iEIDA----As~-~~VddI-Reli~~~~y------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDA----ASR-TKVEDT-RELLDNVPY------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecc----ccc-CCHHHH-HHHHHHHhh------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 11110 000 111111 111111100 0112556689999998643 455666555544456677
Q ss_pred Eeeccchh-hhh-hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 196 IITTRNKQ-VLR-NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 196 liTtR~~~-~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
|++|.+.. +.. .......+++.+++.++..+.+...+...+. ....+....|++.++|.+..+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 77766542 221 1244478999999999999988877633322 222456788999999987543
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=5.8e-07 Score=96.62 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=108.5
Q ss_pred cCCCCCcccchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
|.....++|.+..++++.+|+..- ....+.+.|+|++|+||||+|+.+++.+. ++. +.+. .+.. ... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~-r~~-~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQ-RTA-DV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----cccc-ccH-HH
Confidence 344567999999999999998521 12267899999999999999999999874 221 2222 1111 111 22
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH------HHHHHhcCCCCCCCCceEEeeccchh-hhh--h
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT------QLESLIGSLDWLTPVSRIIITTRNKQ-VLR--N 207 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~g~~iliTtR~~~-~~~--~ 207 (689)
..++........ .....++-+||||+++... ....+...+. ..+..||+|+.+.. ... .
T Consensus 81 i~~~i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 81 IERVAGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 223322221110 0111367799999997642 2444443333 23455666664432 111 1
Q ss_pred cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 208 WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 208 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
......+.+.+++.++....+...+...+.. -..+....|++.++|....+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2234678999999999999888776433322 124568889999998776543
No 62
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.5e-09 Score=100.02 Aligned_cols=133 Identities=25% Similarity=0.235 Sum_probs=102.1
Q ss_pred ccCCCCCCCCEEeccCCCCCCCCCCC--CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCc
Q 048627 545 SEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSL 622 (689)
Q Consensus 545 ~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 622 (689)
..+..+..|.+|++++|... .+-+. ..+.++.|+++.|.+..+.. +..+++|+.||+++|.+ ..+-.+-.++-|.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL-AECVGWHLKLGNI 354 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh-HhhhhhHhhhcCE
Confidence 34556788999999997632 22211 22578899999999988765 88899999999999986 5555555678899
Q ss_pred cEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccc--cchhhccCCCcEEecCCCCCCCC
Q 048627 623 GVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERI--PKSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 623 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
+.|+|++|. +..+ +.++.+-+|..||+++|++..+ ...++++|.|+.+.+.+|++.+.
T Consensus 355 KtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 355 KTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999853 3333 3566778899999999998843 35789999999999999998763
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=4.9e-07 Score=87.12 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCcccch-hhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHH
Q 048627 62 KNQLVGVE-STVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 62 ~~~~vGr~-~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
.+.|++.. ..+..+..+... .....+.|+|++|+|||+|+..+++....+...+.|+.. .+ . .......
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~---~----~~~~~~~ 87 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA---A----AGRLRDA 87 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH---h----hhhHHHH
Confidence 34555444 444444444421 223459999999999999999999987666556666652 11 0 0000111
Q ss_pred HHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---HHH-HHhcCCCC-CCCCceEEeeccch---------hhhh
Q 048627 141 LLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---QLE-SLIGSLDW-LTPVSRIIITTRNK---------QVLR 206 (689)
Q Consensus 141 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~g~~iliTtR~~---------~~~~ 206 (689)
+ +.+ .+.-+|||||++... .++ .+...+.. ...|..||+|++.. .+..
T Consensus 88 ~-----------------~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 88 L-----------------EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred H-----------------HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 1 111 122489999996321 122 22221111 13466799999853 1122
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
.+.....+++++++.++..+++.+++...+. .-.++....|++.+.|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 2333468999999999999999987643222 122456677777777655443
No 64
>PTZ00202 tuzin; Provisional
Probab=98.68 E-value=5.1e-06 Score=83.69 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=118.0
Q ss_pred HHhccCCCccCCCchh--HHHHHHHHHHHhhccccc----ccccCCCCCcccchhhHHHHHHhhcCCC-CCeeEEEEEec
Q 048627 22 EAASLSGFHSLNMRRE--SELINEVVNHILKRLDEV----FQLRDNKNQLVGVESTVEEIESLLGVES-KDVWALGIWGI 94 (689)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~i~~~v~~~~~~~----~~~~~~~~~~vGr~~~~~~l~~~l~~~~-~~~~~v~I~G~ 94 (689)
-++..-||..++.+.+ +-..+-.++..++..+.. ...|.+...|+||+.+++++...|...+ +.++++.|+|+
T Consensus 215 gv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~ 294 (550)
T PTZ00202 215 GVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGF 294 (550)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECC
Confidence 3444555554433222 222334455555554411 2467788899999999999999996333 34579999999
Q ss_pred CCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC--cchHHHHHhh-----c-CCcE
Q 048627 95 GGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI--PDIDLNFRRL-----S-RIKI 166 (689)
Q Consensus 95 gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~l~~~l-----~-~~~~ 166 (689)
+|+|||||++.+..... ...++.+. .+...++..++.+++...... +....+.+.+ . +++.
T Consensus 295 ~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtP 363 (550)
T PTZ00202 295 RGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETP 363 (550)
T ss_pred CCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999997654 22444432 345788889999988643222 3334443332 2 5666
Q ss_pred EEEEc--CCCChHH-HHHHhcCCCCCCCCceEEeeccchhhhh---hcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 167 LIVFD--DVTCFTQ-LESLIGSLDWLTPVSRIIITTRNKQVLR---NWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 167 LlVlD--dv~~~~~-~~~l~~~l~~~~~g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
+||+- +-.+..- ..+ ...+.+...-|.|++.---+..-. .++.-..|.+++++.++|.++..+..
T Consensus 364 VLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 364 LLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred EEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 66653 2222211 111 111222234466766554443211 13344689999999999998876554
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3e-06 Score=86.50 Aligned_cols=281 Identities=14% Similarity=0.150 Sum_probs=159.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccc--eEEeeeccchhcCCCCh
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEG--TCFLENVRVESQRPGGL 133 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~ 133 (689)
+...|+.+.+|+.+++++...|.. ....+.-+.|+|.+|.|||+.++.+++++...... .+|+.+.. . ...
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~----~-~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE----L-RTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee----C-CCH
Confidence 445566799999999999988752 22334458999999999999999999997665333 46666322 2 566
Q ss_pred HHHHHHHHHHhcCCCCC----CcchHHHHHhhc--CCcEEEEEcCCCChHHH--HHHhcCCCCCCC-CceE--Eeeccch
Q 048627 134 AWLRQKLLLNLLKDENV----IPDIDLNFRRLS--RIKILIVFDDVTCFTQL--ESLIGSLDWLTP-VSRI--IITTRNK 202 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~----~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~--~~l~~~l~~~~~-g~~i--liTtR~~ 202 (689)
.++...++..+...... .+....+.+.+. ++.+++|||+++....- +.+..-+.+... .++| |..+-+.
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 67888888877532211 144455555554 57899999999653321 222222221122 3443 3333333
Q ss_pred hhh--------hhcCcceEEEcCCCCHHHHHHHHHHhc---cCCCCCChhHHHHHHHHHHHhCCCc-hhHHHhhhh--hc
Q 048627 203 QVL--------RNWEVRKIYEVEALEYHHALELFSRHA---FKRNHPDVGYEKLSSNVMKYAQGVP-LALKVLGCF--LY 268 (689)
Q Consensus 203 ~~~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~--l~ 268 (689)
... ..++. ..+..++-+.+|-.+.+..++ |......+...+.+..++..-+|-. .|+..+-.+ ++
T Consensus 167 ~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 222 22233 348889999999999988776 3344444555566666666666533 333332222 11
Q ss_pred CC------CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccCCcCHHH----HHHHHHhcCC---Cc
Q 048627 269 KR------EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFRGEGVNL----VMKFFDASGF---YP 335 (689)
Q Consensus 269 ~~------~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~~~~~----l~~l~~~~~~---~~ 335 (689)
.. ....-..+.... -.....-....|+.+.+..+..++....++.... ...+....+. ..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 10 122222221111 1122333477888888877766555433344433 3333333333 22
Q ss_pred hhchhHHhhcCceEEc
Q 048627 336 EIGINVLVDKSLIAID 351 (689)
Q Consensus 336 ~~~l~~L~~~~li~~~ 351 (689)
...+.+|...|++...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3447778888888754
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.1e-07 Score=100.12 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=112.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-c-c-ceEEeeec------------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-F-E-GTCFLENV------------ 123 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f-~-~~~~~~~~------------ 123 (689)
|.....+||.+..++.|.+++..+ .=...+.++|+.|+||||+|+.+++.+... . . ..|..+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 345567999999999999998532 123456899999999999999999886432 1 0 01111100
Q ss_pred cchhcC-CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeecc
Q 048627 124 RVESQR-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTR 200 (689)
Q Consensus 124 ~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR 200 (689)
.+.... ...+..+ +++...+.. .-..+++-++|||+++.. .....|+..+.......++|++|.
T Consensus 91 iEidAas~~kVDdI-ReLie~v~~------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQY------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHHh------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 000000 0111111 222221110 112356779999999764 446666666654455666665554
Q ss_pred c-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 201 N-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 201 ~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
+ ..+... ......+++.+++.++...++.+.+-..+. ....+.+..|++.++|.|.-+.
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 333322 233478999999999999998876532221 2224567889999999886433
No 67
>PF14516 AAA_35: AAA-like domain
Probab=98.65 E-value=1.3e-05 Score=81.60 Aligned_cols=204 Identities=12% Similarity=0.153 Sum_probs=118.7
Q ss_pred cccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc-CCCChHH
Q 048627 57 QLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ-RPGGLAW 135 (689)
Q Consensus 57 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 135 (689)
..+.+.+.+|.|...-+++.+.+.. ....+.|.|+..+|||+|..++.+.....--.+++++ +..... ...+...
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHH
Confidence 3455677788999666666666532 2347899999999999999999998765533444555 333222 2234554
Q ss_pred HHHHHHHHhcC----CC-----C-----C-CcchHHHHHh-hc--CCcEEEEEcCCCChHH----HHHHhcCCC------
Q 048627 136 LRQKLLLNLLK----DE-----N-----V-IPDIDLNFRR-LS--RIKILIVFDDVTCFTQ----LESLIGSLD------ 187 (689)
Q Consensus 136 l~~~~l~~~~~----~~-----~-----~-~~~~~~l~~~-l~--~~~~LlVlDdv~~~~~----~~~l~~~l~------ 187 (689)
..+.+...+.. .. + . ......+.+. +. +++++|+||+++..-. ...+...++
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 44444444332 11 0 0 0112223332 22 6899999999964321 122222211
Q ss_pred CCCC--Cc-e-EEeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 188 WLTP--VS-R-IIITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 188 ~~~~--g~-~-iliTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
...+ .. + |++.+........ ......+.|++|+.+|...|...+... ......++|...++|+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHH
Confidence 0011 11 1 2222211111111 223357999999999999998877422 112338999999999999
Q ss_pred hHHHhhhhhcCC
Q 048627 259 ALKVLGCFLYKR 270 (689)
Q Consensus 259 al~~~~~~l~~~ 270 (689)
.+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999998653
No 68
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=3.8e-06 Score=85.91 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=112.0
Q ss_pred ccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh-hccc-cceE--------Eeee----c
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI-SGDF-EGTC--------FLEN----V 123 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~-~~~f-~~~~--------~~~~----~ 123 (689)
.|.....++|.+...+.+.+.+..+ .-+..+.++|+.|+||+|+|..+++.+ ++.- .... -++. .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3555678999999999999988532 224568899999999999999999885 2221 1000 0000 0
Q ss_pred cch-hcCCCChHHHHHHHHHHhcC---CCCCCcchHHHHHhhc-----CCcEEEEEcCCCCh--HHHHHHhcCCCCCCCC
Q 048627 124 RVE-SQRPGGLAWLRQKLLLNLLK---DENVIPDIDLNFRRLS-----RIKILIVFDDVTCF--TQLESLIGSLDWLTPV 192 (689)
Q Consensus 124 ~~~-~~~~~~~~~l~~~~l~~~~~---~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 192 (689)
+.+ ...+.++..+.... ..-.. .....+.+..+.+.+. +.+.++|+||++.. .....|+..+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEeccc-ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 000 00001111000000 00000 0011122333333332 56678999999754 3345555554433455
Q ss_pred ceEEeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 193 SRIIITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 193 ~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
+.+|++|.+. .+... ......+.+.+++.++..+++...... .. .+....++..++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666666654 33322 334578999999999999999876411 11 1223678999999998654443
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=2.8e-06 Score=90.15 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=110.8
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc-------ceEEeee---------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE-------GTCFLEN--------- 122 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~~~~--------- 122 (689)
|.....++|.+..++.|...+..+ .-.+.+.++|++|+||||+|+.+++.+-.... ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 445567899999999999877532 23467889999999999999999988532110 0111110
Q ss_pred ---ccchhc-CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEE
Q 048627 123 ---VRVESQ-RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRII 196 (689)
Q Consensus 123 ---~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~il 196 (689)
+.+... ...++..+. .+...... .-..+++-++|+|+++.. ..+..|+..+....+.+.+|
T Consensus 96 h~Dv~eidaas~~~vd~Ir-~iie~a~~------------~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIR-RIIESAEY------------KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred CCcEEEeeccCCCCHHHHH-HHHHHHHh------------ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 000000 001111111 11111100 012356678999999864 34667776665445556655
Q ss_pred e-eccchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 197 I-TTRNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 197 i-TtR~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
+ ||+...+... ......+++.+++.++....+...+...+.. ...+....|++.++|.+.-+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 4 4444444433 2334679999999999999998887433321 12455778999999987543
No 70
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.9e-08 Score=89.45 Aligned_cols=104 Identities=27% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCcEEEcccccccccCcccc-cCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCccc-CCCCCCCEEEc
Q 048627 574 NISWLLLRGSAIEELPSSIE-RQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECL-GQLSSPILLNL 651 (689)
Q Consensus 574 ~L~~L~l~~~~l~~l~~~i~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l 651 (689)
+++.|+|.++.|..+. .++ .+.+|+.|++++|.+ ..++ ++..+++|+.|++++|... .+++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEEC
Confidence 3456666667776653 455 578999999999998 4554 5788999999999997665 454444 35899999999
Q ss_pred cCCCCcccc--chhhccCCCcEEecCCCCCCC
Q 048627 652 AETNIERIP--KSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 652 ~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~ 681 (689)
++|++.++. ..+..+++|+.|++.+||+..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999988544 456789999999999999864
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=6.1e-07 Score=95.51 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=109.3
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-----c-------------------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-----F------------------- 114 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f------------------- 114 (689)
|...+++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 4455679999999999999995322 24567899999999999999999885321 0
Q ss_pred --cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCC
Q 048627 115 --EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLT 190 (689)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~ 190 (689)
...+.+.. ... .++..+. ++...+.. .-..++.-++|||+++.. .....|+..+..-.
T Consensus 91 ~hpDviEIdA----as~-~gVDdIR-eLie~~~~------------~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 91 RFVDYIEMDA----ASN-RGVDEMA-QLLDKAVY------------APTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CCCcceEecc----ccc-CCHHHHH-HHHHHHHh------------chhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 01111110 000 1111111 11111000 001355668999999865 34667777665445
Q ss_pred CCceEEeecc-chhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 191 PVSRIIITTR-NKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 191 ~g~~iliTtR-~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
..+.+|++|. ...+... ......+.+..++.++..+.+.+.+...+.. ...+..+.|++.++|.|...
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 5666555544 4444432 2334689999999999999888765322211 12445688999999999643
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.62 E-value=1e-06 Score=85.08 Aligned_cols=170 Identities=15% Similarity=0.209 Sum_probs=96.8
Q ss_pred Ccccch-hhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHH
Q 048627 64 QLVGVE-STVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLL 142 (689)
Q Consensus 64 ~~vGr~-~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 142 (689)
.++|.. ..+..+.++.. ....+.+.|+|++|+|||+|++.+++........+.|+.. .... ... ..+
T Consensus 24 f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~~---~~~----~~~-- 91 (235)
T PRK08084 24 FYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKRA---WFV----PEV-- 91 (235)
T ss_pred cccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHHh---hhh----HHH--
Confidence 344632 23455555543 2234578899999999999999999987655445556552 1100 000 011
Q ss_pred HhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh---HHHHHHh-cCCCC-CCCC-ceEEeeccch---------hhhhh
Q 048627 143 NLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF---TQLESLI-GSLDW-LTPV-SRIIITTRNK---------QVLRN 207 (689)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-~~iliTtR~~---------~~~~~ 207 (689)
.+.+.. --+|+|||+... ..|+..+ ..+.. ...| .++|+||+.. .....
T Consensus 92 ---------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 92 ---------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ---------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 111111 137899999643 2232211 11111 1123 4788998754 22223
Q ss_pred cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 208 WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 208 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
+....++++.++++++-.+.+.+++...+. .-.+++..-|++.+.|..-++..+
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 444578999999999999998876633221 222566777888887776555433
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.60 E-value=9.7e-07 Score=85.04 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=88.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
..+.|+|.+|+|||+|++.+++.+...-..++|+.. . .+... ...+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~--------------~~~~~~~~~~~d- 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR--------------GPELLDNLEQYE- 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh--------------hHHHHHhhhhCC-
Confidence 568899999999999999999887655455667662 1 11110 011222233222
Q ss_pred EEEEcCCCCh---HHHHH-HhcCCCC-CCCCceEEeeccchhh---------hhhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 167 LIVFDDVTCF---TQLES-LIGSLDW-LTPVSRIIITTRNKQV---------LRNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 167 LlVlDdv~~~---~~~~~-l~~~l~~-~~~g~~iliTtR~~~~---------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
+||+||+... ..|+. +...+.. ...|..+|+|++.... ...+....++++.+++.++..+.+..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6789999532 23322 3222221 1346778888875321 1122334678999999999999988665
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 233 FKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
..... .-.+++..-+++.+.|....+..+-
T Consensus 180 ~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 180 SRRGL--HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 33221 1224567777777777765554433
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.1e-06 Score=89.56 Aligned_cols=186 Identities=18% Similarity=0.155 Sum_probs=107.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc----c-----------------cce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD----F-----------------EGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f-----------------~~~ 117 (689)
|...+.+||.+...+.|...+..+ .-+..+.++|++|+||||+|+.+++.+... + ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 445567999998888888887532 223567899999999999999999875321 0 011
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
..+.. +.. .++..+ +++...... .-..+++-++|+|+++.. .....++..+........+
T Consensus 89 ~el~a----a~~-~gid~i-R~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDA----ASN-RGIDEI-RKIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeC----ccc-CCHHHH-HHHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 11110 000 112211 112111110 012245679999999754 3355666665433344444
Q ss_pred Eeeccc-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-chhHHHhhh
Q 048627 196 IITTRN-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV-PLALKVLGC 265 (689)
Q Consensus 196 liTtR~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 265 (689)
|++|.+ ..+... ......+++.+++.++....+...+...+. .-..+....|++.++|- +.|+..+..
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444433 333222 234468999999999999988877633222 12245677888877654 556555544
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.60 E-value=6.5e-07 Score=86.42 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCCCcc-cchhhH-HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 61 NKNQLV-GVESTV-EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 61 ~~~~~v-Gr~~~~-~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
..+.|+ |...+. ..+.++.. .....+.+.|+|++|+|||+||+.+++.....-....++... . .. .
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~-------~~---~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S-------PL---L 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H-------hH---H
Confidence 344555 554443 44555543 223346788999999999999999999864443344555421 0 00 0
Q ss_pred HHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCC-CCCc-eEEeeccchhhhh--------
Q 048627 139 KLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWL-TPVS-RIIITTRNKQVLR-------- 206 (689)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~-~~g~-~iliTtR~~~~~~-------- 206 (689)
.+ ... ...-++|+||++... ..+.+...+... ..+. .+++|++......
T Consensus 84 ~~------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 84 AF------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred HH------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 00 011 223478899996432 222332222111 2333 3666666432111
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhh
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFL 267 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 267 (689)
.+.....++++++++++-..++...+-.... .-.++..+.+++...|++..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222468999999998877777664322111 1224567788888889988776665544
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=5.6e-07 Score=80.52 Aligned_cols=123 Identities=20% Similarity=0.171 Sum_probs=70.9
Q ss_pred ccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhc
Q 048627 66 VGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL 145 (689)
Q Consensus 66 vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 145 (689)
+|++..+..+...+.. ...+.+.|+|++|+|||++|+.+++.+......++++. ....... ........ ..
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~~-~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELFG-HF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHhh-hh-
Confidence 4788899999988853 23567889999999999999999998754333444444 2111111 00000000 00
Q ss_pred CCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-----HHHHHHhcCCCCC---CCCceEEeeccchh
Q 048627 146 KDENVIPDIDLNFRRLSRIKILIVFDDVTCF-----TQLESLIGSLDWL---TPVSRIIITTRNKQ 203 (689)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~---~~g~~iliTtR~~~ 203 (689)
............++.++|+||++.. ..+..+....... ..+..||+|+....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999853 2233333333221 36778888887653
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=4.8e-07 Score=93.83 Aligned_cols=173 Identities=19% Similarity=0.251 Sum_probs=99.3
Q ss_pred CCCcccchhhHHHHHHhhcCC-----------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 62 KNQLVGVESTVEEIESLLGVE-----------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
...+.|++..++++.+.+... -..++.+.|+|++|+|||++|+.+++.....|-.+ . .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~------- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-G------- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-h-------
Confidence 346889999999998876311 12356689999999999999999999876543211 1 0
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHH-HhhcCCcEEEEEcCCCChH----------------HHHHHhcCCCCC--CC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNF-RRLSRIKILIVFDDVTCFT----------------QLESLIGSLDWL--TP 191 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 191 (689)
..+....... ....+..+. ..-...+.+|+|||++... .+..++..+... ..
T Consensus 190 ---~~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 ---SELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred ---HHHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 0111110000 000111111 1122456799999986421 122333222211 23
Q ss_pred CceEEeeccchhhhh-----hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 192 VSRIIITTRNKQVLR-----NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 192 g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
+..||.||....... .......+.++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 567788877543221 1123467999999999999999988744332211 11456777777764
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.59 E-value=4e-08 Score=91.82 Aligned_cols=50 Identities=34% Similarity=0.538 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 64 QLVGVESTVEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.||||+++++++...+. ......+.+.|+|++|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 334457899999999999999999999997766
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.4e-06 Score=90.48 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=109.2
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc---ceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE---GTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~ 135 (689)
|.....+||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+..... ..|..+. .-..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------sC~~ 83 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------SCLE 83 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------HHHH
Confidence 4455679999999999999986332 2346789999999999999999988543211 0111110 0000
Q ss_pred HHHHHHHHhcC----CCCCCcchHHHHHh-----hcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEE-eeccchh
Q 048627 136 LRQKLLLNLLK----DENVIPDIDLNFRR-----LSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRII-ITTRNKQ 203 (689)
Q Consensus 136 l~~~~l~~~~~----~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~il-iTtR~~~ 203 (689)
+.......+.. .....+.+..+.+. ..++.-++|||+++.. ..+.+|+..+........+| .||....
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 00000000000 00000111111111 2356679999999764 34777776665433445544 4444444
Q ss_pred hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 204 VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 204 ~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+... ....+.|.+.+++.++..+.+...+...+. .-..+....|++.++|.+.-
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 4322 233467999999999999988877633221 22355678899999999863
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.9e-06 Score=89.24 Aligned_cols=180 Identities=17% Similarity=0.189 Sum_probs=111.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc---------------------cccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG---------------------DFEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~---------------------~f~~~ 117 (689)
|.....+||.+..++.|.+.+..+. -++.+.++|+.|+||||+|+.+++.+-. .+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3455679999999999998885332 2457889999999999999999876421 12222
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. +.. .++..+. ++....... -..++.-++|+|+++.. .....|+..+....+.+.+
T Consensus 88 ~eida----as~-~~vddIR-~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDA----ASN-TSVDDIK-VILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEec----ccC-CCHHHHH-HHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 33321 111 2222221 222221110 01245668999999754 3356666666555566666
Q ss_pred Eeeccc-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 196 IITTRN-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 196 liTtR~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
|++|.+ ..+... ......+++.+++.++....+...+...+.. -.++....|++.++|.+..
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 665543 343332 3345789999999999999988876433321 2245677899999998764
No 81
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=7.4e-08 Score=106.59 Aligned_cols=89 Identities=29% Similarity=0.405 Sum_probs=85.1
Q ss_pred CCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecC
Q 048627 597 RLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLN 675 (689)
Q Consensus 597 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 675 (689)
.++.|+|++|.+.+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|+++ .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred CCCCCCCCCC
Q 048627 676 CSEGHESIPK 685 (689)
Q Consensus 676 ~~~~l~~~p~ 685 (689)
+|.+.+.+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9999999995
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.58 E-value=9.1e-07 Score=84.12 Aligned_cols=178 Identities=15% Similarity=0.203 Sum_probs=95.2
Q ss_pred cccchhhH--HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHHHHHH
Q 048627 65 LVGVESTV--EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 65 ~vGr~~~~--~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
++|-..+. ................+.|+|..|+|||.|.+++++.+....+ .++|+. .......+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~ 79 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREF 79 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHH
Confidence 35754442 2233333322223445789999999999999999999765433 345554 12233333
Q ss_pred HHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---HHH-HHhcCCC-CCCCCceEEeeccch-h--------hhh
Q 048627 141 LLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---QLE-SLIGSLD-WLTPVSRIIITTRNK-Q--------VLR 206 (689)
Q Consensus 141 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~l~~~l~-~~~~g~~iliTtR~~-~--------~~~ 206 (689)
...+.. .....+++.++.- =+|+|||++... .|+ .+...+. ....|.+||+|++.. . ...
T Consensus 80 ~~~~~~-----~~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 80 ADALRD-----GEIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp HHHHHT-----TSHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH
T ss_pred HHHHHc-----ccchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh
Confidence 333332 2334455555533 367899996432 122 2211111 113467899999643 1 122
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
.+.....+++.+++.++..+++.+.+...+-. -.++++.-+++.+.+..-.+.
T Consensus 154 Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 154 RLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 23445689999999999999999887433322 224566667777666554443
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.1e-06 Score=90.58 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=106.0
Q ss_pred CCcccchhhHHHHHHhhcCCCC--------CeeEEEEEecCCCCHHHHHHHHHHHhhcc--------------------c
Q 048627 63 NQLVGVESTVEEIESLLGVESK--------DVWALGIWGIGGIGKTTIARAIFDKISGD--------------------F 114 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--------------------f 114 (689)
+.++|.+..++.|.+.+..+.. -++.+.++|++|+|||++|+.+++.+-.. +
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999999964321 35678899999999999999999874221 1
Q ss_pred cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCC
Q 048627 115 EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPV 192 (689)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 192 (689)
+...++... ... ..+.++ +++....... -..+++-++|+|+++... ....++..+....++
T Consensus 85 pD~~~i~~~---~~~-i~i~~i-R~l~~~~~~~------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 85 PDVRVVAPE---GLS-IGVDEV-RELVTIAARR------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred CCEEEeccc---ccc-CCHHHH-HHHHHHHHhC------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 112222100 000 111111 1121111110 012445588889997643 344555555444556
Q ss_pred ceEEeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 193 SRIIITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 193 ~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
..+|++|.+. .+.+. ......+.+.+++.++..+.+..... . ..+.+..++..++|.|.....+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 6666655554 44433 23447899999999999998875421 1 1345778899999999754333
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.6e-06 Score=87.91 Aligned_cols=176 Identities=17% Similarity=0.216 Sum_probs=109.9
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-----cccceEEeeeccchhcCCCChHHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-----DFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
..++|.+..++.+.+.+..+ .-.+++.++|+.|+||||+|+.++..+-. .++....+..... .. ..+.++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~-i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KS-IGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CC-CCHHHHH
Confidence 45789999999999998532 23567789999999999999999987522 1222222221111 11 2223322
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC--ChHHHHHHhcCCCCCCCCceEEeeccchhhh-hh-cCcceE
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT--CFTQLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKI 213 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~-~~-~~~~~~ 213 (689)
++...+.... ..+++-++|+|+++ +...+..++..+....+++.+|++|.+.+.. +. ......
T Consensus 80 -~~~~~~~~~p------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 80 -NIIEEVNKKP------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred -HHHHHHhcCc------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 2222222111 12445566667664 4556788888887667788888887665322 22 233478
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 214 YEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 214 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
+++.++++++...++..... .. ..+.+..++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~---~~---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYN---DI---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhc---CC---CHHHHHHHHHHcCCCHHHHH
Confidence 99999999999988876541 11 13346788899999886544
No 85
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.1e-06 Score=89.25 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=113.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc----ccceEEeeeccchhcCCCCh
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD----FEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 133 (689)
.|.....++|.+...+.+...+..+ .-+..+.|+|+.|+||||+|..+++.+-.. +........ ..-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~--------~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP--------DPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC--------CCC
Confidence 4556778999999999999999633 235578899999999999999999986431 111100000 000
Q ss_pred HHHHHHHHHH-------hc----CC------CCCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCC
Q 048627 134 AWLRQKLLLN-------LL----KD------ENVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWL 189 (689)
Q Consensus 134 ~~l~~~~l~~-------~~----~~------~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~ 189 (689)
....+.+... +. .. ....+.+..+.+++. +++-++|+|+++... ....++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 0011111100 00 00 011122333333332 466789999997543 345555554433
Q ss_pred CCCceE-Eeeccchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 190 TPVSRI-IITTRNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 190 ~~g~~i-liTtR~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
.....+ ++|++...+... ......+++.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 455444433332 2234689999999999999998743111 1 224457789999999998654433
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.56 E-value=3e-06 Score=88.16 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc----cc-----------------ce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD----FE-----------------GT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f~-----------------~~ 117 (689)
|.....++|.+..++.+.+++..+ .-...+.++|++|+||||+|+.++..+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 345567899999999999998532 234577899999999999999999885321 10 11
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
.++... .. ..... .+++...+... -..+++-++|+|+++.. .....++..+....+.+.+
T Consensus 89 ~~~~~~----~~-~~~~~-~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAA----SN-NGVDD-IREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeecc----cc-CCHHH-HHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 111100 00 11111 11222221111 01245558889998654 3455666665544456666
Q ss_pred Eeeccchh-hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 196 IITTRNKQ-VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 196 liTtR~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
|++|.+.. +... ......+++.+++.++..+++...+-..+.. -..+.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 66665443 2222 2334678999999999999888766333221 12456788899999988755433
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-06 Score=91.85 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~ 117 (689)
|.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 345567999999999999998532 234567899999999999999999875321 1111
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... .++..+ ++++..+.. .-..+++-++|+||++.. .....|+..+......+.+
T Consensus 91 ieida----as~-~gvd~i-r~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDA----ASR-TGVEET-KEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeec----ccc-cCHHHH-HHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 11110 000 111111 111111110 012356679999999754 3466666666544455655
Q ss_pred E-eeccchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHh
Q 048627 196 I-ITTRNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVL 263 (689)
Q Consensus 196 l-iTtR~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 263 (689)
| +||....+... ......+++.+++.++....+...+-..+. ....+....|++.++|.+. |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 45444334322 334578999999999998888775532221 2224557788999999764 44443
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2e-06 Score=92.92 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=107.5
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---------------------cce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---------------------EGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~ 117 (689)
|...+.+||.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-..- ...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 445567999999999999999632 2245788999999999999999998743210 011
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH--HHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ--LESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... ..+.. ++.++..... .-..+++-++|||+++.... ...|+..+......+++
T Consensus 91 lEida----As~-~gVd~-IRelle~a~~------------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDA----ASN-TGIDN-IREVLENAQY------------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEec----ccc-CCHHH-HHHHHHHHHh------------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 11110 000 11111 1111111100 00124566899999976543 44455554433455667
Q ss_pred Eeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 196 IITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 196 liTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
|++|.+. .+... ......+++.+++.++....+.+.+-..+.. -..+....|++.++|.+.-+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 6666543 22221 2333568888999999999888776433321 22456788999999988643
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3e-06 Score=90.70 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=108.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc---------------------cccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG---------------------DFEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~---------------------~f~~~ 117 (689)
|...+.+||-+..++.|.+++..+ .-...+.++|++|+||||+|+.+++.+-. .|..+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 445567999999999999999532 22456789999999999999999987521 11122
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... ..+..+ ++++..+.-. -..++.-++|||+++.. ....+++..+....+.+++
T Consensus 91 ~eida----as~-~~v~~i-R~l~~~~~~~------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDA----ASR-TKVEDT-RELLDNIPYA------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcc----ccc-CCHHHH-HHHHHHHhhc------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22221 011 222222 1222221110 01245568899999864 3455666665544556766
Q ss_pred Eeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 196 IITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 196 liTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
|++|.+. .+... ......+++.+++.++....+...+-..+.. ...+....|++.++|.+.-+
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 6655443 33322 2233578899999999888776665332221 12345778889999988643
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=91.70 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=97.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
..+.|+|..|+|||+|++.+++.+.... ..++|+. ...+...+...+.... .....+.+.+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~~- 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEICQ- 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhcc-
Confidence 4588999999999999999999865432 2334544 1233344443332210 123334444443
Q ss_pred cEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccch-h--------hhhhcCcceEEEcCCCCHHHHHHHHHH
Q 048627 165 KILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNK-Q--------VLRNWEVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 165 ~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~~-~--------~~~~~~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
.-+||+||+.... ..+.+...+.. ...|..||+|+... . +...+...-++.+.+++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478899995421 22333222211 13445688886532 1 122234456789999999999999998
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhh
Q 048627 231 HAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGC 265 (689)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 265 (689)
.+-..+....-.++....|++.+.|.|..+.-+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 87432211123366788899999999987765543
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=2.1e-06 Score=81.99 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=85.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
.+.+.|+|++|+|||+|++.++.... ..|+... .....+...+. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~-----------~~~~~~~~~~~-----------------~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN-----------EIGSDAANAAA-----------------E-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH-----------HcchHHHHhhh-----------------c--
Confidence 45689999999999999998887642 2355410 11111111111 1
Q ss_pred EEEEEcCCCCh----HHHHHHhcCCCCCCCCceEEeeccch---------hhhhhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 166 ILIVFDDVTCF----TQLESLIGSLDWLTPVSRIIITTRNK---------QVLRNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 166 ~LlVlDdv~~~----~~~~~l~~~l~~~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
-+|++||++.. ..+-.+...+. ..|..+|+|++.. .....+....++++.+++.++..+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 27888999542 22222222222 3467799988742 223334555789999999999999999887
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 233 FKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
-...- .-.+++...|++.+.|..-++..
T Consensus 167 ~~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 33221 12256677788888877766554
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=7.3e-06 Score=88.82 Aligned_cols=189 Identities=17% Similarity=0.190 Sum_probs=108.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--c--cce----EEee-eccchhc-
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD--F--EGT----CFLE-NVRVESQ- 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f--~~~----~~~~-~~~~~~~- 128 (689)
|...+++||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-.. . .+. |-.+ .++....
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 345667999999999999998633 234667899999999999999998875311 0 000 0000 0000000
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhh--------cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEee
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRL--------SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIIT 198 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliT 198 (689)
.+.++.. + +......++.+++.+ .++.-++|||+++... ....|+..+......+++|++
T Consensus 91 ~h~D~~e--------l--daas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 91 RFVDYTE--------L--DAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred CCCceee--------c--CcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 0000000 0 000001111222211 2345588999998643 466677666544455566655
Q ss_pred c-cchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 199 T-RNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 199 t-R~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
| ....+... ......+++.+++.++..+.+...+...+.. ...+....|++.++|.+.-+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 5 43333322 3345789999999999999888776333321 12456788899999877543
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.50 E-value=1.7e-06 Score=95.83 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=101.4
Q ss_pred cCCCCCcccchhhHH---HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVE---EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|...+.|+|.+..+. .+.+.+. .+....+.|+|++|+||||+|+.+++.....|. .+.. .. ..+..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~~---~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---VL---AGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---hh---hhhHH
Confidence 344567899998774 5666664 344567889999999999999999988765542 1211 10 11111
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhh--cCCcEEEEEcCCCC--hHHHHHHhcCCCCCCCCceEEee--ccchh--hhh-
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRL--SRIKILIVFDDVTC--FTQLESLIGSLDWLTPVSRIIIT--TRNKQ--VLR- 206 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~g~~iliT--tR~~~--~~~- 206 (689)
+ ++.+.. ..+.+ .+++.++||||++. ..+.+.++..+. .|..++|+ |.+.. +..
T Consensus 93 i-r~~i~~-------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 93 L-RAEVDR-------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred H-HHHHHH-------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1 111111 11111 24567999999964 445566665432 34545553 33331 111
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCC-----CCCChhHHHHHHHHHHHhCCCchh
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKR-----NHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.......+.+++++.++...++.+.+-.. .....-.++....|++.+.|....
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 12234579999999999999988765310 111122345678888888887553
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=2e-06 Score=93.37 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=109.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---------------------cce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---------------------EGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~ 117 (689)
|.....+||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-... ...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 4456789999999999999986332 235578999999999999999998753211 111
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... ..+..+ +++...+.. .-..+++-++|||+++... ....|+..+.......++
T Consensus 91 ieida----as~-~~Vddi-R~li~~~~~------------~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~F 152 (647)
T PRK07994 91 IEIDA----ASR-TKVEDT-RELLDNVQY------------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (647)
T ss_pred eeecc----ccc-CCHHHH-HHHHHHHHh------------hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEE
Confidence 11110 000 111111 111111110 0123566799999997643 456666555444455566
Q ss_pred Eeeccc-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 196 IITTRN-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 196 liTtR~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
|++|.+ ..+... ......+++.+++.++....+...+-..+. ....+....|++.++|.+.-+
T Consensus 153 IL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred EEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 555544 444322 333578999999999999988876522221 122455778999999988743
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.6e-06 Score=88.01 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=108.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--ccceEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD--FEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
|.....++|.+..++.|.+++..+ .-...+.++|++|+||||+|..+++.+... +....|....... .+.-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCHH
Confidence 445568999999999999998532 224558899999999999999999886321 1000000000000 000000
Q ss_pred HHHHHHH-------hcC-CCCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeec-c
Q 048627 137 RQKLLLN-------LLK-DENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-R 200 (689)
Q Consensus 137 ~~~~l~~-------~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTt-R 200 (689)
-+.+... +.+ .....+.+..+.+.+ .+++-++|+|+++.. ..+..++..+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0000000 000 000011122222222 245568899999754 34666766665555566665555 4
Q ss_pred chhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 201 NKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 201 ~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
...+... ......+++.++++++..+.+...+-..+. .-..+.+..+++.++|.+.-+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3333322 122357899999999999888776532221 122556888999999988643
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.47 E-value=7.1e-06 Score=76.55 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=94.8
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccceEEeeeccchhcCCCC
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGTCFLENVRVESQRPGG 132 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 132 (689)
.+.+.+..+ .-...+.++|+.|+||||+|+.+.+.+-.. +....++... ... ..
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~-~~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS-IK 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc-CC
Confidence 455555322 224678899999999999999999886421 1112222110 000 11
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccch-hhhhh-c
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRN-W 208 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~-~ 208 (689)
...+ +++...+.... ..+.+-++|+||++.. ...+.++..+....+.+.+|++|++. .+... .
T Consensus 78 ~~~i-~~i~~~~~~~~------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 78 VDQV-RELVEFLSRTP------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHH-HHHHHHHccCc------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 1111 12222211110 1245668999999754 34566766665555566777766654 22221 2
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 209 EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 209 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.....+++.+++.++..+++... + . ..+.+..+++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~--g---i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ--G---I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc--C---C---CHHHHHHHHHHcCCCccc
Confidence 23468999999999999988776 1 1 145688999999999853
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=3.5e-06 Score=90.03 Aligned_cols=184 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc---------------------ce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE---------------------GT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---------------------~~ 117 (689)
|.....++|++..++.+.+.+..+ .-++.+.++|+.|+||||+|+.+++.+...-. ..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 445667999999999999988533 23467889999999999999999988532100 01
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
.++.. ... ..+..+ +.+....... -..+++-++|+|+++.. .....|+..+......+.+
T Consensus 91 ieIda----as~-igVd~I-ReIi~~~~~~------------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvf 152 (605)
T PRK05896 91 VELDA----ASN-NGVDEI-RNIIDNINYL------------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVF 152 (605)
T ss_pred EEecc----ccc-cCHHHH-HHHHHHHHhc------------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEE
Confidence 11110 000 111111 1111111100 01123446999999763 3455665554433445555
Q ss_pred Eeec-cchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHh
Q 048627 196 IITT-RNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVL 263 (689)
Q Consensus 196 liTt-R~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 263 (689)
|++| ....+... ......+++.+++.++....+...+...+.. -..+.+..+++.++|.+. |+..+
T Consensus 153 IL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 153 IFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred EEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 5444 43333322 3344689999999999998888765332211 124457788999999775 44333
No 98
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=4.6e-07 Score=79.15 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=69.9
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc-----ccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC----cchH
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD-----FEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI----PDID 155 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~~~ 155 (689)
+.+++.|+|++|+|||+++..+++.+... -..++|+. .... .....+...++..+....... ...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSS-RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCC-CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34688999999999999999999986543 23445555 2222 467788888888887765441 4445
Q ss_pred HHHHhhcCC-cEEEEEcCCCCh---HHHHHHhcCCCCCCCCceEEeeccc
Q 048627 156 LNFRRLSRI-KILIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 156 ~l~~~l~~~-~~LlVlDdv~~~---~~~~~l~~~l~~~~~g~~iliTtR~ 201 (689)
.+.+.+... ..+||+||++.. ..++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 555566544 459999999765 23444433323 566777777765
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.43 E-value=4.3e-06 Score=78.58 Aligned_cols=265 Identities=17% Similarity=0.236 Sum_probs=146.5
Q ss_pred cCCCCCcccchhhHHHHHHhhc---CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLG---VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~---~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|..-..|||.++..+++.=.+. ...+..-.|.++|++|.||||||.-+++.+.-.+. +. .+..-..+.++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~t-sGp~leK~gDlaa 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----IT-SGPALEKPGDLAA 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ec-ccccccChhhHHH
Confidence 4455689999999888877775 23345678999999999999999999999764321 11 0111111122222
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH-HHHH-hcCCCC--------CCCCce-----------
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ-LESL-IGSLDW--------LTPVSR----------- 194 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~l-~~~l~~--------~~~g~~----------- 194 (689)
+ +. .++... ++.+|+++.... .+++ .+...+ .++++|
T Consensus 97 i----Lt-----------------~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 I----LT-----------------NLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred H----Hh-----------------cCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 1 11 122223 456788754321 2222 122111 133333
Q ss_pred EEeeccchhhhhhc--CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCH
Q 048627 195 IIITTRNKQVLRNW--EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREK 272 (689)
Q Consensus 195 iliTtR~~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 272 (689)
|=.|||...+..-+ ....+.+++.-+.+|-.+...+.+..-+ -.-.++.+.+|+++..|-|.-..-+-+..+.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD--- 229 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD--- 229 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH---
Confidence 44688865433221 2234678888899999998888762211 1222556899999999999654333333221
Q ss_pred HHHHHHHHH--HHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc--CCcCHHHHHHHHHhcCCCchhchh-HHhhcCc
Q 048627 273 EVWESAINK--LQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF--RGEGVNLVMKFFDASGFYPEIGIN-VLVDKSL 347 (689)
Q Consensus 273 ~~~~~~l~~--l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~--~~~~~~~l~~l~~~~~~~~~~~l~-~L~~~~l 347 (689)
+..+... +...........+..-=..|+.-+++.+..+.-.+ ..+..+.++...+.+....++.++ .|++.||
T Consensus 230 --fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gf 307 (332)
T COG2255 230 --FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGF 307 (332)
T ss_pred --HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhch
Confidence 1100000 00000111233333334456666666666555443 335677777766555444444433 5889999
Q ss_pred eEEccCCeEE
Q 048627 348 IAIDSYNKIT 357 (689)
Q Consensus 348 i~~~~~~~~~ 357 (689)
++....++..
T Consensus 308 i~RTpRGR~a 317 (332)
T COG2255 308 IQRTPRGRIA 317 (332)
T ss_pred hhhCCCccee
Confidence 9988777654
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.3e-06 Score=90.95 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=106.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~ 117 (689)
|.....+||.+..++.+.+++..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 345567999999999999998632 224567899999999999999999885321 1111
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. ... ..+..+ ++++...... -..+++-++|+|+++... ....++..+......+.+
T Consensus 91 ~ei~~----~~~-~~vd~i-r~l~~~~~~~------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDA----ASN-TQVDAM-RELLDNAQYA------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeec----ccc-CCHHHH-HHHHHHHhhC------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 11110 000 111111 1222211110 012556789999998654 355666665544455666
Q ss_pred Eeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 196 IITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 196 liTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
|++|.+. .+... ......+++.+++.++..+.+...+...+. ....+....|++.++|.+.
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 6555443 33222 222367899999999999888776532221 1224456888999999875
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=9.4e-06 Score=84.57 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=106.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--------ccceEEeeeccchhcCC
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD--------FEGTCFLENVRVESQRP 130 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 130 (689)
|...+.++|.+..++.+.+.+..+ .-++.+.++|++|+||||+|+.+++.+... |...++-. .. ...
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~- 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASN- 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccC-
Confidence 445567899999999999999632 234688899999999999999998876431 22222111 00 011
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeec-cchhhhhh
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-RNKQVLRN 207 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTt-R~~~~~~~ 207 (689)
.....+. ++...+... -..+++-++|+|+++... .+..++..+......+.+|+++ ....+...
T Consensus 88 ~~~~~i~-~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 88 NSVDDIR-NLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred CCHHHHH-HHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1122221 222221110 012345579999986543 3556655444333445555554 33322222
Q ss_pred -cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 208 -WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 208 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
......+++.+++.++....+...+...+.. -..+.+..+++.++|.+..
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 2334578999999999998888766433321 1245678888889987653
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=7e-06 Score=85.44 Aligned_cols=173 Identities=20% Similarity=0.243 Sum_probs=96.7
Q ss_pred CCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-
Q 048627 62 KNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR- 129 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 129 (689)
.+.+.|++..++++.+.+.. +-..++.|.++|++|+|||++|+.+++.....|- .+. .......
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~~l~~~~ 205 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GSELVQKF 205 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hHHHhHhh
Confidence 34678999999999887631 1134567899999999999999999998754321 111 1110000
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HH---HHHHhcCCCCC--CC
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQ---LESLIGSLDWL--TP 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~ 191 (689)
........+.+ +...-...+.+|+|||++.. .. +..++..+... ..
T Consensus 206 ~g~~~~~i~~~----------------f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 206 IGEGARLVREL----------------FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred ccchHHHHHHH----------------HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 00001111111 11112345689999999643 11 22233222211 23
Q ss_pred CceEEeeccchhhhhh--c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 192 VSRIIITTRNKQVLRN--W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 192 g~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
+..||.||...+.... . .....+.++..+.++..++|..++.+...... .....+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 4567777765432221 1 23467999999999999999987643222111 11455666666654
No 103
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1e-06 Score=89.18 Aligned_cols=136 Identities=28% Similarity=0.441 Sum_probs=86.9
Q ss_pred cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCC
Q 048627 496 VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI 575 (689)
Q Consensus 496 ~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L 575 (689)
+..+.+++.|++++| .+ ..+|. + -.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L-~sLP~---L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DI-ESLPV---L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CC-cccCC---C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----ccc
Confidence 344677888888877 45 45552 1 2358888998888888888654 3578999999887777777 457
Q ss_pred cEEEccccc---ccccCcccccCCCCCEEecCCCCCC--CCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEE
Q 048627 576 SWLLLRGSA---IEELPSSIERQLRLSWLDLTDCKMF--KSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLN 650 (689)
Q Consensus 576 ~~L~l~~~~---l~~l~~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 650 (689)
+.|++.++. +..+|. +|+.|.+.++... ..+|.. -.++|++|.+++|.... +|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 888877654 345554 4556666443211 111111 12588999998887552 443332 5788888
Q ss_pred ccCCC
Q 048627 651 LAETN 655 (689)
Q Consensus 651 l~~~~ 655 (689)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87653
No 104
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.40 E-value=1.5e-08 Score=97.24 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=137.7
Q ss_pred CcCCceeeecCCCCcc-----ccCcccccCccchhhccccCc--cccccCCC-----CCCCCCCCcccEEeccCCCCCcc
Q 048627 475 SAEKLVFLEVPDNNIE-----QLGDCVKHYSKLNRIIHAACN--KLIAKTPN-----PTLMPRLNKLVFLNLRGSKSLKS 542 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~l~l~~~~--~l~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~ 542 (689)
.+..+..+++++|.+. .+...+.+.+.|+..++++-. .+...+|. ...+-..++|++|||++|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3456677777777663 233445555566666555421 01011110 11233457999999999987665
Q ss_pred cCcc----CCCCCCCCEEeccCCCCCCCCC--------------C-CCcCCCcEEEcccccccc-----cCcccccCCCC
Q 048627 543 LPSE----IFNLEFLTKLDLSGCSKLKRLP--------------E-ISSGNISWLLLRGSAIEE-----LPSSIERQLRL 598 (689)
Q Consensus 543 ~p~~----l~~l~~L~~L~l~~~~~l~~~p--------------~-~~~~~L~~L~l~~~~l~~-----l~~~i~~l~~L 598 (689)
.+.. +..+..|++|+|.+|..-..-- . .....|+.+...+|.+.. +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 5543 4568899999999997431000 0 011578899999888763 44557778999
Q ss_pred CEEecCCCCCCC----CCCcccCCCCCccEEEeecCCCCCc----cCcccCCCCCCCEEEccCCCCc-----cccchh-h
Q 048627 599 SWLDLTDCKMFK----SLPSSLCKLKSLGVLDLHGCSNLRR----LPECLGQLSSPILLNLAETNIE-----RIPKSI-I 664 (689)
Q Consensus 599 ~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~-----~lp~~~-~ 664 (689)
+.+.++.|.+.. .+...+..+++|++|+|..|..... +...+..+++|++|+++.|.++ .+...+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999998732 2234577899999999999876532 3445667889999999999987 344444 3
Q ss_pred ccCCCcEEecCCCCCCC
Q 048627 665 QLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 665 ~l~~L~~L~l~~~~~l~ 681 (689)
..|+|++|.+.+|.+..
T Consensus 268 ~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITR 284 (382)
T ss_pred cCCCCceeccCcchhHH
Confidence 47899999999998753
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=86.53 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=108.8
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc--c---------------------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF--E--------------------- 115 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~--------------------- 115 (689)
|...+.+||.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+.... .
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 345567999999999999999532 2244578999999999999999998753210 0
Q ss_pred ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCc
Q 048627 116 GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVS 193 (689)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~ 193 (689)
.++.+. .... .++..+ +++...+.. .-..+++-++|+|+++.. .....|+..+.......
T Consensus 88 dvieid----aas~-~gvd~i-Rel~~~~~~------------~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 88 DVVELD----AASH-GGVDDT-RELRDRAFY------------APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eEEEec----cccc-cCHHHH-HHHHHHHHh------------hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 011110 0000 111111 111111000 001245568899999754 34666666665445556
Q ss_pred eEEeec-cchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHh
Q 048627 194 RIIITT-RNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVL 263 (689)
Q Consensus 194 ~iliTt-R~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 263 (689)
.+|++| ....+... ......+++.+++.++..+++...+...+.. ...+....|++.++|.+. |+..+
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 44444432 3345789999999999998887765333221 124456788899999875 33333
No 106
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.39 E-value=6.4e-06 Score=81.13 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred CcccchhhHHHHHHhhc-------------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhc
Q 048627 64 QLVGVESTVEEIESLLG-------------VESKDVWALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQ 128 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~-------------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 128 (689)
.++|.+...++|.++.. ........+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 47787777666654321 0123356788999999999999999998753211 1111222 000
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhc-CCcEEEEEcCCCC----------hHHHHHHhcCCCCCCCCceEEe
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLS-RIKILIVFDDVTC----------FTQLESLIGSLDWLTPVSRIII 197 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~----------~~~~~~l~~~l~~~~~g~~ili 197 (689)
..+.. ...+. ....+.+.+. ...-+|++|+++. .+..+.++...........+++
T Consensus 83 -----~~l~~----~~~g~-----~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 -----ADLVG----EYIGH-----TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred -----HHhhh----hhccc-----hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 01111 10000 0111111111 1123889999964 2345556555443333345555
Q ss_pred eccchhhhh------h-c-CcceEEEcCCCCHHHHHHHHHHhcc
Q 048627 198 TTRNKQVLR------N-W-EVRKIYEVEALEYHHALELFSRHAF 233 (689)
Q Consensus 198 TtR~~~~~~------~-~-~~~~~~~l~~L~~~~~~~lf~~~~~ 233 (689)
++....... . . .....+.+++++.++..+++.+.+.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 554322100 1 1 1235689999999999999987763
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=2e-05 Score=85.67 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=110.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccc---e-----EEee-eccchhc-
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEG---T-----CFLE-NVRVESQ- 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~---~-----~~~~-~~~~~~~- 128 (689)
|.....+||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-..... . |-.+ .++....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 345668999999999999999632 234578899999999999999999985322110 0 0000 0000000
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhh-----cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeec-c
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRL-----SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-R 200 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTt-R 200 (689)
.+.++..+-. ......+.+..+.+.+ .+++-++|+|+++... ....|+..+....+.+.+|++| .
T Consensus 99 ~h~Dv~e~~a-------~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 99 RHVDVLEMDA-------ASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred CCCceEEecc-------cccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 0000000000 0000001111121111 2445578999997543 3566666655445666665554 4
Q ss_pred chhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 201 NKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 201 ~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
...+... ......+++..++.++....+...+-..+.. -..+....|++.++|.+.-+.
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3433332 2334689999999999999988876333221 224567889999999886543
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.5e-05 Score=82.08 Aligned_cols=191 Identities=16% Similarity=0.085 Sum_probs=107.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-----ccceEEeeeccchhc-CCCC
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-----FEGTCFLENVRVESQ-RPGG 132 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~-~~~~ 132 (689)
|.....++|.+..++.+.+++..+. -..++.++|+.|+||||+|+.++..+... .++..- .++..... .+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCc
Confidence 3345678999999999999996332 34567789999999999999999875310 011000 00000000 0000
Q ss_pred hHHHHHHHHHHhcC-CCCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeec-cchh
Q 048627 133 LAWLRQKLLLNLLK-DENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-RNKQ 203 (689)
Q Consensus 133 ~~~l~~~~l~~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTt-R~~~ 203 (689)
+.. +.. .....+.+..+.+.. .+++-++|+|+++.. .....++..+....+...+|++| +...
T Consensus 90 ~~e--------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 90 LIE--------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred EEE--------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 000 000 000001111222221 255679999999754 33556666655444455555544 4333
Q ss_pred hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 204 VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 204 ~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
+... ......+++.+++.++....+...+-..+. ....+.+..+++.++|.+..+.
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3322 233468999999999999888876533222 1224567788899999876443
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=86.32 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=111.5
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---------------------cce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---------------------EGT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~ 117 (689)
|.....++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... ..+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344567899999999999988532 2246788999999999999999998853210 011
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~i 195 (689)
+++.. ... ..+..+ +.+...+.. .-..+++-++|||+++.. .....|+..+........+
T Consensus 91 ~eId~----a~~-~~Id~i-R~L~~~~~~------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 91 VEIDG----ASN-RGIDDA-KRLKEAIGY------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred EEEec----ccc-cCHHHH-HHHHHHHHh------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 11110 000 111111 111111110 012355678999999764 3456666665433445556
Q ss_pred Eeeccc-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc-hhHHHhhhhh
Q 048627 196 IITTRN-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP-LALKVLGCFL 267 (689)
Q Consensus 196 liTtR~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 267 (689)
|++|.+ ..+... ......+++.+++.++....+...+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665544 333322 233467899999999999988876533221 122456788899999865 5666655433
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.1e-05 Score=85.67 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=106.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--ccceEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD--FEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
|.....+||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .....|....... .+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHH
Confidence 345567999999999999988532 224568899999999999999999885321 1100011000000 000000
Q ss_pred HHHHHHH-------hcC-CCCCCcchHHHHHhh-----cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeec-c
Q 048627 137 RQKLLLN-------LLK-DENVIPDIDLNFRRL-----SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-R 200 (689)
Q Consensus 137 ~~~~l~~-------~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTt-R 200 (689)
.+.+... +.+ .....+.+..+.+.+ .+++-++|+|+++... ....|+..+....+.+.+|++| +
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0000000 000 000001111122222 2445578999997653 3566666655444455555444 4
Q ss_pred chhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 201 NKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 201 ~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
...+... ......+++.+++.++....+...+...+. .-..+.+..+++.++|...
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 3444332 344578999999999998888776532221 1224567889999999665
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=87.93 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=109.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
|...+.+||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-.-. .+.-...+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~---------c~~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP---------CGTCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------CccCHHHH
Confidence 3455679999999999999886332 2456789999999999999999988632110000000 00000000
Q ss_pred HHHHHhcC-----C---CCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccc-h
Q 048627 139 KLLLNLLK-----D---ENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-K 202 (689)
Q Consensus 139 ~~l~~~~~-----~---~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~-~ 202 (689)
.+...... . ....+.+..+.+.+ .+++-++|||+++.. .....|+..+....+.+.+|+++.+ .
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 11000000 0 00001111111111 245668999999754 4466666665544456666665543 3
Q ss_pred hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 203 QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 203 ~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
.+... ......+.+..++.++....+...+...+.. -..+.+..+++.++|.+..+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 33322 2234578899999999998888776433221 1245678899999998875443
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=3e-05 Score=87.33 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=107.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--cc---------------------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD--FE--------------------- 115 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~--------------------- 115 (689)
|.....+||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. ..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3445679999999999999996322 23567899999999999999999886311 00
Q ss_pred ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCc
Q 048627 116 GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVS 193 (689)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~ 193 (689)
.++++. . ... ..+..+. ++...+. ..-..++.-++|||+++... ....|+..+......+
T Consensus 90 dv~eid---a-as~-~~Vd~iR-~l~~~~~------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 90 DVTEID---A-ASH-GGVDDAR-ELRERAF------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred cEEEec---c-ccc-CCHHHHH-HHHHHHH------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 011111 0 000 1111111 1111110 00123455678899997653 3556666665545566
Q ss_pred eEEeecc-chhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 194 RIIITTR-NKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 194 ~iliTtR-~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.+|++|. ...+... ......|++..++.++..+++.+.+-..+.. ...+....|++.++|.+..
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 6665554 3344433 3345789999999999998887765222221 1244567889999998853
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=1.2e-05 Score=84.80 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~ 163 (689)
...+.|+|++|+|||+||+.+++.+...++ .++|+.. ..+...+...+... ....+.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-----------~~f~~~~~~~~~~~-----~~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----------EKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-----------HHHHHHHHHHHhcc-----cHHHHHHHHHh
Confidence 345899999999999999999999765543 3455441 22333333333221 22334444433
Q ss_pred CcEEEEEcCCCCh---HH-HHHHhcCCCC-CCCCceEEeecc-chhhh--------hhcCcceEEEcCCCCHHHHHHHHH
Q 048627 164 IKILIVFDDVTCF---TQ-LESLIGSLDW-LTPVSRIIITTR-NKQVL--------RNWEVRKIYEVEALEYHHALELFS 229 (689)
Q Consensus 164 ~~~LlVlDdv~~~---~~-~~~l~~~l~~-~~~g~~iliTtR-~~~~~--------~~~~~~~~~~l~~L~~~~~~~lf~ 229 (689)
..-+|++||++.. .. -+.+...+.. ...|..||+||. .+.-. ..+.....+++++.+.+....++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4558999999642 11 1222222111 123456888874 33221 122334578999999999999998
Q ss_pred HhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 230 RHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
+.+..... .-.+++...|++.+.|....+.
T Consensus 274 ~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 274 KMLEIEHG--ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhcCC--CCCHHHHHHHHhccccCHHHHH
Confidence 88643221 1225677888888887765544
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.31 E-value=1.6e-05 Score=83.90 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=98.8
Q ss_pred cccchhhH--HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHHHHHH
Q 048627 65 LVGVESTV--EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 65 ~vGr~~~~--~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
++|.+... .....+..........+.|+|++|+|||+|++.+++.+..... .++|+.. ..+...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-----------~~~~~~~ 181 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-----------EKFTNDF 181 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-----------HHHHHHH
Confidence 45766542 2233333221122346889999999999999999999765532 3445441 1222333
Q ss_pred HHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccc-hhhh--------h
Q 048627 141 LLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRN-KQVL--------R 206 (689)
Q Consensus 141 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~-~~~~--------~ 206 (689)
...+... ....+.+.+.+ .-+|||||++... ..+.+...+.. ...+..+|+|+.. +... .
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S 255 (405)
T TIGR00362 182 VNALRNN-----KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS 255 (405)
T ss_pred HHHHHcC-----CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh
Confidence 3333221 23334444433 2378899996421 11222222211 1234567787753 2211 1
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
.+.....+.+.+.+.++...++...+..... .-.++....|++.+.|....+.
T Consensus 256 Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 256 RFEWGLVVDIEPPDLETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 2233357899999999999999888743222 1225667778888887766543
No 115
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.29 E-value=3.2e-06 Score=81.86 Aligned_cols=175 Identities=18% Similarity=0.266 Sum_probs=103.5
Q ss_pred CCCCcccchhhHHH---HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 61 NKNQLVGVESTVEE---IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 61 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
.-+++||.+..+.+ |.+++ +.+..+.+.+||++|+||||||+.++..-+.+- ..|+.. ........+++.+.
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel-SAt~a~t~dvR~if 210 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL-SATNAKTNDVRDIF 210 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE-eccccchHHHHHHH
Confidence 33456666654433 33444 355677888999999999999999998765442 334442 22222224444444
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC--ChHHHHHHhcCCCCCCCCceEEe--eccchhhh---hhcCc
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT--CFTQLESLIGSLDWLTPVSRIII--TTRNKQVL---RNWEV 210 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~g~~ili--TtR~~~~~---~~~~~ 210 (689)
++.-. ...+..+|.+|.+|+|. +..|-+.+++.. ..|.-++| ||.++... ..+..
T Consensus 211 e~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 211 EQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhc
Confidence 33221 13355788999999995 344555555543 35554444 66665331 22344
Q ss_pred ceEEEcCCCCHHHHHHHHHHhcc---CCCC-----CC---hhHHHHHHHHHHHhCCCch
Q 048627 211 RKIYEVEALEYHHALELFSRHAF---KRNH-----PD---VGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 211 ~~~~~l~~L~~~~~~~lf~~~~~---~~~~-----~~---~~~~~~~~~i~~~~~g~Pl 258 (689)
..++-|++|..++...++.+..- .... +. .....+.+-++..|.|-..
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 56899999999999998887321 1111 11 1223356667777777654
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.29 E-value=1.4e-05 Score=85.32 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=100.9
Q ss_pred cccchhh--HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHHHHHH
Q 048627 65 LVGVEST--VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 65 ~vGr~~~--~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
++|.... .....++..........+.|+|++|+|||+|++.+++.+...+. .++|+.. ..+...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-----------~~~~~~~ 193 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-----------EKFTNDF 193 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-----------HHHHHHH
Confidence 4565543 23333333222223356889999999999999999999876643 2344441 1222333
Q ss_pred HHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccch-h--------hhh
Q 048627 141 LLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNK-Q--------VLR 206 (689)
Q Consensus 141 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~~-~--------~~~ 206 (689)
...+.. .....+.+.+.. .-+|||||++... ..+.+...+.. ...|..|++|+... . +..
T Consensus 194 ~~~~~~-----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S 267 (450)
T PRK00149 194 VNALRN-----NTMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS 267 (450)
T ss_pred HHHHHc-----CcHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 333321 122334444443 3478899995421 12222221111 12345577777643 1 122
Q ss_pred hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 207 NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 207 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
.+.....+++.+.+.++...++...+-.... .-.+++...|++.+.|....+.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHH
Confidence 2344468999999999999999888743221 2235668888888888776543
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.29 E-value=9.3e-06 Score=82.88 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=87.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
|.....++|.+...+.+..++.. ..-+.++.++|++|+||||+|+.+++..... ..++... .. . ...+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~----~~-~-~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGS----DC-R-IDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccC----cc-c-HHHHHH
Confidence 44556899999999999999863 2235677779999999999999999876432 2233211 11 1 221111
Q ss_pred HHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh---HHHHHHhcCCCCCCCCceEEeeccchhhh-hh-cCcceE
Q 048627 139 KLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKI 213 (689)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~g~~iliTtR~~~~~-~~-~~~~~~ 213 (689)
.+ ...... ....+.+-++|+||++.. .....+...+.....++++|+||...... +. ......
T Consensus 87 ~l-~~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 87 RL-TRFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HH-HHHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 11 111100 001134557889999754 22233333333345677888888654321 11 122346
Q ss_pred EEcCCCCHHHHHHHHHH
Q 048627 214 YEVEALEYHHALELFSR 230 (689)
Q Consensus 214 ~~l~~L~~~~~~~lf~~ 230 (689)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777888887766554
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.3e-05 Score=87.59 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=106.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-cccc---eEEeeeccchhcCCCChH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-DFEG---TCFLENVRVESQRPGGLA 134 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~---~~~~~~~~~~~~~~~~~~ 134 (689)
|.....++|.+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.++..+-. +... .|-.| ........++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C--~~~~~~~~Dvi 90 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC--IENVNNSLDII 90 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH--HHhhcCCCcEE
Confidence 445567899999999999999632 23566789999999999999999987522 1100 00000 00000000000
Q ss_pred HHHHHHHHHhcC-CCCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEE-eeccchhhh
Q 048627 135 WLRQKLLLNLLK-DENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRII-ITTRNKQVL 205 (689)
Q Consensus 135 ~l~~~~l~~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~il-iTtR~~~~~ 205 (689)
. +.+ .....+.+..+.+.+ .+++-++|+|+++.. ..+.+|+..+......+.+| +|++...+.
T Consensus 91 e--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 E--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred E--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 000 000001111222211 256668899999754 34666666655434455544 454444444
Q ss_pred hh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 206 RN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 206 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.. ......+++.+++.++....+...+-..+. ....+.+..+++.++|.+.-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRD 215 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 32 334468999999999999888775532221 11244577899999987753
No 119
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.28 E-value=2.6e-05 Score=85.87 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=40.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|...+.++|++..+..+.+.+. ......+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4455679999999998887774 2345679999999999999999998765
No 120
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.3e-08 Score=95.32 Aligned_cols=176 Identities=22% Similarity=0.235 Sum_probs=121.3
Q ss_pred CCceeeecCCCCcc--ccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCc--cCCCCCC
Q 048627 477 EKLVFLEVPDNNIE--QLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPS--EIFNLEF 552 (689)
Q Consensus 477 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~ 552 (689)
..|++||++++.|+ ++-..++.+++|+.|.+.+.. -.-|....+.+-.+|+.|+|+.|+..++... -+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~---LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR---LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc---cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 35888888888775 454557778888888877643 2233334567778899999999886655332 2457889
Q ss_pred CCEEeccCCCCCCCCC----CCCcCCCcEEEcccccc----cccCcccccCCCCCEEecCCCCCCC-CCCcccCCCCCcc
Q 048627 553 LTKLDLSGCSKLKRLP----EISSGNISWLLLRGSAI----EELPSSIERQLRLSWLDLTDCKMFK-SLPSSLCKLKSLG 623 (689)
Q Consensus 553 L~~L~l~~~~~l~~~p----~~~~~~L~~L~l~~~~l----~~l~~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~ 623 (689)
|..|++++|......- -....+|+.|+++++.- ..+..-...+++|..||+++|..+. .....+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 9999999998654321 11236788888887632 2343445678999999999986433 2223466788999
Q ss_pred EEEeecCCCCCc-cCcccCCCCCCCEEEccCCC
Q 048627 624 VLDLHGCSNLRR-LPECLGQLSSPILLNLAETN 655 (689)
Q Consensus 624 ~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~ 655 (689)
+|.++.|..+.. ..-.+...++|..|++.+|-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999999986531 11245778899999998874
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.27 E-value=2.1e-05 Score=89.12 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=85.7
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhc---CCC
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQ---RPG 131 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~---~~~ 131 (689)
.-+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++++.... ...+|..+...... ...
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g 257 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRG 257 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccc
Confidence 3457999999999999988533 334567999999999999999999864321 22333322111100 000
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhh-cCCcEEEEEcCCCChH-----------HHHHHhcCCCCCCCCceEEeec
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRL-SRIKILIVFDDVTCFT-----------QLESLIGSLDWLTPVSRIIITT 199 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~g~~iliTt 199 (689)
.+.. .+..+.+.+ ..++.+|++|+++... ....+.+.+. ...-++|-+|
T Consensus 258 ~~e~-----------------~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaT 318 (731)
T TIGR02639 258 DFEE-----------------RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGST 318 (731)
T ss_pred hHHH-----------------HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEec
Confidence 1111 111122222 2457899999996321 1223333332 1123445444
Q ss_pred cchhhh-------hhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 200 RNKQVL-------RNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 200 R~~~~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
...+.. ......+.+.+++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432211 111233579999999999999988554
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.27 E-value=1.8e-05 Score=90.28 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=98.5
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc------ceEEeeeccchhc---CCC
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE------GTCFLENVRVESQ---RPG 131 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~---~~~ 131 (689)
.-+.+|||+.++.++.+.|... ...-+.++|++|+||||+|..+++++..... ..+|..+...... ...
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~g 262 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKG 262 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccch
Confidence 4457999999999999988532 2345669999999999999999998754321 2233222211110 001
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------HHH---HHhcCCCCCCCCceEEeeccc
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------QLE---SLIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~g~~iliTtR~ 201 (689)
.+..-+++++..+. + .+.+.+|++|+++... +.+ .|.+.+. ...-++|-||..
T Consensus 263 e~e~~lk~ii~e~~-------------~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~ 325 (852)
T TIGR03345 263 EFENRLKSVIDEVK-------------A--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTW 325 (852)
T ss_pred HHHHHHHHHHHHHH-------------h--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCH
Confidence 11122222222111 0 2468999999985431 111 2333322 123456666554
Q ss_pred hhhhh-------hcCcceEEEcCCCCHHHHHHHHHHhccC--CCCCChhHHHHHHHHHHHhCCCc
Q 048627 202 KQVLR-------NWEVRKIYEVEALEYHHALELFSRHAFK--RNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 202 ~~~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
++..+ .....+.+.+++++.+++.+++....-. ......-..+....+++.+.+..
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 32211 1233468999999999999997544311 11111122445666777776544
No 123
>PRK06620 hypothetical protein; Validated
Probab=98.26 E-value=8.5e-06 Score=77.06 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=87.0
Q ss_pred CCcccchhh--HHHHHHhhcCCCCCe--eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 63 NQLVGVEST--VEEIESLLGVESKDV--WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 63 ~~~vGr~~~--~~~l~~~l~~~~~~~--~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
+.++|-... ...+.++-......+ +.+.|+|++|+|||+|++.+++.... .++.. . . .. .
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~---~--~--~~----~ 80 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD---I--F--FN----E 80 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcch---h--h--hc----h
Confidence 345666333 344444432111122 56899999999999999987765431 22220 0 0 00 0
Q ss_pred HHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH--HHHHhcCCCCCCCCceEEeeccchh-------hhhhcC
Q 048627 139 KLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ--LESLIGSLDWLTPVSRIIITTRNKQ-------VLRNWE 209 (689)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~~iliTtR~~~-------~~~~~~ 209 (689)
+..+ ..-++++||++..++ +-.+...+. ..|..+|+|++.+. ....+.
T Consensus 81 --------------------~~~~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~ 137 (214)
T PRK06620 81 --------------------EILE-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred --------------------hHHh-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHh
Confidence 0011 223678899975432 222222222 34668899987442 122234
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 210 VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 210 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
...++++++++.++...++.+.+...+- .-.+++.+-|++.+.|.-..+
T Consensus 138 ~gl~~~l~~pd~~~~~~~l~k~~~~~~l--~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSISSV--TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCceEeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 4458999999999988888777632211 122556677777776655443
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=3.4e-05 Score=82.12 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=109.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-ccccc--eEEee--------------
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GDFEG--TCFLE-------------- 121 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~--~~~~~-------------- 121 (689)
|...+.+||-+...+.+...+..+ .-..++.++|+.|+||||+|+.+++.+- ..... .|..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 345567999999999999998533 2345678999999999999999998852 11110 01000
Q ss_pred -eccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEee
Q 048627 122 -NVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIIT 198 (689)
Q Consensus 122 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliT 198 (689)
... .... .++..+...+ ...... -..+++-++|+|+++... ...+|+..+....+.+++|++
T Consensus 89 ~eld-aas~-~gId~IReli-e~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 89 IEMD-AASN-RGIDDIRELI-EQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred EEec-cccc-cCHHHHHHHH-HHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 000 0000 1222222111 111000 011455688999997643 355666665544556776666
Q ss_pred ccch-hhhh-hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 199 TRNK-QVLR-NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 199 tR~~-~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
|.+. .+.. .......+++.+++.++....+...+...+.. ...+.+..|++.++|.+.-+.
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 6553 2221 12334689999999999999887766333321 124567889999999886443
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.6e-05 Score=82.50 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=106.2
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---c-ceEEee-eccchhc-----
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---E-GTCFLE-NVRVESQ----- 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---~-~~~~~~-~~~~~~~----- 128 (689)
|...+.++|.+..++.+.+++..+ .-...+.++|+.|+||||+|+.+++.+...- + ..+-.+ +......
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 345568999999999999999532 2246688999999999999999998853210 0 000000 0000000
Q ss_pred -------CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeec
Q 048627 129 -------RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT 199 (689)
Q Consensus 129 -------~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTt 199 (689)
...++..+. ++...+.- ....+.+-++|+|+++.. .....|+..+......+.+|++|
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~~------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVLF------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHHh------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 001111111 11111100 001245668899999754 33555666555444566666655
Q ss_pred cc-hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 200 RN-KQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 200 R~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
.. ..+... ......+++.++++++....+...+-..+. .-..+.+..+++.++|.+.
T Consensus 159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLR 217 (451)
T ss_pred CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 33 333222 233468999999999999888776532221 1224567889999999765
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=0.00011 Score=79.50 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=109.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-----ccceEEeeeccchhcC-CCC
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-----FEGTCFLENVRVESQR-PGG 132 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~-~~~ 132 (689)
|.....++|-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +++.. ....+..... ..+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC
Confidence 445567999999999999999633 234568899999999999999999885321 11000 0000000000 000
Q ss_pred hHHHHHHHHHHhcCCC-CCCcchHHHHHh-----hcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccc-hh
Q 048627 133 LAWLRQKLLLNLLKDE-NVIPDIDLNFRR-----LSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN-KQ 203 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~-~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~-~~ 203 (689)
+.. +.+.. ...+.+..+.+. ..+++-++|+|+++... ....|+..+....+.+.+|++|.+ ..
T Consensus 90 v~~--------idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 90 VIE--------IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred eEE--------ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 000 00000 000111111111 13556689999997543 466777776654556666665543 33
Q ss_pred hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 204 VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 204 ~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
+... ......+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+..+
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3322 2334678999999999998888776333322 22456778899999988644
No 127
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=9.5e-07 Score=65.05 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=15.3
Q ss_pred cCCCCCCCEEEccCCCCccccc-hhhccCCCcEEecCCC
Q 048627 640 LGQLSSPILLNLAETNIERIPK-SIIQLFMLRYLLLNCS 677 (689)
Q Consensus 640 l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~ 677 (689)
+..+++|+.|++++|.++.++. .+.++++|+.|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3334444444444444443332 2334444444444444
No 128
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1e-06 Score=64.84 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=52.3
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 596 LRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 596 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
++|++|++++|.+..--+..+..+++|++|++++|.....-|..+..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999987544446889999999999999887766667899999999999999975
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.18 E-value=5.7e-05 Score=86.51 Aligned_cols=153 Identities=11% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcC---CC
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQR---PG 131 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~---~~ 131 (689)
.-+.++||+.++.++.+.|... ....+.++|++|+|||++|..++.++.... ...+|..+....... ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g 253 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 253 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhh
Confidence 3456999999999999999532 334566999999999999999999875421 123332222111000 01
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---------HHHH-HhcCCCCCCCCceEEeeccc
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---------QLES-LIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~-l~~~l~~~~~g~~iliTtR~ 201 (689)
.+..-++.++..+. -.+.+.+|++|+++... +... +.+.+. ...-++|-+|..
T Consensus 254 ~~e~~lk~~~~~~~---------------~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~ 316 (857)
T PRK10865 254 EFEERLKGVLNDLA---------------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTL 316 (857)
T ss_pred hhHHHHHHHHHHHH---------------HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCC
Confidence 11111111111110 12568999999996432 1222 333322 123345545444
Q ss_pred hhhh-------hhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 202 KQVL-------RNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 202 ~~~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
++.. ......+.+.+...+.++...++....
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3321 111223467788889999999886543
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.6e-07 Score=99.41 Aligned_cols=212 Identities=24% Similarity=0.231 Sum_probs=119.2
Q ss_pred ceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEec
Q 048627 456 EVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNL 534 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 534 (689)
.+..+.+..+.+..+-... .+.+|..|++.+|.|..+...+..+.+|++|+++++. +.....+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-----I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-----ITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-----cccccchhhccchhhhee
Confidence 3444444455444433323 5677888888888888776656777788888877743 233445666677788888
Q ss_pred cCCCCCcccCccCCCCCCCCEEeccCCCCCCCCC--CCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCC
Q 048627 535 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP--EISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSL 612 (689)
Q Consensus 535 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p--~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~l 612 (689)
.+|. +..++. +..+++|+.+++++|.....-+ ......++.+++.+|.+..+. ++..+..+..+++..|.+...-
T Consensus 148 ~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCc-chhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence 7777 333332 4457777777777766433222 133355666677776665442 2334444555566666552211
Q ss_pred CcccCCCCC--ccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCC
Q 048627 613 PSSLCKLKS--LGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 613 p~~~~~l~~--L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
++..+.. |+.+++++|... ..+..+..+..+..|++.+|.+..+. .+...+.+..+....+++
T Consensus 225 --~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 225 --GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKL 289 (414)
T ss_pred --CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchh
Confidence 1222333 777777775443 23244555677777777777655332 122333444444444443
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=5.2e-05 Score=79.93 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=86.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
.-+.|+|++|+|||+|++.+++.+......++|+.. ..+...+...+.. .....++..... .-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-----------~~f~~~~~~~l~~-----~~~~~f~~~~~~-~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-----------ELFTEHLVSAIRS-----GEMQRFRQFYRN-VD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-----------HHHHHHHHHHHhc-----chHHHHHHHccc-CC
Confidence 457899999999999999999997655445556551 1222333333321 122334444433 34
Q ss_pred EEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccc-hhh--------hhhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 167 LIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRN-KQV--------LRNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 167 LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~-~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
+|++||+.... ..+.+...+.. ...|..||+||.. +.. ...+.....+++.+++.++...++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 78889985421 11222222110 1235678888754 221 2223344689999999999999998876
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 233 FKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
-..+. .-.+++..-|+..+.+.-
T Consensus 285 ~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 285 EALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHcCC--CCCHHHHHHHHHhcCCCH
Confidence 33221 112445555666665543
No 132
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.17 E-value=3.4e-05 Score=79.92 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=97.8
Q ss_pred CCCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC
Q 048627 61 NKNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR 129 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 129 (689)
....+.|.+..+++|.+.+.. +-..++.|.++|++|+|||++|+.+++.....|- .+.. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~~-s----- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVVG-S----- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEeh-H-----
Confidence 334688999998888876531 1134678999999999999999999998654431 1110 0
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------H---HHHHHhcCCCCC--CC
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------T---QLESLIGSLDWL--TP 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~~--~~ 191 (689)
.+.... .+. ......+.+.......+.+|+||+++.. . .+..++..+... ..
T Consensus 214 -----~l~~k~----~ge-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 -----EFVQKY----LGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred -----HHHHHh----cch-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000000 000 0000111122223457789999998532 0 122333322211 23
Q ss_pred CceEEeeccchhhhhh--c---CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCchh
Q 048627 192 VSRIIITTRNKQVLRN--W---EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 192 g~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+..||.||...+.... . .....+.++..+.++..++|..+...... .+. ...++++.+.|..-|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sga 353 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISAA 353 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCHH
Confidence 5567777765533221 1 23467899999999998888876532221 111 245566667665543
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.17 E-value=8.2e-05 Score=85.62 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=84.6
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchh-cC--CC
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVES-QR--PG 131 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~-~~--~~ 131 (689)
.-+.++||+.++.++.+.|... ....+.++|++|+|||++|..++.++...+ ...+|..+..... .. ..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g 248 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG 248 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh
Confidence 3456999999999999998533 334556899999999999999999875432 1223322211110 00 00
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhh--cCCcEEEEEcCCCChH---------HHHHHhcCCCCCCCCceEEeecc
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRL--SRIKILIVFDDVTCFT---------QLESLIGSLDWLTPVSRIIITTR 200 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g~~iliTtR 200 (689)
.+. ..+..+...+ .+++.+|++|+++... +...++.+... ...-++|-+|.
T Consensus 249 ~~e-----------------~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt 310 (852)
T TIGR03346 249 EFE-----------------ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATT 310 (852)
T ss_pred hHH-----------------HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCc
Confidence 111 1111122222 2468999999996432 12222222211 11234454444
Q ss_pred chhhhh-------hcCcceEEEcCCCCHHHHHHHHHHh
Q 048627 201 NKQVLR-------NWEVRKIYEVEALEYHHALELFSRH 231 (689)
Q Consensus 201 ~~~~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~ 231 (689)
.+.... .....+.+.++..+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 332211 1123357889999999999988755
No 134
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=5.7e-05 Score=81.02 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=90.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
..+.|+|..|+|||.|+..+++.+...+ ..++|+. ...+...+...+... ....+++.+..-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYREM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhcC
Confidence 3488999999999999999999876533 2345544 122333333333221 223344444432
Q ss_pred cEEEEEcCCCCh---HHH-HHHhcCCCC-CCCCceEEeeccch---------hhhhhcCcceEEEcCCCCHHHHHHHHHH
Q 048627 165 KILIVFDDVTCF---TQL-ESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWEVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 165 ~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
=+|||||++.. ..+ +.+...+.. ...|..|||||+.. .+...+...-++++...+.+....++.+
T Consensus 379 -DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 -DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred -CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 47888999532 111 222222211 13356688888753 1222344556899999999999999988
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 231 HAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
++..... .-.++++.-|++.+.+..-.+
T Consensus 458 ka~~r~l--~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 458 KAVQEQL--NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhcCC--CCCHHHHHHHHHhccCCHHHH
Confidence 8743322 122556667777766654443
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.0001 Score=80.31 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=106.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-cce--EEee-eccchhc-CCCCh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-EGT--CFLE-NVRVESQ-RPGGL 133 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~--~~~~-~~~~~~~-~~~~~ 133 (689)
|...+.++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..- ... |-.+ .+..... ...++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 4456789999999999999996432 346677899999999999999998753110 000 0000 0000000 00000
Q ss_pred HHHHHHHHHHhcCC-CCCCcchHHHHHh-----hcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEe-eccchhh
Q 048627 134 AWLRQKLLLNLLKD-ENVIPDIDLNFRR-----LSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIII-TTRNKQV 204 (689)
Q Consensus 134 ~~l~~~~l~~~~~~-~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~ili-TtR~~~~ 204 (689)
..+ ... ....+.+..+.+. ..++.-++|+|+++.. .....|+..+........+|+ ||....+
T Consensus 91 ~ei--------daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 91 IEI--------DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred EEe--------eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 000 000 0000111122222 1345668899999864 346666665543334444454 4444333
Q ss_pred hhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 205 LRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 205 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
... ......+++.+++.++....+...+-..+.. -..+.+..|++.++|.+..
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 322 2334678899999999998887766332221 1245577888888887764
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=8.4e-05 Score=81.49 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=106.2
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEeeeccchhcCCCChHHHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
.....++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-.. ...... .. .+.-...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~-~~--------Cg~C~~C~ 82 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP-EP--------CGKCELCR 82 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC-CC--------CcccHHHH
Confidence 445678999999999999986432 24578899999999999999999985321 110000 00 00000000
Q ss_pred HHHHHhc-----CCCCCCcchHHHHH---hh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccc-h
Q 048627 139 KLLLNLL-----KDENVIPDIDLNFR---RL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-K 202 (689)
Q Consensus 139 ~~l~~~~-----~~~~~~~~~~~l~~---~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~-~ 202 (689)
.+..... ........++.+++ .+ .+++-++|||+++.. .....|+..+......+.+|++|.+ .
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 0000000 00000111111111 11 245568899999864 3466666665543444555544443 3
Q ss_pred hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 203 QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 203 ~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
.+... ......+++..++.++....+.+.+...+.. ...+.+..+++.++|.+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33332 2334678889999999888877765322211 113457889999999886443
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.13 E-value=2.4e-05 Score=81.61 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=96.1
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-C
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-P 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 130 (689)
..+.|.+.+++++.+.+.. +-..++.|.++|++|+|||++|+.+++.....|- .+.. ...... .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-seL~~k~~ 258 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SELIQKYL 258 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-chhhhhhc
Confidence 4567999999998887631 1123567889999999999999999998765541 1110 000000 0
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----------------HHHHHhcCCCCC--CCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----------------QLESLIGSLDWL--TPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~g 192 (689)
..-....+. .+.......+.+|+||+++... .+..++..+..+ ..+
T Consensus 259 Ge~~~~vr~----------------lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 259 GDGPKLVRE----------------LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred chHHHHHHH----------------HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 000111111 1112223567888999874210 122222222211 235
Q ss_pred ceEEeeccchhhhhh-c----CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCch
Q 048627 193 SRIIITTRNKQVLRN-W----EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 193 ~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 258 (689)
..||.||...+.... + .....+.++..+.++..++|..++..-.. .... ...++..+.|.--
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~sg 390 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELSG 390 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCCH
Confidence 677777775543322 1 23467999999999999999877633221 1112 3455556665543
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00013 Score=73.29 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=108.9
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-cc--------------ccceEEeeeccchh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GD--------------FEGTCFLENVRVES 127 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~--------------f~~~~~~~~~~~~~ 127 (689)
..++|.+...+.+.+.+..+ .-++...++|+.|+||+++|..+++.+- .. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46899999999999998532 2257899999999999999999998842 21 23334433110000
Q ss_pred cCCCChHHHHHHHHHHhc--CCC---CCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 128 QRPGGLAWLRQKLLLNLL--KDE---NVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 128 ~~~~~~~~l~~~~l~~~~--~~~---~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
.. . +-.......+ ... ...+.+..+.+.+. +++-++|+|+++... ...+|+..+.... .+.+
T Consensus 83 g~--~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 GK--L---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cc--c---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00 0 0000011111 000 11123334444433 556788999997643 3455555543333 3444
Q ss_pred -Eeeccchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 196 -IITTRNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 196 -liTtR~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
++|+....+.+. ......+++.+++.++..+.+........ .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence 455554444443 34457899999999999999987642111 011136788999999975544
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.12 E-value=3.5e-05 Score=76.52 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=69.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
.+.++|++|+|||++|+.++..+.... ....|+.. ....+ .....+.. . .....+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v---------~~~~l----~~~~~g~~-~-~~~~~~~~~a--~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV---------TRDDL----VGQYIGHT-A-PKTKEILKRA--MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe---------cHHHH----hHhhcccc-h-HHHHHHHHHc--cC
Confidence 688999999999999999888764321 11123221 01111 11111111 0 1111111111 23
Q ss_pred EEEEEcCCCCh-----------HHHHHHhcCCCCCCCCceEEeeccchhhhhh--c------CcceEEEcCCCCHHHHHH
Q 048627 166 ILIVFDDVTCF-----------TQLESLIGSLDWLTPVSRIIITTRNKQVLRN--W------EVRKIYEVEALEYHHALE 226 (689)
Q Consensus 166 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~--~------~~~~~~~l~~L~~~~~~~ 226 (689)
-+|+||++... +..+.+...+.....+.+||+++........ . .....+++++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58889999632 2234455544434455667776654322111 1 123579999999999999
Q ss_pred HHHHhc
Q 048627 227 LFSRHA 232 (689)
Q Consensus 227 lf~~~~ 232 (689)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988876
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00018 Score=78.90 Aligned_cols=178 Identities=16% Similarity=0.212 Sum_probs=107.3
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-----------------------ccc
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-----------------------FEG 116 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----------------------f~~ 116 (689)
...+.++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.++..+-.. |+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 44567999999999999999532 224568899999999999999998875311 111
Q ss_pred eEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCce
Q 048627 117 TCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSR 194 (689)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~ 194 (689)
. .+. .... ..+..+. .+..++.... ..+++-++|+|+++... ....|+..+......+.
T Consensus 93 ~-~ld----~~~~-~~vd~Ir-~li~~~~~~P------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 93 H-ELD----AASN-NSVDDIR-NLIEQVRIPP------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred E-Eec----cccc-CCHHHHH-HHHHHHhhCc------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 111 0000 1122211 1111111100 12345588999997643 46666666554445566
Q ss_pred EEe-eccchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 195 III-TTRNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 195 ili-TtR~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+|+ |++...+... ......+++.+++.++....+...+-..+.. ...+.+..|++.++|...-
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 555 4444444433 3345689999999999999888765333221 1244678899999987653
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=7.5e-06 Score=83.08 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=95.6
Q ss_pred CCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccc-cccccCcccccCCCCCEEec
Q 048627 525 RLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGS-AIEELPSSIERQLRLSWLDL 603 (689)
Q Consensus 525 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~-~l~~l~~~i~~l~~L~~L~l 603 (689)
.+.+++.|++++|. +..+|. ...+|++|.+++|..++.+|.....+|+.|++++| .+..+|. +|+.|++
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEe
Confidence 35789999999984 778883 34579999999999999999877789999999988 7777775 4667777
Q ss_pred CCCCC--CCCCCcccCCCCCccEEEeecCCCC--CccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCC
Q 048627 604 TDCKM--FKSLPSSLCKLKSLGVLDLHGCSNL--RRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSE 678 (689)
Q Consensus 604 ~~~~~--~~~lp~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 678 (689)
..+.. .+.+|. +|+.|.+.+++.. ..+|.. -.++|+.|++++|....+|..+. .+|+.|.++.|.
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 65443 344554 5677777543311 112211 12579999999998776665443 478889887763
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=2.1e-05 Score=75.00 Aligned_cols=181 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh--ccccceEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS--GDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
|...+.++|.+..+..|.+.+.. ...++...||++|.|||+.|..+++.+- +-|.+.+.-.++.... +..-+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----cccch
Confidence 44566899999999999998863 5677888999999999999999998853 3355544322221111 11100
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhh------cCCc-EEEEEcCCCChH--HHHHHhcCCCCCCCCceEE-eeccchhhhh
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRL------SRIK-ILIVFDDVTCFT--QLESLIGSLDWLTPVSRII-ITTRNKQVLR 206 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l------~~~~-~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~il-iTtR~~~~~~ 206 (689)
...+ .....+.-.. ..++ -.+|||+++... .|.++......+...++++ ||+--..+..
T Consensus 106 r~Ki-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 106 REKI-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhh-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 0000 0000000000 0123 478899998754 4888877776666666654 4443332221
Q ss_pred h-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 207 N-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 207 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
. ...-..+..++|.+++...-+...+-.++.+ -..+..+.|++.++|--.
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLR 225 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHH
Confidence 1 1223568889999988888777776433322 224567888888888543
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=1e-06 Score=93.27 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=87.5
Q ss_pred ceeEEEecCCCCCCCCC-CCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEec
Q 048627 456 EVKYFHWHGYPLKSLPS-NLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNL 534 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 534 (689)
.+..+.+.++.+..+.. .-.+.+|++|++++|.|+.+. .+..+..|+.|++.++. +..+..+..+..|+.+++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-----i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-----ISDISGLESLKSLKLLDL 169 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-----chhccCCccchhhhcccC
Confidence 56666666666666666 336677777777777777653 34455567777777642 233345555777778888
Q ss_pred cCCCCCcccCcc-CCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCC--CCEEecCCCCCCCC
Q 048627 535 RGSKSLKSLPSE-IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLR--LSWLDLTDCKMFKS 611 (689)
Q Consensus 535 ~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~--L~~L~l~~~~~~~~ 611 (689)
++|.... +... +..+.+++.+++.+|.....-.......+..+++..+.+..+-. +..+.. |+.+++++|.+ ..
T Consensus 170 ~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i-~~ 246 (414)
T KOG0531|consen 170 SYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRI-SR 246 (414)
T ss_pred Ccchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcc-cc
Confidence 7777433 3221 35677777777777653322111111222333444444433211 111222 55555555554 22
Q ss_pred CCcccCCCCCccEEEeecC
Q 048627 612 LPSSLCKLKSLGVLDLHGC 630 (689)
Q Consensus 612 lp~~~~~l~~L~~L~l~~~ 630 (689)
.+..+..++.+..|++..+
T Consensus 247 ~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccccccccccccccchhhc
Confidence 2234444555555555543
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00013 Score=73.63 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=89.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc---------------------ccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD---------------------FEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
-+..+.++|+.|+||||+|+.+++.+--. .+...++.... .... -.+.++. ++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~-i~id~iR-~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKT-IKVDQVR-ELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCC-CCHHHHH-HHHHH
Confidence 35678899999999999999999885211 11222221000 0000 1111111 11111
Q ss_pred hcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccch-hhhhh-cCcceEEEcCCC
Q 048627 144 LLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKIYEVEAL 219 (689)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~-~~~~~~~~l~~L 219 (689)
+... -..+++-++|||+++.. .....++..+..-.+++.+|++|.+. .+.+. ......+.+.++
T Consensus 98 ~~~~------------~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 98 VVQT------------AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred Hhhc------------cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 1110 01133445577999764 34555655554444567777777665 34433 334578999999
Q ss_pred CHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 220 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 220 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
+.+++.+.+.... .. . ..+.+..++..++|.|.....+
T Consensus 166 ~~~~~~~~L~~~~-~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 166 SNEESLQWLQQAL-PE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CHHHHHHHHHHhc-cc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999887653 11 1 1334567789999999754443
No 145
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=7.1e-06 Score=82.35 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=59.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC----------cchH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI----------PDID 155 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~~~ 155 (689)
...+|+|++|+||||||+++++.+.. +|+..+|+..+++. +.++..+++++...+.....+. ..++
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998654 79999999865552 1456777777764333222222 1111
Q ss_pred HHHHh-hcCCcEEEEEcCCCChH
Q 048627 156 LNFRR-LSRIKILIVFDDVTCFT 177 (689)
Q Consensus 156 ~l~~~-l~~~~~LlVlDdv~~~~ 177 (689)
..+.. -.+++++|++|++....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHH
Confidence 12222 35899999999996544
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.05 E-value=4.5e-05 Score=87.43 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-c-----cceEEeeeccchhcC---CCCh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-F-----EGTCFLENVRVESQR---PGGL 133 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~---~~~~ 133 (689)
+.++||+++++++.++|... ...-+.++|++|+|||++|..++.++... - ...+|..+....... ...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 46899999999999999632 33456799999999999999999986532 1 133443322111100 0111
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---------HHHHHh-cCCCCCCCCceEEeeccchh
Q 048627 134 AWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---------QLESLI-GSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~l~-~~l~~~~~g~~iliTtR~~~ 203 (689)
..-.+.++ .+.-..++.+|++|+++... ....++ +.+. ...-++|.+|..+.
T Consensus 257 e~rl~~i~----------------~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~e 318 (821)
T CHL00095 257 EERLKRIF----------------DEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDE 318 (821)
T ss_pred HHHHHHHH----------------HHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHH
Confidence 11111111 11123567899999995221 122222 2221 12244555555443
Q ss_pred hhh-------hcCcceEEEcCCCCHHHHHHHHHH
Q 048627 204 VLR-------NWEVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 204 ~~~-------~~~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
... .......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 211 122345788999999998887764
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.9e-05 Score=81.50 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=106.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-ccc--------------------ce
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-DFE--------------------GT 117 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~--------------------~~ 117 (689)
|...+.+||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-. +.. .+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 445668999999999999998533 22456789999999999999999988532 110 01
Q ss_pred EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceE
Q 048627 118 CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRI 195 (689)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~i 195 (689)
+.+.. .+ . ..+..+ +++...+... -..+++-++|+|+++... ....|+..+....+.+.+
T Consensus 91 ~eid~---~s-~-~~v~~i-r~l~~~~~~~------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 91 FEIDG---AS-N-TGVDDI-RELRENVKYL------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred eeeec---cC-c-cCHHHH-HHHHHHHHhc------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 11110 00 0 111111 1111111100 012445578899997643 355666555444455666
Q ss_pred Eeec-cchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHh
Q 048627 196 IITT-RNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVL 263 (689)
Q Consensus 196 liTt-R~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 263 (689)
|++| ....+... ......+++.+++.++....+...+-..+.. -..+....|++.++|... |+..+
T Consensus 153 Il~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 153 IFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 44444432 2334678899999999888877655322211 124567788889988664 44443
No 148
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.00013 Score=73.61 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=102.7
Q ss_pred CCCCcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHH
Q 048627 61 NKNQLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l 136 (689)
.+..++||+.++..+.+++.. +....+.+.|.|.+|.|||.+...++.+...... .++++.+..- ....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-----~~~~ai 222 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-----TEASAI 222 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-----cchHHH
Confidence 567799999999999999862 3445778999999999999999999988654433 3466653221 233344
Q ss_pred HHHHHHHh----cCCCCCCcchHHHHHhhcC--CcEEEEEcCCCChHH--HHHHhcCCCCC-CCCceEEeeccch-----
Q 048627 137 RQKLLLNL----LKDENVIPDIDLNFRRLSR--IKILIVFDDVTCFTQ--LESLIGSLDWL-TPVSRIIITTRNK----- 202 (689)
Q Consensus 137 ~~~~l~~~----~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~l~~~-~~g~~iliTtR~~----- 202 (689)
...+...+ .....+.+....+...... ..+++|+|+++.... -..+...+.|- -+++++|+.--..
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 44444444 3332222334444444443 358999999875332 12222222221 3556654433211
Q ss_pred -hhhhhc-----CcceEEEcCCCCHHHHHHHHHHhcc
Q 048627 203 -QVLRNW-----EVRKIYEVEALEYHHALELFSRHAF 233 (689)
Q Consensus 203 -~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~ 233 (689)
..+..+ -....+..++-+.++..++|..+.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 112221 1235788899999999999998873
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.04 E-value=4.9e-05 Score=80.48 Aligned_cols=158 Identities=16% Similarity=0.301 Sum_probs=89.7
Q ss_pred CCCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-----cceEEeeecc
Q 048627 61 NKNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-----EGTCFLENVR 124 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~ 124 (689)
....+.|.+..++++.+.+.. +-..++-+.++|++|+|||++|+.+++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345678899999998887531 112356789999999999999999999876542 2233433 11
Q ss_pred chh--cC-CCChHHHHHHHHHHhcCCCCCCcchHHHHHh-hcCCcEEEEEcCCCChH---------H-----HHHHhcCC
Q 048627 125 VES--QR-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRR-LSRIKILIVFDDVTCFT---------Q-----LESLIGSL 186 (689)
Q Consensus 125 ~~~--~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~---------~-----~~~l~~~l 186 (689)
... .. ........+.++ ...++. ..+++.+|+||+++... + +..++..+
T Consensus 259 ~~eLl~kyvGete~~ir~iF-------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIF-------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred chhhcccccchHHHHHHHHH-------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 100 00 000011111111 111111 23578999999996321 1 22333333
Q ss_pred CCCC--CCceEEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhc
Q 048627 187 DWLT--PVSRIIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 187 ~~~~--~g~~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.... .+..||.||...+... . . .....++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 3344555664443222 1 1 234579999999999999998886
No 150
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=9.5e-08 Score=100.09 Aligned_cols=128 Identities=25% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCC
Q 048627 526 LNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTD 605 (689)
Q Consensus 526 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~ 605 (689)
..+|.+.+.++|. +..+-.++.-++.|+.|+|++|.....-.-..+++|+.|||++|.++.+|.--..-.+|+.|.+++
T Consensus 163 Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 4567777777666 555556676777788888887653321111112445555555555555544211112255555555
Q ss_pred CCCCCCCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCC
Q 048627 606 CKMFKSLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 606 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l 656 (689)
|-+ ..+ .++.+|++|+.|+++.|-+.+. -...+..+.+|..|+|.+|++
T Consensus 242 N~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 543 222 1344555555555555433221 111233344455555555544
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.00023 Score=70.67 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=70.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc-c-cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD-F-EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~ 163 (689)
...+.++|++|+||||+|+.++..+... + ...-|+. + ....+. ....+.. .......+.. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v-----~~~~l~----~~~~g~~-~~~~~~~l~~-a-- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V-----TRDDLV----GQYIGHT-APKTKEVLKK-A-- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e-----cHHHHH----HHHhccc-hHHHHHHHHH-c--
Confidence 3458899999999999999998875321 1 1111222 1 111111 1111110 0011111222 1
Q ss_pred CcEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCceEEeeccchhhhhh--------cCcceEEEcCCCCHHHH
Q 048627 164 IKILIVFDDVTCF-----------TQLESLIGSLDWLTPVSRIIITTRNKQVLRN--------WEVRKIYEVEALEYHHA 224 (689)
Q Consensus 164 ~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~~~ 224 (689)
..-+|+||+++.. +..+.+...+.....+.+||+++........ -.....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2248899999642 2344444444433445667777654322111 12235799999999999
Q ss_pred HHHHHHhcc
Q 048627 225 LELFSRHAF 233 (689)
Q Consensus 225 ~~lf~~~~~ 233 (689)
.+++...+-
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 999888763
No 152
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.99 E-value=4.4e-05 Score=66.58 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999985
No 153
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.99 E-value=1.6e-05 Score=76.59 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=58.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC----------cch
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI----------PDI 154 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~~ 154 (689)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ..++..+++.+...+.....+. ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356889999999999999999998654 68888888754332 2467777777733332222221 111
Q ss_pred HHHHHh-hcCCcEEEEEcCCCChH
Q 048627 155 DLNFRR-LSRIKILIVFDDVTCFT 177 (689)
Q Consensus 155 ~~l~~~-l~~~~~LlVlDdv~~~~ 177 (689)
.....+ -.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 122222 24899999999996543
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.98 E-value=4.6e-05 Score=74.78 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=57.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
..+.|+|.+|+|||+||..+++.+..+...++|+. ...+...+....... .......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC-
Confidence 45889999999999999999999765544455554 122333333322211 1122333444455444
Q ss_pred EEEEcCCC--ChHHH--HHHhcCCCC-CCCCceEEeeccch
Q 048627 167 LIVFDDVT--CFTQL--ESLIGSLDW-LTPVSRIIITTRNK 202 (689)
Q Consensus 167 LlVlDdv~--~~~~~--~~l~~~l~~-~~~g~~iliTtR~~ 202 (689)
||||||+. ....| +.+...+.. ...+..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999993 22222 222222211 13456788888644
No 155
>CHL00176 ftsH cell division protein; Validated
Probab=97.96 E-value=0.00015 Score=79.71 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=97.5
Q ss_pred CCCcccchhhHHHHHHhhc---C-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 62 KNQLVGVESTVEEIESLLG---V-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~---~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
..+++|.++..+++.+.+. . +...++-|.++|++|+|||++|+.++......| +.+. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~---i~is-~-------- 249 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF---FSIS-G-------- 249 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---eecc-H--------
Confidence 3568898887777666542 1 112256789999999999999999998753221 1111 0
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCC--CCCc
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWL--TPVS 193 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~g~ 193 (689)
..+..... +. ........+.......+.+|+|||++.. ..+..++..+... ..+.
T Consensus 250 --s~f~~~~~----g~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 250 --SEFVEMFV----GV-GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred --HHHHHHhh----hh-hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 00111000 00 0001112233344567889999999532 1133344333222 2345
Q ss_pred eEEeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 194 RIIITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 194 ~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
.||.||...+.... -.....+.++..+.++..+++..++.... .........+++.+.|..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGFS 388 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCC
Confidence 56666655433221 12346789999999999999988874321 111234566777777743
No 156
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00047 Score=64.47 Aligned_cols=195 Identities=18% Similarity=0.167 Sum_probs=107.5
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHh
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNL 144 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 144 (689)
++.-....+.+..+-....++.+++.|+|.-|.|||.+++.+...+-+.-..++++. .+. .....+...+...+
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~-~s~~~~~~ai~~~l 103 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPT-LSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccc-hhHHHHHHHHHHHh
Confidence 344443333333332223456679999999999999999955544432222222322 112 45556667777776
Q ss_pred cCCCCCC--cchHHHHHhh-----cCCc-EEEEEcCCCCh--HHHHHHhc--CC-CCCCCCceEEeeccch-------hh
Q 048627 145 LKDENVI--PDIDLNFRRL-----SRIK-ILIVFDDVTCF--TQLESLIG--SL-DWLTPVSRIIITTRNK-------QV 204 (689)
Q Consensus 145 ~~~~~~~--~~~~~l~~~l-----~~~~-~LlVlDdv~~~--~~~~~l~~--~l-~~~~~g~~iliTtR~~-------~~ 204 (689)
....... .......+.| ++++ +.+++||..+. +.++.+.- .+ .....--+|+..-..+ .+
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHH
Confidence 6633221 1222222222 3666 99999999643 23333321 11 1111112233333221 11
Q ss_pred hhh-cCcceE-EEcCCCCHHHHHHHHHHhccCCCCCChh-HHHHHHHHHHHhCCCchhHHHhhh
Q 048627 205 LRN-WEVRKI-YEVEALEYHHALELFSRHAFKRNHPDVG-YEKLSSNVMKYAQGVPLALKVLGC 265 (689)
Q Consensus 205 ~~~-~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~-~~~~~~~i~~~~~g~Plal~~~~~ 265 (689)
... -..... |++.|++.++...++..+..+...+.+- ..+....|.....|.|.++..++.
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 111 111233 9999999999999998887554433332 245678899999999999887764
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.93 E-value=0.00049 Score=67.84 Aligned_cols=160 Identities=22% Similarity=0.290 Sum_probs=99.8
Q ss_pred CCCcccchhhHHHHHHhhcCCCCC-eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHH
Q 048627 62 KNQLVGVESTVEEIESLLGVESKD-VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
.+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+++.+... ...+|++.+.- .....+..++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~ec-----ft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVEC-----FTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHHh-----ccHHHHHHHH
Confidence 356789999999999999755543 44568999999999999999998873 34567764333 5667777777
Q ss_pred HHHhcC-CCCCC----------cchHHHHH--hhc--CCcEEEEEcCCCChHHHHHH-----h---cCCCCCCCCceEEe
Q 048627 141 LLNLLK-DENVI----------PDIDLNFR--RLS--RIKILIVFDDVTCFTQLESL-----I---GSLDWLTPVSRIII 197 (689)
Q Consensus 141 l~~~~~-~~~~~----------~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~l-----~---~~l~~~~~g~~ili 197 (689)
+.+... ..+.. +.+..+.+ ... ++.++||+|+++...+.++. . ..++ .+.. +|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEE
Confidence 777742 21111 11223333 222 45899999999765442221 1 1111 2223 344
Q ss_pred eccch---hhhhhcCc--ceEEEcCCCCHHHHHHHHHHhc
Q 048627 198 TTRNK---QVLRNWEV--RKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 198 TtR~~---~~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
++-.. .-...++. ..++..+.-+.+|..+++.+.-
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 44322 11221233 2467888999999999887654
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.93 E-value=7e-05 Score=70.23 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=41.9
Q ss_pred CCCCCcccchhhHHHHHHhhc--CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 60 DNKNQLVGVESTVEEIESLLG--VESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~--~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
...+.++|.|.+.+.|.+-.. ........|.++|..|.|||++++++.+.+...-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 345679999999988866432 1222456678999999999999999999987654
No 159
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.00021 Score=74.52 Aligned_cols=162 Identities=18% Similarity=0.195 Sum_probs=96.4
Q ss_pred hhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCC
Q 048627 70 STVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDEN 149 (689)
Q Consensus 70 ~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 149 (689)
.-+.++.+.+. ..+.++.|+|+-++||||+++.+.....+. .+|+......... ..+.+......
T Consensus 24 ~~~~~l~~~~~---~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~~~-------- 88 (398)
T COG1373 24 KLLPRLIKKLD---LRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRAYI-------- 88 (398)
T ss_pred hhhHHHHhhcc---cCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHHHH--------
Confidence 34444554442 222399999999999999997776665544 5666532222222 11111111111
Q ss_pred CCcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhh------cCcceEEEcCCCCHHH
Q 048627 150 VIPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN------WEVRKIYEVEALEYHH 223 (689)
Q Consensus 150 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~------~~~~~~~~l~~L~~~~ 223 (689)
..-..++..++||.|.....|+..+..+...++. +|++|+-+...... .+....+.+-||+..|
T Consensus 89 ---------~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 89 ---------ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred ---------HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 1111277899999999999999888877665665 88888876644321 3455789999999999
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 224 ALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 224 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
-..+-...+ ... .. ...-+-.-..||.|.++..
T Consensus 159 fl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 159 FLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred HHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 877543000 000 11 1122223456899987644
No 160
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.9e-07 Score=87.78 Aligned_cols=176 Identities=18% Similarity=0.113 Sum_probs=120.0
Q ss_pred ccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCC----CCcCCC
Q 048627 500 SKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE----ISSGNI 575 (689)
Q Consensus 500 ~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~----~~~~~L 575 (689)
..|+++++++...-...+ ...+..+.+|+.|.|.++.....+-..+.+-.+|+.|+++.|+.++...- ..+..|
T Consensus 185 sRlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 358888888765221111 12345678999999999988777777888899999999999987765432 123567
Q ss_pred cEEEcccccccc-----cCcccccCCCCCEEecCCCCCC---CCCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCC
Q 048627 576 SWLLLRGSAIEE-----LPSSIERQLRLSWLDLTDCKMF---KSLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSP 646 (689)
Q Consensus 576 ~~L~l~~~~l~~-----l~~~i~~l~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L 646 (689)
..|+++.|.+.. +-..|+ ++|..|+++++... ..+..-...+++|.+|+|+.|..+.. ....+..++.|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 888888876641 122232 57888888887541 12222344678999999998876653 23345678899
Q ss_pred CEEEccCCCCc--cccchhhccCCCcEEecCCCCC
Q 048627 647 ILLNLAETNIE--RIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 647 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
+.|.++.|..- .---.+...|+|.+|++.+|--
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 99999998743 2222356778899999888743
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00039 Score=70.97 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=81.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
....+.|||..|.|||.|++++.+......+...++. .........+...+.. ...+.+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~-----~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRD-----NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHh-----hhHHHHHHhh--c
Confidence 3567899999999999999999999877766433333 1112222333333322 2344555555 3
Q ss_pred cEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccch---------hhhhhcCcceEEEcCCCCHHHHHHHHHH
Q 048627 165 KILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWEVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 165 ~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
-=++++||++-.. .-+++...+.. ...|-.||+|++.. .....+...-++++.+.+.+.....+..
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 3478899995321 12222222211 13344899998643 2233345567899999999999999888
Q ss_pred hcc
Q 048627 231 HAF 233 (689)
Q Consensus 231 ~~~ 233 (689)
.+.
T Consensus 256 ka~ 258 (408)
T COG0593 256 KAE 258 (408)
T ss_pred HHH
Confidence 663
No 162
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.85 E-value=4.4e-05 Score=77.17 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCc------c----hH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIP------D----ID 155 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~------~----~~ 155 (689)
..++|+|++|+|||||++.+++.+... |+..+|+..+++ .+.++.++++.+...+.....+.. . .+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 468899999999999999999987654 888888885433 235678888888655443332221 1 11
Q ss_pred HHHH-hhcCCcEEEEEcCCCChH
Q 048627 156 LNFR-RLSRIKILIVFDDVTCFT 177 (689)
Q Consensus 156 ~l~~-~l~~~~~LlVlDdv~~~~ 177 (689)
..+. +-++++++|++|++....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 1111 235899999999996544
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=4.7e-05 Score=85.09 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=83.2
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcCCCChHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 136 (689)
+.++||+.++.++.+.|... ...-+.++|++|+|||++|+.++..+...- ...+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHHHH
Confidence 46999999999999988642 233456899999999999999998853321 2222221 11111
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhh-cCCcEEEEEcCCCCh----------HHHHHHhcCCCCCCCCceEEeeccchhhh
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRL-SRIKILIVFDDVTCF----------TQLESLIGSLDWLTPVSRIIITTRNKQVL 205 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~g~~iliTtR~~~~~ 205 (689)
+....-...-......+.+.+ +..+.+|+||+++.. .+...++.++.. ...-++|-+|..++..
T Consensus 254 ----laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_pred ----hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHH
Confidence 100000000001112222222 345679999999632 122222222111 1223455444433321
Q ss_pred h-------hcCcceEEEcCCCCHHHHHHHHHHh
Q 048627 206 R-------NWEVRKIYEVEALEYHHALELFSRH 231 (689)
Q Consensus 206 ~-------~~~~~~~~~l~~L~~~~~~~lf~~~ 231 (689)
. .....+.+.+++++.+++.+++...
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 1 1123368999999999999998754
No 164
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.84 E-value=0.00028 Score=74.95 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=93.3
Q ss_pred CCCcccchhhHHHHHHhh---c-----CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-CCC
Q 048627 62 KNQLVGVESTVEEIESLL---G-----VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-PGG 132 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l---~-----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~ 132 (689)
..++.|.+...+.+.+.. . .+-..++-|.++|++|+|||.+|+.+++.+.-.| +.+. ....... ...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-VGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-hHHhcccccCh
Confidence 346778877666665432 1 0113457789999999999999999999875332 1111 1111000 000
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----------H----HHHHhcCCCCCCCCceEEee
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----------Q----LESLIGSLDWLTPVSRIIIT 198 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~----~~~l~~~l~~~~~g~~iliT 198 (689)
-..-.++++ ...-...+.+|+||+++..- . ...++..+.....+.-||.|
T Consensus 303 se~~l~~~f----------------~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 303 SESRMRQMI----------------RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred HHHHHHHHH----------------HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111111111 11123568899999996321 0 11222222212233445667
Q ss_pred ccchhhhh-h----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 199 TRNKQVLR-N----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 199 tR~~~~~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
|....... . -.....+.++..+.++..++|..+....... .........+++.+.|.--|
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~-~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK-SWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC-cccccCHHHHHhhcCCCCHH
Confidence 75543221 1 1345678899999999999998886432211 10112245667777766543
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.84 E-value=0.00016 Score=78.20 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=94.0
Q ss_pred CCCCcccchhhHHHHHHhhc---C-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 61 NKNQLVGVESTVEEIESLLG---V-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~---~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
..++++|.+...+++.+++. . +...++-+.++|++|+|||++|+.++....-.| +.+.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~i~--------- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSIS--------- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe---eecc---------
Confidence 34467888877766665442 1 122345688999999999999999998754322 1111
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----------------HHHHHhcCCCCC--CCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----------------QLESLIGSLDWL--TPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~g 192 (689)
...+.... .+. ........+.......+.+|+|||++... .+..++..+... ..+
T Consensus 121 --~~~~~~~~----~g~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 121 --GSDFVEMF----VGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred --HHHHHHHH----hcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 00111100 000 00011112222333567899999995421 122233332211 234
Q ss_pred ceEEeeccchhhhh-h----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 193 SRIIITTRNKQVLR-N----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 193 ~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
..||.||....... . ......+.++..+.++..++|..++....... ......+++.+.|..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 45566665443211 1 12346799999999999999988763322211 122457777787754
No 166
>PRK08181 transposase; Validated
Probab=97.82 E-value=6.5e-05 Score=73.24 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=28.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+.|+|++|+|||.||..+++....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999998765544555654
No 167
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00064 Score=68.11 Aligned_cols=175 Identities=12% Similarity=0.124 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-c-cc-ceEEee-eccch-hcCCCChHHHHHHHHHHhcC
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-D-FE-GTCFLE-NVRVE-SQRPGGLAWLRQKLLLNLLK 146 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~-f~-~~~~~~-~~~~~-~~~~~~~~~l~~~~l~~~~~ 146 (689)
.+.+.+.+..+ .-...+.++|+.|+||+++|+.++..+-- . .. ..|=.+ ..+.. ...+.++..+.. ..+
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-----~~~ 84 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-----IDN 84 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-----ccC
Confidence 44556665322 23567889999999999999999987421 1 10 000000 00000 000111110000 000
Q ss_pred CCCCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccch-hhhhh-cCcceEEEcC
Q 048627 147 DENVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKIYEVE 217 (689)
Q Consensus 147 ~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~-~~~~~~~~l~ 217 (689)
.....+.+..+.+.+. +++-++|+|+++... ...+|+..+..-.+++.+|++|.+. .+++. ......+.+.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 1111223333333332 556688899998654 3566666665545667776666654 44444 3345789999
Q ss_pred CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 218 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 218 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+++.+++.+.+..... . + ...+...+..++|.|..
T Consensus 165 ~~~~~~~~~~L~~~~~---~--~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 165 PPEEQQALDWLQAQSS---A--E--ISEILTALRINYGRPLL 199 (325)
T ss_pred CCCHHHHHHHHHHHhc---c--C--hHHHHHHHHHcCCCHHH
Confidence 9999999998877531 1 1 12356678889999963
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=2.1e-06 Score=90.42 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.0
Q ss_pred CCCCCCCCcccEEeccCCCC
Q 048627 520 PTLMPRLNKLVFLNLRGSKS 539 (689)
Q Consensus 520 ~~~~~~l~~L~~L~l~~~~~ 539 (689)
+-.+..+..|++|.+++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CceeccccceeeEEecCcch
Confidence 34566789999999999984
No 169
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.79 E-value=0.00048 Score=66.94 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCCcccchh---hHHHHHHhhcCC-CCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc------ceEEeeeccchhcCCC
Q 048627 62 KNQLVGVES---TVEEIESLLGVE-SKDVWALGIWGIGGIGKTTIARAIFDKISGDFE------GTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~---~~~~l~~~l~~~-~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 131 (689)
.+..||-.. .++.+.+++... ....+-+.|+|.+|+|||++++++.+.+-..++ .++++. .+...
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p 107 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEP 107 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCC
Confidence 345666443 456677777532 334577999999999999999999987543332 223332 23337
Q ss_pred ChHHHHHHHHHHhcCCCCCCcch----HHHHHhhc-CCcEEEEEcCCCCh-----HHHHHHhcCCCCCCC---CceEEee
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDI----DLNFRRLS-RIKILIVFDDVTCF-----TQLESLIGSLDWLTP---VSRIIIT 198 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~----~~l~~~l~-~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~---g~~iliT 198 (689)
+...+...++.++.......... ......++ -+--+||||++.+. .+-.+++..+...++ -+-|.+-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 88899999999988755333222 22223333 23458899999652 112222222221222 2334455
Q ss_pred ccchhhhhh-----cCcceEEEcCCCCHHH-HHHHHHHhccC---CCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 199 TRNKQVLRN-----WEVRKIYEVEALEYHH-ALELFSRHAFK---RNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 199 tR~~~~~~~-----~~~~~~~~l~~L~~~~-~~~lf~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
|++..-+-. ......+.++....++ ...|+...... .....-...+.+..|...++|+.--+.
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 544321111 1223467777765543 34444333211 111223446789999999999875443
No 170
>PRK12377 putative replication protein; Provisional
Probab=97.78 E-value=6.7e-05 Score=72.17 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+.|+|++|+|||+||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999999776655556655
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=0.00016 Score=78.71 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=43.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCC---CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVES---KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~---~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
|...+.++|.+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556689999999999999986322 2346799999999999999999998753
No 172
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.76 E-value=3.9e-05 Score=70.21 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=26.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..-+.|+|.+|+|||.||..+++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999998665544556665
No 173
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00057 Score=66.89 Aligned_cols=169 Identities=20% Similarity=0.290 Sum_probs=100.3
Q ss_pred CcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCC
Q 048627 64 QLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGG 132 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 132 (689)
.+=|-+.++++|.+.... +-+.++=|.+||++|.|||-||++|+++....| +..++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH-------
Confidence 344788889999887642 124477789999999999999999999865443 331111
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHh---h-cCCcEEEEEcCCCC-------------hH---HHHHHhcCCCCCCC-
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRR---L-SRIKILIVFDDVTC-------------FT---QLESLIGSLDWLTP- 191 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~---l-~~~~~LlVlDdv~~-------------~~---~~~~l~~~l~~~~~- 191 (689)
.+.+..+ + ++...+++. . ...+.+|.+|.++. .+ .+-+|+..++.|.+
T Consensus 220 --ElVqKYi----G-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 --ELVQKYI----G-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred --HHHHHHh----c-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1111111 1 112222222 2 25678999999842 11 14445555555544
Q ss_pred -CceEEeeccchhhhh-----hcCcceEEEcCCCCHHHHHHHHHHhccCCC-CCChhHHHHHHHHHHHhCCCchh
Q 048627 192 -VSRIIITTRNKQVLR-----NWEVRKIYEVEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 192 -g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
..+||..|-..+.+. .-..+..++++.-+.+.-.+.|.-++..=. ..+.+ .+.+++.+.|.--|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGA 359 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGA 359 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchH
Confidence 357777665443332 123346789998888888888887763322 12222 45667777776644
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0013 Score=65.81 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=96.4
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee-ccc-hhcCCCChHHHHHHHHHHhcC--
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN-VRV-ESQRPGGLAWLRQKLLLNLLK-- 146 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~~~-- 146 (689)
..+.+.+.+.. ..-+..+.++|+.|+||+++|..+++.+-..-...+-.+. ... .+..+.++..+-.. -..-..
T Consensus 12 ~~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~k~ 89 (319)
T PRK08769 12 AYDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcccccc
Confidence 34556665532 2235578899999999999999999874211100000000 000 00000111000000 000000
Q ss_pred -CCCCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccc-hhhhhh-cCcceEEEc
Q 048627 147 -DENVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN-KQVLRN-WEVRKIYEV 216 (689)
Q Consensus 147 -~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~-~~~~~~-~~~~~~~~l 216 (689)
.....+.+..+.+.+. +++-++|||+++... .-.+|+..+..-.+++.+|++|.+ ..+++. ......+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 0011122222333222 456689999998653 344555555444567767666654 444433 334568899
Q ss_pred CCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 217 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 217 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
.+++.+++.+.+.... .. ...+..++..++|.|+....+.
T Consensus 170 ~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999998886531 11 2236678999999998654443
No 175
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.5e-05 Score=52.49 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=19.2
Q ss_pred CCCEEEccCCCCccccchhhccCCCcEEecCCCCCC
Q 048627 645 SPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 645 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l 680 (689)
+|++|++++|+++++|..+.+|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555555555555555555555555555543
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00054 Score=69.74 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=87.4
Q ss_pred Cccc-chhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-cc--------------------ccceEEee
Q 048627 64 QLVG-VESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GD--------------------FEGTCFLE 121 (689)
Q Consensus 64 ~~vG-r~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~--------------------f~~~~~~~ 121 (689)
.++| -+..++.+.+.+..+ .-+.+..++|+.|+||||+|+.+++.+- .. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 666778888887522 2356678999999999999999988742 11 11122221
Q ss_pred eccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHh-----hcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCce
Q 048627 122 NVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRR-----LSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSR 194 (689)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~ 194 (689)
.. ... -.+ +.+..+.+. ..+.+-++|+|+++... ...+|+..+....+.+.
T Consensus 85 ~~---~~~-i~i------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 85 PD---GQS-IKK------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred cc---ccc-CCH------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 00 000 111 111222222 22445578999997543 35566666655556777
Q ss_pred EEeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHh
Q 048627 195 IIITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRH 231 (689)
Q Consensus 195 iliTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 231 (689)
+|++|.+. .+.+. ......+++.+++.++..+.+...
T Consensus 143 ~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 143 AILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77676654 33332 334578999999999998888653
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0017 Score=64.96 Aligned_cols=178 Identities=14% Similarity=0.164 Sum_probs=95.6
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh-hcccc-ceEEee-eccch-hcCCCChHHHHHHHHHHhcC
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI-SGDFE-GTCFLE-NVRVE-SQRPGGLAWLRQKLLLNLLK 146 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~-~~~f~-~~~~~~-~~~~~-~~~~~~~~~l~~~~l~~~~~ 146 (689)
..+++.+.+.. ..-+..+.++|+.|+||+++|..++..+ ...-. ..|=.+ ..+.. ...+.++..+.. .-.+
T Consensus 11 ~~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p----~~~~ 85 (319)
T PRK06090 11 VWQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP----EKEG 85 (319)
T ss_pred HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec----CcCC
Confidence 34455555532 2235678899999999999999999874 21100 000000 00000 000011110000 0000
Q ss_pred CCCCCcchHHHHHhh-----cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccc-hhhhhh-cCcceEEEcC
Q 048627 147 DENVIPDIDLNFRRL-----SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN-KQVLRN-WEVRKIYEVE 217 (689)
Q Consensus 147 ~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~-~~~~~~-~~~~~~~~l~ 217 (689)
.....+.+..+.+.+ .++.-++|+|+++... ...+++..+..-.+++.+|++|.+ ..+++. ......+.+.
T Consensus 86 ~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~ 165 (319)
T PRK06090 86 KSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVT 165 (319)
T ss_pred CcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCC
Confidence 001112222332232 2445688899997653 355666666544566666655554 445544 3445789999
Q ss_pred CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 218 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 218 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
+++.+++.+.+.... . + ....+++.++|.|+....+
T Consensus 166 ~~~~~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 166 PPSTAQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCHHHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 999999999886542 1 1 1346788999999866544
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.71 E-value=0.00052 Score=78.17 Aligned_cols=174 Identities=14% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hcCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQRP 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 130 (689)
+.+.|.+..++++.+.+.. +-...+.|.++|++|+|||++|+.+++.....| +.+. .... +...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~ 253 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYY 253 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccc
Confidence 3578999999998887631 112346788999999999999999998875433 2222 1111 1000
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCCC-CCCceEE
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQLESLIGSLDWL-TPVSRII 196 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~-~~g~~il 196 (689)
.....-.+ ..+.......+.+|+|||++.. .....+...+... ..+..++
T Consensus 254 g~~~~~l~----------------~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 254 GESEERLR----------------EIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred cHHHHHHH----------------HHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 00111111 1122222355678999998532 1122333332222 2233344
Q ss_pred e-eccchh-hhhhc----CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 197 I-TTRNKQ-VLRNW----EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 197 i-TtR~~~-~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
| ||.... +...+ .....+.+...+.++..+++........... ......+++.+.|..-+
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCHH
Confidence 4 444332 11111 1235688888899998888886542211111 11256677777776543
No 179
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.70 E-value=0.00025 Score=68.14 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+..+.++...-..+...+.++|.+|+|||+||..+++.+......++|+.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444444322223357889999999999999999999766545555554
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.70 E-value=0.00019 Score=65.47 Aligned_cols=50 Identities=28% Similarity=0.293 Sum_probs=41.1
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..-.++||-++.++.+.-.-. ++..+.+.|.||+|+||||-+..+++.+-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 344578999999999887764 45577888999999999999999998853
No 181
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00091 Score=67.79 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=96.6
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-c-cc-ceEEee-eccch-hcCCCChHHHHHHHHHHhc
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-D-FE-GTCFLE-NVRVE-SQRPGGLAWLRQKLLLNLL 145 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~-f~-~~~~~~-~~~~~-~~~~~~~~~l~~~~l~~~~ 145 (689)
.-+++.+.+.. ..-...+.++|+.|+||+++|..++..+-- + .+ ..|=.+ ..+.. ...+.++..+.- ...
T Consensus 10 ~~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p----~~~ 84 (334)
T PRK07993 10 DYEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP----EKG 84 (334)
T ss_pred HHHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec----ccc
Confidence 34556666632 223567889999999999999999988521 1 00 000000 00000 000011110000 000
Q ss_pred CCCCCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccc-hhhhhh-cCcceEEEc
Q 048627 146 KDENVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN-KQVLRN-WEVRKIYEV 216 (689)
Q Consensus 146 ~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~-~~~~~~-~~~~~~~~l 216 (689)
......+.+..+.+.+. +++-++|+|+++... ...+|+..+..-.+++.+|++|.+ ..+++. ....+.+.+
T Consensus 85 ~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 85 KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence 00111223333333332 566689999997653 355566665544566666666654 445544 334467899
Q ss_pred CCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 217 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 217 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
.+++.+++.+.+.... + .+ .+.+..++..++|.|...
T Consensus 165 ~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 165 APPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHH
Confidence 9999999998886542 1 11 233677899999999643
No 182
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.68 E-value=0.01 Score=60.54 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=68.0
Q ss_pred CcEEEEEcCCCC-----------hHHHHHHhcCCCCCCCCceEEeeccchhhhh----hc--CcceEEEcCCCCHHHHHH
Q 048627 164 IKILIVFDDVTC-----------FTQLESLIGSLDWLTPVSRIIITTRNKQVLR----NW--EVRKIYEVEALEYHHALE 226 (689)
Q Consensus 164 ~~~LlVlDdv~~-----------~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~----~~--~~~~~~~l~~L~~~~~~~ 226 (689)
++-+||||++.. ..+|.+.+.. ..-.+||++|-+..... .+ .....+.|...+.+.|..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 367999999832 2235554443 34567888887653322 22 233678999999999999
Q ss_pred HHHHhccCCCCC-------------C-----hhHHHHHHHHHHHhCCCchhHHHhhhhhcC
Q 048627 227 LFSRHAFKRNHP-------------D-----VGYEKLSSNVMKYAQGVPLALKVLGCFLYK 269 (689)
Q Consensus 227 lf~~~~~~~~~~-------------~-----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 269 (689)
+...+....... . ..........+..+||--.-++.+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 123445677888889988888888888863
No 183
>PRK06526 transposase; Provisional
Probab=97.68 E-value=5.5e-05 Score=73.39 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEE
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCF 119 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 119 (689)
...+.|+|++|+|||+||..+..........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568899999999999999999886544333344
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.63 E-value=0.00011 Score=75.74 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=42.6
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc--cccceEEee
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG--DFEGTCFLE 121 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~ 121 (689)
.++++.+..++.+...+.. .+.|.++|++|+|||++|+.+++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4578888899999888852 346889999999999999999998754 344555554
No 185
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.62 E-value=0.0014 Score=65.31 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLS 162 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~ 162 (689)
..++.++|||++|+|||.+|+.++..+.-.| +.++ ..+. +.....-.+.+++.+...... ..-+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A~~~-----------a~~~ 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREAADI-----------IKKK 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHHHHH-----------hhcc
Confidence 4578999999999999999999999976543 2222 2222 222123344444444332110 0014
Q ss_pred CCcEEEEEcCCCCh------------HHH--HHHhcCCC--------------CCCCCceEEeeccchhhhhh--c--Cc
Q 048627 163 RIKILIVFDDVTCF------------TQL--ESLIGSLD--------------WLTPVSRIIITTRNKQVLRN--W--EV 210 (689)
Q Consensus 163 ~~~~LlVlDdv~~~------------~~~--~~l~~~l~--------------~~~~g~~iliTtR~~~~~~~--~--~~ 210 (689)
+++.+|+|||++.. .+. ..|+...+ ....+..||+||...+.+.. . +.
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 68899999998520 111 12221110 12345667888866543221 1 11
Q ss_pred -ceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 211 -RKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 211 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
...| ..-+.++..+++..+....+ .+ .....+++....|-|+
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~~-l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDDG-VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccCC-CC---HHHHHHHHHcCCCCCc
Confidence 1233 34567777788776653322 21 2345566666666654
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.00026 Score=67.38 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=75.3
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH-h-hccccceEEeeeccchhc----CCCChHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK-I-SGDFEGTCFLENVRVESQ----RPGGLAWL 136 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l 136 (689)
..+.++......+..++.. ...|.+.|++|.|||+||.+++.+ + .+.|..++.....-.... -+.+...-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567888888888888842 248999999999999999999885 3 444554444332211111 11222221
Q ss_pred HHHHHHHhcCCC---CCCcchHHH------------HHhhcCCcE---EEEEcCCCCh--HHHHHHhcCCCCCCCCceEE
Q 048627 137 RQKLLLNLLKDE---NVIPDIDLN------------FRRLSRIKI---LIVFDDVTCF--TQLESLIGSLDWLTPVSRII 196 (689)
Q Consensus 137 ~~~~l~~~~~~~---~~~~~~~~l------------~~~l~~~~~---LlVlDdv~~~--~~~~~l~~~l~~~~~g~~il 196 (689)
..-++..+...- ........+ ..+++++.+ +||+|++.+. .+...++.. .+.++++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEE
Confidence 111111111000 000011111 124455544 9999999764 445555544 47899999
Q ss_pred eeccchh
Q 048627 197 ITTRNKQ 203 (689)
Q Consensus 197 iTtR~~~ 203 (689)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9876553
No 187
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00024 Score=75.81 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=92.4
Q ss_pred CCCcccchhhHHHHHHhhcC----CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 62 KNQLVGVESTVEEIESLLGV----ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~----~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
..+-+|.++..++|.+.|.- ..-..++++++||||+|||.|++.++..+...|-... ++.+.+. ..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s----LGGvrDE-AEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS----LGGVRDE-AEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe----cCccccH-HHhcccc
Confidence 45678999999999998852 2234579999999999999999999999877663211 2222111 1111000
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH------HHHHHhcCCCCCC-------------CCceE-Ee
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT------QLESLIGSLDWLT-------------PVSRI-II 197 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-------------~g~~i-li 197 (689)
+..... .+...++.+ ...+.+.-+++||.++... ...+|+..++.-. .=|.| .|
T Consensus 397 RTYIGa-----mPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 397 RTYIGA-----MPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccccc-----CChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 000000 011122222 2335567789999996422 1334444332111 11344 34
Q ss_pred eccch-h-h-hhhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 198 TTRNK-Q-V-LRNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 198 TtR~~-~-~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
+|-+. + + .+.++...++++.+-+++|-.+.-.++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44432 2 1 2335666899999999999998877776
No 188
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.5e-05 Score=75.28 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=96.7
Q ss_pred CCcccEEeccCCCCCc--ccCccCCCCCCCCEEeccCCCCC---CCCCCCCcCCCcEEEccccccc--ccCcccccCCCC
Q 048627 526 LNKLVFLNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKL---KRLPEISSGNISWLLLRGSAIE--ELPSSIERQLRL 598 (689)
Q Consensus 526 l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~l---~~~p~~~~~~L~~L~l~~~~l~--~l~~~i~~l~~L 598 (689)
.+.++.+||.+|.+.. ++...+.+||.|++|+++.|+.. +.+| ....+|+.|.|.++.+. .+...+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4666777777766432 23333456777777777776543 3344 22367777777777654 455556677777
Q ss_pred CEEecCCCCCCC-------------------CCCc----------ccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCE
Q 048627 599 SWLDLTDCKMFK-------------------SLPS----------SLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPIL 648 (689)
Q Consensus 599 ~~L~l~~~~~~~-------------------~lp~----------~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~ 648 (689)
+.|.++.|..-. ..|. -..-.+++..+-+..|..-.. --.....++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 777777763311 0000 011235666666666543221 1223455778888
Q ss_pred EEccCCCCcccc--chhhccCCCcEEecCCCCCCCCC
Q 048627 649 LNLAETNIERIP--KSIIQLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 649 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~ 683 (689)
|+++.+++.++. +.+..++.|..|++.+++++..+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 999999888555 35678999999999999998654
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=97.60 E-value=0.00011 Score=71.88 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=26.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+.|+|++|+|||+||..++.........+.|+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346789999999999999999887544433444443
No 190
>PRK06921 hypothetical protein; Provisional
Probab=97.60 E-value=0.0001 Score=72.14 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
...+.++|.+|+|||+||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678899999999999999999997655 45556665
No 191
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.60 E-value=8.5e-07 Score=87.48 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=44.8
Q ss_pred cCCCCCEEecCCCCCCC--CCCcccCCCCCccEEEeecCCCCCcc-----CcccCCCCCCCEEEccCCCCc--cccchhh
Q 048627 594 RQLRLSWLDLTDCKMFK--SLPSSLCKLKSLGVLDLHGCSNLRRL-----PECLGQLSSPILLNLAETNIE--RIPKSII 664 (689)
Q Consensus 594 ~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~-----p~~l~~l~~L~~L~l~~~~l~--~lp~~~~ 664 (689)
+.+.|+.+++..|.... .+..--.+++.|++|.+++|...... ...-..+..|+.+.+++|++. .....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 34556666666554421 12222334566666666666554332 222233455666666666654 3334455
Q ss_pred ccCCCcEEecCCCCC
Q 048627 665 QLFMLRYLLLNCSEG 679 (689)
Q Consensus 665 ~l~~L~~L~l~~~~~ 679 (689)
.+++|+.+++.+|..
T Consensus 424 ~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 424 ICRNLERIELIDCQD 438 (483)
T ss_pred hCcccceeeeechhh
Confidence 566666666666654
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.59 E-value=0.00012 Score=64.79 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=28.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57889999999999999999998766543445544
No 193
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.57 E-value=0.0012 Score=75.13 Aligned_cols=173 Identities=15% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hcCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQRP 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 130 (689)
..+.|.+...++|.+.+.. +-..++-|.++|++|+|||++|+.+++.....| +.+. ..+. +...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hHHHhhccc
Confidence 4567888887777776531 112355688999999999999999999865433 1111 1000 0000
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--------------HHHHHHhcCCCCC--CCCce
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--------------TQLESLIGSLDWL--TPVSR 194 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~g~~ 194 (689)
..-....+ ..+...-+..+.+|+||+++.. .....++..+... ..+..
T Consensus 529 Gese~~i~----------------~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 529 GESEKAIR----------------EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred CcHHHHHH----------------HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 00111111 1112222356789999998532 1123333333321 22344
Q ss_pred EEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 195 IIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 195 iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
||.||...+... . . .....+.++..+.++..++|..+..+..... ......+++.+.|.--
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTG 658 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCH
Confidence 566665543322 1 1 2346889999999999999977653222111 1114566777777553
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00066 Score=71.53 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=110.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-cc-----ccceEEeeeccchhcCCCC
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GD-----FEGTCFLENVRVESQRPGG 132 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~-----f~~~~~~~~~~~~~~~~~~ 132 (689)
|....++||.+.....|...+..+. -.......|+-|+||||+|+-++..+- .. .-..|..| ..... ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~--g~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINE--GS 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhhc--CC
Confidence 3345678999999999999986332 245667899999999999999988742 11 11112211 00000 00
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhhc-----CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccch-hh
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRLS-----RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QV 204 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~-~~ 204 (689)
..++.+ +... .....+.+..+.+... ++.=+.|+|+|+... .+.+|+..+..-.+...+|+.|.+. .+
T Consensus 87 ~~DviE--iDaA--Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 87 LIDVIE--IDAA--SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cccchh--hhhh--hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 000000 0000 0011122333333322 455688999997654 4788887776545566666655554 33
Q ss_pred hh-hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 205 LR-NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 205 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
.. .....+.|.+..++.++-...+...+-...- ...++....|++..+|...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCChh
Confidence 32 2455678999999999999988887743332 2235566777777777654
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.53 E-value=0.00018 Score=72.46 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+.++|.+|+|||+||..+++.+..+...++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999999765555566665
No 196
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00012 Score=49.26 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=19.2
Q ss_pred CccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc
Q 048627 621 SLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 621 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
+|++|++++|... .+|..++++++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4555555554332 34444555555555555555555443
No 197
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=2.2e-05 Score=86.79 Aligned_cols=151 Identities=25% Similarity=0.231 Sum_probs=96.5
Q ss_pred CcccEEeccCCCCCc-ccCccCC-CCCCCCEEeccCCCCCCC-CCC--CCcCCCcEEEcccccccccCcccccCCCCCEE
Q 048627 527 NKLVFLNLRGSKSLK-SLPSEIF-NLEFLTKLDLSGCSKLKR-LPE--ISSGNISWLLLRGSAIEELPSSIERQLRLSWL 601 (689)
Q Consensus 527 ~~L~~L~l~~~~~~~-~~p~~l~-~l~~L~~L~l~~~~~l~~-~p~--~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L 601 (689)
.+|++|+++|..... ..|..++ .+|+|++|.+++=..... +.. ..+++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 678888887755332 2223333 578888888887221110 000 1236888999999998888 779999999999
Q ss_pred ecCCCCCCC-CCCcccCCCCCccEEEeecCCCCCcc------CcccCCCCCCCEEEccCCCCc-cccch-hhccCCCcEE
Q 048627 602 DLTDCKMFK-SLPSSLCKLKSLGVLDLHGCSNLRRL------PECLGQLSSPILLNLAETNIE-RIPKS-IIQLFMLRYL 672 (689)
Q Consensus 602 ~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~------p~~l~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L 672 (689)
.+.+-.+.. ..-..+.+|++|++||+|.......- .++-..+|+|+.||.+++.+. .+-+. +..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 888766532 22235778999999999875433221 123345889999999998876 33222 3445666666
Q ss_pred ecCCCC
Q 048627 673 LLNCSE 678 (689)
Q Consensus 673 ~l~~~~ 678 (689)
.+-+|.
T Consensus 281 ~~~~~~ 286 (699)
T KOG3665|consen 281 AALDCL 286 (699)
T ss_pred hhhhhh
Confidence 554443
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.48 E-value=0.0014 Score=59.16 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=72.6
Q ss_pred cchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc--------------------cccceEEeeeccch
Q 048627 67 GVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG--------------------DFEGTCFLENVRVE 126 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~--------------------~f~~~~~~~~~~~~ 126 (689)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..+++.+-. ..+...++.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 5566777888887522 23556889999999999999999988421 1223333321000
Q ss_pred hcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccchh-
Q 048627 127 SQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ- 203 (689)
Q Consensus 127 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~~- 203 (689)
... -...++. .+...+.... ..++.=++||||++... ...+|+..+......+.+|++|++..
T Consensus 79 ~~~-i~i~~ir-~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 79 KKS-IKIDQIR-EIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSS-BSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred cch-hhHHHHH-HHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 000 1222222 2222222111 12456688999998643 35556555544467888888887664
Q ss_pred hhhh-cCcceEEEcCCCC
Q 048627 204 VLRN-WEVRKIYEVEALE 220 (689)
Q Consensus 204 ~~~~-~~~~~~~~l~~L~ 220 (689)
+.+. ......+.+.+++
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 3332 3444667776653
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.47 E-value=0.0034 Score=66.95 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=121.1
Q ss_pred CCCCCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhh-----ccccceEEeeeccchhcCCC
Q 048627 60 DNKNQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKIS-----GDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~ 131 (689)
..+..+-+|+.+..+|...+.. .......+.|.|.+|.|||..+..|.+.+. +.-+...|+.. ......
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI---Ngm~l~ 469 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI---NGLRLA 469 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE---cceeec
Confidence 3667788999999999988752 223445899999999999999999998753 22233333331 111125
Q ss_pred ChHHHHHHHHHHhcCCCCC-CcchHHHHHhhc-----CCcEEEEEcCCCChHH--HHHHhcCCCCC-CCCceEEeecc-c
Q 048627 132 GLAWLRQKLLLNLLKDENV-IPDIDLNFRRLS-----RIKILIVFDDVTCFTQ--LESLIGSLDWL-TPVSRIIITTR-N 201 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~-~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~~-~~g~~iliTtR-~ 201 (689)
...++...+...+.+.... ...++.+..+.. .+..++++|+++.... -+.+...+.|- .++++++|-+= +
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 5778888888888776533 245555555554 4568889999864322 22222333432 46777654432 1
Q ss_pred -hhhh---------hhcCcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCchhHHHhhhh
Q 048627 202 -KQVL---------RNWEVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPLALKVLGCF 266 (689)
Q Consensus 202 -~~~~---------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 266 (689)
.+.. ..++ ...+...+-+.++..+....+..+... .....+-++++++.-.|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111 1111 246778888888888888777643321 12233344555555555555555544443
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0029 Score=65.09 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC-CChHHHHHHHHHHhcCCCCCCcchHHHHHhhc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP-GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLS 162 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~ 162 (689)
.+...+.+.|++|+|||+||..++. ...|+.+-.++.-.-+.-.. .....+ + ......-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSpe~miG~sEsaKc~~i-~----------------k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISPEDMIGLSESAKCAHI-K----------------KIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeChHHccCccHHHHHHHH-H----------------HHHHHhhc
Confidence 4567888999999999999999887 56788776665211110000 000000 1 11222334
Q ss_pred CCcEEEEEcCCCChHH------------HHHHhcCCCCCCC---CceEEeeccchhhhhhcCc----ceEEEcCCCCH-H
Q 048627 163 RIKILIVFDDVTCFTQ------------LESLIGSLDWLTP---VSRIIITTRNKQVLRNWEV----RKIYEVEALEY-H 222 (689)
Q Consensus 163 ~~~~LlVlDdv~~~~~------------~~~l~~~l~~~~~---g~~iliTtR~~~~~~~~~~----~~~~~l~~L~~-~ 222 (689)
..--.||+||++..-+ +++|...+....| .--|+-||....++..++. ...|+++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 5567899999954322 3444433332333 3335667777778777653 35789999887 6
Q ss_pred HHHHHHHHh
Q 048627 223 HALELFSRH 231 (689)
Q Consensus 223 ~~~~lf~~~ 231 (689)
+..+.+...
T Consensus 677 ~~~~vl~~~ 685 (744)
T KOG0741|consen 677 QLLEVLEEL 685 (744)
T ss_pred HHHHHHHHc
Confidence 677666554
No 201
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.46 E-value=0.0022 Score=72.67 Aligned_cols=160 Identities=15% Similarity=0.156 Sum_probs=86.7
Q ss_pred CCCcccchhhHHHHHHhhcC----CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 62 KNQLVGVESTVEEIESLLGV----ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~----~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
....+|.++..++|.+++.. .......+.++|++|+||||+|+.++..+...|-. +. .... .+...+.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~-~~~~----~d~~~i~ 392 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA-LGGV----RDEAEIR 392 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE-cCCC----CCHHHhc
Confidence 34689999999999888752 12234579999999999999999999877644322 11 1111 1111111
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH------HHHHhcCCCCC--------------C-CCceEE
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ------LESLIGSLDWL--------------T-PVSRII 196 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~--------------~-~g~~il 196 (689)
..- ....+ .........+.. .....-+++||+++.... ...++..+... . ...-+|
T Consensus 393 g~~-~~~~g-~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 393 GHR-RTYIG-SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred cch-hccCC-CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 100 00000 011112222222 222334788999954321 24444433210 1 223344
Q ss_pred eeccchhhhh-hcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 197 ITTRNKQVLR-NWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 197 iTtR~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.|+....+.. ..+...++++.+++.++-.++...+.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5554432221 13344689999999999998887776
No 202
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0047 Score=62.51 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeec-cchhhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCC
Q 048627 163 RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-RNKQVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHP 238 (689)
Q Consensus 163 ~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTt-R~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 238 (689)
++.-++|+|+++... ....|+..+..-.+++.+|++| +...+++. ....+.+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 445588899997643 4566666665556666655554 54555544 3345789999999999999887652 11
Q ss_pred ChhHHHHHHHHHHHhCCCchhHHH
Q 048627 239 DVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 239 ~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
+ ...++..++|.|.....
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHH
Confidence 1 22357788999974433
No 203
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00036 Score=67.84 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=29.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+..-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567889999999999999999999874444555554
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0019 Score=59.67 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCcccchhhHHHHHHhhc--CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHH
Q 048627 63 NQLVGVESTVEEIESLLG--VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKL 140 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~--~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (689)
..++|.|...+.+.+-.. ...-....|.+||..|.|||.|++++.+.+.+.+-..+=|+ ..+- .++..+.+++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~dl-~~Lp~l~~~L 134 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KEDL-ATLPDLVELL 134 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHHH-hhHHHHHHHH
Confidence 468999998888765432 12223456889999999999999999999887765544333 1111 2222222221
Q ss_pred HHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC---ChHHHHHHhcCCCC---CCCCceEEeeccch
Q 048627 141 LLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT---CFTQLESLIGSLDW---LTPVSRIIITTRNK 202 (689)
Q Consensus 141 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~---~~~g~~iliTtR~~ 202 (689)
+..+.|++|..||.. .......+...+.. ..|...++..|.++
T Consensus 135 -------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 135 -------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 123789999999993 33345555555432 23344445445444
No 205
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.0015 Score=64.35 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.5
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
-++++..++.. .+.|.|.|++|+|||++|+.+++...
T Consensus 10 l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34445555532 23567999999999999999998654
No 206
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=1.9e-05 Score=73.63 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=110.8
Q ss_pred cCCceeeecCCCCcc-----ccCcccccCccchhhccccCcc--ccccCC-----CCCCCCCCCcccEEeccCCCCCccc
Q 048627 476 AEKLVFLEVPDNNIE-----QLGDCVKHYSKLNRIIHAACNK--LIAKTP-----NPTLMPRLNKLVFLNLRGSKSLKSL 543 (689)
Q Consensus 476 ~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~l~l~~~~~--l~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~ 543 (689)
+..+..+++++|.|. .+...+.+-++|+..+++.-.- ....++ ....+.++++|+..+|++|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455677777777664 3444555566666665554210 000010 0123567789999999999887777
Q ss_pred Ccc----CCCCCCCCEEeccCCCCCCCCCCC----------------CcCCCcEEEcccccccccCc-----ccccCCCC
Q 048627 544 PSE----IFNLEFLTKLDLSGCSKLKRLPEI----------------SSGNISWLLLRGSAIEELPS-----SIERQLRL 598 (689)
Q Consensus 544 p~~----l~~l~~L~~L~l~~~~~l~~~p~~----------------~~~~L~~L~l~~~~l~~l~~-----~i~~l~~L 598 (689)
|+. ++.-+.|.+|.+++|+. +.+... .-+.|+......|.+..-|. .+..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 754 45678899999998863 221110 01345566666665543322 23333566
Q ss_pred CEEecCCCCCCCC-----CCcccCCCCCccEEEeecCCCCCc----cCcccCCCCCCCEEEccCCCCc-----cccchhh
Q 048627 599 SWLDLTDCKMFKS-----LPSSLCKLKSLGVLDLHGCSNLRR----LPECLGQLSSPILLNLAETNIE-----RIPKSII 664 (689)
Q Consensus 599 ~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~-----~lp~~~~ 664 (689)
+.+.+..|.+-.. +-.++..+.+|++|+|..|..+.. +...+...+.|++|.+..|-++ ++-..+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 7777766655211 111344556777777776654321 2233444555677777666654 1222221
Q ss_pred --ccCCCcEEecCCCCCC
Q 048627 665 --QLFMLRYLLLNCSEGH 680 (689)
Q Consensus 665 --~l~~L~~L~l~~~~~l 680 (689)
..|+|..|...+|..-
T Consensus 268 e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 268 EKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhcCCCccccccchhhhc
Confidence 2456666666665543
No 207
>PLN03194 putative disease resistance protein; Provisional
Probab=97.41 E-value=0.00022 Score=63.62 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=41.0
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCccCC-CchhHHHHHHHHHHHhhccc
Q 048627 7 KENTEKLQSWRNALKEAASLSGFHSLN-MRRESELINEVVNHILKRLD 53 (689)
Q Consensus 7 ~~~~~~~~~w~~al~~~~~~~~~~~~~-~~~~~~~~~~i~~~v~~~~~ 53 (689)
..+.+++++||+||+++++++|++... .++|++.+++|++.|.+++-
T Consensus 131 ~~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 131 TCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLI 178 (187)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999987543 57899999999999998876
No 208
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.41 E-value=0.0083 Score=61.49 Aligned_cols=46 Identities=15% Similarity=0.398 Sum_probs=37.4
Q ss_pred chhhHHHHHHhhcCCC-CCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 68 VESTVEEIESLLGVES-KDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 68 r~~~~~~l~~~l~~~~-~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
|+.-.+.|.+.+...+ ..+.+|+|.|.-|+|||++.+.+...+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3455677777776443 678899999999999999999999988766
No 209
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.41 E-value=0.00086 Score=76.57 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCcccchhhHHHHHHhhc----CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 63 NQLVGVESTVEEIESLLG----VESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
..++|.+...+.+.+++. ......+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 357899988888887664 1222345789999999999999999999876544
No 210
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.0024 Score=72.53 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=38.9
Q ss_pred CCCcccchhhHHHHHHhhcC------CCCC-eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 62 KNQLVGVESTVEEIESLLGV------ESKD-VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~------~~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...++|.+..++.+.+.+.. ..+. ..++.++|++|+|||++|+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 45688999999888887752 1122 34688999999999999999998874
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=68.65 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 62 KNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
..++=|.+..+.++.+++.. +-..++-|.++|++|+|||.||++++.+..--| +. ++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch--
Confidence 44677899999988887642 112367788999999999999999999875332 22 1100
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--------HH-----HHHHhcCCCC------CCCC
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--------TQ-----LESLIGSLDW------LTPV 192 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~-----~~~l~~~l~~------~~~g 192 (689)
++.....+. .+....+.+.+.-..-+++++||+++-. .+ ...|+...+. .+.+
T Consensus 258 -------eivSGvSGE-SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 -------EIVSGVSGE-SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred -------hhhcccCcc-cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 111111110 1111122233344567899999999531 01 2223332221 1222
Q ss_pred ceEE-eeccchhhhhhc----CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCc
Q 048627 193 SRII-ITTRNKQVLRNW----EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 193 ~~il-iTtR~~~~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 257 (689)
.-|| .|+|...+-..+ .....|.+.--++.+..+++...+-+-.. .+.+ .++|++.+-|.-
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGfV 396 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGFV 396 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCcc
Confidence 2233 244544332222 23457888888888777777666533221 1222 455666666543
No 212
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.38 E-value=0.0014 Score=63.61 Aligned_cols=171 Identities=20% Similarity=0.244 Sum_probs=96.9
Q ss_pred CCCCcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-CCChHHHH
Q 048627 61 NKNQLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-PGGLAWLR 137 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~ 137 (689)
+...++|-.++..++.+++.. ..++...|.|+|+.|.|||+|......+ .+.|.-..+++...+.-+. ---+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 455699999999999988852 1223346789999999999999888777 3334444444333222111 01233444
Q ss_pred HHHHHHhcCCCCC----CcchHHHHHhhc------CCcEEEEEcCCCChH----H--HHHHhcC-CCCCCCCceEEeecc
Q 048627 138 QKLLLNLLKDENV----IPDIDLNFRRLS------RIKILIVFDDVTCFT----Q--LESLIGS-LDWLTPVSRIIITTR 200 (689)
Q Consensus 138 ~~~l~~~~~~~~~----~~~~~~l~~~l~------~~~~LlVlDdv~~~~----~--~~~l~~~-l~~~~~g~~iliTtR 200 (689)
+++..+....... .+....+...|. +.++++|+|+++--. | +-.+... -....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4444444332211 144555555554 346899999886321 1 1122111 112356677789999
Q ss_pred chh-------hhhhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 201 NKQ-------VLRNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 201 ~~~-------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
-.- |-.......++-++.+..++-..+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 642 22223333456666677777777776654
No 213
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00067 Score=65.23 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=28.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh----hccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI----SGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~----~~~f~~~~~~~ 121 (689)
-|+|.++||||.|||+|.+++++.+ .++|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5889999999999999999999984 34555555554
No 214
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0042 Score=66.26 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=84.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
...|.|.|+.|+|||+||+++++.+.. ...++.++++ ..-....+..+++-+-. .+.+.+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C---s~l~~~~~e~iQk~l~~-------------vfse~~~~~ 494 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC---STLDGSSLEKIQKFLNN-------------VFSEALWYA 494 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec---hhccchhHHHHHHHHHH-------------HHHHHHhhC
Confidence 467899999999999999999998763 3334444442 11111234444433321 223445677
Q ss_pred cEEEEEcCCCChH------------HHHHHhcCC----C-CCCCCce--EEeeccchhhhhh-----cCcceEEEcCCCC
Q 048627 165 KILIVFDDVTCFT------------QLESLIGSL----D-WLTPVSR--IIITTRNKQVLRN-----WEVRKIYEVEALE 220 (689)
Q Consensus 165 ~~LlVlDdv~~~~------------~~~~l~~~l----~-~~~~g~~--iliTtR~~~~~~~-----~~~~~~~~l~~L~ 220 (689)
+-+|||||++... ..+.+...+ . ....+.+ +|.|....+.... .-...+..++.+.
T Consensus 495 PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 495 PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 8899999994210 111111111 0 0123333 4455444322211 1223468899999
Q ss_pred HHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-chhHHH
Q 048627 221 YHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV-PLALKV 262 (689)
Q Consensus 221 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 262 (689)
..+..++++... ........ .+...-+..+|+|. |.-+.+
T Consensus 575 ~~~R~~IL~~~~-s~~~~~~~-~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 575 VTRRKEILTTIF-SKNLSDIT-MDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred hhHHHHHHHHHH-Hhhhhhhh-hHHHHHHHHhcCCccchhHHH
Confidence 988888877664 22221111 22233377778774 444433
No 215
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0019 Score=66.25 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=82.1
Q ss_pred CcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---------------------cceEEeee
Q 048627 64 QLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF---------------------EGTCFLEN 122 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 122 (689)
.++|.+....++..+.......+..+.++|++|+||||+|..+++.+.... +.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467788888888888763333455699999999999999999999865322 22222221
Q ss_pred ccchhcCCCC---hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH--HHHHhcCCCCCCCCceEEe
Q 048627 123 VRVESQRPGG---LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ--LESLIGSLDWLTPVSRIII 197 (689)
Q Consensus 123 ~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~~ili 197 (689)
+.. .. .....+++........ ..++.-++++|+++.... ..++...+......+++|+
T Consensus 82 ----s~~-~~~~i~~~~vr~~~~~~~~~~------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 ----SDL-RKIDIIVEQVRELAEFLSESP------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ----ccc-CCCcchHHHHHHHHHHhccCC------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 111 11 2233333333322211 035677899999987543 4555555544566777877
Q ss_pred eccch-hhhhh-cCcceEEEcCCCCH
Q 048627 198 TTRNK-QVLRN-WEVRKIYEVEALEY 221 (689)
Q Consensus 198 TtR~~-~~~~~-~~~~~~~~l~~L~~ 221 (689)
+|... .+... ......+++.+.+.
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EcCChhhccchhhhcceeeecCCchH
Confidence 77643 33332 22335667666333
No 216
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00056 Score=64.13 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=62.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEe-eeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL-ENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
..|.|+|+.|+||||++..+...+.......++. .+-.+... .... .+..+...........+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~~----~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESKR----SLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCcc----ceeeecccCCCccCHHHHHHHHhcCCc
Confidence 4689999999999999999888876543333332 21111000 0000 011110001112234556677777677
Q ss_pred EEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhh
Q 048627 166 ILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVL 205 (689)
Q Consensus 166 ~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~ 205 (689)
=.+++|++.+.+.....+... ..|..++.|+-...+.
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 799999998877655544331 3455677777655443
No 217
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.00033 Score=66.34 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=31.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
+-.++|.|.+|+||||+++.+.......|..++.++.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 3357799999999999999999999999977766653
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0046 Score=62.64 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=28.9
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4589999999999999999999988765433444444
No 219
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0011 Score=70.71 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=45.0
Q ss_pred CCCcccchhhHHHHHHhhc----CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 62 KNQLVGVESTVEEIESLLG----VESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
.+.-+|.++..++|.+.+. .++-+.++++.+|++|+|||.+|+.++..+...|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4568999999999999885 3445678999999999999999999999886665
No 220
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.30 E-value=0.00065 Score=62.93 Aligned_cols=128 Identities=17% Similarity=0.123 Sum_probs=61.4
Q ss_pred chhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH--hhccccceEEeeeccchhcC----CCChHH----HH
Q 048627 68 VESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK--ISGDFEGTCFLENVRVESQR----PGGLAW----LR 137 (689)
Q Consensus 68 r~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~----~~~~~~----l~ 137 (689)
+..+.....+.+. ...++.+.|++|.|||.||.+.+.+ ..++|+..++....-+.... +.+... ..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344445555553 3458899999999999999999876 34677777777644322111 011110 01
Q ss_pred HHHHHHhcCCCCCCcchHHHHH----------hhcCC---cEEEEEcCCCC--hHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 138 QKLLLNLLKDENVIPDIDLNFR----------RLSRI---KILIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~----------~l~~~---~~LlVlDdv~~--~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
.-+...+..- ......+.+.+ +++++ ..++|+|++.+ ..++..++.. .+.+|+++++--..
T Consensus 81 ~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 1111111111 01122222221 23333 46999999965 4567777666 57899999997655
Q ss_pred h
Q 048627 203 Q 203 (689)
Q Consensus 203 ~ 203 (689)
+
T Consensus 157 Q 157 (205)
T PF02562_consen 157 Q 157 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 221
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.28 E-value=0.00077 Score=65.26 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=56.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC-------CCCCC-------
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK-------DENVI------- 151 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~------- 151 (689)
-..++|.|.+|+||||||+.+++.++.+|+..+++..+++.. ..+..+.+.+...-.. ...+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346889999999999999999999887887777776554432 3445555555432111 00111
Q ss_pred --cchHHHHHhh---cCCcEEEEEcCCCChH
Q 048627 152 --PDIDLNFRRL---SRIKILIVFDDVTCFT 177 (689)
Q Consensus 152 --~~~~~l~~~l---~~~~~LlVlDdv~~~~ 177 (689)
...-.+-+++ +++++|+++||+....
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 1111222333 3899999999985543
No 222
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=9e-06 Score=67.72 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=52.5
Q ss_pred cccEEeccCCCCCcccCcc---CCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccc-cCCCCCEEec
Q 048627 528 KLVFLNLRGSKSLKSLPSE---IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIE-RQLRLSWLDL 603 (689)
Q Consensus 528 ~L~~L~l~~~~~~~~~p~~---l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~-~l~~L~~L~l 603 (689)
.+..++|+.|. +..+++. +.....|...+|++|. +..+|..+. +++.++.|++
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~----------------------fk~fp~kft~kf~t~t~lNl 84 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG----------------------FKKFPKKFTIKFPTATTLNL 84 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch----------------------hhhCCHHHhhccchhhhhhc
Confidence 35566777666 3434432 2333444555555544 444444332 2234555555
Q ss_pred CCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccch
Q 048627 604 TDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKS 662 (689)
Q Consensus 604 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~ 662 (689)
++|.+ ..+|..+..++.|+.|+++.|.. ...|..+..+.+|-.|+.-+|....+|..
T Consensus 85 ~~nei-sdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 85 ANNEI-SDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred chhhh-hhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 55544 44555555555555555555332 23333344455555555555554444433
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0026 Score=70.02 Aligned_cols=150 Identities=12% Similarity=0.162 Sum_probs=85.1
Q ss_pred CCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-cc-----ceEEeeeccchhcC---CCC
Q 048627 62 KNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FE-----GTCFLENVRVESQR---PGG 132 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~---~~~ 132 (689)
-+.++||+.|+.++.+.|.......+ .++|.+|+|||++|.-++.++.+. -+ ..++.-++...-.. ..+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 34689999999999999974333322 378999999999999999986432 21 12222211110000 011
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhhc-CCcEEEEEcCCCChH----------HHHHH-hcCCCCCCCCceEEeecc
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRLS-RIKILIVFDDVTCFT----------QLESL-IGSLDWLTPVSRIIITTR 200 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~----------~~~~l-~~~l~~~~~g~~iliTtR 200 (689)
+. +....+.+.++ .++++|++|.++... +...+ .+.+. .+.--.|-.||-
T Consensus 247 FE-----------------eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~ 308 (786)
T COG0542 247 FE-----------------ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTL 308 (786)
T ss_pred HH-----------------HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccH
Confidence 22 22222222222 448999999985321 12222 22222 122234556665
Q ss_pred chhh------hhhcCcceEEEcCCCCHHHHHHHHHHh
Q 048627 201 NKQV------LRNWEVRKIYEVEALEYHHALELFSRH 231 (689)
Q Consensus 201 ~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 231 (689)
++.- +......+.+.+...+.+++...++-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 5522 111234578999999999999888644
No 224
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.00011 Score=81.49 Aligned_cols=130 Identities=20% Similarity=0.197 Sum_probs=90.7
Q ss_pred CCCCCEEeccCCCCCCCCC----CCCcCCCcEEEccccccc--ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCcc
Q 048627 550 LEFLTKLDLSGCSKLKRLP----EISSGNISWLLLRGSAIE--ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLG 623 (689)
Q Consensus 550 l~~L~~L~l~~~~~l~~~p----~~~~~~L~~L~l~~~~l~--~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 623 (689)
-.+|++|++++......-. ...+++|+.|.+.+-.+. ++.....++++|..||+|++++ ..+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHH
Confidence 4579999999844332111 112478999999886654 3344456789999999999987 444 7899999999
Q ss_pred EEEeecCCCCC-ccCcccCCCCCCCEEEccCCCCccccc-------hhhccCCCcEEecCCCCCCC
Q 048627 624 VLDLHGCSNLR-RLPECLGQLSSPILLNLAETNIERIPK-------SIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 624 ~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp~-------~~~~l~~L~~L~l~~~~~l~ 681 (689)
+|.+.+-.... ..-..+-+|++|+.||+|......-+. +-..||+|+.|+.++....+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99987633322 122356679999999999865442221 22348999999999876543
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.25 E-value=0.0007 Score=67.69 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=36.5
Q ss_pred cchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 67 GVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++....+...+++..- ....+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3444444444455311 113457889999999999999999999765544555655
No 226
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0011 Score=66.77 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc-ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE-GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI 151 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 151 (689)
.++.+.+..-. ....++|+|.+|+|||||++.+++.+....+ ..+++..+ ......+.++.+.+...+.....+.
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34555554222 2235689999999999999999998765443 32333332 3333566777777766655432221
Q ss_pred ---c------chHHHHHhh--cCCcEEEEEcCCCCh
Q 048627 152 ---P------DIDLNFRRL--SRIKILIVFDDVTCF 176 (689)
Q Consensus 152 ---~------~~~~l~~~l--~~~~~LlVlDdv~~~ 176 (689)
. ......+++ ++++++||+|++...
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 111111122 489999999999543
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.23 E-value=0.00043 Score=69.43 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHHhhcCC----CCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 64 QLVGVESTVEEIESLLGVE----SKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~----~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988632 234688999999999999999999988643
No 228
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.0014 Score=61.46 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998854
No 229
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.21 E-value=0.0045 Score=71.22 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=39.7
Q ss_pred CCCcccchhhHHHHHHhhcCC------CCC-eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 62 KNQLVGVESTVEEIESLLGVE------SKD-VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~------~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...++|.+..++.+...+... .+. ..++.++|++|+|||++|+.+++.+...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 446899999998888877521 122 2478899999999999999999876433
No 230
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0047 Score=57.73 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCcccchhhHHH---HHHhhcC----CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 63 NQLVGVESTVEE---IESLLGV----ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 63 ~~~vGr~~~~~~---l~~~l~~----~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
++.||.+....+ |.+.|.. +.-.++.|..+|++|.|||.+|+++++..+--| ..+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---l~vk-----------a-- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---LLVK-----------A-- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---EEec-----------h--
Confidence 467888866543 4455532 123488999999999999999999998765321 1111 0
Q ss_pred HHHHHHHHhcCCCCCCcchH-HHHHhhcCCcEEEEEcCCCC--------------hHHHHHHhcCCCCC--CCCceEEee
Q 048627 136 LRQKLLLNLLKDENVIPDID-LNFRRLSRIKILIVFDDVTC--------------FTQLESLIGSLDWL--TPVSRIIIT 198 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~--------------~~~~~~l~~~l~~~--~~g~~iliT 198 (689)
.+++..-.+ +....+. .....-+.-++++.+|.++- .+...+|+..++.. +.|...|-.
T Consensus 185 --t~liGehVG--dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 185 --TELIGEHVG--DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred --HHHHHHHhh--hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 011111111 0011111 12222335689999998853 22345566555422 345444555
Q ss_pred ccchhhhhh---cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 199 TRNKQVLRN---WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 199 tR~~~~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
|.....+.. -.....++..--+++|..+++..++-.-.-+. ....+.++++.+|..
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 554443322 12335677777888999998888872211111 112556666676654
No 231
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0043 Score=65.82 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=94.8
Q ss_pred cccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCCh
Q 048627 65 LVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 133 (689)
+=|.++...+|.+.... +-..++-|.+||+||+|||++|+.+++.-+-.|-.+ ....-.+.....-
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---kgpEL~sk~vGeS 512 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---KGPELFSKYVGES 512 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---cCHHHHHHhcCch
Confidence 33477666667654431 224578899999999999999999999876655322 0000000000112
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------------HHHHHhcCCCCCCCCceEEe---
Q 048627 134 AWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------------QLESLIGSLDWLTPVSRIII--- 197 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~g~~ili--- 197 (689)
++..++++.+ .-+.-+.++.||+++... .+..++..++.......|+|
T Consensus 513 Er~ir~iF~k----------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 513 ERAIREVFRK----------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred HHHHHHHHHH----------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 2233333322 223445888999885321 24445555543333333433
Q ss_pred eccchhhhhh-c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 198 TTRNKQVLRN-W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 198 TtR~~~~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
|-|...+-.. + ..+..+.++.-+.+...++|..++-+-...+. -...++++++.|.--|
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYSGA 639 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCChH
Confidence 2233322221 2 24578899999999999999998733222111 1245566666666543
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0024 Score=70.34 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=76.0
Q ss_pred CCCcccchhhHHHHHHhhcC-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChH
Q 048627 62 KNQLVGVESTVEEIESLLGV-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 134 (689)
...++|.+..+..+.+.+.. ......+....||.|||||-||+.++..+-+.=+..+-++ .++.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy-------- 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY-------- 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHH--------
Confidence 35689999999999888751 1223467778999999999999999998754323333332 2221
Q ss_pred HHHHHHHHHhcCCCCCC---cchHHHHHhhcCCcE-EEEEcCCCC--hHHHHHHhcCCCC
Q 048627 135 WLRQKLLLNLLKDENVI---PDIDLNFRRLSRIKI-LIVFDDVTC--FTQLESLIGSLDW 188 (689)
Q Consensus 135 ~l~~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~-LlVlDdv~~--~~~~~~l~~~l~~ 188 (689)
.-+.....+.+.++.. +.--.+-+..+.++| +|.||+++. .+...-|++.+..
T Consensus 561 -~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 561 -MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2233445555554443 335566677778877 777999964 4456666666543
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.017 Score=58.41 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCC
Q 048627 164 IKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPD 239 (689)
Q Consensus 164 ~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 239 (689)
++-++|+|+++.. .....++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~- 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA- 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC-
Confidence 3445566888643 233333333332234566777776653 3333 2334678999999999998886542 11
Q ss_pred hhHHHHHHHHHHHhCCCchh
Q 048627 240 VGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 240 ~~~~~~~~~i~~~~~g~Pla 259 (689)
. . . ..+..++|-|+.
T Consensus 188 ~--~--~-~~l~~~~g~p~~ 202 (325)
T PRK08699 188 E--P--E-ERLAFHSGAPLF 202 (325)
T ss_pred c--H--H-HHHHHhCCChhh
Confidence 1 1 1 113567898854
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.20 E-value=0.00034 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 235
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.20 E-value=3.4e-05 Score=64.40 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=79.8
Q ss_pred EEEcccccccccCc---ccccCCCCCEEecCCCCCCCCCCcccCC-CCCccEEEeecCCCCCccCcccCCCCCCCEEEcc
Q 048627 577 WLLLRGSAIEELPS---SIERQLRLSWLDLTDCKMFKSLPSSLCK-LKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLA 652 (689)
Q Consensus 577 ~L~l~~~~l~~l~~---~i~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 652 (689)
.++|+.|.+-.++. .+.....|...++++|.+ ..+|..+.. .+.++.|++++| .+..+|+.+..++.|+.|+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 44455555444443 345556788889999987 777776664 458999999984 567899999999999999999
Q ss_pred CCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 653 ETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 653 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
.|++...|..+..|.+|-.|+.-+|....
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 99999999888888888888888776653
No 236
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.00061 Score=65.35 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=37.7
Q ss_pred cchhhHHHHHHhhcC-CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 67 GVESTVEEIESLLGV-ESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~-~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.|++.+++|.+.+.. ..+.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 366677777777653 34568899999999999999999999988644
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00042 Score=59.81 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
.-|+|+|++|+||||+++.+++.+++. |...-|++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 458899999999999999999997765 65444443
No 238
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.19 E-value=0.011 Score=61.46 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=28.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
.+.+|.++|++|+||||+|.+++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999998876543333433
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.0071 Score=63.36 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
.+.+|.++|++|+||||.|..++..+......+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 478999999999999999999998876543333433
No 240
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.019 Score=62.98 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred CCCCCcccchhhHHHHHH---hhcC-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC
Q 048627 60 DNKNQLVGVESTVEEIES---LLGV-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR 129 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~---~l~~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 129 (689)
....++.|.|+..++|.+ .|.. +..-++=|.++|++|.|||-||++++-.-. +-|+. ++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH
Confidence 345578888876665555 4431 122367788999999999999999997642 22333 1111
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCC-----------------hHHHHHHhcCCCCCCCC
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTC-----------------FTQLESLIGSLDWLTPV 192 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----------------~~~~~~l~~~l~~~~~g 192 (689)
++.+-..+.. ....-+.....-...+.++.+|+++. ...+..++...+.+..+
T Consensus 379 ---------EFvE~~~g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ---------EFVEMFVGVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---------HHHHHhcccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1111111111 00111111222235678888888742 12356666666555444
Q ss_pred ceE--Eeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 193 SRI--IITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 193 ~~i--liTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
..| +-+|...+++.. -..+..+.++.-+.....++|..++...... .+..++.+ ++...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 433 444554444322 1234678888889999999999998544332 33455566 99999998866
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.002 Score=59.96 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+++|.++|+.|+||||.+.+++.++..+-..+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 478999999999999999999988765544555555
No 242
>PRK04132 replication factor C small subunit; Provisional
Probab=97.14 E-value=0.01 Score=66.85 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=89.7
Q ss_pred EEe--cCCCCHHHHHHHHHHHhhc-cccc-eEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 91 IWG--IGGIGKTTIARAIFDKISG-DFEG-TCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 91 I~G--~gGiGKTtLa~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
+.| |.|+||||+|..+++++-+ .+.. .+.+. .+.. .+...+. ++.......... -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~-rgid~IR-~iIk~~a~~~~~----------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDE-RGINVIR-EKVKEFARTKPI----------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCc-ccHHHHH-HHHHHHHhcCCc----------CCCCCE
Confidence 347 8899999999999998633 2322 23333 1211 2333333 332222211000 012457
Q ss_pred EEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccch-hhhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhH
Q 048627 167 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGY 242 (689)
Q Consensus 167 LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~ 242 (689)
++|+|+++... ...+|+..+......+++|+++.+. .+... ......+.+.+++.++....+...+...+.. -.
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~ 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LT 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CC
Confidence 99999998754 4566666655445567776665554 33322 2345789999999999988877665322211 12
Q ss_pred HHHHHHHHHHhCCCchhH
Q 048627 243 EKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 243 ~~~~~~i~~~~~g~Plal 260 (689)
.+....|++.++|.+...
T Consensus 711 ~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 456888999999988643
No 243
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.13 E-value=0.0026 Score=73.17 Aligned_cols=116 Identities=14% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCCcccchhhHHHHHHhhcC------CCCC-eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChH
Q 048627 62 KNQLVGVESTVEEIESLLGV------ESKD-VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~------~~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 134 (689)
...++|.+..++.+...+.. ..+. ..++.++|++|+|||+||+.+++.+-..-...+.+. ..+.... +.+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~-~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEK-HTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhcccc-ccHH
Confidence 45789999999999887741 1122 346778999999999999999988643322223332 2222111 2222
Q ss_pred HHHHHHHHHhcCCC---CCCcchHHHHHhhcCCc-EEEEEcCCCCh--HHHHHHhcCCC
Q 048627 135 WLRQKLLLNLLKDE---NVIPDIDLNFRRLSRIK-ILIVFDDVTCF--TQLESLIGSLD 187 (689)
Q Consensus 135 ~l~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~l~ 187 (689)
. +.+.. ........+.+.+..++ -+++||+++.. ..+..|+..+.
T Consensus 586 ~--------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 586 K--------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred H--------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 11111 11122234445555554 58889999753 33555555443
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.00098 Score=58.66 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 245
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.12 E-value=0.0028 Score=72.62 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=40.2
Q ss_pred CCCcccchhhHHHHHHhhcC-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 62 KNQLVGVESTVEEIESLLGV-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...++|.+..++.+.+.+.. ......++.++|++|+|||.+|+.++..+.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 35789999999998887741 11223578899999999999999999886543
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.08 E-value=0.0019 Score=74.56 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCCcccchhhHHHHHHhhcCC------CCC-eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 62 KNQLVGVESTVEEIESLLGVE------SKD-VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~------~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
...++|.+..++.+...+... .+. ..++.++|++|+|||++|+.++..+...-...+.+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 356899999999998887521 112 35788999999999999999998865443333333
No 247
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.014 Score=55.70 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=93.7
Q ss_pred CCCcccchhhHHHHHHhhc----------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 62 KNQLVGVESTVEEIESLLG----------VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~----------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
=+.+-|.+...+.|.+... .....-+-|.++|++|.||+-||++|+......| .+ ++..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSSS-- 200 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSSS-- 200 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eehH--
Confidence 3467788888888887542 2223357899999999999999999998754332 22 1111
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHH-hhcCCcEEEEEcCCCC---------hHHHHHHhcC-------CCCCCCCce
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFR-RLSRIKILIVFDDVTC---------FTQLESLIGS-------LDWLTPVSR 194 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~---------~~~~~~l~~~-------l~~~~~g~~ 194 (689)
++...++.. .+.....+-+ .-++++-+|.+|.++. .+....+... ......|.-
T Consensus 201 ---DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 201 ---DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred ---HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 122221110 0111111111 1247889999999953 1112222111 111234555
Q ss_pred EEeeccchhhhhh---cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 195 IIITTRNKQVLRN---WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 195 iliTtR~~~~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
|+-.|..+.++.. -.....|-++--+......+|.-+.+.. +...-++..+++.++..|..-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCCc
Confidence 5666666655433 1223345454444444556777776332 222334456777788887654
No 248
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.06 E-value=0.0078 Score=61.24 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
+.++|+...+.++.+.+..-.....-|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999888877633333446789999999999999988754
No 249
>PRK07667 uridine kinase; Provisional
Probab=97.04 E-value=0.0013 Score=61.31 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
++.+.+.+........+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555565445566899999999999999999999987654
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.03 E-value=0.00035 Score=61.29 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 66 VGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 66 vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777788888777753333445678999999999999998887643
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.015 Score=58.75 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
++.+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887654
No 252
>PRK04296 thymidine kinase; Provisional
Probab=97.02 E-value=0.001 Score=61.89 Aligned_cols=107 Identities=13% Similarity=-0.035 Sum_probs=57.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCC------CCCcchHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDE------NVIPDIDLNFRR 160 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~~~~l~~~ 160 (689)
.++.|+|+.|.||||+|..++.+...+...++++... .... .....+ ...+...- ...+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~-~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDR-YGEGKV----VSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccc-ccCCcE----ecCCCCcccceEeCChHHHHHHHHh-
Confidence 4678999999999999999999876554444444210 0111 111111 11111100 00112222222
Q ss_pred hcCCcEEEEEcCCCC--hHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 161 LSRIKILIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 161 l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
..++.-+||+|.+.- .++..++...+. ..|..|++|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 223455899999954 233444433322 46788999998853
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.01 E-value=0.0035 Score=60.37 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
.|.+.|..+-....++.|+|.+|+|||++|.+++.........++|++.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3555554343446789999999999999999999887656677788873
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.00 E-value=0.0066 Score=65.11 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=42.2
Q ss_pred CCCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 62 KNQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++.-.+.++++..||.. +....+++.++|++|+||||.++.+++.+. |+..-|..
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 33455556778888888863 233457899999999999999999999863 44444543
No 255
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.00 E-value=0.0083 Score=66.91 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=88.5
Q ss_pred CcccchhhHHHHHHhhc---CC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCCh
Q 048627 64 QLVGVESTVEEIESLLG---VE-------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~---~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 133 (689)
.+.|.+...+++.+.+. .. ..-++-|.|+|++|+|||++|+.++......| +.+. ...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~-------- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-------- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH--------
Confidence 35566666655555442 10 11134589999999999999999998765433 1222 000
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCceE
Q 048627 134 AWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----------------QLESLIGSLDWL--TPVSRI 195 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~g~~i 195 (689)
+.... .+. ........+.......+.+|+||+++... .+..++..+..+ ..+.-+
T Consensus 221 --~~~~~----~g~-~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 221 --FVEMF----VGV-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred --hHHhh----hcc-cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 00000 000 00011111222233567899999986431 123333333322 223445
Q ss_pred Eeeccchhhhhh--c---CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCc
Q 048627 196 IITTRNKQVLRN--W---EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 196 liTtR~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 257 (689)
|.||...+.... . .....+.++..+.++..+++..+...... ++.. ...+++.+.|..
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~s 357 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFS 357 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCCC
Confidence 556765543321 1 23467889999999999998887633221 1111 334566666644
No 256
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.99 E-value=0.0016 Score=57.69 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=60.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhc----CC------CCCC-----
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL----KD------ENVI----- 151 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~------~~~~----- 151 (689)
..|-|++..|.||||+|...+-+...+-..+.++....... . .+.....+.+ ..+. +. ....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888999999999999988655544555544333321 1 2233333332 0000 00 0000
Q ss_pred --cchHHHHHhhcC-CcEEEEEcCCCCh-----HHHHHHhcCCCCCCCCceEEeeccch
Q 048627 152 --PDIDLNFRRLSR-IKILIVFDDVTCF-----TQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 152 --~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
...+..++.+.. .-=|+|||++-.. -..+.+...+....++..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122233334443 3459999998322 12333333333345677899999986
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.99 E-value=0.0025 Score=57.80 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=27.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++.|+|++|+||||+|..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999998766555666665
No 258
>PTZ00494 tuzin-like protein; Provisional
Probab=96.98 E-value=0.13 Score=52.54 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=102.5
Q ss_pred HHHHHHHhhccccc----ccccCCCCCcccchhhHHHHHHhhcCC-CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccc
Q 048627 42 NEVVNHILKRLDEV----FQLRDNKNQLVGVESTVEEIESLLGVE-SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEG 116 (689)
Q Consensus 42 ~~i~~~v~~~~~~~----~~~~~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 116 (689)
+-.++..++..+.. ...+..+..+|.|+.|-..+.+.|... ...+++++++|.-|+||++|.+.....-. -.
T Consensus 346 ~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~p 422 (664)
T PTZ00494 346 RTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VA 422 (664)
T ss_pred HHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CC
Confidence 34445555554411 123456778999999999999988743 34689999999999999999998776432 45
Q ss_pred eEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC--cchHHH-------HHhhcCCcEEEEEc--CCCChHH-HHHHhc
Q 048627 117 TCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI--PDIDLN-------FRRLSRIKILIVFD--DVTCFTQ-LESLIG 184 (689)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~l-------~~~l~~~~~LlVlD--dv~~~~~-~~~l~~ 184 (689)
.+|++ ++. .++.++.+.+.+.-...+. +..+.+ +....++.-+||+- +-.+..- ..+. .
T Consensus 423 aV~VD-VRg-------~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-v 493 (664)
T PTZ00494 423 LVHVD-VGG-------TEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-V 493 (664)
T ss_pred eEEEE-ecC-------CcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-H
Confidence 56666 222 2233455556665544332 222222 22344555555543 3222221 1111 1
Q ss_pred CCCCCCCCceEEeeccchhhhh---hcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 185 SLDWLTPVSRIIITTRNKQVLR---NWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 185 ~l~~~~~g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.+.....-|.|++.---+..-. .+..-..|.+++|+.++|.++..+..
T Consensus 494 aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 494 SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 1122233466666544432211 13344689999999999999876554
No 259
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.026 Score=53.52 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=118.1
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc------cccceEEeeeccc------hh---
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG------DFEGTCFLENVRV------ES--- 127 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~--- 127 (689)
+.+.++++....+.++.. .++.+...+||+.|.||-|.+..+.+++-+ +-+...|.+.... ++
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777777777777664 455788899999999999999999988532 1222333321111 01
Q ss_pred -------cCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE-EEEEcCCCCh--HHHHHHhcCCCCCCCCceEEe
Q 048627 128 -------QRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI-LIVFDDVTCF--TQLESLIGSLDWLTPVSRIII 197 (689)
Q Consensus 128 -------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~g~~ili 197 (689)
+....-+.+.++++.+...... +... ..+.| ++|+-.+++. +.-.++..........+|+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~q-------ie~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQ-------IETQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcc-------hhhc-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 1101123444455554433210 0011 12233 5666666542 222333333333456677766
Q ss_pred eccch--hhhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhc--C----
Q 048627 198 TTRNK--QVLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLY--K---- 269 (689)
Q Consensus 198 TtR~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~--~---- 269 (689)
.-.+. -+.+.-...-.++++..+++|....+...+-.++-.-+ .+.+.+|+++++|+-.-.-.+....+ +
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 53322 12222223346899999999999998887744443322 67899999999997653333333322 1
Q ss_pred -----CCHHHHHHHHHHHHh
Q 048627 270 -----REKEVWESAINKLQR 284 (689)
Q Consensus 270 -----~~~~~~~~~l~~l~~ 284 (689)
-+..+|+-++.+...
T Consensus 241 a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccCCCCCCccHHHHHHHHHH
Confidence 135689988887543
No 260
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00038 Score=66.05 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=104.7
Q ss_pred eeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCC--CCCCCCC-CcCC
Q 048627 402 IEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPL--KSLPSNL-SAEK 478 (689)
Q Consensus 402 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~--~~lp~~~-~~~~ 478 (689)
++.+.+..+...+..-....+.+|+.|++|+++.|.+... ++.+| +...+|+.+-+.|..+ +..-+.. .++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3444444444444444456678999999999998887665 67776 6667888888887653 3333333 4566
Q ss_pred ceeeecCCCCccccC---cccccCc-cchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCC
Q 048627 479 LVFLEVPDNNIEQLG---DCVKHYS-KLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLT 554 (689)
Q Consensus 479 L~~L~l~~~~i~~l~---~~~~~l~-~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 554 (689)
+++|+++.|.+.++- +++.... .++++.+..|. ..+-++-|.... .++++.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~------------------~~~w~~~~~l~r-------~Fpnv~ 202 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL------------------EQLWLNKNKLSR-------IFPNVN 202 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcH------------------HHHHHHHHhHHh-------hcccch
Confidence 777777777554321 1111111 12222222211 111111111111 234445
Q ss_pred EEeccCCCC--------CCCCCCCCcCCCcEEEcccccccccC--cccccCCCCCEEecCCCCCCCCCCc------ccCC
Q 048627 555 KLDLSGCSK--------LKRLPEISSGNISWLLLRGSAIEELP--SSIERQLRLSWLDLTDCKMFKSLPS------SLCK 618 (689)
Q Consensus 555 ~L~l~~~~~--------l~~~p~~~~~~L~~L~l~~~~l~~l~--~~i~~l~~L~~L~l~~~~~~~~lp~------~~~~ 618 (689)
.+.+..|+. .+.+ +.+..|.|+.++|.... ..+..++.|+-|.++.+.+...+-. -++.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~-----p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPF-----PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred heeeecCcccchhhcccCCCC-----CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 555544432 2222 23446666667666433 3467788888888888887655443 3567
Q ss_pred CCCccEEEee
Q 048627 619 LKSLGVLDLH 628 (689)
Q Consensus 619 l~~L~~L~l~ 628 (689)
|+++++|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7888888643
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.96 E-value=0.0043 Score=61.04 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=29.6
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+++.++|++|+||||++..++..+...-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999988765533444444
No 262
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.96 E-value=0.019 Score=65.12 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=38.9
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
....++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999888877665323334568899999999999999998764
No 263
>PRK10867 signal recognition particle protein; Provisional
Probab=96.95 E-value=0.017 Score=60.46 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.+.+|.++|++|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999999887655
No 264
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.95 E-value=0.011 Score=60.07 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=35.0
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+||....+.++.+.+..-.....-|.|+|.+|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888777765333334557899999999999999988653
No 265
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.93 E-value=0.0082 Score=65.90 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=40.0
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
....++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45579999999999888775333334467899999999999999998864
No 266
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0039 Score=56.19 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTC 118 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 118 (689)
+.|.++|.+|+||||+|++++..+++.-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 45778999999999999999988766544333
No 267
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0034 Score=70.57 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=39.3
Q ss_pred CCCcccchhhHHHHHHhhcC------CCCC-eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 62 KNQLVGVESTVEEIESLLGV------ESKD-VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~------~~~~-~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...++|.+..++.|.+.+.. ..+. ...+.++|++|+|||.+|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999998887751 1122 35788999999999999999998874
No 268
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.86 E-value=0.011 Score=61.55 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHhhc-----CCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 65 LVGVESTVEEIESLLG-----VESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~-----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+---.+.++++..||. ...-+.+++.|+|++|+||||.++.++..+
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3334456788888886 344457899999999999999999998864
No 269
>PRK08118 topology modulation protein; Reviewed
Probab=96.85 E-value=0.0009 Score=60.70 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc---cccceEE
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG---DFEGTCF 119 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~---~f~~~~~ 119 (689)
.|.|+|++|+||||||+.+++.+.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5789999999999999999998543 3555544
No 270
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.019 Score=58.56 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=81.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
-|-..++||||.|||+++.++++.+. +-+|--...++... . . ++.++.. ...+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n-~---d-Lr~LL~~------------------t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLD-S---D-LRHLLLA------------------TPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCc-H---H-HHHHHHh------------------CCCC
Confidence 35678999999999999999998763 23333322222222 1 1 2222222 2445
Q ss_pred EEEEEcCCCChH--------------------HHHHHhcCC---CCCCCCceE-Eeeccchhhhhh--c---CcceEEEc
Q 048627 166 ILIVFDDVTCFT--------------------QLESLIGSL---DWLTPVSRI-IITTRNKQVLRN--W---EVRKIYEV 216 (689)
Q Consensus 166 ~LlVlDdv~~~~--------------------~~~~l~~~l---~~~~~g~~i-liTtR~~~~~~~--~---~~~~~~~l 216 (689)
-+||++|++..- .+.-|+..+ ...+.+-|| +.||-..+-+.. + ..+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 677888885321 011122222 222223466 556654432211 1 22356888
Q ss_pred CCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhh
Q 048627 217 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFL 267 (689)
Q Consensus 217 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 267 (689)
+-=+.+....|+..+...+. + ..++.+|.+...+.-+.-..++..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 88899999999999874433 2 2345555555556555444444444
No 271
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0018 Score=58.22 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCCEEeccCCCCCCCCCCC-CcCCCcEEEcccccccccCccccc-CCCCCEEecCCCCCC--CCCCcccCCCCCccEEEe
Q 048627 552 FLTKLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEELPSSIER-QLRLSWLDLTDCKMF--KSLPSSLCKLKSLGVLDL 627 (689)
Q Consensus 552 ~L~~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~l~~~i~~-l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l 627 (689)
+...+++++|... .++.. ....|.+|.+++|.|+.+...+.. +++|..|.+.+|++. +.+ ..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 4556666665422 11111 124556666666666655444432 445666666655541 111 12334455555555
Q ss_pred ecCC
Q 048627 628 HGCS 631 (689)
Q Consensus 628 ~~~~ 631 (689)
-+|.
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5543
No 272
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.83 E-value=0.017 Score=57.58 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=34.2
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
+.++=..+....+...+.. .+.|.|.|++|+||||+|+.++..+...|
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3344444455566666632 24588999999999999999999986544
No 273
>PRK07261 topology modulation protein; Provisional
Probab=96.83 E-value=0.0056 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.80 E-value=0.0073 Score=62.10 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.++.+.|..+-....++.|.|.+|+|||||+.+++..+......++|++
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666433334568999999999999999999988766555677776
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.78 E-value=0.029 Score=58.70 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.++.++|++|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999998865
No 276
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.78 E-value=0.0071 Score=58.29 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLEN 122 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~ 122 (689)
.|.++|..+-....++.|+|++|+|||+||.+++....... ..++|+..
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 34555543334467899999999999999999988754444 56677763
No 277
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.77 E-value=0.0022 Score=56.54 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=30.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+|-|+|.+|+||||||+++..++......+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999887766666665
No 278
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.74 E-value=0.0027 Score=62.29 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=65.4
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhc-CCCC
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL-KDEN 149 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~ 149 (689)
.++.+.+++. .....|.|.|+.|+||||++..+...+...-..++.+.+..+... ... .+.. ....
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~ 134 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKA 134 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcC
Confidence 3444555553 223579999999999999999998876542223444433222111 010 0111 1111
Q ss_pred CCcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeecc
Q 048627 150 VIPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTR 200 (689)
Q Consensus 150 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR 200 (689)
.....+.++..++..+=.++++++.+.+....++... ..|..++-|..
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlH 182 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLH 182 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEec
Confidence 2245677778888888899999999988655444332 23444444443
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.70 E-value=0.0061 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 280
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0022 Score=59.02 Aligned_cols=37 Identities=30% Similarity=0.650 Sum_probs=31.8
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999887777777764
No 281
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.69 E-value=0.045 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.122 Sum_probs=33.6
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCCC-hhHHHHHHHHHHHhCCCchhH
Q 048627 213 IYEVEALEYHHALELFSRHAFKRNHPD-VGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 213 ~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal 260 (689)
.+++++++.+|+..++....-..--.. ...+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887763322211 233445667777779999654
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.68 E-value=0.0021 Score=68.06 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=42.4
Q ss_pred CCcccchhhHHHHHHhhc----CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 63 NQLVGVESTVEEIESLLG----VESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.+++|.++.+++|.+.|. ......+++.++||+|+||||||+.+++.+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999999882 233456799999999999999999999876644
No 283
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0021 Score=60.37 Aligned_cols=87 Identities=24% Similarity=0.249 Sum_probs=54.5
Q ss_pred cccCCCCCEEecCCC--CCCCCCCcccCCCCCccEEEeecCCCC--CccCcccCCCCCCCEEEccCCCCccccc----hh
Q 048627 592 IERQLRLSWLDLTDC--KMFKSLPSSLCKLKSLGVLDLHGCSNL--RRLPECLGQLSSPILLNLAETNIERIPK----SI 663 (689)
Q Consensus 592 i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~l~~lp~----~~ 663 (689)
+-.|++|++|.++.| +..+.++....++++|++|++++|.+. .+++ .+..+.+|..|++.+|..+.+-. .+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 345678888888888 666666666666788888888887643 2222 23445667788888876653322 12
Q ss_pred hccCCCcEEecCCCCC
Q 048627 664 IQLFMLRYLLLNCSEG 679 (689)
Q Consensus 664 ~~l~~L~~L~l~~~~~ 679 (689)
.-+++|++|+-.+..-
T Consensus 140 ~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHhhhhccccccccCC
Confidence 3457777776555443
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.016 Score=63.04 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=91.4
Q ss_pred CcccchhhHHHHHHhhc---C--------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCC
Q 048627 64 QLVGVESTVEEIESLLG---V--------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGG 132 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~---~--------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 132 (689)
...|.+...+.+.+... . +-..++.+.++|++|.|||.||+++++.....|-.+..-.. .+.....
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l---~sk~vGe 319 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL---LSKWVGE 319 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH---hccccch
Confidence 44555655555554432 1 12346688999999999999999999976554432211110 0111011
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCCCCCC--ceEEe
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQLESLIGSLDWLTPV--SRIII 197 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~g--~~ili 197 (689)
..+..+++ .....+..+..|.+|+++.. .....++..+...... ..||-
T Consensus 320 sek~ir~~----------------F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 320 SEKNIREL----------------FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred HHHHHHHH----------------HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 12222222 22233467899999999431 1233333333322222 33444
Q ss_pred eccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCC
Q 048627 198 TTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQG 255 (689)
Q Consensus 198 TtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 255 (689)
||-.+..... -.....+.++.-+.++..+.|..+....... ....-..+.+++...|
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 4443322221 1335689999999999999999987433322 0112234455555555
No 285
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.65 E-value=0.027 Score=61.33 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=41.7
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+..++|+...+.++.+.+..-......|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 456799999999998888764444455788999999999999999988643
No 286
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.64 E-value=5.3e-05 Score=75.17 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=96.7
Q ss_pred CCCcccEEeccCCCCCcccCc-c-CCCCCCCCEEeccCCCCCCCCCCC----CcCCCcEEEccccccc---ccCcccccC
Q 048627 525 RLNKLVFLNLRGSKSLKSLPS-E-IFNLEFLTKLDLSGCSKLKRLPEI----SSGNISWLLLRGSAIE---ELPSSIERQ 595 (689)
Q Consensus 525 ~l~~L~~L~l~~~~~~~~~p~-~-l~~l~~L~~L~l~~~~~l~~~p~~----~~~~L~~L~l~~~~l~---~l~~~i~~l 595 (689)
.+..|++|+.++|...+..+- . .....+|+.|-+++|+.+...-.. .+..|+.|++..+... .+..--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 457788888888876543321 1 235678888888888865543321 1246777777665443 243434568
Q ss_pred CCCCEEecCCCCCCCCC-----CcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCC-Cc--cccchhhcc
Q 048627 596 LRLSWLDLTDCKMFKSL-----PSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETN-IE--RIPKSIIQL 666 (689)
Q Consensus 596 ~~L~~L~l~~~~~~~~l-----p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~-l~--~lp~~~~~l 666 (689)
+.|+.|.++.|...... ..+-+.+..|+++.+++|..+.. ..+.+..+++|+.+++-.|. ++ .+-....++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 89999999988664322 44456678899999999987653 44566778899999998875 33 222233566
Q ss_pred CCCcEEe
Q 048627 667 FMLRYLL 673 (689)
Q Consensus 667 ~~L~~L~ 673 (689)
|++++..
T Consensus 452 p~i~v~a 458 (483)
T KOG4341|consen 452 PNIKVHA 458 (483)
T ss_pred ccceehh
Confidence 7766553
No 287
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.63 E-value=0.037 Score=50.05 Aligned_cols=76 Identities=8% Similarity=-0.024 Sum_probs=42.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC--CCCC-cchHHHHHhhcC--
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD--ENVI-PDIDLNFRRLSR-- 163 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~-~~~~~l~~~l~~-- 163 (689)
+.|.|.+|+|||++|.+++.. ....++|+... .. .+. .+.+.+....... .+.. +....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~-~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EA-FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----Cc-CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999999876 22456666522 22 222 2333333322222 2221 444445555432
Q ss_pred CcEEEEEcCC
Q 048627 164 IKILIVFDDV 173 (689)
Q Consensus 164 ~~~LlVlDdv 173 (689)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337889987
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.038 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..++.++|++|+||||+|.+++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.61 E-value=0.0031 Score=61.06 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+.+.|..+-....++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455556444445678999999999999999999776434456677776
No 290
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.61 E-value=0.026 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.|.|.+|+||||+|..++.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 588999999999999999987653
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.006 Score=65.42 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=45.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhc--
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLS-- 162 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~-- 162 (689)
.-+++.++|++|+||||||.-++++.. |. ++=+. .|.. .....+-..+...+... ..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDe-Rt~~~v~~kI~~avq~~-----------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDE-RTAPMVKEKIENAVQNH-----------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----cccc-ccHHHHHHHHHHHHhhc-----------cccccC
Confidence 468999999999999999999988642 11 22222 2222 33444444444443332 2232
Q ss_pred CCcEEEEEcCCCCh
Q 048627 163 RIKILIVFDDVTCF 176 (689)
Q Consensus 163 ~~~~LlVlDdv~~~ 176 (689)
.++..||+|+++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 78899999999753
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.59 E-value=0.0019 Score=55.85 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=20.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 293
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.58 E-value=0.011 Score=52.93 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=60.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC--C------CCCC------
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK--D------ENVI------ 151 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~------~~~~------ 151 (689)
...|-|++..|.||||.|..++.+...+--.++++-...... . .+.....+.+.-.+.. . ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-P-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-c-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 357788888999999999999988655434443333222221 1 2222232222000000 0 0000
Q ss_pred -cchHHHHHhhcCCc-EEEEEcCCCC-----hHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 152 -PDIDLNFRRLSRIK-ILIVFDDVTC-----FTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 152 -~~~~~l~~~l~~~~-~LlVlDdv~~-----~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
...+..++.+...+ =++|||++.. .-..+.+...+....++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233344444444 4999999832 112223333333345677999999976
No 294
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.057 Score=50.57 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=84.5
Q ss_pred CcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCC
Q 048627 64 QLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGG 132 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 132 (689)
.+=|.++.++++.+.+-. +-..++-|.+||++|.|||-+|++.+.+-...|-.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK---------------- 235 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK---------------- 235 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH----------------
Confidence 455788888888876531 11336778899999999999999988764433311
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHhh----cCCcEEEEEcCCCC-------------hH---HHHHHhcCCCCCCCC
Q 048627 133 LAWLRQKLLLNLLKDENVIPDIDLNFRRL----SRIKILIVFDDVTC-------------FT---QLESLIGSLDWLTPV 192 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~-------------~~---~~~~l~~~l~~~~~g 192 (689)
+..--+-+.... +++...+... ...+.+|.+|.++- .+ ..-+++..+..+.+.
T Consensus 236 ---LAgPQLVQMfIG----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 236 ---LAGPQLVQMFIG----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred ---hcchHHHhhhhc----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 000001111110 1222222222 25678888998732 11 133444455544443
Q ss_pred --ceEEeeccchhh-----hhhcCcceEEEcCCCCHHHHHHHHHHhccCC-CCCChhHHHHH
Q 048627 193 --SRIIITTRNKQV-----LRNWEVRKIYEVEALEYHHALELFSRHAFKR-NHPDVGYEKLS 246 (689)
Q Consensus 193 --~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~ 246 (689)
.+||..|..-++ +..-.....++.+--+++....++.-+...- ..++..+++++
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 456655543332 2222334567777666666666665554321 23344555544
No 295
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.56 E-value=0.0023 Score=59.89 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999998644
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.019 Score=59.19 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998765
No 297
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.54 E-value=0.071 Score=56.12 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh--ccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS--GDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 121 (689)
.+++.++|++|+||||++..++..+. .....+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3334555555
No 298
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.017 Score=58.11 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCC-
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENV- 150 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 150 (689)
+.++.+.|-.+--...+|.|-|.+|||||||..+++.++..+. .+.|++.. .+..++.- -...+......
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE-------ES~~Qikl-RA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE-------ESLQQIKL-RADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC-------cCHHHHHH-HHHHhCCCccce
Confidence 5666677743222346899999999999999999999988776 78887731 12222211 12222211111
Q ss_pred ----CcchHHHHHhhc-CCcEEEEEcCCC
Q 048627 151 ----IPDIDLNFRRLS-RIKILIVFDDVT 174 (689)
Q Consensus 151 ----~~~~~~l~~~l~-~~~~LlVlDdv~ 174 (689)
+...+.+.+.+. .++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 133444444444 677899999874
No 299
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.52 E-value=0.0082 Score=56.10 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=59.1
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCC
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENV 150 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 150 (689)
..+.+...+. .+-+++.|.|++|.||||++..+...+...-..+++.. +. ......+...... .
T Consensus 6 Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a---------pT-~~Aa~~L~~~~~~---~ 69 (196)
T PF13604_consen 6 QREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA---------PT-NKAAKELREKTGI---E 69 (196)
T ss_dssp HHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE---------SS-HHHHHHHHHHHTS----
T ss_pred HHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC---------Cc-HHHHHHHHHhhCc---c
Confidence 3444555553 23367889999999999999999887766533333333 11 1122223222221 1
Q ss_pred CcchHHHHHhh----------cCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccchhh
Q 048627 151 IPDIDLNFRRL----------SRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQV 204 (689)
Q Consensus 151 ~~~~~~l~~~l----------~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~~~~ 204 (689)
...+..+.... ..+.-+||+|++.... ++..+..... ..|+++|+.--..+.
T Consensus 70 a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 70 AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 11111111111 1233599999997543 4666665544 357788877665543
No 300
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.52 E-value=0.023 Score=63.91 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 62 KNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+.++|.+..+.++.+....-......|.|+|.+|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568999988888777665322333447899999999999999998763
No 301
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.50 E-value=0.013 Score=56.84 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc------ccceEEeee
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD------FEGTCFLEN 122 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~ 122 (689)
|...|..+-....++.|+|++|+|||+||.+++...... ...++|++.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 444554333446789999999999999999998653222 357778773
No 302
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.004 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 303
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.50 E-value=0.0074 Score=59.08 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=23.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.|.|+|.||+||||+|+++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46889999999999999999998766433344444
No 304
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.033 Score=58.69 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=74.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchH-HHHHhhcCC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDID-LNFRRLSRI 164 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~l~~~l~~~ 164 (689)
+.-|.+||++|+|||-||++|++.-+-.| +. + .+. .++.....+ .+.++. .+.+.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V-------KGP-ELlNkYVGE------SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V-------KGP-ELLNKYVGE------SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e-------cCH-HHHHHHhhh------HHHHHHHHHHHhhcCC
Confidence 45688999999999999999999876554 22 1 111 111111110 111222 223333467
Q ss_pred cEEEEEcCCCCh-------------HHHHHHhcCCCCCC--CCceEEeeccchhhh-hh----cCcceEEEcCCCCHHHH
Q 048627 165 KILIVFDDVTCF-------------TQLESLIGSLDWLT--PVSRIIITTRNKQVL-RN----WEVRKIYEVEALEYHHA 224 (689)
Q Consensus 165 ~~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~g~~iliTtR~~~~~-~~----~~~~~~~~l~~L~~~~~ 224 (689)
+++|.||.++.. .....|+..++... .|.-||-.|-.+++. +. -......-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999999531 12445555554332 344555555433332 11 12345778888889999
Q ss_pred HHHHHHhcc
Q 048627 225 LELFSRHAF 233 (689)
Q Consensus 225 ~~lf~~~~~ 233 (689)
.++++...-
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999888774
No 305
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.46 E-value=0.0016 Score=54.57 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccce
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGT 117 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 117 (689)
.|.|+|.+|+||||+|+.++..+...|..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 367999999999999999999988877643
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.44 E-value=0.0085 Score=56.85 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=35.1
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+..++.+.+........+|+|+|+||+|||||.-++...+...-..+..+ .++..|+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl-AVDPSSp 70 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL-AVDPSSP 70 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE-EE-GGGG
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE-EECCCCC
Confidence 34444444443345678999999999999999999999877653333333 3444444
No 307
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.43 E-value=0.0061 Score=62.51 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=62.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee-eccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE-NVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
...|.|.|+.|+||||+++.+...+.......++.. +..+.... .. ..+..+.............++..+...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~--~~----~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR--NK----RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc--Cc----cceEEccccCCCCcCHHHHHHHhhccC
Confidence 367999999999999999999887765444443332 11110000 00 000000000111224556677788888
Q ss_pred cEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 165 KILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 165 ~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
+=.|++|++.+.+.....+.. ...|..++.|.-...
T Consensus 196 pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 889999999988776553332 234555666655443
No 308
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.42 E-value=0.002 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
|.|+|++|+|||++|..++.++.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999886644
No 309
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.40 E-value=0.0073 Score=57.81 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=36.9
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..|...|..+-....++.|+|.+|+||||+|.+++......-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455666434345678999999999999999999988755555667776
No 310
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0042 Score=57.56 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=27.1
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999998866
No 311
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.006 Score=54.97 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=76.0
Q ss_pred CCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC--CccCcccCCCCCCCEEE
Q 048627 573 GNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL--RRLPECLGQLSSPILLN 650 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~ 650 (689)
.+...++|++|.+..++. +..++.|.+|.+++|.++.--|.--.-+++|..|.+.+|+.. +.+ ..+..+++|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 345788999998887754 778899999999999985544443334678999999997653 233 2456788999999
Q ss_pred ccCCCCccccc----hhhccCCCcEEecCC
Q 048627 651 LAETNIERIPK----SIIQLFMLRYLLLNC 676 (689)
Q Consensus 651 l~~~~l~~lp~----~~~~l~~L~~L~l~~ 676 (689)
+-+|+++.-.. .+..+|+|+.|+...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99998874432 356789999998764
No 312
>PTZ00301 uridine kinase; Provisional
Probab=96.38 E-value=0.0032 Score=59.20 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..+|+|.|.+|+||||||+.+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999887543
No 313
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.36 E-value=0.0099 Score=62.00 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHhhc-------CC-C------CCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 63 NQLVGVESTVEEIESLLG-------VE-S------KDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~-------~~-~------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++||.+..++.+...+. .. . -....|.++|++|+|||++|+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 468999998887754431 10 0 01356889999999999999999987643
No 314
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.34 E-value=0.0059 Score=58.02 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.9
Q ss_pred hhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 78 LLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 78 ~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
+|..+-....++.|+|++|+|||++|.+++.........++|++.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 343333346789999999999999999999887666677888873
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.026 Score=57.63 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=28.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~ 121 (689)
..+++++|+.|+||||++.+++......+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 57899999999999999999998864433 3445544
No 316
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.33 E-value=0.017 Score=57.42 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc-c-cceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD-F-EGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~~~ 121 (689)
..++++|+|++|+||||++..++..+..+ - ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45799999999999999999999886543 2 3444444
No 317
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.32 E-value=0.0032 Score=59.17 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=113.1
Q ss_pred ccCccchhhccccCccccccC--CCCCCCCCCCcccEEeccCCCCC---cccC-------ccCCCCCCCCEEeccCCCCC
Q 048627 497 KHYSKLNRIIHAACNKLIAKT--PNPTLMPRLNKLVFLNLRGSKSL---KSLP-------SEIFNLEFLTKLDLSGCSKL 564 (689)
Q Consensus 497 ~~l~~L~~l~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~---~~~p-------~~l~~l~~L~~L~l~~~~~l 564 (689)
..+..+..++++++..- ... .....+.+-.+|+..++++--.. ..+| ..+-+++.|+..+||+|..-
T Consensus 27 ~~~d~~~evdLSGNtig-tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIG-TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCccc-HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34555666677765321 100 00112344567777777653211 1122 33557899999999999877
Q ss_pred CCCCCCC------cCCCcEEEcccccccccCc--------------ccccCCCCCEEecCCCCCCCCCCc-----ccCCC
Q 048627 565 KRLPEIS------SGNISWLLLRGSAIEELPS--------------SIERQLRLSWLDLTDCKMFKSLPS-----SLCKL 619 (689)
Q Consensus 565 ~~~p~~~------~~~L~~L~l~~~~l~~l~~--------------~i~~l~~L~~L~l~~~~~~~~lp~-----~~~~l 619 (689)
..+|+.. ...|.+|.+++|.+..+.. -..+-|.|+....+.|++ ...|. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhh
Confidence 6666532 2678999999998874432 133567899999888876 33332 23333
Q ss_pred CCccEEEeecCCCCCc-----cCcccCCCCCCCEEEccCCCCcc-----ccchhhccCCCcEEecCCCCCCC
Q 048627 620 KSLGVLDLHGCSNLRR-----LPECLGQLSSPILLNLAETNIER-----IPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 620 ~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
.+|+++.+..|..-.. +-..+..+.+|+.|+++.|-++. +...++.-+.|+.|.+.+|-+..
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 5889999887543221 00123346899999999998872 33334455679999999998753
No 318
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.044 Score=54.26 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHH---hhccccceEEeeeccchhcC----CC----ChHHHHHHHHHHh---cCCC
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDK---ISGDFEGTCFLENVRVESQR----PG----GLAWLRQKLLLNL---LKDE 148 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~----~~----~~~~l~~~~l~~~---~~~~ 148 (689)
+++...|.+.|.+|.|||-||.+..-. -+..|..++.....-.+... +. .+.-+++.+...+ ....
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 467889999999999999999877633 23345444332221111111 01 1112222222222 2211
Q ss_pred -CCCcchHHHH----------HhhcCC---cEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 149 -NVIPDIDLNF----------RRLSRI---KILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 149 -~~~~~~~~l~----------~~l~~~---~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
.....++.+. .+.+++ +-++|+|++.+. .++..++.. .++|+||+.|--..+
T Consensus 322 ~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~aQ 389 (436)
T COG1875 322 EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHHH
Confidence 1111111110 112232 468999999764 345555554 589999998876543
No 319
>PRK04040 adenylate kinase; Provisional
Probab=96.30 E-value=0.0045 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|+|++|+||||+++.+...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999875
No 320
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.29 E-value=0.011 Score=61.90 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..++||++.++.+...+..+ ..|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 35899999999998887533 35789999999999999999987654
No 321
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.28 E-value=0.029 Score=49.82 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
+|.|+|.+|+||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 322
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.26 E-value=0.0059 Score=52.27 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.1
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+..++.+.+...-....+|.+.|.-|+||||+++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444444432223345899999999999999999998753
No 323
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.26 E-value=0.13 Score=54.74 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=45.0
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh-ccccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS-GDFEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
..|...-...|.+++. +-....++.|.|.+|+|||++|..++..+. .+-..++|++.- .....+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-------m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-------MSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-------CCHHHHHHHHHHH
Confidence 3344444455555553 223345788999999999999999997754 333445565521 3445666666655
Q ss_pred hc
Q 048627 144 LL 145 (689)
Q Consensus 144 ~~ 145 (689)
..
T Consensus 246 ~~ 247 (421)
T TIGR03600 246 KS 247 (421)
T ss_pred Hc
Confidence 43
No 324
>PRK06762 hypothetical protein; Provisional
Probab=96.26 E-value=0.0039 Score=56.71 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+.+|.|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999887
No 325
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.24 E-value=0.006 Score=59.68 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
|.++|++|+||||+|+.++..+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999887644
No 326
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.021 Score=52.57 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=56.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc---cc-ceEEeeecc-chhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHh-
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD---FE-GTCFLENVR-VESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRR- 160 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~---f~-~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~- 160 (689)
.-..|.|++|+||||+.+.+++-++.. |. ..+-+.+.+ +...-.....++....--++.. ......-+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld---~cpk~~gmmmaI 214 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD---PCPKAEGMMMAI 214 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc---cchHHHHHHHHH
Confidence 346789999999999999999875433 33 222222111 1110001111111111111111 11111111112
Q ss_pred hcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 161 LSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 161 l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
-.-.+=++|+|++-..++..++...+ ..|.+++.|..-.
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 22456689999998887766666553 5677777776533
No 327
>PRK08233 hypothetical protein; Provisional
Probab=96.22 E-value=0.0039 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|.+|+||||+|..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 328
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.21 E-value=0.0047 Score=58.67 Aligned_cols=27 Identities=41% Similarity=0.653 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999887
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.011 Score=52.22 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=25.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++|.|+.|.|||||++.++..... ..+.+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 60 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG 60 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC
Confidence 358899999999999999998775432 24444443
No 330
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.17 E-value=0.0087 Score=58.99 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.+.+..+-...+++.|+|.+|+|||++|.++......+...++|++
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444344455689999999999999999999999877788899987
No 331
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.17 E-value=0.025 Score=60.06 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+..+.+.|..+-....++.|.|.+|+|||||+.+++......-..++|++
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666544344578999999999999999999888655444667776
No 332
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.17 E-value=0.0034 Score=62.33 Aligned_cols=127 Identities=19% Similarity=0.136 Sum_probs=69.5
Q ss_pred CcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 64 QLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
.+.-.....+++.++|...-...+.|.|.|..|+||||++..+...+...-..++.+.+..+........ ..
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~--------~~ 176 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQ--------IQ 176 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSE--------EE
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccce--------EE
Confidence 3433334445666666432234578999999999999999999987665523334443222211110000 00
Q ss_pred hcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceE-Eeeccch
Q 048627 144 LLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRI-IITTRNK 202 (689)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~i-liTtR~~ 202 (689)
+..........+.+...|+..+=.++++++.+.+....+... ..|..+ +-|....
T Consensus 177 ~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 177 IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 000023335667777788877778999999888776664332 456667 5555433
No 333
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.16 E-value=0.014 Score=53.10 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=62.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHH-HHhc--CC------CCCC-----
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLL-LNLL--KD------ENVI----- 151 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~--~~------~~~~----- 151 (689)
...|.|+|..|-||||.|..++-+...+--.+.++-...... . .+.....+.+- -.+. +. ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-S-TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-c-cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 467889999999999999999988655544444444333321 1 22222222210 0000 00 0000
Q ss_pred --cchHHHHHhhcC-CcEEEEEcCCCC-----hHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 152 --PDIDLNFRRLSR-IKILIVFDDVTC-----FTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 152 --~~~~~l~~~l~~-~~~LlVlDdv~~-----~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
...+..++.+.. +-=++|||++-. .-..+++...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 123333444544 445999999832 112333333333345677999999976
No 334
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.15 E-value=0.0064 Score=57.18 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=48.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC-------CCCCC--------
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK-------DENVI-------- 151 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~-------- 151 (689)
..++|.|.+|+|||+|+..+++.... +.++|+. +......+..+.+++...-.. ...+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 46889999999999999999998753 3335554 222213445555555332100 01111
Q ss_pred -----cchHHHHHhhcCCcEEEEEcCCCC
Q 048627 152 -----PDIDLNFRRLSRIKILIVFDDVTC 175 (689)
Q Consensus 152 -----~~~~~l~~~l~~~~~LlVlDdv~~ 175 (689)
..++.++. +++++|+++||+..
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHH
Confidence 11222333 68999999999944
No 335
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.14 E-value=0.016 Score=59.48 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=38.0
Q ss_pred CCcccchhhHHHHHHhhcC------------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 63 NQLVGVESTVEEIESLLGV------------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~------------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
.++||.++.++.+.-.+.. ....++.|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4578888877777544431 111257889999999999999999999875443
No 336
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.5 Score=47.09 Aligned_cols=167 Identities=8% Similarity=0.050 Sum_probs=92.0
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh-hcc--------cc-ceEEeeeccchhcCCCChHHHHHHHH
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI-SGD--------FE-GTCFLENVRVESQRPGGLAWLRQKLL 141 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~-~~~--------f~-~~~~~~~~~~~~~~~~~~~~l~~~~l 141 (689)
++.+.+.+.. ..-.++..++|..|+||+++|..+++.+ +.+ .+ ...++. ..+ .. -.+.++. ++.
T Consensus 5 ~~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~-i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KD-LSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--Cc-CCHHHHH-HHH
Confidence 3445555532 1234677799999999999999999886 111 11 112221 001 11 2222222 222
Q ss_pred HHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeec-cchhhhhh-cCcceEEEcC
Q 048627 142 LNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-RNKQVLRN-WEVRKIYEVE 217 (689)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTt-R~~~~~~~-~~~~~~~~l~ 217 (689)
..+.-.. .-++.+-++|+|+++... ...+++..+....+.+.+|++| ....+.+. ....+.+++.
T Consensus 79 ~~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 79 NKLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred HHhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 2221110 001467788899987653 3556666665556667666555 44444443 3456789999
Q ss_pred CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 218 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 218 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
++++++..+.+.... . + .+.+..++...+|.=.|+..+
T Consensus 148 ~l~~~~l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 148 EPDQQKILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCHHHHHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHHH
Confidence 999999998776541 1 1 233555666666632455443
No 337
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.023 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
..+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998853
No 338
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.041 Score=57.02 Aligned_cols=148 Identities=19% Similarity=0.186 Sum_probs=79.4
Q ss_pred CCCcccchh---hHHHHHHhhcCCC-------CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 62 KNQLVGVES---TVEEIESLLGVES-------KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~---~~~~l~~~l~~~~-------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
.++.-|.|+ |+++|.+.|.... .=++-|.++|++|.|||-||++++-...-- +|.....+..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFd---- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFD---- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchh----
Confidence 445678776 4556666664221 126778999999999999999998764311 2222111110
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHH----HhhcCCcEEEEEcCCCC-------------hHHHHHHhcCCCCCCCCce
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNF----RRLSRIKILIVFDDVTC-------------FTQLESLIGSLDWLTPVSR 194 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~----~~l~~~~~LlVlDdv~~-------------~~~~~~l~~~l~~~~~g~~ 194 (689)
+++-. .++.+++ ..-+.-+++|.||+++. .+.+..++..++.+.+..-
T Consensus 375 -------Em~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 375 -------EMFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred -------hhhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 00000 1112222 22235689999999853 1225566666665554433
Q ss_pred EEe--eccchhhhhh----cC-cceEEEcCCCCHHHHHHHHHHhc
Q 048627 195 III--TTRNKQVLRN----WE-VRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 195 ili--TtR~~~~~~~----~~-~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
||| .|..++.+.. .+ .+..+.++.-+-.-..++|..+.
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 333 3433333221 12 23456676666666666666665
No 339
>PRK03839 putative kinase; Provisional
Probab=96.12 E-value=0.0048 Score=57.01 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 340
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.12 E-value=0.031 Score=59.35 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.++.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666533334568999999999999999999988764445667776
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.11 E-value=0.021 Score=57.45 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
.+.+++++|++|+||||++..++..+...-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999999877553333333
No 342
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.078 Score=56.28 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=35.3
Q ss_pred cchhhHHHHHHhhcCC----CCCeeEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEee
Q 048627 67 GVESTVEEIESLLGVE----SKDVWALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLE 121 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~----~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~ 121 (689)
++...+..|.+.+... -....+|+|+|++|+||||++..++..+..+. ..+.++.
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4444455555544311 12357999999999999999999998765432 3344444
No 343
>PRK06547 hypothetical protein; Provisional
Probab=96.09 E-value=0.0091 Score=54.28 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.6
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.....+|+|.|++|+||||+|..++...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3557899999999999999999999874
No 344
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.08 E-value=0.013 Score=52.35 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=18.7
Q ss_pred EEecCCCCHHHHHHHHHHHh
Q 048627 91 IWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 91 I~G~gGiGKTtLa~~~~~~~ 110 (689)
|.|+||+||||+|..++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 345
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.018 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|.|.|++|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999999983
No 346
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.07 E-value=0.0092 Score=57.49 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...+.+|+|.|+.|+|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999887654
No 347
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.06 E-value=0.0075 Score=56.78 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
..+.+|.++||+|+||||+.++++..+..++.....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 4567889999999999999999999987776554333
No 348
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.36 Score=49.41 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=31.7
Q ss_pred HHHHHHhhcC-C------CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 72 VEEIESLLGV-E------SKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 72 ~~~l~~~l~~-~------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.++|.++|.. . ...+.+|.++|.-|.||||.|-++++.++.+
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~ 127 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK 127 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc
Confidence 3556666642 1 1236789999999999999999999998763
No 349
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.02 E-value=0.036 Score=55.68 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh------ccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS------GDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~------~~f~~~~~~~ 121 (689)
...|.++|..+-....++-|+|++|+|||+|+.+++-... ..-..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 3455566653334457888999999999999998875422 1224677877
No 350
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.028 Score=52.69 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 64 QLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+=|-.++++++.+.... +-+.++-|.++|++|.|||-+|++|+++-.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 345677788888776531 224567789999999999999999999754
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.01 E-value=0.026 Score=51.66 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++.++|++|+||||++..++..+...-..++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988766533344444
No 352
>PRK00625 shikimate kinase; Provisional
Probab=96.01 E-value=0.0057 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|.|+|++|+||||+++.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 353
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.00 E-value=0.0083 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhc
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
|.|+|.+|+||||+++.++..++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 354
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.99 E-value=0.0081 Score=55.22 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887643
No 355
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.98 E-value=0.022 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|.|.|++|+||||+|+.++..+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999876
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.96 E-value=0.015 Score=56.01 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=38.7
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
.++...+........+|+|+|.||+|||||.-++...+..+-..+..+. ++..|+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA-VDPSSp 92 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA-VDPSSP 92 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE-ECCCCC
Confidence 4455555555667889999999999999999999998766544444333 333333
No 357
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.96 E-value=0.01 Score=54.48 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=27.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
..+|+|.|++|+||||+|+.++..+...-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999999875432234444
No 358
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.95 E-value=0.014 Score=58.22 Aligned_cols=60 Identities=28% Similarity=0.253 Sum_probs=41.0
Q ss_pred CCCCCcccchhhHHH---HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEE
Q 048627 60 DNKNQLVGVESTVEE---IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCF 119 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 119 (689)
.....+||.....+. +.+++..+.-..+.|.|.|++|.|||+||..++..+....+++..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 345689998866544 455555444456889999999999999999999999876655443
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.95 E-value=0.013 Score=57.50 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=30.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
...++.|+|++|+|||++|.+++......-..++|++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35789999999999999999998775445567788773
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.064 Score=54.43 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.++++|+|+.|+||||++..++..+..+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999987654434455554
No 361
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.92 E-value=0.0078 Score=57.00 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
....+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998765
No 362
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.92 E-value=0.0071 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 363
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.92 E-value=0.016 Score=56.89 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=44.1
Q ss_pred ccCCCCCcccchhhHHH---HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc
Q 048627 58 LRDNKNQLVGVESTVEE---IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE 115 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 115 (689)
+....+.+||..+..+. +.+++..+.-..+.|.|+|++|.|||+||..+++.+...-+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 44466789998765433 56666555556789999999999999999999999876533
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0066 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
+|.|.|++|+||||+|+.+++++.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999998653
No 365
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.87 E-value=0.036 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...++|.|+.|.|||||++.++..+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999987643
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.87 E-value=0.017 Score=55.91 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..|.++|..+=....++.|.|++|+|||++|.++.......-..++|++
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566544445678999999999999999998876444556777877
No 367
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.85 E-value=0.0083 Score=55.67 Aligned_cols=92 Identities=22% Similarity=0.120 Sum_probs=50.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC--CCCCCcchHHHHHhhcC
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK--DENVIPDIDLNFRRLSR 163 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~l~~~l~~ 163 (689)
...++|.|+.|+||||+++.+...+... ...+.+.+..+......... ++..+... ........+.++..++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~lR~ 99 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWV----RLVTRPGNVEGSGEVTMADLLRSALRM 99 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEE----EEEEecCCCCCCCccCHHHHHHHHhcc
Confidence 4579999999999999999998776533 23333332222111000000 00000000 00112445566666777
Q ss_pred CcEEEEEcCCCChHHHHHH
Q 048627 164 IKILIVFDDVTCFTQLESL 182 (689)
Q Consensus 164 ~~~LlVlDdv~~~~~~~~l 182 (689)
.+=.++++++.+.+.+..+
T Consensus 100 ~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 100 RPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred CCCEEEEEccCcHHHHHHH
Confidence 7778889999888765544
No 368
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.03 Score=54.61 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
+...|..+-...+++=|+|+.|+||||+|.+++-.....-..++|++.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 334443333456889999999999999999999887777678899984
No 369
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.84 E-value=0.049 Score=53.38 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCC--------CCCcchH
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDE--------NVIPDID 155 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~~~~~ 155 (689)
.+...++|.|+.|+|||||.+.++..+... .+.+++.. ..+... .....+...+ ..+.... .......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 345789999999999999999999877543 33333321 111100 1111222111 0111100 0011122
Q ss_pred HHHHhhc-CCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhh
Q 048627 156 LNFRRLS-RIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVL 205 (689)
Q Consensus 156 ~l~~~l~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~ 205 (689)
.+...+. ..+=++++|++...+.+..+...+. .|..+|+||.+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2333332 5778999999988777776665543 577899999876553
No 370
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.84 E-value=0.015 Score=50.87 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=26.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999997644 44444444
No 371
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.068 Score=57.54 Aligned_cols=178 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred CCCCCcccchhhHHHHHHhhc---CCC-------CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC
Q 048627 60 DNKNQLVGVESTVEEIESLLG---VES-------KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR 129 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~---~~~-------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 129 (689)
....+.-|.|+..+++.+.+. ... .=++-|.++|++|.|||.||++++....-.|- +++ .+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf---~iS------GS 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF---SIS------GS 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce---ecc------ch
Confidence 344567898887777666553 211 12677899999999999999999987432221 111 00
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCC----------------hHHHHHHhcCCCCCCC--
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTC----------------FTQLESLIGSLDWLTP-- 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----------------~~~~~~l~~~l~~~~~-- 191 (689)
.+.+-..+. ......+...+..++-++++++|.++. .+.+..++...+-++.
T Consensus 218 ---------~FVemfVGv-GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 ---------DFVEMFVGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred ---------hhhhhhcCC-CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 000000000 001111233344455678999998742 1235556665554553
Q ss_pred CceEEeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 192 VSRIIITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 192 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
|--|+..|-.++|+.. -.....+.++..+-....+.+..++-...-.. ..+ ...|++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~--~Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE--DVD-LKKIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC--cCC-HHHHhhhCCCcccc
Confidence 2223333333333321 23345677777777777777776653322111 111 23377777777655
No 372
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.82 E-value=0.013 Score=54.93 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
....+|+|+|++|+||||+|+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999998754433455554
No 373
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.82 E-value=0.017 Score=48.37 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=34.6
Q ss_pred Ccccchh----hHHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 64 QLVGVES----TVEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 64 ~~vGr~~----~~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.++|..- .++.|...+. ...+.+-|++.+|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3556554 4455555554 335568899999999999999999999873
No 374
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.81 E-value=0.011 Score=60.49 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHhhcC---------C---CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 63 NQLVGVESTVEEIESLLGV---------E---SKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~---------~---~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.+++|.+..++.+..++.. . ...++.|.++|++|+|||++|+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4588999888888766631 0 0124688999999999999999999986543
No 375
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.80 E-value=0.0086 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 376
>PRK05439 pantothenate kinase; Provisional
Probab=95.79 E-value=0.013 Score=58.21 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...+.+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999887653
No 377
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.78 E-value=0.013 Score=60.05 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=54.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcccc---ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFE---GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLS 162 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~ 162 (689)
...|.|+|+.|+||||+++.+...+....+ .++.+.+..+... ...... .....+.............++..++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~--~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY--DEIETI-SASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec--cccccc-cceeeeeeccccccCHHHHHHHHhc
Confidence 468999999999999999999988754332 2233222111100 010000 0000111001111245567777888
Q ss_pred CCcEEEEEcCCCChHHHHHHh
Q 048627 163 RIKILIVFDDVTCFTQLESLI 183 (689)
Q Consensus 163 ~~~~LlVlDdv~~~~~~~~l~ 183 (689)
..+-.+++..+.+.+..+..+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAAL 231 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHH
Confidence 888899999999888765443
No 378
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.00052 Score=64.54 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=69.0
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
+.+.|++.||.+..|.-.-.|+.|++|.++-|.|+.+ ..+..+++|+.|+|..+. + ..+..+..+.++++|+.|-|.
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I-~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-I-ESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-c-ccHHHHHHHhcCchhhhHhhc
Confidence 5566677777777765545788899999999998877 446678889999888643 2 233334466788888999888
Q ss_pred CCCCCcccCc-----cCCCCCCCCEEe
Q 048627 536 GSKSLKSLPS-----EIFNLEFLTKLD 557 (689)
Q Consensus 536 ~~~~~~~~p~-----~l~~l~~L~~L~ 557 (689)
.|.-.+.-+. .+..+++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 8775554332 244577777775
No 379
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.77 E-value=0.009 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.354 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999988754
No 380
>PRK14528 adenylate kinase; Provisional
Probab=95.77 E-value=0.03 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998775
No 381
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.74 E-value=0.01 Score=59.94 Aligned_cols=110 Identities=18% Similarity=0.089 Sum_probs=60.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
....++|.|..|+||||+++.+...+... ..++.+.+..+..........+. ..............+.+...++..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCC
Confidence 34689999999999999999998776543 23444443333221100000000 000000111224556677778888
Q ss_pred cEEEEEcCCCChHHHHHHhcCCCCCCCCce-EEeeccch
Q 048627 165 KILIVFDDVTCFTQLESLIGSLDWLTPVSR-IIITTRNK 202 (689)
Q Consensus 165 ~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~-iliTtR~~ 202 (689)
+=.+++|++...+.++.+ .... .|.. ++.|+...
T Consensus 219 pd~ii~gE~r~~e~~~~l-~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 219 PDRIILGELRGDEAFDFI-RAVN---TGHPGSITTLHAG 253 (308)
T ss_pred CCeEEEeccCCHHHHHHH-HHHh---cCCCeEEEEEeCC
Confidence 888999999987665443 3322 2332 35555544
No 382
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.74 E-value=0.019 Score=56.28 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccc
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEG 116 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 116 (689)
..+..+|.|.|.+|+|||||+..+.+.+......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 3467899999999999999999999998766533
No 383
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0061 Score=57.38 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=63.3
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecC--CCCCccCcccCCCCCCCEEEccCCCCcc---ccchhhcc
Q 048627 592 IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGC--SNLRRLPECLGQLSSPILLNLAETNIER---IPKSIIQL 666 (689)
Q Consensus 592 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~l~~~~l~~---lp~~~~~l 666 (689)
...+..|+.|++.++.++. + ..+-.|++|+.|.++.| ...+.++.....+++|+.|++++|+++. ++ .+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL 115 (260)
T ss_pred cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence 3445567777777666522 1 12345889999999998 5566666556667999999999999873 33 46678
Q ss_pred CCCcEEecCCCCCCC
Q 048627 667 FMLRYLLLNCSEGHE 681 (689)
Q Consensus 667 ~~L~~L~l~~~~~l~ 681 (689)
.+|..|++.+|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 889999999998764
No 384
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.73 E-value=0.013 Score=52.92 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=56.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
..+++|.|+.|.|||||.+.++.... ...+.+++.... ... ............-+..-.......-.+...+-..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~--~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF--ASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc--CCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 35899999999999999999876543 234555554211 110 11111100000000000000111222333445667
Q ss_pred EEEEEcCCCC---hHHHHHHhcCCCCC-CCCceEEeeccchhhhh
Q 048627 166 ILIVFDDVTC---FTQLESLIGSLDWL-TPVSRIIITTRNKQVLR 206 (689)
Q Consensus 166 ~LlVlDdv~~---~~~~~~l~~~l~~~-~~g~~iliTtR~~~~~~ 206 (689)
-++++|+... ....+.+...+... ..|..||++|.+.....
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7888998742 22222222222111 23667888888875443
No 385
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.73 E-value=0.048 Score=48.92 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHHhhcCCcEEEEEcCC----CChHHHHHH--hcCCCCCCCCceEEeeccchhhhhhcC
Q 048627 156 LNFRRLSRIKILIVFDDV----TCFTQLESL--IGSLDWLTPVSRIIITTRNKQVLRNWE 209 (689)
Q Consensus 156 ~l~~~l~~~~~LlVlDdv----~~~~~~~~l--~~~l~~~~~g~~iliTtR~~~~~~~~~ 209 (689)
.+.+.+-+++-+++-|+- +....|+-+ ...+ ...|..|+++|.+......+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 344455678888888865 333334433 2222 257899999999998876654
No 386
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.027 Score=51.41 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++|.|+.|.|||||++.++.-... ..+.+++.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~ 62 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILID 62 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEEC
Confidence 458999999999999999999876432 34444443
No 387
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.72 E-value=0.012 Score=54.51 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.++|+|+|+.|+|||||+..+......+|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468999999999999999999999988886555444
No 388
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.70 E-value=0.021 Score=58.46 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcC
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~ 163 (689)
..++=+.|||..|.|||.|.-.+|+.+...-...+... .-+..+.+.+- .+. .....+..+.+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~-~~~---~~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLH-QLR---GQDDPLPQVADELAK 126 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHH-HHh---CCCccHHHHHHHHHh
Confidence 34778999999999999999999988543211111111 11222222222 222 233445566667777
Q ss_pred CcEEEEEcCCC--ChHH---HHHHhcCCCCCCCCceEEeec
Q 048627 164 IKILIVFDDVT--CFTQ---LESLIGSLDWLTPVSRIIITT 199 (689)
Q Consensus 164 ~~~LlVlDdv~--~~~~---~~~l~~~l~~~~~g~~iliTt 199 (689)
+..||.||++. +..+ +..+...+- ..|..++.||
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTS 165 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATS 165 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecC
Confidence 88899999873 3332 344443332 4565455554
No 389
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.70 E-value=0.025 Score=54.06 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=66.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCC------CCC-----cc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDE------NVI-----PD 153 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~-----~~ 153 (689)
...+++|+|..|+||||+++.+..-..... +.+++..-.-.........+...+++..++-.. ... ..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 346899999999999999999987665443 333333111000000122333444555443211 000 22
Q ss_pred hHHHHHhhcCCcEEEEEcCCCC------hHHHHHHhcCCCCCCCCceEEeeccchhhhhhc
Q 048627 154 IDLNFRRLSRIKILIVFDDVTC------FTQLESLIGSLDWLTPVSRIIITTRNKQVLRNW 208 (689)
Q Consensus 154 ~~~l~~~l~~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~~ 208 (689)
.-.+.+.+.-++-++|.|+.-. ..+.-.++..+. ...|...+..|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 2344566778889999998733 223333333322 13456677777777666553
No 390
>PRK13947 shikimate kinase; Provisional
Probab=95.68 E-value=0.0091 Score=54.62 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.|.|+|++|+||||+|+.+++.+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998743
No 391
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.67 E-value=0.0097 Score=53.86 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=32.7
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888777532233356779999999999999999885
No 392
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.66 E-value=0.0079 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|.|+|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998876
No 393
>PRK15453 phosphoribulokinase; Provisional
Probab=95.65 E-value=0.017 Score=55.93 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
....+|+|.|.+|+||||+|+.++..+...-...++++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 35679999999999999999999987754322334443
No 394
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.64 E-value=0.12 Score=56.04 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 62 KNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...++|....+.++.+.+.........|.|+|.+|+|||++|+.+...-
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3468999988888877775333344568899999999999999988763
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.64 E-value=0.022 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3589999999999999999888654
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.63 E-value=0.046 Score=54.71 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=53.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc--cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF--EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
+.+.|.|.+|+||||+++.++..+.... ..++.+.+..+......... .+..........+.++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998875432 23344443322211100000 0000111114556777788888
Q ss_pred cEEEEEcCCCChHHHHHH
Q 048627 165 KILIVFDDVTCFTQLESL 182 (689)
Q Consensus 165 ~~LlVlDdv~~~~~~~~l 182 (689)
+=.+|+.++.+.+.++.+
T Consensus 205 pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCEEEEeccCCHHHHHHH
Confidence 888889999988766543
No 397
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.63 E-value=0.02 Score=60.56 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=48.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc-cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCC---------cchHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF-EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVI---------PDIDL 156 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------~~~~~ 156 (689)
...+|+|++|+|||||++.+++.+.... +..+++..+.+-. ..+..+.+.+-..+.....+. ...-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999875432 3333444433322 333333333311121111111 11111
Q ss_pred HHHhh--cCCcEEEEEcCCCChH
Q 048627 157 NFRRL--SRIKILIVFDDVTCFT 177 (689)
Q Consensus 157 l~~~l--~~~~~LlVlDdv~~~~ 177 (689)
+-+++ .++.+||++|++....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHH
Confidence 22223 5899999999996543
No 398
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.63 E-value=0.018 Score=61.61 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhc-CCCCCC
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL-KDENVI 151 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~ 151 (689)
+.+..++. ....+|.|+|+.|+||||+...+.+.+...-..++.+.+-.+... ... .+.. ......
T Consensus 232 ~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v~~~~g~ 298 (486)
T TIGR02533 232 SRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQVNPKIGL 298 (486)
T ss_pred HHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEEccccCc
Confidence 34444442 233589999999999999999888876543233344332111110 111 0111 111123
Q ss_pred cchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 152 PDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 152 ~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
.....++..|+..+=.|++.++.+.+......... ..|-.|+-|-...
T Consensus 299 ~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa~ 346 (486)
T TIGR02533 299 TFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHTN 346 (486)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECCC
Confidence 45677888888888899999999988654443321 2344455444433
No 399
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.63 E-value=0.013 Score=54.42 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=27.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.|.|++|+|||+||.+++......-..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655556677776
No 400
>PRK05973 replicative DNA helicase; Provisional
Probab=95.62 E-value=0.022 Score=54.32 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=29.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458889999999999999999887544455666766
No 401
>PF13245 AAA_19: Part of AAA domain
Probab=95.62 E-value=0.048 Score=41.75 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=18.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+++.|.|++|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999666655554
No 402
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.62 E-value=0.039 Score=53.84 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh------ccccceEEee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS------GDFEGTCFLE 121 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~------~~f~~~~~~~ 121 (689)
.|.++|..+-....+.=|+|++|+|||.|+.+++-... +.-..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 46666643323346888999999999999999986632 1223467776
No 403
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.62 E-value=0.013 Score=55.79 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=22.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998875
No 404
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.61 E-value=0.065 Score=64.47 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.++-|.++|++|.|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999874
No 405
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.61 E-value=0.02 Score=51.69 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..++++|+|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 406
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.019 Score=50.68 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
....+|-++|.+|.||||+|.++...+..+.-.+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3457899999999999999999999987665444443
No 407
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.60 E-value=0.0088 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 408
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.59 E-value=0.03 Score=51.61 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++|.|+.|.|||||++.++.... ...+.+++.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~ 59 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLD 59 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 45899999999999999999887543 235555554
No 409
>PRK14529 adenylate kinase; Provisional
Probab=95.59 E-value=0.05 Score=51.51 Aligned_cols=90 Identities=19% Similarity=0.070 Sum_probs=46.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccc-cceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC-cE
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDF-EGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI-KI 166 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~ 166 (689)
|.|.|++|+||||+|+.++..+.-.+ .....+ ++.-.....+....++++.. +..-.+.-....+.+++... .-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR-GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhccCCC
Confidence 77899999999999999998864221 111111 11111102223333333322 11112234445556666421 34
Q ss_pred EEEEcCC-CChHHHHHH
Q 048627 167 LIVFDDV-TCFTQLESL 182 (689)
Q Consensus 167 LlVlDdv-~~~~~~~~l 182 (689)
=+|||++ .+..|.+.|
T Consensus 79 g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cEEEeCCCCCHHHHHHH
Confidence 5899999 444554444
No 410
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.52 Score=47.32 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCCCcccchhhHHHHHHhhc----------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 61 NKNQLVGVESTVEEIESLLG----------VESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~----------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.=+.+.|..+..+-|.+... .....-+-|.++|++|.|||-||++|+..-...
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 33467788877777766542 112234678899999999999999999986633
No 411
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.58 E-value=0.038 Score=57.86 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=51.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCC-------
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVI------- 151 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~------- 151 (689)
-..++|.|.+|+|||||+..++.........++.+..+++ ....+..+.+++...-... ..+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999998876544333333333333 2244555555555431110 0111
Q ss_pred --cchHHHHHhh---cCCcEEEEEcCCCCh
Q 048627 152 --PDIDLNFRRL---SRIKILIVFDDVTCF 176 (689)
Q Consensus 152 --~~~~~l~~~l---~~~~~LlVlDdv~~~ 176 (689)
...-.+-+++ +++++|+++|++...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1111223333 689999999999543
No 412
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.011 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 413
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.57 E-value=0.02 Score=57.27 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=29.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++.+.|.||+||||+|.+.+-........+..++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998888766655555554
No 414
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.57 E-value=0.055 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999998754
No 415
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.56 E-value=0.026 Score=56.42 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 73 EEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..|...|. .+-...+++-|+|++|+||||||.+++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555553 34445678999999999999999999888665556677876
No 416
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.56 E-value=0.0099 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=22.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
|+|+|+.|+|||||++.++..+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999998765443
No 417
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.56 Score=51.36 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=56.7
Q ss_pred ccCCCCC-cccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch
Q 048627 58 LRDNKNQ-LVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE 126 (689)
Q Consensus 58 ~~~~~~~-~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 126 (689)
.|.+.-+ +=|.++...+|.+.+.. +-....=|.+||++|.|||-+|++|+...+-.| ++ +
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V--- 736 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V--- 736 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e---
Confidence 4444433 44567667777776642 111133577999999999999999998765332 33 1
Q ss_pred hcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCC
Q 048627 127 SQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTC 175 (689)
Q Consensus 127 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 175 (689)
.+.+ ++..... ..+....+...+.-+.++++|.||+++.
T Consensus 737 ----KGPE-LLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 737 ----KGPE-LLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ----cCHH-HHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 1111111 1122223333444457899999999964
No 418
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.53 E-value=0.028 Score=54.19 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+.+.+..+=.....+.|.|.+|+||||||.+++......-..++|++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 445555433344578999999999999999998876444456677776
No 419
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.021 Score=53.11 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 64 QLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
.+=|.+-..+++.+.... +-+.++-|.++|++|.|||.||++++++-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345677777777765531 224578899999999999999999999865544
No 420
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.50 E-value=0.092 Score=52.15 Aligned_cols=36 Identities=17% Similarity=-0.019 Sum_probs=28.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
..++.|.|.+|+||||++.+++...... -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4578899999999999999998886444 45667776
No 421
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.49 E-value=0.032 Score=57.29 Aligned_cols=107 Identities=14% Similarity=-0.006 Sum_probs=60.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcccc--ceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFE--GTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
..+.|+|+.|+||||++..+.+.+....+ .++.+.+..+.... ....+....-.++. .........++..++..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLPPAQSQIG--RDVDSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeecccccccC--CCccCHHHHHHHhhccC
Confidence 46889999999999999999888754332 23333322221110 00001000000111 11124556778888888
Q ss_pred cEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeecc
Q 048627 165 KILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTR 200 (689)
Q Consensus 165 ~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR 200 (689)
+=.|+++++.+.+..+..+.. ...|..++-|--
T Consensus 226 PD~I~vGEiRd~et~~~al~a---a~TGH~v~tTlH 258 (372)
T TIGR02525 226 PKIIGVGEIRDLETFQAAVLA---GQSGHFCLGTLH 258 (372)
T ss_pred CCEEeeCCCCCHHHHHHHHHH---HhcCCcEEEeeC
Confidence 889999999998877654433 134554544443
No 422
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.48 E-value=0.034 Score=53.94 Aligned_cols=87 Identities=18% Similarity=0.106 Sum_probs=46.1
Q ss_pred eeEEEEEecCCCCHHHHH-HHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCCcc----
Q 048627 86 VWALGIWGIGGIGKTTIA-RAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVIPD---- 153 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~---- 153 (689)
-.-++|.|.+|+|||+|| ..+.+.. +-+..+.+..+++ .......+.+++...-... ..+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGe---r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQ---KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEeccc---chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 346889999999999996 4455443 2234433333322 2244555555554332110 011100
Q ss_pred -----hHHHHHhh--cCCcEEEEEcCCCChH
Q 048627 154 -----IDLNFRRL--SRIKILIVFDDVTCFT 177 (689)
Q Consensus 154 -----~~~l~~~l--~~~~~LlVlDdv~~~~ 177 (689)
.-.+-+++ +++.+|+++||+....
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 11112222 4899999999996543
No 423
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.47 E-value=0.01 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998874
No 424
>PRK04328 hypothetical protein; Provisional
Probab=95.47 E-value=0.026 Score=55.03 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.|.++|..+=....++.|.|.+|+|||+||.+++......-..++|++
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455556433344578999999999999999998877444456777776
No 425
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.47 E-value=0.055 Score=52.51 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=49.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh----ccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCC----
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS----GDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVI---- 151 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~---- 151 (689)
.-++|.|-+|+|||+|+..++++.. .+-+.++|+- +++ .......+.+++...-... ..+.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe---R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI---TMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc---ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 4679999999999999999887753 2234455544 322 2244555555554431110 0111
Q ss_pred -----cchHHHHHhh---cCCcEEEEEcCCCChHH
Q 048627 152 -----PDIDLNFRRL---SRIKILIVFDDVTCFTQ 178 (689)
Q Consensus 152 -----~~~~~l~~~l---~~~~~LlVlDdv~~~~~ 178 (689)
...-.+-+++ .++++|+++||+....+
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 1111223333 26899999999965443
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.46 E-value=0.022 Score=52.81 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=28.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRV 125 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 125 (689)
.|+|+|-||+||||+|..++.++..+-...+.+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999977776555434555554444
No 427
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.46 E-value=0.028 Score=61.38 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 62 KNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
++..+.|.+..+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344667777777777777655566779999999999999999999998764
No 428
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.45 E-value=0.033 Score=56.12 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..+.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443334567899999999999999999999887754
No 429
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.44 E-value=0.023 Score=62.57 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.4
Q ss_pred ccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeee
Q 048627 58 LRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLEN 122 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~ 122 (689)
++...+.++|.+..++.|...+... +.+.++|++|+||||+|+.++..+.. +++...|..+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 4555667999999999888877532 46889999999999999999988543 3566777664
No 430
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.44 E-value=0.051 Score=49.74 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=25.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
..+++|.|+.|.|||||++.++..... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 358999999999999999999875432 2344444
No 431
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.43 E-value=0.022 Score=57.09 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=27.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+++.+.|-||+||||+|...+-....+-..+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57889999999999999999988766544455554
No 432
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.42 E-value=0.02 Score=52.88 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
..++|.+..+..+.-... +...+.++|++|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 467898888877766553 2357899999999999999998754
No 433
>PRK06217 hypothetical protein; Validated
Probab=95.42 E-value=0.012 Score=54.53 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|.|.|.+|+||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998863
No 434
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.41 E-value=0.03 Score=56.02 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 73 EEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..|..+|. .+-...+++-|+|++|+||||||.+++.........++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554 33344678899999999999999999988766666777877
No 435
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.41 E-value=0.045 Score=57.03 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC-CCCC
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK-DENV 150 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~ 150 (689)
.+.+.+++. ....++.++|+.|+||||....+...+......++-+.+- +.....++. ++.. ...+
T Consensus 247 ~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP--VE~~~~gI~--------Q~qVN~k~g 313 (500)
T COG2804 247 LARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP--VEYQLPGIN--------QVQVNPKIG 313 (500)
T ss_pred HHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC--eeeecCCcc--------eeecccccC
Confidence 344555552 3457899999999999999999988876655554444421 111101111 1111 1233
Q ss_pred CcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeec
Q 048627 151 IPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITT 199 (689)
Q Consensus 151 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTt 199 (689)
..-...++..|+.-+=+|.+..+.+.+..+....+. -.|--|+-|-
T Consensus 314 ltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa---lTGHLVlSTl 359 (500)
T COG2804 314 LTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAA---LTGHLVLSTL 359 (500)
T ss_pred CCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH---hcCCeEeeec
Confidence 356677888888888899999999888765554431 2454444443
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.39 E-value=0.012 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+|.|.|++|+||||+|+.++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.38 E-value=0.015 Score=54.85 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCCCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 81 VESKDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 81 ~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
......+.|+|+|++|+|||||+..+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999998754
No 438
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.37 E-value=0.011 Score=55.58 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|+|.|++|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 439
>PRK13949 shikimate kinase; Provisional
Probab=95.37 E-value=0.014 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|.|+|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998874
No 440
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.34 E-value=0.037 Score=46.55 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=26.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
|.+.|.||+||||++..++..+...-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999998766544444444
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.34 E-value=0.014 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+++|.|++|+||||+++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988754
No 442
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.34 E-value=0.027 Score=56.15 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCCcccchhhHHHHHHhhcCC----CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 62 KNQLVGVESTVEEIESLLGVE----SKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~----~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.+.|+|.++.++++.+.+... ...-+++.+.||.|.||||||..+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 347999999999999988632 2346899999999999999999998887755
No 443
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.21 Score=53.98 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=89.8
Q ss_pred cccchhhHHHHHHhhcCCC-----------CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCCh
Q 048627 65 LVGVESTVEEIESLLGVES-----------KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~-----------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 133 (689)
+=|..+..+.+.+.+.... .-..-|.++|++|+|||-||.+++....-+ |++ + .+.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v-------KGP 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V-------KGP 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e-------cCH
Confidence 4455555555666553221 112348899999999999999998865422 333 1 222
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHH-HhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCC--CCCCceEE-
Q 048627 134 AWLRQKLLLNLLKDENVIPDIDLNF-RRLSRIKILIVFDDVTCF-------------TQLESLIGSLDW--LTPVSRII- 196 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~g~~il- 196 (689)
+ ++.... + ..++.+..+- +.-..+++++.||+++.. .....++..++. .-.|.-|+
T Consensus 736 E-lL~KyI----G--aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 736 E-LLSKYI----G--ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred H-HHHHHh----c--ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 2 222111 1 1122333333 334479999999999641 224445554431 12354554
Q ss_pred eeccchhhhhh---c-CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 197 ITTRNKQVLRN---W-EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 197 iTtR~~~~~~~---~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.|||..-+-+. . ..++.+.-+.-++.+..+.+....-.-..+. ....+.++.+..|..-|
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 45665432221 1 2234455556677788887776542111111 11245667777776644
No 444
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.31 E-value=0.052 Score=57.05 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=50.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCC------
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVI------ 151 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~------ 151 (689)
-..++|.|.+|+|||||+..+++....+ -+.++|+- +++ ....+..+.+.+...-... ..+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGE---R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGE---RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCc---chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3568999999999999999999886533 34444443 332 2234455555554321110 1111
Q ss_pred ---cchHHHHHhh---cCCcEEEEEcCCCCh
Q 048627 152 ---PDIDLNFRRL---SRIKILIVFDDVTCF 176 (689)
Q Consensus 152 ---~~~~~l~~~l---~~~~~LlVlDdv~~~ 176 (689)
..+-.+.+++ +++++|+++|++...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1112223333 379999999999543
No 445
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.013 Score=51.58 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.6
Q ss_pred EEEEEecCCCCHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIF 107 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~ 107 (689)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 446
>PRK13948 shikimate kinase; Provisional
Probab=95.29 E-value=0.015 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....|.++|+.|+||||+++.++..+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999988743
No 447
>PHA02244 ATPase-like protein
Probab=95.28 E-value=0.016 Score=58.42 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCcccchhhHH----HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 62 KNQLVGVESTVE----EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 62 ~~~~vGr~~~~~----~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...++|...... .+.+++.. ..-|.|+|++|+|||++|+.+++....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445777665553 44444431 224678999999999999999988643
No 448
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.27 E-value=0.016 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 449
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.26 E-value=0.017 Score=53.67 Aligned_cols=25 Identities=36% Similarity=0.290 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.26 E-value=0.051 Score=51.53 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 451
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.29 Score=55.39 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCcccchhhHHHHHHhhcCCC----C--CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 63 NQLVGVESTVEEIESLLGVES----K--DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~----~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
..++|.+..+..|...+.... + ....+.+.|+.|+|||.||++++..+.+..+..+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 457899999999988875221 1 3557788999999999999999999866655555444 1111
Q ss_pred HHHHHHHhcCCCCC---CcchHHHHHhhcCCcE-EEEEcCCCCh
Q 048627 137 RQKLLLNLLKDENV---IPDIDLNFRRLSRIKI-LIVFDDVTCF 176 (689)
Q Consensus 137 ~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~-LlVlDdv~~~ 176 (689)
++ ...+.+.+.. .+....+-+.++.++| +|.||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22 3333333222 2556677888888776 5668999753
No 452
>PRK13768 GTPase; Provisional
Probab=95.25 E-value=0.025 Score=55.23 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++|.|+||+||||++..++..+...-..++.+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 57889999999999999999988765544444443
No 453
>PRK10436 hypothetical protein; Provisional
Probab=95.24 E-value=0.036 Score=58.70 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-CCC
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-ENV 150 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~ 150 (689)
++.+.+++. .....|.|+|+.|+||||....+...+...-..++-+.+ .+......+ .+.... ...
T Consensus 207 ~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiED--PvE~~l~gi--------~Q~~v~~~~g 273 (462)
T PRK10436 207 LAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVED--PVEIPLAGI--------NQTQIHPKAG 273 (462)
T ss_pred HHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecC--CccccCCCc--------ceEeeCCccC
Confidence 344555552 234689999999999999988877776433222222221 111110111 011111 122
Q ss_pred CcchHHHHHhhcCCcEEEEEcCCCChHHHHHHh
Q 048627 151 IPDIDLNFRRLSRIKILIVFDDVTCFTQLESLI 183 (689)
Q Consensus 151 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~ 183 (689)
......++..|+..+=.|++.++.+.+..+..+
T Consensus 274 ~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al 306 (462)
T PRK10436 274 LTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306 (462)
T ss_pred cCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHH
Confidence 356777888888888899999999888765433
No 454
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.23 E-value=0.033 Score=64.35 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=99.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc----cceEEeeeccchhcCCCChH--HHHHHHHHHhcCCCCCCcchHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF----EGTCFLENVRVESQRPGGLA--WLRQKLLLNLLKDENVIPDIDLNFRR 160 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~~~~~l~~~ 160 (689)
.-+.|+|.+|.||||+...++-....+. +..+++..-...... .... .+..-+..................+.
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALAR-KFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhh-hhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 3688999999999999999987643322 222333211000000 1111 22222222333333333444444678
Q ss_pred hcCCcEEEEEcCCCChHH------HHHHhcCCCCCCCCceEEeeccchhhhhhcCcceEEEcCCCCHHHHHHHHH-----
Q 048627 161 LSRIKILIVFDDVTCFTQ------LESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEVEALEYHHALELFS----- 229 (689)
Q Consensus 161 l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~L~~~~~~~lf~----- 229 (689)
+...++++++|.++.... ...+ ..+...-+.+.+|+|+|....-.........++..+.++.......
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i-~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~ 380 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREI-NKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD 380 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHH-HHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence 889999999999976432 2221 1111124578999999987544433334455566665554443222
Q ss_pred ---HhccCCCCCC--hhHHHH---HHHHHHHhCCCchhHHHhhhhhc------CCCHHHHHHHHHHHH
Q 048627 230 ---RHAFKRNHPD--VGYEKL---SSNVMKYAQGVPLALKVLGCFLY------KREKEVWESAINKLQ 283 (689)
Q Consensus 230 ---~~~~~~~~~~--~~~~~~---~~~i~~~~~g~Plal~~~~~~l~------~~~~~~~~~~l~~l~ 283 (689)
...++..... .....+ ...-++.....|+++.+.+..-. ....+.++.+.+.+-
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 1111111111 000111 12233444788988887774433 124455666665543
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.22 E-value=0.021 Score=56.82 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+.|+|+|-||+||||+|..++..+...-..+..++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46899999999999999999988766533344443
No 456
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.19 Score=54.72 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHhhcCCC-------CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC-CChHHH
Q 048627 65 LVGVESTVEEIESLLGVES-------KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP-GGLAWL 136 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~-------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l 136 (689)
..+++..+..+...+.... ....++.++|.+|+||||+++.++..+.-++-. +++..-++... +.-.++
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e---vdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLE---VDCYELVAESASHTETKL 479 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEe---ccHHHHhhcccchhHHHH
Confidence 3467777777777775221 125688899999999999999999997765311 11111111110 111122
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC-------Ch------HHHHHHhc-C-CCCCCCCceEEeeccc
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT-------CF------TQLESLIG-S-LDWLTPVSRIIITTRN 201 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-------~~------~~~~~l~~-~-l~~~~~g~~iliTtR~ 201 (689)
..-+ .. .-...+..|.+-|++ .. ..++.++. . +....++.-++.|+.+
T Consensus 480 ~~~f-~~----------------a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 480 QAIF-SR----------------ARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS 542 (953)
T ss_pred HHHH-HH----------------HhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccc
Confidence 1111 11 111234444444431 11 11222222 1 1112334444444433
Q ss_pred -hhhhhhcC--cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 202 -KQVLRNWE--VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 202 -~~~~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
+.+..... ..+.+.++.+++++..++|+...-... .......+.++++|.|.-+
T Consensus 543 ~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 543 IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCCH
Confidence 33332222 236789999999999999998873221 1112335667777776654
No 457
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.21 E-value=0.024 Score=55.67 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++|+|+|.+|+|||||+.++...++++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999998876 566665
No 458
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.21 E-value=0.064 Score=56.02 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=51.5
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCCc------
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVIP------ 152 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~------ 152 (689)
-..++|.|.+|+|||||+..++.........++.+..+++ ....+..+.+++...-... ..+..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE---R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC---CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999999876543333433333333 2244555555554321110 01111
Q ss_pred ---chHHHHHhh---cCCcEEEEEcCCCChH
Q 048627 153 ---DIDLNFRRL---SRIKILIVFDDVTCFT 177 (689)
Q Consensus 153 ---~~~~l~~~l---~~~~~LlVlDdv~~~~ 177 (689)
..-.+.+++ +++++|+++||+....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 112223333 4789999999995543
No 459
>PRK09354 recA recombinase A; Provisional
Probab=95.20 E-value=0.037 Score=55.87 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 72 VEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 72 ~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
...|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|++.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 344556664 344456789999999999999999999887666677788873
No 460
>PRK13946 shikimate kinase; Provisional
Probab=95.16 E-value=0.018 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.|++.|++|+||||+++.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999874
No 461
>PLN02674 adenylate kinase
Probab=95.16 E-value=0.08 Score=50.81 Aligned_cols=25 Identities=32% Similarity=0.206 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...|.|.|++|+||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3557899999999999999998865
No 462
>PRK14530 adenylate kinase; Provisional
Probab=95.15 E-value=0.017 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|.|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.15 E-value=0.082 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+.+.|+|+-|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478899999999999999998843
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.14 E-value=0.024 Score=54.63 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=22.1
Q ss_pred EEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 91 IWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 91 I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
|.|++|+||||+++.+.+.+......++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 689999999999999999876654444433
No 465
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.049 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987654
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.026 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...++|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 467
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.037 Score=49.70 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=57.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
.+++|.|..|.|||||++.++..+. ...+.+++.... ... .........+. -+..-.......-.+...+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~--~~~~~~~~~i~-~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK--LPLEELRRRIG-YVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc--CCHHHHHhceE-EEeeCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999987654 234555554211 100 00111100000 000000011111223334445677
Q ss_pred EEEEcCCCC---hHHHHHHhcCCCCC-CCCceEEeeccchhhhhh
Q 048627 167 LIVFDDVTC---FTQLESLIGSLDWL-TPVSRIIITTRNKQVLRN 207 (689)
Q Consensus 167 LlVlDdv~~---~~~~~~l~~~l~~~-~~g~~iliTtR~~~~~~~ 207 (689)
++++|+... ......+...+... ..+..++++|.+......
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999842 22222222222111 225678888887765554
No 468
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.12 E-value=0.029 Score=53.90 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++.|.|++|+||||+|.+++.....+-..++|++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3458999999999999999888776533335566665
No 469
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.053 Score=51.85 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHhhcCCcEEEEEcCCCC------hHHHHHHhcCCCCCCCCceEEeeccchhhhh
Q 048627 155 DLNFRRLSRIKILIVFDDVTC------FTQLESLIGSLDWLTPVSRIIITTRNKQVLR 206 (689)
Q Consensus 155 ~~l~~~l~~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~ 206 (689)
..+.+.|..++=|++||+-.. ....-.++..+. ..|..||++|-+-....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 345566778889999997532 223444444444 33889999998875443
No 470
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.11 E-value=0.034 Score=57.67 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=46.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCCcc-----
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVIPD----- 153 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~----- 153 (689)
...++|.|..|+|||||++.++..... +.+++. .+++ ....+....+.++..-... ..+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGE---R~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGE---RGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcC---ChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 357899999999999999988864332 334443 2322 2133444444443321100 011100
Q ss_pred ----hHHHHHhh--cCCcEEEEEcCCCChH
Q 048627 154 ----IDLNFRRL--SRIKILIVFDDVTCFT 177 (689)
Q Consensus 154 ----~~~l~~~l--~~~~~LlVlDdv~~~~ 177 (689)
+-.+.+++ +++++|+++||+....
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 11122222 5899999999995543
No 471
>PRK15115 response regulator GlrR; Provisional
Probab=95.10 E-value=0.48 Score=50.91 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..++|....+.++.+....-......|.|+|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888887777665543222333457799999999999999888764
No 472
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.10 E-value=0.025 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999998765
No 473
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.09 E-value=0.031 Score=52.83 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.5
Q ss_pred CCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 83 SKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 83 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..++++|+++|..|+|||||..++......
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999987654
No 474
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.07 E-value=0.11 Score=52.97 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh--ccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS--GDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 121 (689)
.++|.++|+.|+||||-..+++.++. ..-..+.+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999966666665543 3334555555
No 475
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.07 E-value=0.11 Score=51.94 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...|...|. .+-...+++-|+|+.|+||||||..+..........++|++
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 445666663 22233578999999999999999999988776667778887
No 476
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.07 E-value=0.023 Score=61.89 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=39.0
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+.++|.+..++.+...+.. .....|.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445799999999999887643 234567899999999999999998753
No 477
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.023 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999887776
No 478
>PRK14527 adenylate kinase; Provisional
Probab=95.05 E-value=0.022 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988753
No 479
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.04 E-value=0.012 Score=54.46 Aligned_cols=21 Identities=29% Similarity=0.075 Sum_probs=18.8
Q ss_pred EEEEEecCCCCHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~ 108 (689)
++.|+|+-|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 480
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.04 E-value=0.021 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+.++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998864
No 481
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.04 E-value=0.034 Score=50.19 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=31.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN 122 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 122 (689)
...|.|.|++|+|||+|..+.+++++++|...+.-.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 4789999999999999999999999988776665443
No 482
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.04 E-value=0.026 Score=60.30 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=25.5
Q ss_pred CCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 82 ESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 82 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++.+|+|.|++|+||||||+.++..+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44568899999999999999999998765
No 483
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=1 Score=44.50 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEeeccc-hhhhhhc-CcceEEEcCCCCHHHHHHHHHH
Q 048627 163 RIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEVEALEYHHALELFSR 230 (689)
Q Consensus 163 ~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~iliTtR~-~~~~~~~-~~~~~~~l~~L~~~~~~~lf~~ 230 (689)
+++-++|+||++... ...+|+..+..-.+++.+|++|.+ ..+++.. ...+.+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 456688999998653 466676666544555666666554 4455443 3346778866 66666666653
No 484
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.03 E-value=0.016 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
|+|.|++|+||||+|+.+.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 485
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.03 E-value=0.033 Score=56.93 Aligned_cols=51 Identities=27% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccce
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGT 117 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 117 (689)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.++..+...|..+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 34889888888776666422 3578999999999999999999987554433
No 486
>PHA02774 E1; Provisional
Probab=95.02 E-value=0.081 Score=56.47 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=31.3
Q ss_pred hhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 70 STVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 70 ~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.-+..+..++. +......+.|+|++|.|||.+|..+++-+.
T Consensus 419 ~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566666664 333345899999999999999999999875
No 487
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.01 E-value=0.14 Score=49.55 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=72.3
Q ss_pred ccccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 56 FQLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 56 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
..++...+.|+|-... .++..++.........+.++|..|+|||+-++.+++.. +..+.+. .++. +....
T Consensus 65 ~~~~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~----~~p~-~~a~~ 134 (297)
T COG2842 65 AALEKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIE----ADPS-YTALV 134 (297)
T ss_pred cccccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----ccceeec----CChh-hHHHH
Confidence 3455566778886643 33344443233334488899999999999888887754 3333333 2333 44444
Q ss_pred HHHHHHHHhcCCCCCC--cchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcC
Q 048627 136 LRQKLLLNLLKDENVI--PDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGS 185 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~ 185 (689)
++..+........... .....+..++.+..-++++|+.+.. ..++.+...
T Consensus 135 ~i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 135 LILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHH
Confidence 5555555444433222 6667777778888889999998753 234444433
No 488
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.064 Score=51.85 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
-+..++|||++|.|||-+|+.|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 367899999999999999999999876554
No 489
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.00 E-value=0.022 Score=50.80 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
+.|.++|+.|+||||+.+.++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999876555
No 490
>PRK14526 adenylate kinase; Provisional
Probab=94.99 E-value=0.089 Score=49.62 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=19.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q 048627 89 LGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|+|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 491
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.99 E-value=0.025 Score=57.21 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=37.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|.+...++|.+..++.+.-.+. ..+...+.+.|.+|+||||+|+.+..-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4456678999998887765332 1233468899999999999999998764
No 492
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.99 E-value=0.031 Score=61.65 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=45.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEeee
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLEN 122 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~ 122 (689)
....+.++|.+..++.+...+... +.+.++|++|+||||+|+.+++.+... |...+++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 344567899999888888877532 366699999999999999999887543 455555553
No 493
>PLN02348 phosphoribulokinase
Probab=94.98 E-value=0.026 Score=57.52 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.4
Q ss_pred CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 82 ESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 82 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..+.+.+|+|.|.+|+||||+|+.+.+.+...
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999999987643
No 494
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.023 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHH
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
..++++|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999886
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.98 E-value=0.054 Score=54.45 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+.+-+........+|+|.|++|+|||||+..+.......
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 333333334457899999999999999999999876544
No 496
>PLN02200 adenylate kinase family protein
Probab=94.97 E-value=0.023 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+.+|.|.|++|+||||+|+.++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 497
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.96 E-value=0.022 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..|+|.|+.|+||||+|+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 498
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.96 E-value=0.036 Score=57.61 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCcccchhhHHHHHHhhc-------C---CC--C----CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 62 KNQLVGVESTVEEIESLLG-------V---ES--K----DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~-------~---~~--~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..++||.+..++.+...+. . .. + ....|.++|++|+|||++|+.++..+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 3567999998888765441 1 11 1 13578999999999999999999876433
No 499
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.96 E-value=0.03 Score=53.87 Aligned_cols=47 Identities=26% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
+.+.|..+=....++.|.|++|+|||+||.+++...... -..++|++
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444553332345689999999999999999988764444 56777877
No 500
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.02 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+-|.|+|-||+||||+|.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3458899999999999999999643
Done!