Query 048627
Match_columns 689
No_of_seqs 383 out of 4448
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.3E-41 2.9E-45 365.1 21.8 295 66-374 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1E-35 3.4E-40 360.7 22.7 304 57-373 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.8E-35 6.1E-40 325.4 14.3 275 63-366 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.5E-34 1.9E-38 316.5 20.9 298 57-369 118-448 (591)
5 3rgz_A Protein brassinosteroid 99.9 2.5E-25 8.7E-30 253.9 18.6 263 417-687 409-724 (768)
6 4fcg_A Uncharacterized protein 99.9 6.4E-24 2.2E-28 216.6 20.1 225 425-679 80-313 (328)
7 3rgz_A Protein brassinosteroid 99.9 2.4E-24 8.2E-29 245.9 17.8 264 419-685 336-698 (768)
8 4fcg_A Uncharacterized protein 99.9 1E-23 3.4E-28 215.2 17.8 202 455-685 81-295 (328)
9 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-24 5.9E-29 219.5 11.4 250 426-685 50-309 (313)
10 3v47_A TOLL-like receptor 5B a 99.9 2.8E-23 9.6E-28 223.1 21.0 115 573-687 299-415 (455)
11 4eco_A Uncharacterized protein 99.9 2.7E-23 9.1E-28 231.7 19.7 266 400-681 305-601 (636)
12 3oja_B Anopheles plasmodium-re 99.9 1.2E-22 4.2E-27 225.1 24.8 253 416-681 65-338 (597)
13 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.3E-27 212.5 23.5 252 417-681 60-332 (390)
14 4ecn_A Leucine-rich repeat pro 99.9 6.9E-23 2.4E-27 232.2 21.4 274 401-685 492-823 (876)
15 4ecn_A Leucine-rich repeat pro 99.9 2E-22 7E-27 228.3 24.0 266 401-681 549-841 (876)
16 4eco_A Uncharacterized protein 99.9 4.7E-23 1.6E-27 229.7 17.5 274 401-685 250-583 (636)
17 2id5_A Lingo-1, leucine rich r 99.9 2.3E-22 8E-27 217.2 20.8 271 401-681 33-334 (477)
18 3v47_A TOLL-like receptor 5B a 99.9 3.5E-22 1.2E-26 214.5 21.6 276 400-684 30-388 (455)
19 2z7x_B TOLL-like receptor 1, v 99.9 5E-22 1.7E-26 217.1 23.2 275 400-685 21-461 (520)
20 1ogq_A PGIP-2, polygalacturona 99.9 6E-23 2.1E-27 208.1 12.8 227 455-686 50-287 (313)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-21 3.8E-26 216.3 23.5 275 400-685 52-490 (562)
22 3t6q_A CD180 antigen; protein- 99.9 8.4E-22 2.9E-26 219.7 21.5 270 401-680 34-389 (606)
23 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.5E-26 199.2 21.9 243 426-680 52-306 (330)
24 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-21 4.9E-26 217.9 22.1 252 421-684 302-562 (606)
25 3t6q_A CD180 antigen; protein- 99.9 1.9E-21 6.6E-26 216.8 23.0 256 417-682 269-562 (606)
26 4fmz_A Internalin; leucine ric 99.9 5.3E-21 1.8E-25 197.5 24.4 245 422-684 62-328 (347)
27 2id5_A Lingo-1, leucine rich r 99.9 1.6E-21 5.6E-26 210.6 21.1 247 426-681 32-310 (477)
28 3vq2_A TLR4, TOLL-like recepto 99.9 4.4E-21 1.5E-25 213.9 23.2 104 401-511 57-164 (606)
29 1xku_A Decorin; proteoglycan, 99.9 1E-20 3.4E-25 193.8 23.9 265 401-678 53-330 (330)
30 4fmz_A Internalin; leucine ric 99.9 1.2E-20 4.1E-25 194.8 24.0 241 421-680 105-346 (347)
31 3o6n_A APL1; leucine-rich repe 99.9 7E-21 2.4E-25 199.8 22.1 259 401-680 70-352 (390)
32 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-21 1E-25 197.9 18.5 249 418-678 70-331 (332)
33 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-21 3.2E-25 194.1 21.7 242 426-680 54-307 (332)
34 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-21 6.1E-26 212.8 16.8 247 426-684 21-416 (520)
35 3zyi_A Leucine-rich repeat-con 99.9 1.2E-20 4.2E-25 201.9 22.6 221 455-679 75-302 (452)
36 3zyj_A Leucine-rich repeat-con 99.9 1.5E-20 5.2E-25 200.4 22.9 221 455-679 64-291 (440)
37 3oja_B Anopheles plasmodium-re 99.9 6.7E-21 2.3E-25 211.2 19.7 247 424-684 49-317 (597)
38 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-21 1.2E-25 212.0 17.4 271 401-680 27-423 (549)
39 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-20 1.5E-24 196.7 24.4 241 422-687 81-358 (457)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9E-21 3.1E-25 209.0 19.3 247 426-684 52-445 (562)
41 2z66_A Variable lymphocyte rec 99.9 8.3E-21 2.8E-25 192.2 17.0 225 426-657 28-261 (306)
42 1o6v_A Internalin A; bacterial 99.9 3.7E-20 1.3E-24 199.0 22.7 238 422-681 86-323 (466)
43 3bz5_A Internalin-J, INLJ; leu 99.8 3.9E-20 1.3E-24 197.2 22.6 251 401-685 43-304 (457)
44 3j0a_A TOLL-like receptor 5; m 99.8 3.9E-20 1.3E-24 213.4 23.4 272 401-681 25-376 (844)
45 1ziw_A TOLL-like receptor 3; i 99.8 4.8E-20 1.7E-24 208.4 23.4 270 400-679 25-365 (680)
46 3j0a_A TOLL-like receptor 5; m 99.8 2.6E-20 8.9E-25 214.8 21.6 254 424-683 22-354 (844)
47 1ozn_A Reticulon 4 receptor; N 99.8 6.8E-20 2.3E-24 183.4 21.0 200 478-680 33-238 (285)
48 2z80_A TOLL-like receptor 2, v 99.8 5.9E-21 2E-25 197.4 12.8 253 426-685 52-319 (353)
49 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 9.8E-25 205.8 18.5 90 595-684 420-511 (570)
50 1o6v_A Internalin A; bacterial 99.8 1.3E-19 4.6E-24 194.6 22.4 244 422-681 130-389 (466)
51 1jl5_A Outer protein YOPM; leu 99.8 5.9E-20 2E-24 195.6 18.4 252 401-681 12-271 (454)
52 2z81_A CD282 antigen, TOLL-lik 99.8 7.6E-20 2.6E-24 201.4 19.3 69 418-491 90-162 (549)
53 2z63_A TOLL-like receptor 4, v 99.8 2.7E-20 9.2E-25 206.0 14.6 260 417-687 273-538 (570)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-19 1.2E-23 195.5 22.6 243 402-684 42-301 (622)
55 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.2E-24 181.5 16.7 200 455-657 32-238 (285)
56 3zyi_A Leucine-rich repeat-con 99.8 2.7E-19 9.1E-24 191.5 20.3 223 426-657 75-303 (452)
57 2z66_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 185.1 15.0 242 429-682 10-263 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-21 9.6E-26 196.4 4.3 240 420-677 28-272 (317)
59 1ziw_A TOLL-like receptor 3; i 99.8 8.6E-19 2.9E-23 198.1 24.6 272 402-682 250-575 (680)
60 3zyj_A Leucine-rich repeat-con 99.8 4E-19 1.4E-23 189.4 19.2 223 426-657 64-292 (440)
61 3oja_A Leucine-rich immune mol 99.8 2.2E-20 7.6E-25 200.9 9.6 233 425-675 33-270 (487)
62 1jl5_A Outer protein YOPM; leu 99.8 3E-18 1E-22 182.4 25.9 229 422-681 149-410 (454)
63 2z62_A TOLL-like receptor 4, v 99.8 4E-19 1.4E-23 176.9 17.2 221 461-686 13-243 (276)
64 1wwl_A Monocyte differentiatio 99.8 7.3E-21 2.5E-25 192.9 4.2 198 476-681 94-310 (312)
65 2z80_A TOLL-like receptor 2, v 99.8 2.1E-19 7.1E-24 185.8 10.9 246 401-657 53-314 (353)
66 1p9a_G Platelet glycoprotein I 99.8 6E-18 2E-22 169.0 19.5 192 456-656 11-207 (290)
67 3rfs_A Internalin B, repeat mo 99.8 3E-19 1E-23 177.1 9.9 195 456-685 42-240 (272)
68 3o53_A Protein LRIM1, AGAP0063 99.8 5.6E-20 1.9E-24 186.8 4.3 236 400-654 34-272 (317)
69 2o6q_A Variable lymphocyte rec 99.8 2.9E-17 9.8E-22 162.7 22.3 195 459-657 20-218 (270)
70 3oja_A Leucine-rich immune mol 99.8 2.2E-18 7.6E-23 185.3 14.9 211 455-680 34-250 (487)
71 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-17 4.4E-22 187.1 21.2 111 574-684 446-559 (635)
72 2qen_A Walker-type ATPase; unk 99.8 1.3E-17 4.3E-22 172.3 17.7 290 56-367 5-349 (350)
73 3g06_A SSPH2 (leucine-rich rep 99.7 8.1E-17 2.8E-21 176.6 23.0 230 401-666 62-307 (622)
74 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5.2E-22 167.8 15.5 193 456-661 42-234 (308)
75 3rfs_A Internalin B, repeat mo 99.7 3.8E-17 1.3E-21 161.9 17.1 182 498-687 39-225 (272)
76 4glp_A Monocyte differentiatio 99.7 1.5E-17 5.3E-22 168.2 14.1 201 476-681 90-308 (310)
77 2xwt_C Thyrotropin receptor; s 99.7 2E-17 7E-22 160.6 14.4 195 478-679 32-238 (239)
78 2fna_A Conserved hypothetical 99.7 7.1E-17 2.4E-21 167.2 19.3 289 56-366 6-356 (357)
79 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.8E-21 159.0 19.5 199 475-681 8-209 (290)
80 2o6q_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 155.6 21.1 195 427-633 17-218 (270)
81 2ca6_A RAN GTPase-activating p 99.7 3.5E-19 1.2E-23 186.5 0.1 237 415-683 21-319 (386)
82 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.1E-22 169.1 10.3 195 456-658 96-310 (312)
83 2ast_B S-phase kinase-associat 99.7 1.5E-18 5.2E-23 178.2 3.1 206 475-686 91-312 (336)
84 3cvr_A Invasion plasmid antige 99.7 1.1E-16 3.9E-21 173.2 17.1 186 456-666 60-253 (571)
85 2z62_A TOLL-like receptor 4, v 99.7 3E-16 1E-20 156.0 18.3 198 456-657 29-237 (276)
86 4ay9_X Follicle-stimulating ho 99.7 2.1E-16 7E-21 162.8 17.1 234 429-676 12-255 (350)
87 3m19_A Variable lymphocyte rec 99.7 8.2E-16 2.8E-20 150.3 19.3 174 456-657 15-192 (251)
88 1h6u_A Internalin H; cell adhe 99.7 3.6E-16 1.2E-20 157.7 13.9 193 422-633 37-230 (308)
89 2xwt_C Thyrotropin receptor; s 99.7 4.1E-16 1.4E-20 151.3 13.8 194 455-655 31-237 (239)
90 4g8a_A TOLL-like receptor 4; l 99.7 2.1E-15 7.1E-20 169.0 20.9 248 421-680 323-580 (635)
91 4ay9_X Follicle-stimulating ho 99.7 4.1E-16 1.4E-20 160.5 13.7 222 459-687 13-243 (350)
92 3cvr_A Invasion plasmid antige 99.7 1.2E-15 4.1E-20 165.2 17.5 188 426-643 59-253 (571)
93 3m19_A Variable lymphocyte rec 99.7 3.3E-15 1.1E-19 146.0 18.6 175 426-635 14-194 (251)
94 2ast_B S-phase kinase-associat 99.7 1.7E-17 5.7E-22 170.3 2.0 199 477-677 70-282 (336)
95 4ezg_A Putative uncharacterize 99.6 3.8E-16 1.3E-20 146.5 11.0 153 524-681 41-195 (197)
96 1w5s_A Origin recognition comp 99.6 1.7E-15 5.8E-20 160.1 15.3 281 60-351 19-371 (412)
97 1z7x_W Ribonuclease inhibitor; 99.6 4.1E-18 1.4E-22 183.2 -6.5 247 427-681 86-412 (461)
98 1m9s_A Internalin B; cell inva 99.6 1.8E-15 6.2E-20 165.8 13.3 191 456-660 22-213 (605)
99 2ca6_A RAN GTPase-activating p 99.6 9.4E-18 3.2E-22 175.6 -4.7 225 457-681 11-288 (386)
100 1h6t_A Internalin B; cell adhe 99.6 3.9E-15 1.3E-19 148.7 13.8 172 475-660 44-216 (291)
101 4glp_A Monocyte differentiatio 99.6 1.7E-15 5.8E-20 153.2 10.9 193 456-657 92-307 (310)
102 1z7x_W Ribonuclease inhibitor; 99.6 1E-17 3.5E-22 180.0 -6.2 279 401-681 29-355 (461)
103 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.4E-20 167.0 10.0 168 455-634 43-211 (605)
104 1h6t_A Internalin B; cell adhe 99.6 2.8E-15 9.4E-20 149.8 9.8 168 455-634 46-214 (291)
105 3goz_A Leucine-rich repeat-con 99.6 1.3E-16 4.5E-21 165.1 -0.5 232 419-657 15-297 (362)
106 2o6s_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 136.2 14.6 175 459-668 11-190 (208)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 5.2E-14 1.8E-18 134.2 15.3 108 573-680 57-166 (220)
108 1dce_A Protein (RAB geranylger 99.5 4.4E-17 1.5E-21 177.5 -7.8 194 475-673 347-566 (567)
109 2qby_B CDC6 homolog 3, cell di 99.5 8.2E-13 2.8E-17 137.9 25.0 271 62-351 19-339 (384)
110 1xeu_A Internalin C; cellular 99.5 8.2E-15 2.8E-19 143.9 8.8 130 523-660 59-188 (263)
111 3goz_A Leucine-rich repeat-con 99.5 6.7E-16 2.3E-20 159.8 0.3 244 431-682 3-299 (362)
112 4ezg_A Putative uncharacterize 99.5 2.4E-14 8.1E-19 134.2 10.4 150 477-657 44-194 (197)
113 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 131.2 16.7 129 527-657 40-172 (229)
114 2v9t_B SLIT homolog 2 protein 99.5 2.2E-13 7.6E-18 129.8 16.6 150 459-657 15-165 (220)
115 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6.2E-18 130.4 15.9 108 573-680 56-165 (220)
116 2o6s_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 127.3 17.9 153 526-685 27-183 (208)
117 1dce_A Protein (RAB geranylger 99.5 2.4E-16 8.1E-21 171.8 -4.9 191 456-651 350-567 (567)
118 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 139.6 10.6 170 498-682 17-187 (263)
119 2xot_A Amphoterin-induced prot 99.5 1.6E-13 5.4E-18 141.8 15.8 171 459-679 22-201 (361)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 3.3E-13 1.1E-17 128.6 16.1 151 459-657 15-166 (220)
121 1w8a_A SLIT protein; signaling 99.5 3.2E-13 1.1E-17 125.7 14.3 127 530-681 11-140 (192)
122 2qby_A CDC6 homolog 1, cell di 99.5 7.4E-13 2.5E-17 138.4 18.2 280 60-351 17-348 (386)
123 1fnn_A CDC6P, cell division co 99.5 1.5E-12 5.1E-17 136.3 19.8 279 61-351 15-351 (389)
124 2wfh_A SLIT homolog 2 protein 99.5 5.3E-13 1.8E-17 124.2 14.6 125 555-680 14-139 (193)
125 3ogk_B Coronatine-insensitive 99.5 5.5E-15 1.9E-19 164.1 0.5 110 573-682 403-528 (592)
126 2ell_A Acidic leucine-rich nuc 99.4 2.4E-13 8.3E-18 123.7 9.9 133 526-681 23-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.4E-18 121.7 8.9 128 526-676 16-149 (149)
128 2v1u_A Cell division control p 99.4 8.6E-12 2.9E-16 130.3 22.3 276 61-351 17-351 (387)
129 3ogk_B Coronatine-insensitive 99.4 1.4E-14 4.9E-19 160.7 0.6 254 422-681 160-477 (592)
130 4b8c_D Glucose-repressible alc 99.4 3E-14 1E-18 160.3 2.8 220 427-680 174-404 (727)
131 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.9E-17 133.9 15.7 148 530-681 21-177 (361)
132 3e6j_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 122.5 15.9 153 528-684 20-176 (229)
133 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4.3E-18 155.2 5.0 148 521-677 218-369 (727)
134 2o6r_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 116.6 13.8 131 529-684 9-141 (177)
135 1njg_A DNA polymerase III subu 99.4 5E-12 1.7E-16 123.0 14.2 193 59-266 19-230 (250)
136 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 117.1 8.9 130 523-679 15-152 (176)
137 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.9E-16 114.5 13.3 128 503-657 11-139 (192)
138 2p1m_B Transport inhibitor res 99.3 5.5E-14 1.9E-18 156.1 -5.1 61 619-679 455-518 (594)
139 2ell_A Acidic leucine-rich nuc 99.3 1E-11 3.6E-16 112.8 10.9 110 573-684 24-137 (168)
140 2je0_A Acidic leucine-rich nuc 99.3 8E-12 2.7E-16 111.0 8.9 109 573-683 17-129 (149)
141 2chg_A Replication factor C sm 99.3 4.1E-11 1.4E-15 114.6 14.6 187 59-263 13-203 (226)
142 2p1m_B Transport inhibitor res 99.2 8.3E-14 2.8E-18 154.7 -6.8 58 619-676 371-441 (594)
143 3g39_A Variable lymphocyte rec 99.2 6.3E-11 2.1E-15 107.6 11.5 105 552-657 10-115 (170)
144 2r9u_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 108.0 11.0 105 554-659 15-120 (174)
145 2wfh_A SLIT homolog 2 protein 99.2 2E-10 7E-15 106.6 13.5 106 551-657 31-139 (193)
146 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 110.4 7.8 132 495-657 14-153 (176)
147 1ds9_A Outer arm dynein; leuci 99.1 5.8E-13 2E-17 124.8 -6.6 131 545-680 42-185 (198)
148 2o6r_A Variable lymphocyte rec 99.1 7.5E-10 2.6E-14 101.4 14.2 111 526-657 27-137 (177)
149 1sxj_B Activator 1 37 kDa subu 99.1 1.7E-10 5.9E-15 117.1 10.3 185 60-264 18-210 (323)
150 3g39_A Variable lymphocyte rec 99.1 7E-10 2.4E-14 100.6 12.4 107 574-682 10-117 (170)
151 2r9u_A Variable lymphocyte rec 99.1 8.1E-10 2.8E-14 100.6 12.4 103 576-680 15-118 (174)
152 3sb4_A Hypothetical leucine ri 99.1 6.8E-10 2.3E-14 112.9 12.2 209 455-673 49-327 (329)
153 1iqp_A RFCS; clamp loader, ext 99.0 1E-09 3.5E-14 111.5 11.6 186 59-264 21-212 (327)
154 1hqc_A RUVB; extended AAA-ATPa 99.0 1.8E-08 6.2E-13 102.1 18.5 257 59-355 8-302 (324)
155 1ds9_A Outer arm dynein; leuci 98.9 4.9E-12 1.7E-16 118.4 -9.1 108 573-684 48-157 (198)
156 2ifg_A High affinity nerve gro 98.9 4E-09 1.4E-13 108.2 11.4 101 555-657 12-116 (347)
157 2chq_A Replication factor C sm 98.9 2.8E-08 9.7E-13 100.4 16.8 182 60-262 14-202 (319)
158 3sb4_A Hypothetical leucine ri 98.9 1.4E-08 4.7E-13 103.2 14.0 99 550-651 225-328 (329)
159 1jr3_A DNA polymerase III subu 98.9 1.5E-08 5.1E-13 105.0 13.8 192 60-264 13-221 (373)
160 3un9_A NLR family member X1; l 98.8 2.7E-10 9.2E-15 117.2 -1.3 154 527-680 72-252 (372)
161 1jbk_A CLPB protein; beta barr 98.8 2.1E-08 7.2E-13 93.0 11.3 50 60-111 19-68 (195)
162 3pfi_A Holliday junction ATP-d 98.8 5.5E-08 1.9E-12 99.1 14.8 257 60-357 26-319 (338)
163 1sxj_A Activator 1 95 kDa subu 98.8 1.1E-07 3.8E-12 102.3 16.7 192 59-263 35-252 (516)
164 4fdw_A Leucine rich hypothetic 98.8 3.2E-07 1.1E-11 95.3 19.2 237 418-676 128-379 (401)
165 2ra8_A Uncharacterized protein 98.7 7.5E-09 2.6E-13 105.4 6.0 133 547-680 168-320 (362)
166 3h4m_A Proteasome-activating n 98.7 1.3E-07 4.5E-12 93.7 14.2 181 59-262 13-229 (285)
167 3bos_A Putative DNA replicatio 98.7 1.6E-08 5.5E-13 97.6 7.2 175 60-264 25-217 (242)
168 1sxj_D Activator 1 41 kDa subu 98.7 2.2E-07 7.4E-12 95.4 16.0 194 59-262 33-233 (353)
169 3d8b_A Fidgetin-like protein 1 98.7 3E-07 1E-11 93.9 16.6 202 37-265 63-296 (357)
170 3te6_A Regulatory protein SIR3 98.7 5.8E-08 2E-12 95.9 10.5 163 64-232 21-211 (318)
171 2ifg_A High affinity nerve gro 98.7 6.2E-08 2.1E-12 99.2 10.7 91 541-633 22-116 (347)
172 3un9_A NLR family member X1; l 98.7 5.4E-10 1.8E-14 115.0 -5.4 85 573-657 155-252 (372)
173 1d2n_A N-ethylmaleimide-sensit 98.6 6.8E-07 2.3E-11 87.8 16.4 170 62-256 32-229 (272)
174 3eie_A Vacuolar protein sortin 98.6 7.4E-07 2.5E-11 89.8 17.0 184 59-264 14-228 (322)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.6 5.8E-07 2E-11 87.8 15.4 177 61-258 4-215 (262)
176 2z4s_A Chromosomal replication 98.6 1.1E-07 3.6E-12 100.0 10.3 180 63-261 105-303 (440)
177 1xwi_A SKD1 protein; VPS4B, AA 98.6 2.4E-06 8.2E-11 85.8 18.7 184 60-264 9-223 (322)
178 3uk6_A RUVB-like 2; hexameric 98.6 6.3E-07 2.2E-11 92.4 14.9 197 62-263 43-302 (368)
179 3syl_A Protein CBBX; photosynt 98.6 4.5E-07 1.5E-11 91.0 13.2 150 64-233 32-218 (309)
180 1sxj_E Activator 1 40 kDa subu 98.5 3.5E-07 1.2E-11 93.8 11.7 197 59-262 10-235 (354)
181 3b9p_A CG5977-PA, isoform A; A 98.5 2.7E-06 9.4E-11 84.7 17.9 198 44-264 3-233 (297)
182 4fdw_A Leucine rich hypothetic 98.5 2.1E-06 7.1E-11 89.1 17.4 211 456-681 136-359 (401)
183 2qp9_X Vacuolar protein sortin 98.5 2.1E-06 7.2E-11 87.5 17.0 184 59-264 47-261 (355)
184 3pvs_A Replication-associated 98.5 5.5E-07 1.9E-11 94.3 12.6 177 59-261 22-212 (447)
185 3vfd_A Spastin; ATPase, microt 98.5 2.3E-06 8E-11 88.6 16.8 184 59-264 111-326 (389)
186 1l8q_A Chromosomal replication 98.5 1.3E-06 4.5E-11 88.1 13.4 178 61-259 9-203 (324)
187 3u61_B DNA polymerase accessor 98.4 1.6E-06 5.4E-11 87.6 13.6 179 59-260 22-212 (324)
188 2zan_A Vacuolar protein sortin 98.4 4.8E-06 1.6E-10 87.5 16.8 185 59-264 130-345 (444)
189 3cf0_A Transitional endoplasmi 98.4 8.8E-06 3E-10 80.9 17.1 176 61-259 13-223 (301)
190 1a5t_A Delta prime, HOLB; zinc 98.3 8.8E-06 3E-10 82.2 16.4 173 69-264 8-205 (334)
191 2p65_A Hypothetical protein PF 98.3 1.7E-06 5.9E-11 79.4 9.3 50 61-112 20-69 (187)
192 4b4t_J 26S protease regulatory 98.3 2.3E-05 8E-10 79.3 17.4 173 63-259 148-356 (405)
193 2ra8_A Uncharacterized protein 98.2 3.4E-07 1.2E-11 93.2 3.2 16 421-436 134-149 (362)
194 1sxj_C Activator 1 40 kDa subu 98.2 6.2E-06 2.1E-10 83.8 12.4 181 61-260 23-208 (340)
195 1in4_A RUVB, holliday junction 98.2 3.5E-05 1.2E-09 77.8 17.7 258 61-359 23-318 (334)
196 3pxg_A Negative regulator of g 98.2 1.3E-05 4.5E-10 84.8 13.6 148 61-232 178-338 (468)
197 4b4t_H 26S protease regulatory 98.2 6.6E-05 2.3E-09 77.1 18.0 172 63-258 209-416 (467)
198 1qvr_A CLPB protein; coiled co 98.2 6.8E-06 2.3E-10 94.1 11.9 49 61-111 168-216 (854)
199 4b4t_L 26S protease subunit RP 98.1 4.7E-05 1.6E-09 78.4 16.6 173 62-258 180-388 (437)
200 4b4t_M 26S protease regulatory 98.1 1.1E-05 3.8E-10 83.0 11.6 172 62-257 180-387 (434)
201 3hu3_A Transitional endoplasmi 98.1 8.3E-06 2.8E-10 86.3 10.5 171 63-256 204-406 (489)
202 3n70_A Transport activator; si 98.1 5.5E-06 1.9E-10 72.4 7.5 47 64-110 2-48 (145)
203 1io0_A Tropomodulin; LRR prote 98.1 9.1E-07 3.1E-11 81.0 2.4 120 544-679 29-163 (185)
204 1lv7_A FTSH; alpha/beta domain 98.0 5.8E-05 2E-09 73.2 14.4 154 59-232 8-195 (257)
205 1r6b_X CLPA protein; AAA+, N-t 98.0 4.2E-05 1.4E-09 86.7 15.4 153 61-232 184-362 (758)
206 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.5E-11 75.7 3.7 33 575-607 63-96 (176)
207 3ec2_A DNA replication protein 98.0 9.1E-06 3.1E-10 74.0 7.2 43 69-111 20-63 (180)
208 2r62_A Cell division protease 98.0 6.8E-06 2.3E-10 80.4 6.8 155 59-232 7-196 (268)
209 4b4t_K 26S protease regulatory 98.0 7.6E-05 2.6E-09 76.8 14.6 171 63-257 172-379 (428)
210 1ofh_A ATP-dependent HSL prote 98.0 1.2E-05 4.2E-10 80.5 8.0 49 63-111 15-75 (310)
211 4b4t_I 26S protease regulatory 97.9 0.00012 4.1E-09 74.3 14.5 172 63-258 182-389 (437)
212 2gno_A DNA polymerase III, gam 97.9 3.9E-05 1.3E-09 75.9 10.8 146 67-232 1-152 (305)
213 2ce7_A Cell division protein F 97.9 0.0001 3.5E-09 77.2 14.2 175 61-257 14-221 (476)
214 3cf2_A TER ATPase, transitiona 97.9 6.7E-05 2.3E-09 83.3 13.0 174 63-259 204-409 (806)
215 3pxi_A Negative regulator of g 97.9 6.9E-05 2.4E-09 84.7 12.9 148 61-232 178-338 (758)
216 4fcw_A Chaperone protein CLPB; 97.9 8.1E-05 2.8E-09 74.4 11.8 58 64-121 18-82 (311)
217 1io0_A Tropomodulin; LRR prote 97.8 2.2E-06 7.7E-11 78.4 0.1 117 524-657 33-164 (185)
218 3rw6_A Nuclear RNA export fact 97.8 9.2E-06 3.2E-10 78.2 3.9 81 593-674 167-258 (267)
219 2w58_A DNAI, primosome compone 97.8 7.8E-05 2.7E-09 69.2 10.0 61 61-121 23-89 (202)
220 1ojl_A Transcriptional regulat 97.8 2.7E-05 9.1E-10 77.3 6.8 48 63-110 2-49 (304)
221 2bjv_A PSP operon transcriptio 97.8 3.6E-05 1.2E-09 75.0 7.2 49 63-111 6-54 (265)
222 3co5_A Putative two-component 97.7 5.7E-06 1.9E-10 72.1 0.7 48 64-111 5-52 (143)
223 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.4E-10 70.8 3.0 38 528-565 62-99 (176)
224 2c9o_A RUVB-like 1; hexameric 97.7 0.00057 1.9E-08 72.1 15.4 51 61-111 35-88 (456)
225 2kjq_A DNAA-related protein; s 97.7 2.9E-05 9.9E-10 67.9 4.3 37 85-121 35-71 (149)
226 1ixz_A ATP-dependent metallopr 97.6 0.00062 2.1E-08 65.6 13.8 152 61-232 14-199 (254)
227 4fs7_A Uncharacterized protein 97.6 0.0018 6.1E-08 67.0 17.4 81 592-677 293-376 (394)
228 1iy2_A ATP-dependent metallopr 97.6 0.00053 1.8E-08 67.2 12.4 177 59-257 36-245 (278)
229 2x8a_A Nuclear valosin-contain 97.6 0.0013 4.3E-08 64.1 14.9 151 63-232 10-191 (274)
230 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00047 1.6E-08 72.7 12.6 178 58-257 26-236 (499)
231 3pxi_A Negative regulator of g 97.5 0.00037 1.3E-08 78.8 12.4 150 63-232 491-675 (758)
232 3t15_A Ribulose bisphosphate c 97.5 0.00041 1.4E-08 68.4 11.0 30 84-113 34-63 (293)
233 3m6a_A ATP-dependent protease 97.5 0.00064 2.2E-08 73.2 13.4 50 64-113 82-135 (543)
234 4fs7_A Uncharacterized protein 97.5 0.0017 5.7E-08 67.2 15.1 234 419-672 155-393 (394)
235 3rw6_A Nuclear RNA export fact 97.4 0.00014 4.8E-09 69.9 5.6 67 617-684 167-237 (267)
236 4gt6_A Cell surface protein; l 97.4 0.007 2.4E-07 62.5 19.0 80 593-677 285-367 (394)
237 1ypw_A Transitional endoplasmi 97.4 0.00056 1.9E-08 77.3 10.7 150 62-232 203-385 (806)
238 1um8_A ATP-dependent CLP prote 97.3 0.00067 2.3E-08 69.7 9.6 26 86-111 72-97 (376)
239 2qgz_A Helicase loader, putati 97.2 0.00069 2.4E-08 67.1 8.3 60 62-121 123-188 (308)
240 3dm5_A SRP54, signal recogniti 96.9 0.011 3.9E-07 60.7 14.0 37 85-121 99-135 (443)
241 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0019 6.4E-08 73.1 8.9 49 63-111 458-513 (758)
242 4h09_A Hypothetical leucine ri 96.8 0.12 4E-06 52.8 21.0 99 573-675 240-341 (379)
243 1g5t_A COB(I)alamin adenosyltr 96.8 0.0018 6.2E-08 58.4 6.1 111 87-202 29-163 (196)
244 3cf2_A TER ATPase, transitiona 96.8 0.0023 8E-08 71.1 8.2 172 63-257 477-683 (806)
245 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0024 8.1E-08 62.4 6.9 33 86-121 123-155 (331)
246 4gt6_A Cell surface protein; l 96.7 0.093 3.2E-06 53.9 19.4 82 592-677 261-344 (394)
247 1u0j_A DNA replication protein 96.6 0.0055 1.9E-07 58.3 8.2 38 73-110 91-128 (267)
248 2cvh_A DNA repair and recombin 96.6 0.0082 2.8E-07 56.1 9.5 44 75-121 9-52 (220)
249 2orw_A Thymidine kinase; TMTK, 96.5 0.00099 3.4E-08 60.4 2.7 26 87-112 4-29 (184)
250 3hws_A ATP-dependent CLP prote 96.5 0.0024 8.3E-08 65.1 5.6 47 65-111 17-76 (363)
251 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0015 5.2E-08 59.2 3.3 83 547-629 37-135 (197)
252 3e70_C DPA, signal recognition 96.4 0.013 4.3E-07 58.3 10.3 29 85-113 128-156 (328)
253 1rz3_A Hypothetical protein rb 96.4 0.0049 1.7E-07 56.8 6.8 44 68-111 3-47 (201)
254 1jr3_D DNA polymerase III, del 96.4 0.036 1.2E-06 55.8 13.6 155 85-262 17-183 (343)
255 3jvv_A Twitching mobility prot 96.4 0.0012 3.9E-08 66.7 2.2 110 87-205 124-234 (356)
256 2xxa_A Signal recognition part 96.3 0.025 8.7E-07 58.5 12.1 51 71-121 78-136 (433)
257 1qvr_A CLPB protein; coiled co 96.3 0.014 4.6E-07 66.8 11.1 49 64-112 559-614 (854)
258 3c8u_A Fructokinase; YP_612366 96.3 0.004 1.4E-07 57.8 5.6 41 71-111 7-47 (208)
259 1qhx_A CPT, protein (chloramph 96.3 0.002 7E-08 58.0 3.4 25 87-111 4-28 (178)
260 1zu4_A FTSY; GTPase, signal re 96.3 0.014 4.7E-07 57.9 9.4 36 85-120 104-139 (320)
261 3hr8_A Protein RECA; alpha and 96.2 0.014 4.9E-07 58.4 9.3 50 72-121 46-96 (356)
262 3sr0_A Adenylate kinase; phosp 96.2 0.0065 2.2E-07 56.0 6.3 23 88-110 2-24 (206)
263 2r44_A Uncharacterized protein 96.2 0.0021 7.2E-08 64.7 3.0 47 63-113 27-73 (331)
264 3umf_A Adenylate kinase; rossm 96.2 0.0093 3.2E-07 55.2 7.0 27 84-110 27-53 (217)
265 3kb2_A SPBC2 prophage-derived 96.1 0.0033 1.1E-07 56.2 3.6 25 87-111 2-26 (173)
266 1odf_A YGR205W, hypothetical 3 96.1 0.0071 2.4E-07 59.0 6.2 31 82-112 27-57 (290)
267 1vma_A Cell division protein F 96.0 0.036 1.2E-06 54.4 10.9 52 69-120 81-138 (306)
268 1ex7_A Guanylate kinase; subst 96.0 0.0027 9.3E-08 57.3 2.5 30 87-116 2-31 (186)
269 3io5_A Recombination and repai 96.0 0.025 8.5E-07 55.0 9.3 34 88-121 30-65 (333)
270 3kl4_A SRP54, signal recogniti 96.0 0.017 5.8E-07 59.4 8.7 37 85-121 96-132 (433)
271 1nks_A Adenylate kinase; therm 96.0 0.0076 2.6E-07 55.0 5.6 27 87-113 2-28 (194)
272 3trf_A Shikimate kinase, SK; a 96.0 0.0042 1.4E-07 56.3 3.7 26 86-111 5-30 (185)
273 3ice_A Transcription terminati 95.9 0.0023 7.7E-08 63.9 1.9 27 86-112 174-200 (422)
274 3uie_A Adenylyl-sulfate kinase 95.9 0.0074 2.5E-07 55.5 5.3 27 85-111 24-50 (200)
275 3vaa_A Shikimate kinase, SK; s 95.9 0.0045 1.5E-07 56.9 3.8 26 86-111 25-50 (199)
276 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0045 1.5E-07 65.3 4.1 45 63-111 22-66 (500)
277 1ly1_A Polynucleotide kinase; 95.8 0.005 1.7E-07 55.5 3.7 22 87-108 3-24 (181)
278 1xjc_A MOBB protein homolog; s 95.8 0.0083 2.8E-07 52.9 4.8 29 85-113 3-31 (169)
279 1tue_A Replication protein E1; 95.8 0.0066 2.3E-07 54.9 4.2 45 67-112 40-84 (212)
280 1g8p_A Magnesium-chelatase 38 95.8 0.0044 1.5E-07 62.8 3.4 51 59-111 20-70 (350)
281 1j8m_F SRP54, signal recogniti 95.8 0.021 7E-07 56.0 8.0 36 86-121 98-133 (297)
282 1v5w_A DMC1, meiotic recombina 95.8 0.027 9.2E-07 56.6 9.1 49 73-121 109-163 (343)
283 3fwy_A Light-independent proto 95.8 0.0087 3E-07 59.1 5.2 38 84-121 46-83 (314)
284 3lw7_A Adenylate kinase relate 95.8 0.0049 1.7E-07 55.3 3.2 23 87-110 2-24 (179)
285 2rhm_A Putative kinase; P-loop 95.7 0.0076 2.6E-07 55.0 4.5 25 86-110 5-29 (193)
286 3tlx_A Adenylate kinase 2; str 95.7 0.0074 2.5E-07 57.5 4.3 40 71-110 14-53 (243)
287 2yvu_A Probable adenylyl-sulfa 95.7 0.011 3.8E-07 53.6 5.2 28 85-112 12-39 (186)
288 1kgd_A CASK, peripheral plasma 95.7 0.0056 1.9E-07 55.2 3.2 26 86-111 5-30 (180)
289 1kht_A Adenylate kinase; phosp 95.6 0.01 3.5E-07 54.0 5.0 26 87-112 4-29 (192)
290 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0098 3.3E-07 59.0 4.9 48 67-114 3-52 (359)
291 3b9q_A Chloroplast SRP recepto 95.6 0.043 1.5E-06 53.8 9.5 36 85-121 99-134 (302)
292 3bh0_A DNAB-like replicative h 95.6 0.017 5.9E-07 57.3 6.8 64 72-143 55-118 (315)
293 1sky_E F1-ATPase, F1-ATP synth 95.6 0.016 5.3E-07 59.9 6.4 30 88-117 153-182 (473)
294 3iij_A Coilin-interacting nucl 95.5 0.0059 2E-07 55.1 2.9 26 86-111 11-36 (180)
295 1zp6_A Hypothetical protein AT 95.5 0.0079 2.7E-07 54.8 3.7 24 86-109 9-32 (191)
296 1zuh_A Shikimate kinase; alpha 95.5 0.0082 2.8E-07 53.4 3.7 26 86-111 7-32 (168)
297 2ze6_A Isopentenyl transferase 95.5 0.0083 2.8E-07 57.5 4.0 25 87-111 2-26 (253)
298 1kag_A SKI, shikimate kinase I 95.5 0.0059 2E-07 54.6 2.8 25 87-111 5-29 (173)
299 4eun_A Thermoresistant glucoki 95.5 0.011 3.8E-07 54.3 4.7 26 85-110 28-53 (200)
300 1g41_A Heat shock protein HSLU 95.5 0.014 4.8E-07 60.1 5.8 51 63-113 15-77 (444)
301 3tau_A Guanylate kinase, GMP k 95.5 0.0073 2.5E-07 56.0 3.4 28 85-112 7-34 (208)
302 3a00_A Guanylate kinase, GMP k 95.5 0.0068 2.3E-07 55.0 3.1 30 87-116 2-31 (186)
303 3t61_A Gluconokinase; PSI-biol 95.5 0.0066 2.3E-07 55.9 3.0 25 86-110 18-42 (202)
304 2og2_A Putative signal recogni 95.4 0.042 1.4E-06 55.2 8.9 36 85-121 156-191 (359)
305 2plr_A DTMP kinase, probable t 95.4 0.016 5.3E-07 53.8 5.5 28 87-114 5-32 (213)
306 1gvn_B Zeta; postsegregational 95.4 0.016 5.4E-07 56.6 5.7 28 84-111 31-58 (287)
307 1nn5_A Similar to deoxythymidy 95.4 0.014 4.9E-07 54.2 5.2 28 86-113 9-36 (215)
308 2c95_A Adenylate kinase 1; tra 95.4 0.0095 3.3E-07 54.5 3.8 26 86-111 9-34 (196)
309 1tev_A UMP-CMP kinase; ploop, 95.4 0.01 3.4E-07 54.3 4.0 26 86-111 3-28 (196)
310 1via_A Shikimate kinase; struc 95.4 0.0087 3E-07 53.7 3.4 24 88-111 6-29 (175)
311 2jaq_A Deoxyguanosine kinase; 95.3 0.0091 3.1E-07 55.0 3.5 24 88-111 2-25 (205)
312 1knq_A Gluconate kinase; ALFA/ 95.3 0.013 4.5E-07 52.4 4.5 26 85-110 7-32 (175)
313 3tqc_A Pantothenate kinase; bi 95.3 0.015 5.1E-07 57.4 5.1 47 65-111 69-117 (321)
314 2iyv_A Shikimate kinase, SK; t 95.3 0.0079 2.7E-07 54.4 3.0 25 87-111 3-27 (184)
315 3ney_A 55 kDa erythrocyte memb 95.3 0.009 3.1E-07 54.3 3.3 28 85-112 18-45 (197)
316 2dr3_A UPF0273 protein PH0284; 95.3 0.015 5.3E-07 55.3 5.2 36 86-121 23-58 (247)
317 2bwj_A Adenylate kinase 5; pho 95.3 0.011 3.6E-07 54.3 3.8 26 86-111 12-37 (199)
318 4h09_A Hypothetical leucine ri 95.3 1.3 4.3E-05 45.0 20.0 107 548-660 237-348 (379)
319 2vli_A Antibiotic resistance p 95.3 0.0072 2.5E-07 54.6 2.6 26 86-111 5-30 (183)
320 1ukz_A Uridylate kinase; trans 95.3 0.013 4.5E-07 54.0 4.4 27 84-110 13-39 (203)
321 2cdn_A Adenylate kinase; phosp 95.3 0.013 4.5E-07 53.9 4.3 27 85-111 19-45 (201)
322 3cm0_A Adenylate kinase; ATP-b 95.3 0.012 4.2E-07 53.2 4.1 26 86-111 4-29 (186)
323 2qor_A Guanylate kinase; phosp 95.3 0.0092 3.1E-07 55.1 3.2 27 85-111 11-37 (204)
324 3p32_A Probable GTPase RV1496/ 95.2 0.028 9.4E-07 56.9 7.0 49 72-120 65-113 (355)
325 1y63_A LMAJ004144AAA protein; 95.2 0.011 3.9E-07 53.4 3.7 24 86-109 10-33 (184)
326 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 55.4 3.6 26 86-111 4-29 (220)
327 2v3c_C SRP54, signal recogniti 95.2 0.028 9.6E-07 58.1 7.0 37 85-121 98-134 (432)
328 1e6c_A Shikimate kinase; phosp 95.2 0.0091 3.1E-07 53.3 2.9 25 87-111 3-27 (173)
329 1qf9_A UMP/CMP kinase, protein 95.2 0.014 4.7E-07 53.2 4.1 26 86-111 6-31 (194)
330 2pt5_A Shikimate kinase, SK; a 95.1 0.013 4.6E-07 51.9 3.8 24 88-111 2-25 (168)
331 2wwf_A Thymidilate kinase, put 95.1 0.02 6.7E-07 53.1 5.0 28 86-113 10-37 (212)
332 1uf9_A TT1252 protein; P-loop, 95.1 0.015 5E-07 53.6 4.1 26 84-109 6-31 (203)
333 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.014 4.7E-07 56.2 4.0 26 86-111 4-29 (260)
334 1uj2_A Uridine-cytidine kinase 95.1 0.014 4.7E-07 55.9 4.0 28 84-111 20-47 (252)
335 2j37_W Signal recognition part 95.0 0.093 3.2E-06 55.2 10.4 37 85-121 100-136 (504)
336 4a1f_A DNAB helicase, replicat 95.0 0.029 1E-06 55.7 6.2 72 67-146 28-99 (338)
337 1u94_A RECA protein, recombina 95.0 0.021 7.3E-07 57.4 5.2 50 72-121 48-98 (356)
338 2zr9_A Protein RECA, recombina 95.0 0.022 7.6E-07 57.2 5.4 50 72-121 46-96 (349)
339 1n0w_A DNA repair protein RAD5 95.0 0.025 8.6E-07 53.7 5.5 48 74-121 12-65 (243)
340 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.02 6.7E-07 54.0 4.7 36 86-121 23-58 (235)
341 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5.1E-07 52.9 3.7 22 87-108 3-24 (189)
342 2ewv_A Twitching motility prot 94.9 0.029 9.9E-07 57.0 6.1 110 85-203 135-245 (372)
343 3asz_A Uridine kinase; cytidin 94.9 0.019 6.4E-07 53.3 4.4 27 85-111 5-31 (211)
344 1cke_A CK, MSSA, protein (cyti 94.9 0.015 5.1E-07 54.7 3.7 25 87-111 6-30 (227)
345 4a74_A DNA repair and recombin 94.9 0.032 1.1E-06 52.4 6.1 36 75-110 14-49 (231)
346 3tr0_A Guanylate kinase, GMP k 94.9 0.015 5.3E-07 53.5 3.7 25 86-110 7-31 (205)
347 1zak_A Adenylate kinase; ATP:A 94.9 0.014 4.7E-07 54.7 3.3 26 86-111 5-30 (222)
348 1ye8_A Protein THEP1, hypothet 94.9 0.017 5.8E-07 51.8 3.7 24 88-111 2-25 (178)
349 2ck3_D ATP synthase subunit be 94.9 0.067 2.3E-06 55.1 8.5 53 87-143 154-207 (482)
350 2j41_A Guanylate kinase; GMP, 94.9 0.016 5.4E-07 53.5 3.7 25 86-110 6-30 (207)
351 2r6a_A DNAB helicase, replicat 94.9 0.14 4.9E-06 53.5 11.4 37 85-121 202-239 (454)
352 2pbr_A DTMP kinase, thymidylat 94.9 0.016 5.6E-07 52.7 3.7 24 88-111 2-25 (195)
353 2if2_A Dephospho-COA kinase; a 94.8 0.016 5.4E-07 53.4 3.6 21 88-108 3-23 (204)
354 1rj9_A FTSY, signal recognitio 94.8 0.027 9.1E-07 55.3 5.3 36 85-121 101-136 (304)
355 2qt1_A Nicotinamide riboside k 94.8 0.018 6.2E-07 53.2 3.9 26 85-110 20-45 (207)
356 2hf9_A Probable hydrogenase ni 94.8 0.035 1.2E-06 51.9 6.1 43 69-113 23-65 (226)
357 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.01 3.6E-07 59.2 2.2 103 87-202 172-275 (330)
358 2bbw_A Adenylate kinase 4, AK4 94.8 0.017 5.8E-07 55.0 3.7 26 86-111 27-52 (246)
359 2r8r_A Sensor protein; KDPD, P 94.7 0.035 1.2E-06 51.2 5.5 35 87-121 7-41 (228)
360 3fb4_A Adenylate kinase; psych 94.7 0.018 6.2E-07 53.6 3.7 23 88-110 2-24 (216)
361 2grj_A Dephospho-COA kinase; T 94.7 0.02 6.7E-07 52.0 3.8 26 85-110 11-36 (192)
362 1zd8_A GTP:AMP phosphotransfer 94.7 0.018 6.1E-07 54.1 3.7 25 86-110 7-31 (227)
363 2wsm_A Hydrogenase expression/ 94.7 0.027 9.4E-07 52.5 5.0 45 67-113 13-57 (221)
364 3l0o_A Transcription terminati 94.7 0.0042 1.5E-07 61.8 -0.7 26 87-112 176-201 (427)
365 2pez_A Bifunctional 3'-phospho 94.7 0.033 1.1E-06 50.0 5.2 26 86-111 5-30 (179)
366 3upu_A ATP-dependent DNA helic 94.7 0.11 3.9E-06 54.5 10.1 29 87-115 46-74 (459)
367 3rfe_A Platelet glycoprotein I 94.7 0.062 2.1E-06 45.2 6.5 56 600-657 12-68 (130)
368 2q6t_A DNAB replication FORK h 94.7 0.12 4E-06 54.0 10.1 66 72-145 187-253 (444)
369 1gtv_A TMK, thymidylate kinase 94.7 0.013 4.6E-07 54.3 2.6 25 88-112 2-26 (214)
370 2px0_A Flagellar biosynthesis 94.6 0.035 1.2E-06 54.3 5.6 37 85-121 104-141 (296)
371 1jjv_A Dephospho-COA kinase; P 94.6 0.019 6.5E-07 53.0 3.5 22 87-108 3-24 (206)
372 2z0h_A DTMP kinase, thymidylat 94.6 0.021 7.2E-07 52.2 3.7 25 88-112 2-26 (197)
373 2j9r_A Thymidine kinase; TK1, 94.6 0.084 2.9E-06 48.2 7.5 111 85-203 27-139 (214)
374 1pgv_A TMD-1, tropomodulin TMD 94.6 0.021 7.3E-07 51.6 3.5 106 573-678 41-168 (197)
375 1lvg_A Guanylate kinase, GMP k 94.5 0.016 5.6E-07 53.0 2.8 25 87-111 5-29 (198)
376 3k1j_A LON protease, ATP-depen 94.5 0.02 6.8E-07 62.5 3.9 49 61-113 39-87 (604)
377 3bgw_A DNAB-like replicative h 94.5 0.14 4.7E-06 53.3 10.1 49 72-121 184-232 (444)
378 3dl0_A Adenylate kinase; phosp 94.5 0.022 7.4E-07 53.1 3.6 23 88-110 2-24 (216)
379 1np6_A Molybdopterin-guanine d 94.5 0.036 1.2E-06 49.3 4.8 27 86-112 6-32 (174)
380 2r2a_A Uncharacterized protein 94.5 0.059 2E-06 49.1 6.3 22 88-109 7-28 (199)
381 4gp7_A Metallophosphoesterase; 94.4 0.019 6.5E-07 51.2 2.9 21 86-106 9-29 (171)
382 3d3q_A TRNA delta(2)-isopenten 94.4 0.023 7.9E-07 56.2 3.8 25 87-111 8-32 (340)
383 2b8t_A Thymidine kinase; deoxy 94.4 0.041 1.4E-06 51.1 5.2 37 85-121 11-47 (223)
384 3nwj_A ATSK2; P loop, shikimat 94.4 0.019 6.5E-07 54.6 3.0 25 87-111 49-73 (250)
385 2p5t_B PEZT; postsegregational 94.4 0.02 6.8E-07 54.8 3.2 27 85-111 31-57 (253)
386 3r20_A Cytidylate kinase; stru 94.4 0.024 8.2E-07 53.0 3.6 26 86-111 9-34 (233)
387 1m7g_A Adenylylsulfate kinase; 94.4 0.029 9.8E-07 52.0 4.1 26 86-111 25-50 (211)
388 2v54_A DTMP kinase, thymidylat 94.4 0.023 8E-07 52.2 3.5 25 86-110 4-28 (204)
389 2f6r_A COA synthase, bifunctio 94.4 0.026 9E-07 54.9 4.0 25 84-108 73-97 (281)
390 3be4_A Adenylate kinase; malar 94.3 0.023 7.8E-07 52.9 3.4 25 87-111 6-30 (217)
391 1fx0_B ATP synthase beta chain 94.3 0.071 2.4E-06 55.1 7.2 52 87-142 166-218 (498)
392 4e22_A Cytidylate kinase; P-lo 94.3 0.023 8E-07 54.3 3.5 26 86-111 27-52 (252)
393 1xp8_A RECA protein, recombina 94.3 0.041 1.4E-06 55.5 5.4 51 71-121 58-109 (366)
394 3end_A Light-independent proto 94.3 0.039 1.3E-06 54.5 5.2 38 84-121 39-76 (307)
395 3aez_A Pantothenate kinase; tr 94.3 0.027 9.2E-07 55.6 3.9 29 84-112 88-116 (312)
396 3dzd_A Transcriptional regulat 94.3 0.91 3.1E-05 45.8 15.4 50 62-111 128-177 (368)
397 1yrb_A ATP(GTP)binding protein 94.3 0.045 1.6E-06 52.6 5.5 36 85-121 13-48 (262)
398 1cp2_A CP2, nitrogenase iron p 94.3 0.046 1.6E-06 52.8 5.6 35 87-121 2-36 (269)
399 2z43_A DNA repair and recombin 94.3 0.045 1.5E-06 54.5 5.6 49 73-121 94-148 (324)
400 1ak2_A Adenylate kinase isoenz 94.2 0.029 9.8E-07 52.9 3.9 26 86-111 16-41 (233)
401 2jeo_A Uridine-cytidine kinase 94.2 0.029 1E-06 53.4 3.9 26 85-110 24-49 (245)
402 1e4v_A Adenylate kinase; trans 94.2 0.029 1E-06 52.1 3.9 23 88-110 2-24 (214)
403 3a8t_A Adenylate isopentenyltr 94.2 0.02 6.7E-07 56.5 2.7 26 86-111 40-65 (339)
404 1s96_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 52.5 3.4 26 86-111 16-41 (219)
405 3exa_A TRNA delta(2)-isopenten 94.2 0.028 9.5E-07 54.7 3.6 25 86-110 3-27 (322)
406 1vht_A Dephospho-COA kinase; s 94.2 0.031 1.1E-06 52.0 3.9 23 86-108 4-26 (218)
407 1a7j_A Phosphoribulokinase; tr 94.2 0.018 6.1E-07 56.3 2.3 27 85-111 4-30 (290)
408 3crm_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 55.1 3.8 25 87-111 6-30 (323)
409 2ehv_A Hypothetical protein PH 94.1 0.037 1.3E-06 52.7 4.5 36 86-121 30-66 (251)
410 2xb4_A Adenylate kinase; ATP-b 94.1 0.03 1E-06 52.4 3.7 23 88-110 2-24 (223)
411 3ake_A Cytidylate kinase; CMP 94.1 0.032 1.1E-06 51.5 3.9 24 88-111 4-27 (208)
412 3foz_A TRNA delta(2)-isopenten 94.1 0.032 1.1E-06 54.2 3.8 26 85-110 9-34 (316)
413 2eyu_A Twitching motility prot 94.1 0.045 1.5E-06 52.4 4.9 110 85-203 24-134 (261)
414 2ffh_A Protein (FFH); SRP54, s 94.1 0.19 6.4E-06 51.6 9.7 36 85-120 97-132 (425)
415 1z6g_A Guanylate kinase; struc 94.0 0.025 8.6E-07 52.7 3.0 25 86-110 23-47 (218)
416 1znw_A Guanylate kinase, GMP k 94.0 0.029 1E-06 51.8 3.4 26 86-111 20-45 (207)
417 1cr0_A DNA primase/helicase; R 94.0 0.047 1.6E-06 53.6 5.0 36 86-121 35-71 (296)
418 1nlf_A Regulatory protein REPA 94.0 0.055 1.9E-06 52.6 5.4 27 86-112 30-56 (279)
419 1htw_A HI0065; nucleotide-bind 93.9 0.04 1.4E-06 48.2 3.9 26 85-110 32-57 (158)
420 1sq5_A Pantothenate kinase; P- 93.9 0.068 2.3E-06 52.8 5.9 28 84-111 78-105 (308)
421 3cmu_A Protein RECA, recombina 93.9 0.08 2.7E-06 64.4 7.5 48 74-121 1414-1462(2050)
422 2qmh_A HPR kinase/phosphorylas 93.9 0.028 9.5E-07 50.6 2.7 25 86-110 34-58 (205)
423 2afh_E Nitrogenase iron protei 93.9 0.058 2E-06 52.8 5.4 35 87-121 3-37 (289)
424 1ls1_A Signal recognition part 93.8 0.056 1.9E-06 52.9 5.1 36 85-120 97-132 (295)
425 1g8f_A Sulfate adenylyltransfe 93.8 0.056 1.9E-06 56.8 5.3 48 65-112 374-421 (511)
426 3hjn_A DTMP kinase, thymidylat 93.8 0.089 3E-06 47.9 6.0 33 88-120 2-34 (197)
427 3e1s_A Exodeoxyribonuclease V, 93.7 0.15 5E-06 55.0 8.6 33 87-119 205-237 (574)
428 2i3b_A HCR-ntpase, human cance 93.7 0.034 1.2E-06 50.3 3.1 24 88-111 3-26 (189)
429 3rfe_A Platelet glycoprotein I 93.7 0.099 3.4E-06 43.9 5.7 53 555-608 12-67 (130)
430 1ltq_A Polynucleotide kinase; 93.7 0.04 1.4E-06 54.3 3.8 23 87-109 3-25 (301)
431 2f1r_A Molybdopterin-guanine d 93.6 0.025 8.6E-07 50.2 2.1 27 87-113 3-29 (171)
432 1pzn_A RAD51, DNA repair and r 93.6 0.076 2.6E-06 53.4 5.8 37 74-110 119-155 (349)
433 2zts_A Putative uncharacterize 93.6 0.036 1.2E-06 52.8 3.3 36 86-121 30-66 (251)
434 1svm_A Large T antigen; AAA+ f 93.5 0.056 1.9E-06 54.7 4.6 28 84-111 167-194 (377)
435 4eaq_A DTMP kinase, thymidylat 93.4 0.058 2E-06 50.6 4.3 28 85-112 25-52 (229)
436 2yhs_A FTSY, cell division pro 93.4 0.067 2.3E-06 55.6 5.0 36 85-121 292-327 (503)
437 2qe7_A ATP synthase subunit al 93.4 0.061 2.1E-06 55.7 4.6 84 87-175 163-265 (502)
438 2fz4_A DNA repair protein RAD2 93.4 0.46 1.6E-05 44.7 10.5 38 68-110 95-132 (237)
439 4edh_A DTMP kinase, thymidylat 93.4 0.14 4.9E-06 47.2 6.8 28 86-113 6-33 (213)
440 3eph_A TRNA isopentenyltransfe 93.3 0.055 1.9E-06 54.7 4.0 25 87-111 3-27 (409)
441 2r9v_A ATP synthase subunit al 93.3 0.068 2.3E-06 55.4 4.7 84 87-175 176-278 (515)
442 3lnc_A Guanylate kinase, GMP k 93.3 0.029 9.9E-07 52.8 1.9 25 86-110 27-52 (231)
443 2axn_A 6-phosphofructo-2-kinas 93.1 0.082 2.8E-06 56.2 5.4 30 85-114 34-63 (520)
444 2ocp_A DGK, deoxyguanosine kin 93.1 0.064 2.2E-06 50.8 4.1 26 86-111 2-27 (241)
445 1q3t_A Cytidylate kinase; nucl 93.1 0.062 2.1E-06 50.7 4.0 27 85-111 15-41 (236)
446 3oaa_A ATP synthase subunit al 93.0 0.083 2.8E-06 54.6 5.0 81 87-175 163-265 (513)
447 1ypw_A Transitional endoplasmi 93.0 0.051 1.7E-06 61.3 3.8 53 61-113 475-538 (806)
448 3lda_A DNA repair protein RAD5 93.0 0.099 3.4E-06 53.4 5.6 49 73-121 165-219 (400)
449 3io3_A DEHA2D07832P; chaperone 93.0 0.1 3.5E-06 52.2 5.6 38 84-121 16-55 (348)
450 3zvl_A Bifunctional polynucleo 93.0 0.042 1.4E-06 56.8 2.9 26 85-110 257-282 (416)
451 2p67_A LAO/AO transport system 93.0 0.13 4.3E-06 51.6 6.3 30 84-113 54-83 (341)
452 4dzz_A Plasmid partitioning pr 92.9 0.084 2.9E-06 48.4 4.6 35 87-121 2-37 (206)
453 3b85_A Phosphate starvation-in 92.9 0.048 1.7E-06 50.2 2.8 23 87-109 23-45 (208)
454 4hlc_A DTMP kinase, thymidylat 92.9 0.1 3.5E-06 47.9 5.0 29 87-115 3-31 (205)
455 3ea0_A ATPase, para family; al 92.9 0.12 4.1E-06 48.9 5.8 37 85-121 3-41 (245)
456 2i1q_A DNA repair and recombin 92.9 0.11 3.7E-06 51.7 5.6 38 73-110 85-122 (322)
457 3vr4_D V-type sodium ATPase su 92.8 0.073 2.5E-06 54.5 4.2 25 88-112 153-177 (465)
458 2onk_A Molybdate/tungstate ABC 92.8 0.06 2.1E-06 50.8 3.3 24 87-110 25-48 (240)
459 1oix_A RAS-related protein RAB 92.8 0.081 2.8E-06 48.0 4.1 24 86-109 29-52 (191)
460 2pcj_A ABC transporter, lipopr 92.7 0.053 1.8E-06 50.6 2.9 24 87-110 31-54 (224)
461 3tif_A Uncharacterized ABC tra 92.7 0.052 1.8E-06 51.1 2.8 25 86-110 31-55 (235)
462 2gks_A Bifunctional SAT/APS ki 92.6 0.16 5.3E-06 54.4 6.7 28 85-112 371-398 (546)
463 3tqf_A HPR(Ser) kinase; transf 92.6 0.082 2.8E-06 46.2 3.6 23 87-109 17-39 (181)
464 3fdi_A Uncharacterized protein 92.5 0.084 2.9E-06 48.3 3.8 25 87-111 7-31 (201)
465 2ged_A SR-beta, signal recogni 92.5 0.13 4.4E-06 46.6 5.1 25 85-109 47-71 (193)
466 3gmt_A Adenylate kinase; ssgci 92.5 0.077 2.6E-06 49.3 3.5 24 87-110 9-32 (230)
467 2dyk_A GTP-binding protein; GT 92.4 0.084 2.9E-06 46.0 3.7 23 87-109 2-24 (161)
468 2orv_A Thymidine kinase; TP4A 92.4 0.14 4.8E-06 47.2 5.1 108 86-202 19-126 (234)
469 3fkq_A NTRC-like two-domain pr 92.4 0.12 4.1E-06 52.6 5.2 38 84-121 141-179 (373)
470 2wji_A Ferrous iron transport 92.4 0.081 2.8E-06 46.5 3.5 22 87-108 4-25 (165)
471 2cbz_A Multidrug resistance-as 92.3 0.061 2.1E-06 50.7 2.8 25 86-110 31-55 (237)
472 3kjh_A CO dehydrogenase/acetyl 92.3 0.085 2.9E-06 50.2 3.9 33 89-121 3-35 (254)
473 2ck3_A ATP synthase subunit al 92.3 0.14 4.9E-06 53.1 5.7 25 87-111 163-188 (510)
474 2f9l_A RAB11B, member RAS onco 92.3 0.071 2.4E-06 48.7 3.2 24 86-109 5-28 (199)
475 2v9p_A Replication protein E1; 92.3 0.075 2.6E-06 51.9 3.4 26 85-110 125-150 (305)
476 3iqw_A Tail-anchored protein t 92.3 0.15 5.1E-06 50.7 5.6 37 85-121 15-51 (334)
477 4tmk_A Protein (thymidylate ki 92.2 0.22 7.5E-06 45.9 6.3 27 87-113 4-30 (213)
478 3gfo_A Cobalt import ATP-bindi 92.2 0.064 2.2E-06 51.7 2.8 23 87-109 35-57 (275)
479 3v9p_A DTMP kinase, thymidylat 92.2 0.15 5.1E-06 47.4 5.1 28 86-113 25-52 (227)
480 2zej_A Dardarin, leucine-rich 92.1 0.062 2.1E-06 48.3 2.5 21 88-108 4-24 (184)
481 2d2e_A SUFC protein; ABC-ATPas 92.1 0.079 2.7E-06 50.4 3.3 23 87-109 30-52 (250)
482 2qm8_A GTPase/ATPase; G protei 92.1 0.19 6.5E-06 50.1 6.2 29 84-112 53-81 (337)
483 3bfv_A CAPA1, CAPB2, membrane 92.1 0.23 7.9E-06 47.8 6.6 39 83-121 79-118 (271)
484 1b0u_A Histidine permease; ABC 92.1 0.067 2.3E-06 51.3 2.8 25 86-110 32-56 (262)
485 3cr8_A Sulfate adenylyltranfer 92.1 0.12 4E-06 55.2 4.8 28 85-112 368-395 (552)
486 1fx0_A ATP synthase alpha chai 92.1 0.064 2.2E-06 55.6 2.6 24 87-110 164-188 (507)
487 2ce2_X GTPase HRAS; signaling 92.0 0.088 3E-06 46.0 3.4 22 88-109 5-26 (166)
488 3cwq_A Para family chromosome 92.0 0.15 5.2E-06 46.9 5.0 33 88-121 2-35 (209)
489 3lv8_A DTMP kinase, thymidylat 92.0 0.15 5.2E-06 47.7 5.1 28 86-113 27-54 (236)
490 2zu0_C Probable ATP-dependent 92.0 0.082 2.8E-06 50.8 3.3 24 86-109 46-69 (267)
491 3zq6_A Putative arsenical pump 92.0 0.18 6.2E-06 50.0 5.9 36 86-121 14-49 (324)
492 1z2a_A RAS-related protein RAB 92.0 0.11 3.8E-06 45.5 4.0 24 86-109 5-28 (168)
493 1ji0_A ABC transporter; ATP bi 92.0 0.072 2.5E-06 50.3 2.8 24 87-110 33-56 (240)
494 3ld9_A DTMP kinase, thymidylat 91.9 0.13 4.3E-06 47.8 4.3 28 85-112 20-47 (223)
495 1sgw_A Putative ABC transporte 91.9 0.061 2.1E-06 49.7 2.2 24 87-110 36-59 (214)
496 4g1u_C Hemin import ATP-bindin 91.9 0.071 2.4E-06 51.2 2.7 34 86-120 37-70 (266)
497 1fzq_A ADP-ribosylation factor 91.9 0.15 5E-06 45.7 4.7 26 84-109 14-39 (181)
498 1bif_A 6-phosphofructo-2-kinas 91.9 0.14 4.8E-06 53.8 5.2 30 85-114 38-67 (469)
499 4dkx_A RAS-related protein RAB 91.9 0.3 1E-05 45.2 6.8 22 88-109 15-36 (216)
500 2pze_A Cystic fibrosis transme 91.9 0.075 2.6E-06 49.8 2.8 25 86-110 34-58 (229)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.3e-41 Score=365.07 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=228.4
Q ss_pred ccchhhHHHHHHhhcCC-CCCeeEEEEEecCCCCHHHHHHHHHH----HhhccccceEEeeeccchhcCC-CChHHHHHH
Q 048627 66 VGVESTVEEIESLLGVE-SKDVWALGIWGIGGIGKTTIARAIFD----KISGDFEGTCFLENVRVESQRP-GGLAWLRQK 139 (689)
Q Consensus 66 vGr~~~~~~l~~~l~~~-~~~~~~v~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~ 139 (689)
|||+.++++|.++|... ..+.++|+|+||||+||||||+++|+ +++.+|+.++|++ ++... .+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 59999999999999643 34689999999999999999999997 5888999999996 33321 367889999
Q ss_pred HHHHhcCCCC----C--Cc-----chHHHHHhhcCC-cEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhhhh
Q 048627 140 LLLNLLKDEN----V--IP-----DIDLNFRRLSRI-KILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN 207 (689)
Q Consensus 140 ~l~~~~~~~~----~--~~-----~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~~~ 207 (689)
++.++..... . .. ....+++.++++ |+||||||||+..++ .+.. .+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9998876421 1 12 267888999996 999999999998865 3321 279999999999999887
Q ss_pred cC-cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCHHHHHHHHHH-HHhc
Q 048627 208 WE-VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREKEVWESAINK-LQRI 285 (689)
Q Consensus 208 ~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~-l~~~ 285 (689)
++ ....|++++|+.++|++||.+++++... .+...+++++|+++|+|+|||++.+|+.++.+. .+|...+.. +...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc
Confidence 75 4468999999999999999999876543 356778999999999999999999999998774 233333322 2222
Q ss_pred CCchHHHHHHHHhcCCCHHHHHHhh-----------hcccccCCcCHHHHHHHHHhc--CCCch-----------hchhH
Q 048627 286 LHPSIREVLKISYDGLDDKEKNIFL-----------DVACFFRGEGVNLVMKFFDAS--GFYPE-----------IGINV 341 (689)
Q Consensus 286 ~~~~~~~~l~~s~~~L~~~~~~~~~-----------~la~f~~~~~~~~l~~l~~~~--~~~~~-----------~~l~~ 341 (689)
...++..++.+||+.||++.+.||. |||+||+++.+. +.+|.++ |+... .++++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 3445566666677776666666666 999999998877 7788888 55432 35999
Q ss_pred HhhcCceEEcc---CCeEEecHHHHHHHHHHHhhhc
Q 048627 342 LVDKSLIAIDS---YNKITMHDLLQELGREIVRQES 374 (689)
Q Consensus 342 L~~~~li~~~~---~~~~~~H~lv~~~a~~~~~~~~ 374 (689)
|++++|++... ..+|.|||++|++|+.++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999998754 3479999999999998776654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-35 Score=360.74 Aligned_cols=304 Identities=21% Similarity=0.276 Sum_probs=241.1
Q ss_pred cccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH---hhccccceEEeeeccchhcCCCCh
Q 048627 57 QLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK---ISGDFEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 57 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 133 (689)
.+|..+..||||++++++|.++|...++++++|+|+||||+||||||++++++ ...+|...+||..+..... ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHH
Confidence 35667778999999999999999766677899999999999999999999987 4566777665554433211 223
Q ss_pred HHHHHHHHHHhcCCCCC----C----cchHHHHHhhcCC--cEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 134 AWLRQKLLLNLLKDENV----I----PDIDLNFRRLSRI--KILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~----~----~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
......+...+...... . .....++..+.++ |+||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 34455566655543211 1 3345566666666 999999999998877654 68999999999998
Q ss_pred hhhh-cCcceEEEcCC-CCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCHHHHHHHHHH
Q 048627 204 VLRN-WEVRKIYEVEA-LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREKEVWESAINK 281 (689)
Q Consensus 204 ~~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~ 281 (689)
++.. .+....+++++ |+++++++||...++... ....+.+++|+++|+|+||||+.+|++|+.+. ..|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 45667899996 999999999999884332 33455799999999999999999999998765 579988888
Q ss_pred HHhcC-----------CchHHHHHHHHhcCCCHHHHHHhhhcccccCCc--CHHHHHHHHHhcCCCchhchhHHhhcCce
Q 048627 282 LQRIL-----------HPSIREVLKISYDGLDDKEKNIFLDVACFFRGE--GVNLVMKFFDASGFYPEIGINVLVDKSLI 348 (689)
Q Consensus 282 l~~~~-----------~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~~li 348 (689)
+.... ...+..++.+||+.|++++|.||.+||+||.++ +.+.++.+|++++...+..+++|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 86543 135899999999999999999999999999985 55679999988877788899999999999
Q ss_pred EEccCC---eEEecHHHHHHHHHHHhhh
Q 048627 349 AIDSYN---KITMHDLLQELGREIVRQE 373 (689)
Q Consensus 349 ~~~~~~---~~~~H~lv~~~a~~~~~~~ 373 (689)
+...++ +|+||+++|+++++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987655 4999999999999886554
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.8e-35 Score=325.39 Aligned_cols=275 Identities=16% Similarity=0.117 Sum_probs=209.9
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHH--hhccccc-eEEeeeccchhcCCCChHHHHHH
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDK--ISGDFEG-TCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
...|||++++++|.++|... ++.++|+|+||||+||||||++++++ ++.+|+. ++|++ ++. . .+...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~---~-~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN---C-NSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC---S-SSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC---C-CCHHHHHHH
Confidence 34599999999999999632 34789999999999999999999975 7888998 55555 433 3 445555555
Q ss_pred HHHHhcC---C---CCC---C------cchHHHHHhh---cCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccc
Q 048627 140 LLLNLLK---D---ENV---I------PDIDLNFRRL---SRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 140 ~l~~~~~---~---~~~---~------~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~ 201 (689)
+...+.. . ..+ . .....+++.+ .++|+||||||||+.++|+.+ .+||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccC
Confidence 5443211 1 000 0 1234555554 689999999999999888875 278999999999
Q ss_pred hhhhhhcCcceEEEcC------CCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCC--CHH
Q 048627 202 KQVLRNWEVRKIYEVE------ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKR--EKE 273 (689)
Q Consensus 202 ~~~~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~ 273 (689)
+.++..+.....+.++ +|+.+||++||.... +.. ..++..++ |+|+|||++++|+.|+++ +..
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 9887544333345565 899999999999984 322 12233333 999999999999999876 677
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhcCCCHHH-HHHhhhcccccCCcC--HHHHHHHHHhcCC-CchhchhHHhhcCceE
Q 048627 274 VWESAINKLQRILHPSIREVLKISYDGLDDKE-KNIFLDVACFFRGEG--VNLVMKFFDASGF-YPEIGINVLVDKSLIA 349 (689)
Q Consensus 274 ~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~-~~~~~~la~f~~~~~--~~~l~~l~~~~~~-~~~~~l~~L~~~~li~ 349 (689)
+|... ....+..++..||+.|++++ |.||+++|+||.++. .+.++.+|++++. .+...+++|+++||++
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 88753 35689999999999999999 999999999998755 4668899988753 3567899999999999
Q ss_pred Ecc-CCeEEecHHHHHHH
Q 048627 350 IDS-YNKITMHDLLQELG 366 (689)
Q Consensus 350 ~~~-~~~~~~H~lv~~~a 366 (689)
..+ .++|+|||++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 863 57899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=316.50 Aligned_cols=298 Identities=22% Similarity=0.285 Sum_probs=225.2
Q ss_pred cccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh---hcccc-ceEEeeeccchhcCCCC
Q 048627 57 QLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI---SGDFE-GTCFLENVRVESQRPGG 132 (689)
Q Consensus 57 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 132 (689)
..|..+..||||+.++++|.+++....++.++|+|+||||+||||||.+++++. ..+|+ .++|++ +..... ..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~--~~ 194 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK--SG 194 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH--HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch--HH
Confidence 356677889999999999999997555678999999999999999999999764 67896 455555 333211 11
Q ss_pred hHHHHHHHHHHhcCCC----CCC----cchHHHHHhhcC--CcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 133 LAWLRQKLLLNLLKDE----NVI----PDIDLNFRRLSR--IKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~----~~~----~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
+..-...+...+.... ... .....+...+.+ +++||||||+|+..+++.+ ++|++||||||+.
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 1122222333333211 111 334556666665 7899999999997766543 6789999999999
Q ss_pred hhhhhcCcceEEEc---CCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcCCCHHHHHHHH
Q 048627 203 QVLRNWEVRKIYEV---EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYKREKEVWESAI 279 (689)
Q Consensus 203 ~~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l 279 (689)
.++..+. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+|+|++.+|+.++... ..|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 8776543 234444 5899999999999988542 122345689999999999999999999998653 4688888
Q ss_pred HHHHhcC-----------CchHHHHHHHHhcCCCHHHHHHhhhcccccCC--cCHHHHHHHHHhcCCCchhchhHHhhcC
Q 048627 280 NKLQRIL-----------HPSIREVLKISYDGLDDKEKNIFLDVACFFRG--EGVNLVMKFFDASGFYPEIGINVLVDKS 346 (689)
Q Consensus 280 ~~l~~~~-----------~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~--~~~~~l~~l~~~~~~~~~~~l~~L~~~~ 346 (689)
+.+.... ...+..++..||+.|+++.|.||.++|+||.+ ++.+.+..+|+.+.......++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 8876542 24789999999999999999999999999987 4556788889776556677899999999
Q ss_pred ceEEccC---CeEEecHHHHHHHHHH
Q 048627 347 LIAIDSY---NKITMHDLLQELGREI 369 (689)
Q Consensus 347 li~~~~~---~~~~~H~lv~~~a~~~ 369 (689)
|+....+ .+|+||+++|+++++.
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9986542 3799999999999887
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.5e-25 Score=253.94 Aligned_cols=263 Identities=18% Similarity=0.247 Sum_probs=215.4
Q ss_pred cChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCC-CCCCCC-CcCCceeeecCCCCcc-ccC
Q 048627 417 LNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLK-SLPSNL-SAEKLVFLEVPDNNIE-QLG 493 (689)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~-~lp~~~-~~~~L~~L~l~~~~i~-~l~ 493 (689)
..+..+..+++|+.|++++|.+.+..|..++.++ +|+.|.+.+|.+. .+|..+ .+++|++|++++|.+. .+|
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-----CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 4567788888899999998888888888888776 7888888888877 667666 7788999999998887 567
Q ss_pred cccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcC
Q 048627 494 DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG 573 (689)
Q Consensus 494 ~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~ 573 (689)
..+..+++|++|+++++... ..+ +..++++++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|.....
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~-~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLT-GEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCC-SCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred HHHhcCCCCCEEEccCCccC-CcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 77888888999988887522 333 457788888999999998888888888888999999999988877777754321
Q ss_pred C--Cc---------E-------------------------------------EEccccccc-ccCcccccCCCCCEEecC
Q 048627 574 N--IS---------W-------------------------------------LLLRGSAIE-ELPSSIERQLRLSWLDLT 604 (689)
Q Consensus 574 ~--L~---------~-------------------------------------L~l~~~~l~-~l~~~i~~l~~L~~L~l~ 604 (689)
. +. . +++..+.+. .+|..++.+++|++|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 0 00 0 111112222 346667788999999999
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~ 683 (689)
+|.+.+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|+++ .+|..+.++++|+.|++++|++.|.|
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CCCC
Q 048627 684 PKRP 687 (689)
Q Consensus 684 p~~~ 687 (689)
|...
T Consensus 721 P~~~ 724 (768)
T 3rgz_A 721 PEMG 724 (768)
T ss_dssp CSSS
T ss_pred CCch
Confidence 9754
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.4e-24 Score=216.59 Aligned_cols=225 Identities=24% Similarity=0.284 Sum_probs=165.8
Q ss_pred CCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccch
Q 048627 425 MCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
..+++.|++++|.+. .+|..+..++ +|++|++.++.+..+|..+ .+.+|++|++++|.+..+|..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-----~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLS-----HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGT-----TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCch-hcChhhhhCC-----CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 466778888887776 4566666654 6777777777777777766 66777777777777776666666666666
Q ss_pred hhccccCccccccCCCC-------CCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCc
Q 048627 504 RIIHAACNKLIAKTPNP-------TLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS 576 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~ 576 (689)
+|++++|+.+ ..+|.. ..+.++++|++|++++|.+ ..+|..++.+++|++|+++
T Consensus 154 ~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~----------------- 214 (328)
T 4fcg_A 154 ELSIRACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIR----------------- 214 (328)
T ss_dssp EEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEE-----------------
T ss_pred EEECCCCCCc-cccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEcc-----------------
Confidence 6666665544 333321 0112255555555555542 2455555555555555554
Q ss_pred EEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 577 WLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 577 ~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
+|.+..+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|++
T Consensus 215 -----~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 215 -----NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp -----SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred -----CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 455666777889999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c-cccchhhccCCCcEEecCCCCC
Q 048627 657 E-RIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 657 ~-~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
. .+|.++.++++|+.+.+..+..
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhccHHHhhccCceEEeCCHHHH
Confidence 6 8999999999999999886654
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.4e-24 Score=245.89 Aligned_cols=264 Identities=21% Similarity=0.257 Sum_probs=204.1
Q ss_pred hhhhhCCCCcceEEeccccCCCCCcccccccC-ccc---------------------ccceeEEEecCCCCC-CCCCCC-
Q 048627 419 PKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQ-DPA---------------------FAEVKYFHWHGYPLK-SLPSNL- 474 (689)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~---------------------~~~L~~l~~~~~~~~-~lp~~~- 474 (689)
...+.++++|+.|++++|.+.+.+|..+..++ +++ ...|++|.+.+|.+. .+|..+
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 34466666677777766666655555554443 111 235666666666655 556656
Q ss_pred CcCCceeeecCCCCcc-ccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCC
Q 048627 475 SAEKLVFLEVPDNNIE-QLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFL 553 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 553 (689)
.+++|++|++++|.+. .+|..+..+++|+.|++.++... ..+ +..+.++++|++|++++|.+.+.+|..++.+++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcC--CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 6777888888888776 55667777888888888776522 333 3467788888888888888877888888888899
Q ss_pred CEEeccCCCCCCCCCCCC--cCCCcEEEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcc---------------
Q 048627 554 TKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSS--------------- 615 (689)
Q Consensus 554 ~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~--------------- 615 (689)
++|++++|...+.+|... ..+|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+|..
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 999999888777777643 367899999999887 78888999999999999998877666643
Q ss_pred -------------------------------------------------------cCCCCCccEEEeecCCCCCccCccc
Q 048627 616 -------------------------------------------------------LCKLKSLGVLDLHGCSNLRRLPECL 640 (689)
Q Consensus 616 -------------------------------------------------------~~~l~~L~~L~l~~~~~~~~~p~~l 640 (689)
++.+++|+.|++++|...+.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 3345788999999999999999999
Q ss_pred CCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 641 GQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 641 ~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+.+++|+.|++++|.++ .+|..++++++|+.|++++|++.+.+|.
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 99999999999999998 8999999999999999999999999984
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1e-23 Score=215.15 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=158.0
Q ss_pred cceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEe
Q 048627 455 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLN 533 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 533 (689)
.+++.|++.++.+..+|..+ .+.+|++|++++|.+..+|. .++++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~---------------------------~~~~l~~L~~L~ 133 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD---------------------------TMQQFAGLETLT 133 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS---------------------------CGGGGTTCSEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH---------------------------HHhccCCCCEEE
Confidence 35566666666666666555 45566666666555554444 345556666666
Q ss_pred ccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC-----------cCCCcEEEcccccccccCcccccCCCCCEEe
Q 048627 534 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS-----------SGNISWLLLRGSAIEELPSSIERQLRLSWLD 602 (689)
Q Consensus 534 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~-----------~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~ 602 (689)
|++|.+. .+|..++.+++|++|++++|...+.+|... ..+|+.|++++|.++.+|..++.+++|++|+
T Consensus 134 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212 (328)
T ss_dssp EESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred CCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence 6666533 566666666666666666666666666543 4678888888888999999999999999999
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCC
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|++. .+|..+.++++|+.|++++|++++
T Consensus 213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 9999985 68888999999999999999999999999999999999999998766 899999999999999999999999
Q ss_pred CCCC
Q 048627 682 SIPK 685 (689)
Q Consensus 682 ~~p~ 685 (689)
.+|.
T Consensus 292 ~iP~ 295 (328)
T 4fcg_A 292 RLPS 295 (328)
T ss_dssp CCCG
T ss_pred hccH
Confidence 9995
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.7e-24 Score=219.52 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=194.6
Q ss_pred CCcceEEeccccCCC--CCcccccccCcccccceeEEEecC-CCCC-CCCCCC-CcCCceeeecCCCCcc-ccCcccccC
Q 048627 426 CKLRFLKFYSSSFNG--ENKCKVSYLQDPAFAEVKYFHWHG-YPLK-SLPSNL-SAEKLVFLEVPDNNIE-QLGDCVKHY 499 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~--~~~~~~~~l~~l~~~~L~~l~~~~-~~~~-~lp~~~-~~~~L~~L~l~~~~i~-~l~~~~~~l 499 (689)
.+++.|+++++.+.+ .+|..+..++ +|++|++.+ +.+. .+|..+ .+++|++|++++|.+. .+|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-----~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-----YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-----TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-----CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 456777777777766 6666666665 666666663 4443 566666 6677888888888776 667777778
Q ss_pred ccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCC-CCCEEeccCCCCCCCCCCCCc-CCCcE
Q 048627 500 SKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLE-FLTKLDLSGCSKLKRLPEISS-GNISW 577 (689)
Q Consensus 500 ~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~l~~~p~~~~-~~L~~ 577 (689)
++|++|+++++..- ..+ +..+.++++|++|++++|.+.+.+|..++.++ +|++|++++|.....+|.... .+|+.
T Consensus 125 ~~L~~L~Ls~N~l~-~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALS-GTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201 (313)
T ss_dssp TTCCEEECCSSEEE-SCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred CCCCEEeCCCCccC-CcC--ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccE
Confidence 88888888776421 223 34677888899999998887778888888887 899999998876655554321 34889
Q ss_pred EEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 578 LLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 578 L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
|++++|.+. ..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|...+.+|..++.+++|+.|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 999999887 4667789999999999999998666665 78899999999999999889999999999999999999999
Q ss_pred c-cccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 657 E-RIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 657 ~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+ .+|.. .++++|+.|++.+|+.+-..|-
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred cccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 8 77765 8899999999999997665553
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.8e-23 Score=223.15 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=90.6
Q ss_pred CCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 573 GNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
.+|+.|++++|.+..+ |..+..+++|++|++++|.+.+..|..++.+++|++|++++|...+..|..++.+++|+.|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 5677888888777765 446777888888888888876666777888888888888888777777778888888888888
Q ss_pred cCCCCccccch-hhccCCCcEEecCCCCCCCCCCCCC
Q 048627 652 AETNIERIPKS-IIQLFMLRYLLLNCSEGHESIPKRP 687 (689)
Q Consensus 652 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~ 687 (689)
++|.++.+|.. +..+++|+.|++++|++.+..|.+.
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 88888877754 4778888888888888888888653
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.7e-23 Score=231.71 Aligned_cols=266 Identities=17% Similarity=0.204 Sum_probs=211.2
Q ss_pred cceeeEEeccCcccccccCh-hhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcC
Q 048627 400 EKIEGICLDMSKAKDIHLNP-KTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAE 477 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~ 477 (689)
..++.+.+..+... .++. ..+..+++|+.|++++|.+.|.+| .++.++ +|+.|.+.+|.+..+|..+ .+.
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~ 376 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-----KLASLNLAYNQITEIPANFCGFT 376 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-----EESEEECCSSEEEECCTTSEEEC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-----CCCEEECCCCccccccHhhhhhc
Confidence 45566666655443 2322 278889999999999998887777 677665 8888888888888888888 777
Q ss_pred C-ceeeecCCCCccccCcccccCc--cchhhccccCccccccCCCCCCCC-------CCCcccEEeccCCCCCcccCccC
Q 048627 478 K-LVFLEVPDNNIEQLGDCVKHYS--KLNRIIHAACNKLIAKTPNPTLMP-------RLNKLVFLNLRGSKSLKSLPSEI 547 (689)
Q Consensus 478 ~-L~~L~l~~~~i~~l~~~~~~l~--~L~~l~l~~~~~l~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~p~~l 547 (689)
+ |++|++++|.+..+|..+..+. +|++|+++++... ...| ..+. .+++|++|++++|.+. .+|..+
T Consensus 377 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p--~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 452 (636)
T 4eco_A 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDG--KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL 452 (636)
T ss_dssp TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTT--CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH
T ss_pred ccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-Ccch--hhhcccccccccCCCCCEEECcCCccC-cCCHHH
Confidence 7 9999999999988888776654 8999998887532 3332 3444 6778999999988854 677654
Q ss_pred C-CCCCCCEEeccCCCCCCCCCCCCcC----------CCcEEEcccccccccCcccc--cCCCCCEEecCCCCCCCCCCc
Q 048627 548 F-NLEFLTKLDLSGCSKLKRLPEISSG----------NISWLLLRGSAIEELPSSIE--RQLRLSWLDLTDCKMFKSLPS 614 (689)
Q Consensus 548 ~-~l~~L~~L~l~~~~~l~~~p~~~~~----------~L~~L~l~~~~l~~l~~~i~--~l~~L~~L~l~~~~~~~~lp~ 614 (689)
. .+++|++|++++|... .+|..... +|+.|++++|.+..+|..+. .+++|+.|++++|.+.+ +|.
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 3 5889999999998755 77765543 88999999999999998887 89999999999999866 898
Q ss_pred ccCCCCCccEEEee------cCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 615 SLCKLKSLGVLDLH------GCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 615 ~~~~l~~L~~L~l~------~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
.++++++|++|+++ +|...+.+|..++.+++|+.|++++|.+..+|..+. ++|+.|++++|++..
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcc
Confidence 89999999999994 466678889899999999999999999998988765 789999999997753
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-22 Score=225.11 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=197.9
Q ss_pred ccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCccccC
Q 048627 416 HLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQLG 493 (689)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l~ 493 (689)
.+++..|..+++|++|++++|.+.+..|..+..++ +|++|++.+|.+..+|+.. .+++|++|++++|.+..+|
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-----CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 45667788889999999998888776666677775 8888888888888887754 7888999999999888887
Q ss_pred cc-cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCC---------
Q 048627 494 DC-VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK--------- 563 (689)
Q Consensus 494 ~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--------- 563 (689)
.. +..+++|++|+++++. + ..++ +..+.++++|++|++++|.+.+ ++ ++.+++|++|++++|..
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~-l-~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNN-L-ERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-C-CBCC-TTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred HHHhccCCCCCEEEeeCCc-C-CCCC-hhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccccccCCchh
Confidence 76 4788889999888864 3 2222 3467888889999998887543 22 33455555555544432
Q ss_pred ---------CCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCC
Q 048627 564 ---------LKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 564 ---------l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 634 (689)
+..+|.....+|+.|++++|.+... ..+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|...+
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 2333444446788888888888774 568899999999999999988889999999999999999976654
Q ss_pred ccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 635 RLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 635 ~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+|..++.+++|+.|++++|.++.+|.++..+++|+.|++++|.+.+
T Consensus 293 -l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 293 -LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp -EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred -CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 6777788999999999999999999999999999999999999864
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=212.47 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=193.1
Q ss_pred cChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCCceeeecCCCCccccCc
Q 048627 417 LNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLEVPDNNIEQLGD 494 (689)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~L~~L~l~~~~i~~l~~ 494 (689)
+++..|..+++|++|++++|.+.+..+..+..++ +|++|++.++.+..+|+. + .+++|++|++++|.+..+|.
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCC-----CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 4566688888899999988887766555666665 788888888888888765 3 77888899998888888877
Q ss_pred c-cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCC----------
Q 048627 495 C-VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK---------- 563 (689)
Q Consensus 495 ~-~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---------- 563 (689)
. +..+++|++|+++++. + ..++ +..+.++++|++|++++|.+.. ++ ++.+++|++|++++|..
T Consensus 135 ~~~~~l~~L~~L~L~~n~-l-~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNN-L-ERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-C-CBCC-TTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred HHhcCCCCCcEEECCCCc-c-CccC-hhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccccccCCCCcce
Confidence 6 4788888888888764 2 2222 3457788888888888887543 22 33445555554444321
Q ss_pred --------CCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCc
Q 048627 564 --------LKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR 635 (689)
Q Consensus 564 --------l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 635 (689)
+..+|.....+|+.|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|++|++++|... .
T Consensus 209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 286 (390)
T 3o6n_A 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 286 (390)
T ss_dssp EEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-E
T ss_pred EEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-c
Confidence 2333444446788888888888876 46888999999999999987777889999999999999997654 4
Q ss_pred cCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 636 LPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 636 ~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++..
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce
Confidence 6767778899999999999999999889999999999999998754
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=6.9e-23 Score=232.15 Aligned_cols=274 Identities=17% Similarity=0.149 Sum_probs=158.3
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEecccc-CCC-CCcccccccC--cccccceeEEEecCCCCCCCCC--CC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSS-FNG-ENKCKVSYLQ--DPAFAEVKYFHWHGYPLKSLPS--NL 474 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~--~l~~~~L~~l~~~~~~~~~lp~--~~ 474 (689)
.++.+.+..+.. ....|..|.++++|+.|++++|. +.+ .+|..++.++ ....++|+.|++.+|.+..+|. .+
T Consensus 492 ~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 492 DLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 344444443321 23345667777777777777776 666 5565554432 1122367778888888778877 55
Q ss_pred -CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCc-ccEEeccCCCCCcccCccCCCCCC
Q 048627 475 -SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNK-LVFLNLRGSKSLKSLPSEIFNLEF 552 (689)
Q Consensus 475 -~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~p~~l~~l~~ 552 (689)
.+++|++|++++|.+..+| .+..+++|+.|+++++. + ..+ +..+.++++ |+.|+|++|.+. .+|..+..+..
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l-~~l--p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-I-EEI--PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-C-SCC--CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-c-ccc--hHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 6778888888888777777 77777788888877754 3 233 345677777 788888777743 66766555443
Q ss_pred --CCEEeccCCCCCCCCCCCC-------cCCCcEEEcccccccccCcccc-cCCC-------------------------
Q 048627 553 --LTKLDLSGCSKLKRLPEIS-------SGNISWLLLRGSAIEELPSSIE-RQLR------------------------- 597 (689)
Q Consensus 553 --L~~L~l~~~~~l~~~p~~~-------~~~L~~L~l~~~~l~~l~~~i~-~l~~------------------------- 597 (689)
|++|++++|.....+|... ..+|+.|++++|.+..+|..+. .+++
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 7777777666544333221 1244555555555554444332 3444
Q ss_pred ------CCEEecCCCCCCCCCCcccC--CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccC------CCCc-cccch
Q 048627 598 ------LSWLDLTDCKMFKSLPSSLC--KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAE------TNIE-RIPKS 662 (689)
Q Consensus 598 ------L~~L~l~~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~------~~l~-~lp~~ 662 (689)
|+.|++++|.+. .+|..+. .+++|+.|+|++|...+ +|..++.+++|+.|++++ |.+. .+|.+
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 555555555442 4455444 55555555555554443 455555555555555544 3333 45555
Q ss_pred hhccCCCcEEecCCCCCCCCCCC
Q 048627 663 IIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 663 ~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+.++++|+.|++++|++ +.+|.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCS
T ss_pred HhcCCCCCEEECCCCCC-CccCH
Confidence 55555566666666555 55554
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2e-22 Score=228.30 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=213.3
Q ss_pred ceeeEEeccCcccccccCh-hhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNP-KTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~ 478 (689)
.++.+.+..+... .++. ..|.++++|+.|++++|.+. .+| .++.++ +|+.|.+.+|.+..+|..+ .+.+
T Consensus 549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-----~L~~L~Ls~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-----KLTDLKLDYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-----EESEEECCSSCCSCCCTTSCEECT
T ss_pred CccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-----cceEEECcCCccccchHHHhhccc
Confidence 4566666555443 2332 27888888888888888877 666 566665 7888888888888888877 6777
Q ss_pred -ceeeecCCCCccccCcccccCcc--chhhccccCccccccCCCC-CCCC--CCCcccEEeccCCCCCcccCccCC-CCC
Q 048627 479 -LVFLEVPDNNIEQLGDCVKHYSK--LNRIIHAACNKLIAKTPNP-TLMP--RLNKLVFLNLRGSKSLKSLPSEIF-NLE 551 (689)
Q Consensus 479 -L~~L~l~~~~i~~l~~~~~~l~~--L~~l~l~~~~~l~~~~~~~-~~~~--~l~~L~~L~l~~~~~~~~~p~~l~-~l~ 551 (689)
|++|++++|.+..+|..+..+.. |+.|+++++... ..+|.. ..+. .+++|+.|+|++|.+. .+|..+. .++
T Consensus 620 ~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~-g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~ 697 (876)
T 4ecn_A 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS 697 (876)
T ss_dssp TCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT-TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC
T ss_pred cCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC-CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC
Confidence 99999999988888877766654 888888887533 333321 1222 3458999999998854 7777654 789
Q ss_pred CCCEEeccCCCCCCCCCCCCcC----------CCcEEEcccccccccCcccc--cCCCCCEEecCCCCCCCCCCcccCCC
Q 048627 552 FLTKLDLSGCSKLKRLPEISSG----------NISWLLLRGSAIEELPSSIE--RQLRLSWLDLTDCKMFKSLPSSLCKL 619 (689)
Q Consensus 552 ~L~~L~l~~~~~l~~~p~~~~~----------~L~~L~l~~~~l~~l~~~i~--~l~~L~~L~l~~~~~~~~lp~~~~~l 619 (689)
+|++|++++|.. ..+|..... +|+.|++++|.+..+|..+. .+++|+.|++++|.+.+ +|..++++
T Consensus 698 ~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 698 PISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp CCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 999999999874 477765432 89999999999999999987 99999999999999865 89999999
Q ss_pred CCccEEEeec------CCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 620 KSLGVLDLHG------CSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 620 ~~L~~L~l~~------~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
++|+.|+|++ |...+.+|..++.+++|+.|++++|.+..+|..+. ++|+.|+|++|++..
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 9999999976 66788999999999999999999999999998865 699999999999864
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4.7e-23 Score=229.75 Aligned_cols=274 Identities=17% Similarity=0.154 Sum_probs=158.6
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEecccc-CCC-CCcccccccC-cccccceeEEEecCCCCCCCCC--CC-
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSS-FNG-ENKCKVSYLQ-DPAFAEVKYFHWHGYPLKSLPS--NL- 474 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-~l~~~~L~~l~~~~~~~~~lp~--~~- 474 (689)
.++.+.+..+.. ....|..|.++++|+.|++++|. +.+ .+|..++.+. .....+|+.|.+.+|.+..+|. .+
T Consensus 250 ~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 250 DLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp TCCEEEEECCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred CCCEEEecCCcC--CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 344454443322 22345667777777777777776 666 5665555540 0011266666666666666666 44
Q ss_pred CcCCceeeecCCCCcc-ccCcccccCccchhhccccCccccccCCCCCCCCCCCc-ccEEeccCCC--------------
Q 048627 475 SAEKLVFLEVPDNNIE-QLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNK-LVFLNLRGSK-------------- 538 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~~~-------------- 538 (689)
.+++|++|++++|.+. .+| .+..+++|++|+++++. + ..+| ..+.++++ |++|++++|.
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l-~~lp--~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-I-TEIP--ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-E-EECC--TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-c-cccc--HhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 5666666666666666 555 55556666666665543 2 2222 23445555 5555555554
Q ss_pred -----------CCcccCccCC-------CCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcccccccccCcccccC--
Q 048627 539 -----------SLKSLPSEIF-------NLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPSSIERQ-- 595 (689)
Q Consensus 539 -----------~~~~~p~~l~-------~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~i~~l-- 595 (689)
+.+..|..+. .+++|++|++++|... .+|... ..+|+.|++++|.+..+|..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 4444444333 3444555555554422 344321 245666666666666655543321
Q ss_pred ------CCCCEEecCCCCCCCCCCcccC--CCCCccEEEeecCCCCCccCcccCCCCCCCEEEcc------CCCCc-ccc
Q 048627 596 ------LRLSWLDLTDCKMFKSLPSSLC--KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLA------ETNIE-RIP 660 (689)
Q Consensus 596 ------~~L~~L~l~~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~------~~~l~-~lp 660 (689)
++|++|++++|.+. .+|..+. .+++|+.|++++|...+ +|..++.+++|+.|+++ +|.+. .+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 26777777777664 6666665 77777777777766665 67777777777777774 34444 677
Q ss_pred chhhccCCCcEEecCCCCCCCCCCC
Q 048627 661 KSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 661 ~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
.++.++++|+.|++++|.+ +.+|.
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHHhcCCCCCEEECCCCcC-CccCH
Confidence 7777777777777777777 66664
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=217.19 Aligned_cols=271 Identities=17% Similarity=0.156 Sum_probs=193.9
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~ 478 (689)
.++.+.+..... ..+.+..|..+++|+.|++++|.+.+..|..+..++ +|++|++.++.+..+|... .+++
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCCEEECCCCcCCccCcccccCCCC
Confidence 344454444332 234456677777888888877777666666666665 6777777777777777643 6677
Q ss_pred ceeeecCCCCcccc-CcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCC--------------------
Q 048627 479 LVFLEVPDNNIEQL-GDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGS-------------------- 537 (689)
Q Consensus 479 L~~L~l~~~~i~~l-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~-------------------- 537 (689)
|++|++++|.+..+ +..+..+++|++|+++++..- .++ +..+.++++|+.|++++|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--YIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--EEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccc--eeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 77777777777655 344666777777776664311 111 123444455555555544
Q ss_pred ----CCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCc--CCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCC
Q 048627 538 ----KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFK 610 (689)
Q Consensus 538 ----~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~--~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~ 610 (689)
.+.+..+..+..+++|++|++++|..+..+|.... .+|+.|++++|.++.+|. .+..+++|+.|++++|.+.+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 43333334566667777777777776666665433 378999999999998884 58889999999999999876
Q ss_pred CCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccch-hhccCCCcEEecCCCCCCC
Q 048627 611 SLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKS-IIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 611 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~ 681 (689)
..+..+..+++|+.|+|++|...+..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 6677789999999999999988888888999999999999999999988864 5788999999999998754
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.5e-22 Score=214.54 Aligned_cols=276 Identities=18% Similarity=0.182 Sum_probs=214.8
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCC-cccccccCcccccceeEEEecCCCCCCC-CCCC-Cc
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGEN-KCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SA 476 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~ 476 (689)
..++.+.+..... ..+.+..|.++++|++|++++|.+.+.+ +..+..++ +|++|++.++.+..+ |..+ .+
T Consensus 30 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-----SLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT-----TCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccc-----cCCEEeCCCCccCccChhhccCc
Confidence 4566676665544 2345778999999999999999887654 34466665 899999999998877 5566 78
Q ss_pred CCceeeecCCCCccc-cCcc--cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCC---
Q 048627 477 EKLVFLEVPDNNIEQ-LGDC--VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNL--- 550 (689)
Q Consensus 477 ~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l--- 550 (689)
.+|++|++++|.+.. .+.. +..+++|++|+++++. + ........+.++++|++|++++|.+.+..|..+..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-I-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-C-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-c-CccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 999999999999975 3333 8889999999999875 2 222212237889999999999998766666555433
Q ss_pred -------------------------------CCCCEEeccCCCCCCCCCC------------------------------
Q 048627 551 -------------------------------EFLTKLDLSGCSKLKRLPE------------------------------ 569 (689)
Q Consensus 551 -------------------------------~~L~~L~l~~~~~l~~~p~------------------------------ 569 (689)
++|++|++++|......|.
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 5688888887754321110
Q ss_pred -----------CCcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccC
Q 048627 570 -----------ISSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLP 637 (689)
Q Consensus 570 -----------~~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 637 (689)
....+|+.|++++|.+..+ |..+..+++|++|++++|.+.+..|..++.+++|++|++++|...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 0114688999998888854 6678999999999999999987778899999999999999998877778
Q ss_pred cccCCCCCCCEEEccCCCCccc-cchhhccCCCcEEecCCCCCCCCCC
Q 048627 638 ECLGQLSSPILLNLAETNIERI-PKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 638 ~~l~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
..++.+++|+.|++++|.++.+ |..+.++++|+.|++++|++.+..|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 8899999999999999999965 6788999999999999999876443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=217.12 Aligned_cols=275 Identities=16% Similarity=0.185 Sum_probs=190.5
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCc
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKL 479 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L 479 (689)
..++.+.+..... ..+.+..|..+++|++|++++|.+.+..|..+..++ +|++|+++++.++.+|.. .+.+|
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~-~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELEYLDLSHNKLVKISCH-PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCCEEECCSSCCCEEECC-CCCCC
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhccc-----CCCEEecCCCceeecCcc-ccCCc
Confidence 4556666655443 345567888999999999999988877677777776 788888888888888887 78888
Q ss_pred eeeecCCCCccc--cCcccccCccchhhccccCccccc----------------------cCCCCCCCCC----------
Q 048627 480 VFLEVPDNNIEQ--LGDCVKHYSKLNRIIHAACNKLIA----------------------KTPNPTLMPR---------- 525 (689)
Q Consensus 480 ~~L~l~~~~i~~--l~~~~~~l~~L~~l~l~~~~~l~~----------------------~~~~~~~~~~---------- 525 (689)
++|++++|.+.. +|..+..+++|++|+++++.--.. ....+..+..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888888875 456788888888877776531100 0000111111
Q ss_pred ----------------C---------------------------------------------------------CcccEE
Q 048627 526 ----------------L---------------------------------------------------------NKLVFL 532 (689)
Q Consensus 526 ----------------l---------------------------------------------------------~~L~~L 532 (689)
+ ++|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 1 145556
Q ss_pred eccCCCCCcccCccC-----------------------------------------------------CCCCCCCEEecc
Q 048627 533 NLRGSKSLKSLPSEI-----------------------------------------------------FNLEFLTKLDLS 559 (689)
Q Consensus 533 ~l~~~~~~~~~p~~l-----------------------------------------------------~~l~~L~~L~l~ 559 (689)
++++|.+.+.+|..+ ..+++|++|+++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 665555444555544 455667777777
Q ss_pred CCCCCCCCCCCC--cCCCcEEEcccccccc---cCcccccCCCCCEEecCCCCCCCCCCcc-cCCCCCccEEEeecCCCC
Q 048627 560 GCSKLKRLPEIS--SGNISWLLLRGSAIEE---LPSSIERQLRLSWLDLTDCKMFKSLPSS-LCKLKSLGVLDLHGCSNL 633 (689)
Q Consensus 560 ~~~~l~~~p~~~--~~~L~~L~l~~~~l~~---l~~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 633 (689)
+|......|... ..+|+.|++++|.+.. +|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|...
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 766555445432 3567777887777763 4456777788888888888776656654 667778888888887777
Q ss_pred CccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 634 RRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 634 ~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+.+|..+. ++|+.|++++|.++.+|.++..+++|+.|++++|++. .+|.
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 76666543 6888888888888888888888999999999999877 4554
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=6e-23 Score=208.12 Aligned_cols=227 Identities=19% Similarity=0.258 Sum_probs=200.8
Q ss_pred cceeEEEecCCCCC---CCCCCC-CcCCceeeecCC-CCcc-ccCcccccCccchhhccccCccccccCCCCCCCCCCCc
Q 048627 455 AEVKYFHWHGYPLK---SLPSNL-SAEKLVFLEVPD-NNIE-QLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNK 528 (689)
Q Consensus 455 ~~L~~l~~~~~~~~---~lp~~~-~~~~L~~L~l~~-~~i~-~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~ 528 (689)
.+++.+++.++.+. .+|..+ .+++|++|++++ |.+. .+|..+..+++|++|+++++..- ..+| ..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p--~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIP--DFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECC--GGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCC--HHHhCCCC
Confidence 47899999999988 588888 889999999994 7776 67888999999999999987532 3443 47889999
Q ss_pred ccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCc--C-CCcEEEccccccc-ccCcccccCCCCCEEecC
Q 048627 529 LVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--G-NISWLLLRGSAIE-ELPSSIERQLRLSWLDLT 604 (689)
Q Consensus 529 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~--~-~L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~ 604 (689)
|++|++++|.+.+.+|..+..+++|++|++++|.....+|.... . +|+.|++++|.+. .+|..+..+. |++|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999998879999999999999999999987667776432 3 8999999999998 7888899887 9999999
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~ 683 (689)
+|.+.+..|..+..+++|++|++++|...+.+|. +..+++|+.|++++|.++ .+|.++.++++|+.|++++|++.+.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9999888999999999999999999988777665 788999999999999999 89999999999999999999999999
Q ss_pred CCC
Q 048627 684 PKR 686 (689)
Q Consensus 684 p~~ 686 (689)
|..
T Consensus 285 p~~ 287 (313)
T 1ogq_A 285 PQG 287 (313)
T ss_dssp CCS
T ss_pred CCC
Confidence 975
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.1e-21 Score=216.28 Aligned_cols=275 Identities=16% Similarity=0.162 Sum_probs=195.8
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCc
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKL 479 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L 479 (689)
..++.+.+..+.. ..+.+..|..+++|++|++++|.+.+..|..+..++ +|++|++++|.++.+|.. .+.+|
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~-~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-----DLEYLDVSHNRLQNISCC-PMASL 123 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-----TCCEEECTTSCCCEECSC-CCTTC
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-----CCCEEECCCCcCCccCcc-ccccC
Confidence 3556666655543 345567899999999999999998887777787776 889999999999999988 88999
Q ss_pred eeeecCCCCccccC--cccccCccchhhccccCccccccC----------------------CCCCCCCC----------
Q 048627 480 VFLEVPDNNIEQLG--DCVKHYSKLNRIIHAACNKLIAKT----------------------PNPTLMPR---------- 525 (689)
Q Consensus 480 ~~L~l~~~~i~~l~--~~~~~l~~L~~l~l~~~~~l~~~~----------------------~~~~~~~~---------- 525 (689)
++|++++|.+..++ ..+..+++|++|+++++.--...+ ..+..+.+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 99999999998764 678888888888887753110000 00001111
Q ss_pred ----------------CC-------------------------------------------------------cccEEec
Q 048627 526 ----------------LN-------------------------------------------------------KLVFLNL 534 (689)
Q Consensus 526 ----------------l~-------------------------------------------------------~L~~L~l 534 (689)
++ +|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 11 4455555
Q ss_pred cCCCCCcccCccC-----------------------------------------------------CCCCCCCEEeccCC
Q 048627 535 RGSKSLKSLPSEI-----------------------------------------------------FNLEFLTKLDLSGC 561 (689)
Q Consensus 535 ~~~~~~~~~p~~l-----------------------------------------------------~~l~~L~~L~l~~~ 561 (689)
++|.+.+.+|..+ ..+++|++|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 5555444555543 56677888888887
Q ss_pred CCCCCCCCCC--cCCCcEEEcccccccccC---cccccCCCCCEEecCCCCCCCCCCcc-cCCCCCccEEEeecCCCCCc
Q 048627 562 SKLKRLPEIS--SGNISWLLLRGSAIEELP---SSIERQLRLSWLDLTDCKMFKSLPSS-LCKLKSLGVLDLHGCSNLRR 635 (689)
Q Consensus 562 ~~l~~~p~~~--~~~L~~L~l~~~~l~~l~---~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~ 635 (689)
......|... ..+|+.|++++|.++.++ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|...+.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 7665555432 367888888888887544 45778888888888888886656653 66778888888888877766
Q ss_pred cCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 636 LPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 636 ~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+|..+. ++|+.|++++|.++.+|.++.++++|+.|++++|++. .+|.
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 665543 6788888888888888887778888888888888877 4554
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=8.4e-22 Score=219.71 Aligned_cols=270 Identities=19% Similarity=0.178 Sum_probs=163.9
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCC-CCC-CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLP-SNL-SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp-~~~-~~~~ 478 (689)
.++.+.+...... .+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++.+|.+..++ ..+ .+.+
T Consensus 34 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-----RLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCcc-----ccCeeeCCCCcccccChhhhccccc
Confidence 4555655554432 34567788888899999988888777777777776 7888888888887664 455 7788
Q ss_pred ceeeecCCCCcccc-CcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCC--E
Q 048627 479 LVFLEVPDNNIEQL-GDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLT--K 555 (689)
Q Consensus 479 L~~L~l~~~~i~~l-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~--~ 555 (689)
|++|++++|.++.+ +..+..+++|++|+++++.. ..++.+ .+..+++|++|++++|.+.+..|..++.+++|+ +
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l--~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI--SSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC--CCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcc--cccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 88888888888876 45678888888888887652 222222 233377777777777765544454555555555 5
Q ss_pred EeccCCCCCCC---------------------------------------------------------------------
Q 048627 556 LDLSGCSKLKR--------------------------------------------------------------------- 566 (689)
Q Consensus 556 L~l~~~~~l~~--------------------------------------------------------------------- 566 (689)
|++++|.....
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 55555432211
Q ss_pred -----CCCC---CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCc
Q 048627 567 -----LPEI---SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPE 638 (689)
Q Consensus 567 -----~p~~---~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 638 (689)
++.. ...+|+.|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.+|.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 1111 11355666666666666666666666666666666665444454555555555555555544444433
Q ss_pred -ccCCCCCCCEEEccCCCCccc---cchhhccCCCcEEecCCCCCC
Q 048627 639 -CLGQLSSPILLNLAETNIERI---PKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 639 -~l~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~l 680 (689)
.++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 244455555555555544422 333444444444444444443
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.9e-21 Score=199.18 Aligned_cols=243 Identities=14% Similarity=0.164 Sum_probs=155.4
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCC-CCCC-CcCCceeeecCCCCccccCcccccCccch
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
++++.|++++|.+.+..+..+..++ +|++|++.++.+..+ |..+ .+++|++|++++|.++.+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLK-----NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCT-----TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCC-----CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 4667777777766665444555554 667777777776666 4445 56777777777777776665543 5677
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCc--ccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
+|+++++. + ..++ ...+.++++|++|++++|.... ..+..+..+++|++|++++|. +..+|.....+|+.|+++
T Consensus 125 ~L~l~~n~-l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENE-I-TKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLD 200 (330)
T ss_dssp EEECCSSC-C-CBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECT
T ss_pred EEECCCCc-c-cccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECC
Confidence 77766653 2 1221 1235566777777777776532 445556677777777777765 445565555677777777
Q ss_pred ccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc
Q 048627 582 GSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 582 ~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
+|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|... .+|..+..+++|+.|++++|+++.+|
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence 7777655 456677777777777777765555556677777777777776543 66666777777777777777777655
Q ss_pred chh-h------ccCCCcEEecCCCCCC
Q 048627 661 KSI-I------QLFMLRYLLLNCSEGH 680 (689)
Q Consensus 661 ~~~-~------~l~~L~~L~l~~~~~l 680 (689)
... . ..+.|+.|++.+|++.
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred hhhcCCcccccccccccceEeecCccc
Confidence 332 1 2356777777777764
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.4e-21 Score=217.87 Aligned_cols=252 Identities=16% Similarity=0.117 Sum_probs=206.6
Q ss_pred hhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCcccc---Ccccc
Q 048627 421 TFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQL---GDCVK 497 (689)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l---~~~~~ 497 (689)
.+..+.+|+.|++++|.+ +.+| .+ .+ .+|+.+.+.++....-.....+++|++|++++|.++.. +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l-----~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DL-----PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-CC-CC-----SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-cccc-cC-CC-----CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 566677777777777776 5544 22 33 47777777777432222333778899999999988766 66788
Q ss_pred cCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCCC--cCC
Q 048627 498 HYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEIS--SGN 574 (689)
Q Consensus 498 ~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~ 574 (689)
.+++|++|+++++. + ..+| ..+..+++|++|++++|...+..| ..+..+++|++|++++|......|... ..+
T Consensus 374 ~~~~L~~L~L~~n~-l-~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-A-IIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CCSCCCEEECCSCS-E-EEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cCCcccEeECCCCc-c-ccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 89999999999875 3 3444 578889999999999999777666 578899999999999998766666532 378
Q ss_pred CcEEEcccccccc--cCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEcc
Q 048627 575 ISWLLLRGSAIEE--LPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLA 652 (689)
Q Consensus 575 L~~L~l~~~~l~~--l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 652 (689)
|+.|++++|.+.. +|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|...+..|..++.+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 9999999999985 78889999999999999999988888899999999999999999988889999999999999999
Q ss_pred CCCCccccchhhccC-CCcEEecCCCCCCCCCC
Q 048627 653 ETNIERIPKSIIQLF-MLRYLLLNCSEGHESIP 684 (689)
Q Consensus 653 ~~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~~p 684 (689)
+|+++.+|..+..++ +|+.|++++|++....|
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999997 59999999999886554
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.9e-21 Score=216.79 Aligned_cols=256 Identities=20% Similarity=0.176 Sum_probs=126.1
Q ss_pred cChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCCceeeecCCC-------
Q 048627 417 LNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDN------- 487 (689)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~------- 487 (689)
+.+..|..+++|+.|++++|.+. .+|..+..++ +|++|.+.++.+..+++ .+ .+++|++|++++|
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS-----TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-----TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccc-----cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 34445566666666666666554 3444444443 45555555555544422 22 3444445554444
Q ss_pred ------------------Ccccc---CcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCcc
Q 048627 488 ------------------NIEQL---GDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSE 546 (689)
Q Consensus 488 ------------------~i~~l---~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 546 (689)
.+... +..+..+++|++|+++++... ... +..+.++++|++|++++|...+..|..
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLK--TEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EEC--TTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCC--HHHhcCCccCCeEECCCCcCCCcccch
Confidence 44332 223444444444444443211 111 123444455555555554433333322
Q ss_pred -CCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccc--c--CcccccCCCCCEEecCCCCCCCCCCcccCCC
Q 048627 547 -IFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEE--L--PSSIERQLRLSWLDLTDCKMFKSLPSSLCKL 619 (689)
Q Consensus 547 -l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~--l--~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 619 (689)
+..+++|++|++++|......|... ..+|+.|++++|.+.. + +..+..+++|++|++++|.+.+..|..++.+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 4445555555555554333333221 2455555555555542 1 1335555566666666665555555555566
Q ss_pred CCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc-chhhccCCCcEEecCCCCCCCC
Q 048627 620 KSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP-KSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 620 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
++|++|++++|...+..|..+.++++| .|++++|.++.+| ..+..+++|+.|++++|++...
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 666666666655555555555556666 6666666655333 3345556666666666655443
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=5.3e-21 Score=197.47 Aligned_cols=245 Identities=16% Similarity=0.203 Sum_probs=155.0
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCcc
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
+..+++|++|++++|.+.+. +. +..++ +|++|++.+|.+..+|....+++|++|++++|.+..++. +..+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~-----~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP-LSNLV-----KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCT-----TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred hhhcCCccEEEccCCccccc-hh-hhcCC-----cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence 56666677777766665543 22 34433 666666666666666543366666666666666665544 556666
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCC---------------------cccCccCCCCCCCCEEeccC
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSL---------------------KSLPSEIFNLEFLTKLDLSG 560 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~p~~l~~l~~L~~L~l~~ 560 (689)
|++|+++++..+ .. +..+.++++|++|++++|... ..++. +..+++|++|++++
T Consensus 134 L~~L~l~~n~~~-~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNL-SD---LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTC-CC---CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred eeEEECCCCCCc-cc---ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeeccc
Confidence 666666665433 21 122444455555555544422 22222 34445555555555
Q ss_pred CCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCccc
Q 048627 561 CSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECL 640 (689)
Q Consensus 561 ~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l 640 (689)
|......+.....+|+.|++++|.+..++. +..+++|++|++++|.+. .+ ..+..+++|++|++++|...+ ++ .+
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~~-~~ 283 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNVGSNQISD-IS-VL 283 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCCCC-CG-GG
T ss_pred CCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEccCCccCC-Ch-hh
Confidence 443222222233577888888888877766 778888888888888763 34 457888888888888876544 33 57
Q ss_pred CCCCCCCEEEccCCCCc-cccchhhccCCCcEEecCCCCCCCCCC
Q 048627 641 GQLSSPILLNLAETNIE-RIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 641 ~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
..+++|+.|++++|.++ ..|..+..+++|+.|++++|++.+..|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 77888999999999888 445667889999999999999877555
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=210.57 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=182.5
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCC-CCCC-CcCCceeeecCCCCccccCcc-cccCccc
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SAEKLVFLEVPDNNIEQLGDC-VKHYSKL 502 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L 502 (689)
.+++.|++++|.+.+..+..+..++ +|++|++.++.+..+ |..+ .+.+|++|++++|.+..++.. +..+++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFP-----HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCCC-----CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 5899999999999887677777776 899999999999887 5556 889999999999999988765 7899999
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEE
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLL 579 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~ 579 (689)
++|+++++... ... +..+.++++|++|++++|.+....|..+..+++|++|++++|.. ..+|.. ...+|+.|+
T Consensus 107 ~~L~Ls~n~i~-~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 107 TKLDISENKIV-ILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CEEECTTSCCC-EEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEE
T ss_pred CEEECCCCccc-cCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEe
Confidence 99999987532 222 34788999999999999997777777899999999999999874 444432 236778888
Q ss_pred cccccccccCc-ccccCCCCCEEecCCCCCCCCCCc------------------------ccCCCCCccEEEeecCCCCC
Q 048627 580 LRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPS------------------------SLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 580 l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~------------------------~~~~l~~L~~L~l~~~~~~~ 634 (689)
+++|.+..++. .+..+++|+.|++++|...+.+|. .+..+++|+.|+|++|...+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 88887776544 466666666666666555444443 34555666666666655544
Q ss_pred ccCcccCCCCCCCEEEccCCCCccc-cchhhccCCCcEEecCCCCCCC
Q 048627 635 RLPECLGQLSSPILLNLAETNIERI-PKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 635 ~~p~~l~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~ 681 (689)
..+..+..+++|+.|++++|.++.+ |..+.++++|+.|++++|.+.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 4444556666666666666666643 4556667777777777776654
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4.4e-21 Score=213.93 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=71.0
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~ 478 (689)
.++.+.+..+.. ..+.+..|.++++|++|++++|.+.+..|..++.++ +|++|++.+|.+..+|. .+ .+.+
T Consensus 57 ~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 57 ELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-----SLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-----TCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred cCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-----cCCEEEccCCccccccccccCCCCC
Confidence 344444443322 234456677777777777777777776666677665 77778888887777763 34 6778
Q ss_pred ceeeecCCCCcc--ccCcccccCccchhhccccCc
Q 048627 479 LVFLEVPDNNIE--QLGDCVKHYSKLNRIIHAACN 511 (689)
Q Consensus 479 L~~L~l~~~~i~--~l~~~~~~l~~L~~l~l~~~~ 511 (689)
|++|++++|.+. .+|..+.++++|++|+++++.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 888888888776 367778888888888777653
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1e-20 Score=193.78 Aligned_cols=265 Identities=16% Similarity=0.178 Sum_probs=209.5
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCce
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLV 480 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~ 480 (689)
.++.+.+..... ..+.+..|..+++|++|++++|.+.+..|..+..++ +|++|++.++.++.+|..+. ++|+
T Consensus 53 ~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~l~~~~~-~~L~ 124 (330)
T 1xku_A 53 DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KLERLYLSKNQLKELPEKMP-KTLQ 124 (330)
T ss_dssp TCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-----TCCEEECCSSCCSBCCSSCC-TTCC
T ss_pred CCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-----CCCEEECCCCcCCccChhhc-cccc
Confidence 345555544433 334566799999999999999999888788888876 89999999999999998775 7999
Q ss_pred eeecCCCCccccCcc-cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEecc
Q 048627 481 FLEVPDNNIEQLGDC-VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLS 559 (689)
Q Consensus 481 ~L~l~~~~i~~l~~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 559 (689)
+|++++|.+..++.. +..+++|++|+++++..- .....+..+.++++|++|++++|. +..+|..+. ++|++|+++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC-GGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCC-ccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECC
Confidence 999999999987654 788999999999987532 111224567889999999999998 556777653 899999999
Q ss_pred CCCCCCCCCCC--CcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCcc
Q 048627 560 GCSKLKRLPEI--SSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRL 636 (689)
Q Consensus 560 ~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 636 (689)
+|......|.. ...+|+.|++++|.+..++. .+..+++|++|++++|.+ ..+|..+..+++|++|++++|...+.-
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCCccC
Confidence 99854433332 23689999999999997765 789999999999999987 589999999999999999998876554
Q ss_pred CcccCC------CCCCCEEEccCCCCc---cccchhhccCCCcEEecCCCC
Q 048627 637 PECLGQ------LSSPILLNLAETNIE---RIPKSIIQLFMLRYLLLNCSE 678 (689)
Q Consensus 637 p~~l~~------l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~ 678 (689)
+..+.. ..+|+.|++++|++. ..|..+..+++|+.+++++|+
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 444432 478999999999986 344667889999999999985
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.2e-20 Score=194.77 Aligned_cols=241 Identities=14% Similarity=0.200 Sum_probs=175.5
Q ss_pred hhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCC-CCCCCCCCCcCCceeeecCCCCccccCcccccC
Q 048627 421 TFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYP-LKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHY 499 (689)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~-~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l 499 (689)
.+..+++|++|++++|.+.+. +. +..++ +|+.+++.+|. ...++....+++|++|++++|.+..++. +..+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~-----~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l 176 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDI-SP-LANLT-----KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL 176 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCC-GG-GTTCT-----TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred HHcCCCcCCEEECcCCcccCc-hh-hccCC-----ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccC
Confidence 355555566666655555442 11 33332 55666666653 3333332256666677776666665544 6677
Q ss_pred ccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEE
Q 048627 500 SKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLL 579 (689)
Q Consensus 500 ~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~ 579 (689)
++|++|+++++. + ..+ ..+..+++|+.|++++|.... ++. +..+++|++|++++|......+.....+|+.|+
T Consensus 177 ~~L~~L~l~~n~-l-~~~---~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 177 TDLYSLSLNYNQ-I-EDI---SPLASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249 (347)
T ss_dssp TTCSEEECTTSC-C-CCC---GGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred CCCCEEEccCCc-c-ccc---ccccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEE
Confidence 777777777653 2 222 236788999999999988544 333 778999999999999854433333457899999
Q ss_pred cccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccc
Q 048627 580 LRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERI 659 (689)
Q Consensus 580 l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l 659 (689)
+++|.+..++ .+..+++|++|++++|.+.. +| .+..+++|+.|++++|...+..|..++.+++|+.|++++|+++.+
T Consensus 250 l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 250 IGTNQISDIN-AVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCCccCCCh-hHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 9999999874 58899999999999998744 44 578999999999999998888888899999999999999999987
Q ss_pred cchhhccCCCcEEecCCCCCC
Q 048627 660 PKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 660 p~~~~~l~~L~~L~l~~~~~l 680 (689)
+. +..+++|+.|++++|++.
T Consensus 327 ~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 RP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GG-GGGCTTCSEESSSCC---
T ss_pred cC-hhhhhccceeehhhhccc
Confidence 76 889999999999999875
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=7e-21 Score=199.83 Aligned_cols=259 Identities=15% Similarity=0.131 Sum_probs=202.9
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~ 478 (689)
.++.+.+..... ..+.+..|..+++|++|++++|.+.+..|..++.++ +|++|++.++.+..+|..+ .+++
T Consensus 70 ~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 70 QVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----LLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp CCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-----CCCEEECCCCccCcCCHHHhcCCCC
Confidence 355555544433 234566889999999999999998887677777776 8999999999999999864 6899
Q ss_pred ceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCC-------------------cccEEeccCCC
Q 048627 479 LVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLN-------------------KLVFLNLRGSK 538 (689)
Q Consensus 479 L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~-------------------~L~~L~l~~~~ 538 (689)
|++|++++|.+..++. .+..+++|++|+++++. + ..++ +..++ +|+.|++++|.
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l-~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-L-THVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-C-SBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCc-C-Cccc----cccccccceeecccccccccCCCCcceEEECCCCe
Confidence 9999999999987754 58889999999998864 2 2221 23334 45555555555
Q ss_pred CCcccCccCCCCCCCCEEeccCCCCCCCCCC-CCcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCccc
Q 048627 539 SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE-ISSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSL 616 (689)
Q Consensus 539 ~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~-~~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~ 616 (689)
. ..+|.. .+++|++|++++|.... .+. ....+|+.|++++|.+..+ |..+..+++|++|++++|.+ ..+|..+
T Consensus 217 l-~~~~~~--~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~ 291 (390)
T 3o6n_A 217 I-NVVRGP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYG 291 (390)
T ss_dssp C-CEEECC--CCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSS
T ss_pred e-eecccc--ccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCccc
Confidence 2 333432 35789999999987544 332 2347899999999999865 77899999999999999987 5677778
Q ss_pred CCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCC
Q 048627 617 CKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 617 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l 680 (689)
..+++|++|++++|.. ..+|..++.+++|+.|++++|.++.+| +..+++|+.|++++|++.
T Consensus 292 ~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 8899999999999865 477878888999999999999999887 678899999999999874
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.9e-21 Score=197.90 Aligned_cols=249 Identities=19% Similarity=0.163 Sum_probs=123.2
Q ss_pred ChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcc-c
Q 048627 418 NPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDC-V 496 (689)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~ 496 (689)
.+..|..+++|++|++++|.+.+..|..+..++ +|++|++.++.+..+|..+. .+|++|++++|.+..++.. +
T Consensus 70 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 70 RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-----KLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-----TCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGG
T ss_pred CHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-----CCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHh
Confidence 344555566666666665555554444455444 55555666665555555444 5566666666655555443 4
Q ss_pred ccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC--CcCC
Q 048627 497 KHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI--SSGN 574 (689)
Q Consensus 497 ~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~ 574 (689)
..+++|++|+++++..- .....+..+..+ +|++|++++|. +..+|..+. ++|++|++++|......|.. ...+
T Consensus 144 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLE-NSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp SSCSSCCEEECCSCCCB-GGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred CCCccCCEEECCCCccc-cCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 55555555555554311 100112233444 55556665555 333444332 45555666555433222221 1245
Q ss_pred CcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCC------CCCCC
Q 048627 575 ISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQ------LSSPI 647 (689)
Q Consensus 575 L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~------l~~L~ 647 (689)
|+.|++++|.+..++. .+..+++|++|++++|.+ ..+|..++.+++|++|++++|...+.-+..+.. ..+|+
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 5555665555554443 455555666666665554 355555555566666666555444333333322 23455
Q ss_pred EEEccCCCCc---cccchhhccCCCcEEecCCCC
Q 048627 648 LLNLAETNIE---RIPKSIIQLFMLRYLLLNCSE 678 (689)
Q Consensus 648 ~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~ 678 (689)
.|++++|++. ..|..+..+++|+.|++++|+
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5666555554 222334555556666555553
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9.3e-21 Score=194.13 Aligned_cols=242 Identities=17% Similarity=0.158 Sum_probs=204.2
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCC-CCCC-CcCCceeeecCCCCccccCcccccCccch
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
++|+.|++++|.+.+..|..+..++ +|++|++.++.+..+ |..+ .+++|++|++++|.+..+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQ-----HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCC-----CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 6899999999998876666777776 899999999999888 4456 78999999999999999888765 7999
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCC--cccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSL--KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
+|+++++. + ..++ ...+.++++|++|++++|... +..|..+..+ +|++|++++|. +..+|.....+|+.|+++
T Consensus 127 ~L~l~~n~-i-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 127 ELRIHDNR-I-RKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLD 201 (332)
T ss_dssp EEECCSSC-C-CCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCC
T ss_pred EEECCCCc-c-CccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECC
Confidence 99999865 3 3333 235788999999999999864 3566677777 99999999987 556787777899999999
Q ss_pred cccccccC-cccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc
Q 048627 582 GSAIEELP-SSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 582 ~~~l~~l~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
+|.+..++ ..+..+++|++|++++|.+.+..+..++.+++|++|++++|... .+|..++.+++|+.|++++|.++.+|
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 99999876 67899999999999999997777778999999999999998655 89988999999999999999999777
Q ss_pred ch-hhc------cCCCcEEecCCCCCC
Q 048627 661 KS-IIQ------LFMLRYLLLNCSEGH 680 (689)
Q Consensus 661 ~~-~~~------l~~L~~L~l~~~~~l 680 (689)
.. +.. .++|+.|++.+|++.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhHccccccccccccccceEeecCccc
Confidence 43 332 467999999999986
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=212.79 Aligned_cols=247 Identities=15% Similarity=0.125 Sum_probs=176.8
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCC-CCCC-CcCCceeeecCCCCccccCcccccCccch
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+ |..+ .+++|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS-----KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT-----TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccChhhccccc-----cccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 7999999999999887666777776 899999999999988 4556 889999999999999998887 899999
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCC--CEEeccCCCC--CCCCCCCC--------
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK--LKRLPEIS-------- 571 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L--~~L~l~~~~~--l~~~p~~~-------- 571 (689)
+|+++++. + ..++.+..++++++|++|++++|.+.+ ..+..+++| ++|++++|.. ....|...
T Consensus 94 ~L~L~~N~-l-~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 94 HLDLSFNA-F-DALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp EEECCSSC-C-SSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred EEeccCCc-c-ccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 99999875 3 334445688899999999999887543 224445555 6666665543 11111100
Q ss_pred -----------------------------------------------------------------------------cCC
Q 048627 572 -----------------------------------------------------------------------------SGN 574 (689)
Q Consensus 572 -----------------------------------------------------------------------------~~~ 574 (689)
..+
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 014
Q ss_pred CcEEEccccccc-ccCccc-----------------------------------------------------ccCCCCCE
Q 048627 575 ISWLLLRGSAIE-ELPSSI-----------------------------------------------------ERQLRLSW 600 (689)
Q Consensus 575 L~~L~l~~~~l~-~l~~~i-----------------------------------------------------~~l~~L~~ 600 (689)
|+.|++++|.+. .+|..+ ..+++|++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 555555555544 444433 45677777
Q ss_pred EecCCCCCCCCCCcccCCCCCccEEEeecCCCCC--ccCcccCCCCCCCEEEccCCCCcc-ccch-hhccCCCcEEecCC
Q 048627 601 LDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR--RLPECLGQLSSPILLNLAETNIER-IPKS-IIQLFMLRYLLLNC 676 (689)
Q Consensus 601 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~-lp~~-~~~l~~L~~L~l~~ 676 (689)
|++++|.+.+.+|..++.+++|++|++++|...+ .+|..++.+++|+.|++++|.++. +|.. +..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 7777777766677777777888888887777665 556667777778888888777775 6654 55667777777777
Q ss_pred CCCCCCCC
Q 048627 677 SEGHESIP 684 (689)
Q Consensus 677 ~~~l~~~p 684 (689)
|.+.+.+|
T Consensus 409 N~l~~~~~ 416 (520)
T 2z7x_B 409 NILTDTIF 416 (520)
T ss_dssp SCCCGGGG
T ss_pred CCCCcchh
Confidence 77665554
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.2e-20 Score=201.88 Aligned_cols=221 Identities=22% Similarity=0.234 Sum_probs=165.9
Q ss_pred cceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccE
Q 048627 455 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVF 531 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~ 531 (689)
.++++|++.++.+..++. .+ .+.+|++|++++|.+..++ ..+..+++|++|+++++. + ..++ ...+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l-~~~~-~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-L-TVIP-SGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C-SBCC-TTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-C-CccC-hhhhcccCCCCE
Confidence 466777777777766643 33 6777788888777777664 457777778888777754 3 3333 235677888888
Q ss_pred EeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcccccccccCcccccCCCCCEEecCCCCC
Q 048627 532 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKM 608 (689)
Q Consensus 532 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~ 608 (689)
|+|++|.+....+..+..+++|++|++++|..++.+|... ..+|++|++++|.+..+|. +..+++|+.|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcC
Confidence 8888887554444467788888888888887777776543 3577888888888888764 77888888888888888
Q ss_pred CCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccch-hhccCCCcEEecCCCCC
Q 048627 609 FKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKS-IIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 609 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 679 (689)
.+..|..+.++++|+.|++++|...+..|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 777788888888888888888887777777888888888888888888877754 57788888888888875
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=200.41 Aligned_cols=221 Identities=20% Similarity=0.249 Sum_probs=176.0
Q ss_pred cceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccE
Q 048627 455 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVF 531 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~ 531 (689)
.+++.|+++++.+..++. .+ .+++|++|++++|.+..++ ..+..+++|++|+++++. + ..++ ...+.++++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l-~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-L-TTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-C-SSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-C-CeeC-HhHhhccccCce
Confidence 467778888888777764 34 6788888888888888765 457788888888888763 3 3333 245778888999
Q ss_pred EeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcccccccccCcccccCCCCCEEecCCCCC
Q 048627 532 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKM 608 (689)
Q Consensus 532 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~ 608 (689)
|+|++|.+....+..+..+++|++|++++|..+..+|... ..+|+.|++++|.++.+|. +..+++|+.|++++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence 9999888554445567888999999999888777777643 3678899999998888874 78888999999999988
Q ss_pred CCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccch-hhccCCCcEEecCCCCC
Q 048627 609 FKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKS-IIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 609 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 679 (689)
.+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 777788888999999999999888777778888899999999999999877754 57788999999998875
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.7e-21 Score=211.16 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=199.4
Q ss_pred CCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCcc-cccCc
Q 048627 424 KMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGDC-VKHYS 500 (689)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~ 500 (689)
.+.+++.++++++.+....+..+..++ +|++|++.++.+..+|+ .+ .+.+|++|++++|.+..++.. +..++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 367899999999887654333355565 89999999999999886 55 889999999999999988665 68999
Q ss_pred cchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcE---
Q 048627 501 KLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW--- 577 (689)
Q Consensus 501 ~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~--- 577 (689)
+|++|+++++. + ..+| +..++++++|++|+|++|.+.+..|..++.+++|++|++++|.. ..++...+.+|+.
T Consensus 124 ~L~~L~L~~n~-l-~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERND-L-SSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSC-C-CCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEEC
T ss_pred CCCEEEeeCCC-C-CCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhc
Confidence 99999999874 4 3444 23468999999999999998777777899999999999999874 3344333344444
Q ss_pred ----------------EEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccC
Q 048627 578 ----------------LLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLG 641 (689)
Q Consensus 578 ----------------L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 641 (689)
|++++|.+..+|..+ .++|+.|++++|.+.+ +..++.+++|+.|+|++|...+..|..++
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 455555554444333 3579999999998754 46789999999999999999888899999
Q ss_pred CCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCC
Q 048627 642 QLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 642 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.. +|
T Consensus 276 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~ 317 (597)
T 3oja_B 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VE 317 (597)
T ss_dssp TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CG
T ss_pred CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cC
Confidence 9999999999999999999888889999999999999874 54
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.6e-21 Score=211.98 Aligned_cols=271 Identities=17% Similarity=0.170 Sum_probs=179.5
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~ 478 (689)
.++.+.+...... .+.+..|..+++|++|++++|.+.+..|..+..++ +|++|++++|.+..+|+. + .+++
T Consensus 27 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 27 AMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-----SLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccc-----cCCEEECCCCccCccCHHHhccCCC
Confidence 4566666554432 34456788888888888888888776666677765 788888888888888775 4 7788
Q ss_pred ceeeecCCCCccc--cCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCC-------
Q 048627 479 LVFLEVPDNNIEQ--LGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFN------- 549 (689)
Q Consensus 479 L~~L~l~~~~i~~--l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~------- 549 (689)
|++|++++|.+.. .+..+..+++|++|+++++..+ ..++ ...+.++++|++|++++|.+.+..|..++.
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccc-cccC-HhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 8888888888874 3566788888888888877544 3343 235677778888888877766666655544
Q ss_pred -----------------CCCCCEEeccCCCCCCC----CCC---------------------------------------
Q 048627 550 -----------------LEFLTKLDLSGCSKLKR----LPE--------------------------------------- 569 (689)
Q Consensus 550 -----------------l~~L~~L~l~~~~~l~~----~p~--------------------------------------- 569 (689)
+++|++|++++|...+. .+.
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 44555555555543221 000
Q ss_pred -------------------------------------------------CCcCCCcEEEcccccccccCccc-ccCCCCC
Q 048627 570 -------------------------------------------------ISSGNISWLLLRGSAIEELPSSI-ERQLRLS 599 (689)
Q Consensus 570 -------------------------------------------------~~~~~L~~L~l~~~~l~~l~~~i-~~l~~L~ 599 (689)
...++|+.|++++|.+..+|..+ ..+++|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence 00024555666666666666655 4678888
Q ss_pred EEecCCCCCCCCCC---cccCCCCCccEEEeecCCCCCccC--cccCCCCCCCEEEccCCCCccccchhhccCCCcEEec
Q 048627 600 WLDLTDCKMFKSLP---SSLCKLKSLGVLDLHGCSNLRRLP--ECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLL 674 (689)
Q Consensus 600 ~L~l~~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 674 (689)
+|++++|.+.+.+| ..++.+++|++|++++|...+..+ ..++.+++|+.|++++|.++.+|..+..+++|+.|++
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence 88888887766553 236677777777777766543221 3456677777777777777777776666666777777
Q ss_pred CCCCCC
Q 048627 675 NCSEGH 680 (689)
Q Consensus 675 ~~~~~l 680 (689)
++|.+.
T Consensus 418 s~N~l~ 423 (549)
T 2z81_A 418 SSTGIR 423 (549)
T ss_dssp TTSCCS
T ss_pred CCCCcc
Confidence 666653
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=4.5e-20 Score=196.66 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=139.4
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCcc
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
+..+++|++|++++|.+.+. + ++.++ +|++|++.++.+..+| ...+++|++|++++|.++.++ +..+++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~-----~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~ 149 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--VTPLT-----KLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQ 149 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTTCT-----TCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTT
T ss_pred cccCCCCCEEECcCCCCcee-e--cCCCC-----cCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCc
Confidence 45555666666666655543 1 33333 5666666666666654 225566666666666666542 555666
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
|++|+++++..+ ..+ .+..+++|++|++++|.+ ..+| ++.+++|++|++++|.. ..++-....+|+.|+++
T Consensus 150 L~~L~l~~n~~~-~~~----~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 150 LTELDCHLNKKI-TKL----DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCS 220 (457)
T ss_dssp CCEEECTTCSCC-CCC----CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECC
T ss_pred CCEEECCCCCcc-ccc----ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcC-CeeccccCCCCCEEECc
Confidence 666666655433 222 244556666666666653 2243 45555566665555542 22232233455566666
Q ss_pred cccccccCcccccCCCCCEEecCCCCCCCCCCcc-----------------------------cCCCCCccEEEeecCCC
Q 048627 582 GSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSS-----------------------------LCKLKSLGVLDLHGCSN 632 (689)
Q Consensus 582 ~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~-----------------------------~~~l~~L~~L~l~~~~~ 632 (689)
+|.++.+| +..+++|++|++++|.+.+..+.. ++.+++|+.|++++|..
T Consensus 221 ~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 221 SNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp SSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred CCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 55555554 555555555555555543322111 23456667777777666
Q ss_pred CCccCc--------ccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCCCC
Q 048627 633 LRRLPE--------CLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPKRP 687 (689)
Q Consensus 633 ~~~~p~--------~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 687 (689)
++.+|. .+..+++|+.|++++|+++.++ +.++++|+.|++++|++.+ +|.++
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~-l~~L~ 358 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD-FSSVG 358 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB-CTTGG
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC-ccccc
Confidence 555553 2445678888888888888774 7888999999999988876 55544
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=9e-21 Score=208.99 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=178.8
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCC-CCC-CcCCceeeecCCCCccccCcccccCccch
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLP-SNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp-~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
++|+.|++++|.+.+..|..+..++ +|++|++++|.++.++ ..+ .+++|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLS-----ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCT-----TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccChhhhccCC-----CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 7899999999999887777788776 8999999999999885 445 789999999999999999887 899999
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCC--CEEeccCCCC--CCCCCCCC--------
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK--LKRLPEIS-------- 571 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L--~~L~l~~~~~--l~~~p~~~-------- 571 (689)
+|+++++. + ..++.+..+.++++|++|++++|.+... .+..+++| ++|++++|.. ....|...
T Consensus 125 ~L~Ls~N~-l-~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 125 HLDLSFND-F-DVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp EEECCSSC-C-SBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred EEECCCCC-c-cccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 99999875 4 4555556889999999999999875442 23344444 7777776654 21111100
Q ss_pred ---------------------------------------------------------------------------cCCCc
Q 048627 572 ---------------------------------------------------------------------------SGNIS 576 (689)
Q Consensus 572 ---------------------------------------------------------------------------~~~L~ 576 (689)
..+|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 01455
Q ss_pred EEEccccccc-ccCccc-----------------------------------------------------ccCCCCCEEe
Q 048627 577 WLLLRGSAIE-ELPSSI-----------------------------------------------------ERQLRLSWLD 602 (689)
Q Consensus 577 ~L~l~~~~l~-~l~~~i-----------------------------------------------------~~l~~L~~L~ 602 (689)
+|++++|.+. .+|..+ ..+++|++|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 359 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence 5555555544 444433 5667788888
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCC--ccCcccCCCCCCCEEEccCCCCcc-ccch-hhccCCCcEEecCCCC
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR--RLPECLGQLSSPILLNLAETNIER-IPKS-IIQLFMLRYLLLNCSE 678 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~-lp~~-~~~l~~L~~L~l~~~~ 678 (689)
+++|.+.+.+|..++++++|++|++++|...+ .+|..++.+++|+.|++++|.++. +|.. +..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 88888777777778888888888888876554 445567777888888888888775 6654 4556667777777776
Q ss_pred CCCCCC
Q 048627 679 GHESIP 684 (689)
Q Consensus 679 ~l~~~p 684 (689)
+.+.+|
T Consensus 440 l~~~~~ 445 (562)
T 3a79_B 440 LTGSVF 445 (562)
T ss_dssp CCGGGG
T ss_pred CCcchh
Confidence 655544
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=8.3e-21 Score=192.22 Aligned_cols=225 Identities=18% Similarity=0.227 Sum_probs=134.0
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCC---CCCC-CcCCceeeecCCCCccccCcccccCcc
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSL---PSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l---p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
++|+.|++++|.+....+..+..++ +|++|++.++.+..+ |..+ .+.+|++|++++|.+..++..+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLT-----QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccc-----cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 4667777777666543222244443 666677776666544 2222 566777777777777766666666777
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCC-CCCCCC--cCCCcEE
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNISWL 578 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~-~~p~~~--~~~L~~L 578 (689)
|++|+++++. + ..++....+.++++|++|++++|...+..|..+..+++|++|++++|.... .+|... ..+|+.|
T Consensus 103 L~~L~l~~n~-l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSN-L-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSE-E-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCc-c-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 7777776643 2 333333456666777777777776555555566667777777777665433 233221 2456666
Q ss_pred Eccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCC-CCCEEEccCCCC
Q 048627 579 LLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLS-SPILLNLAETNI 656 (689)
Q Consensus 579 ~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~l 656 (689)
++++|.+..+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+..|..+..++ +|+.|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 6666666654 44556666666666666665444444556666666666666666655565555553 566666666665
Q ss_pred c
Q 048627 657 E 657 (689)
Q Consensus 657 ~ 657 (689)
+
T Consensus 261 ~ 261 (306)
T 2z66_A 261 A 261 (306)
T ss_dssp E
T ss_pred e
Confidence 4
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=3.7e-20 Score=199.02 Aligned_cols=238 Identities=19% Similarity=0.223 Sum_probs=118.8
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCcc
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
+..+++|++|++++|.+.+..+ +..++ +|++|++.+|.+..+|....+++|++|++++|.+..++. +..+++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 157 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLT-----NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTS 157 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTT
T ss_pred hhccccCCEEECCCCccccChh--hcCCC-----CCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCc
Confidence 4445555555555544443321 33332 455555555555555443345555555555555444332 344444
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
|+.|.+... + . ....+.++++|++|++++|.. ..++ .+..+++|++|++++|......|.....+|+.|+++
T Consensus 158 L~~L~l~~~--~-~---~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 158 LQQLSFGNQ--V-T---DLKPLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229 (466)
T ss_dssp CSEEEEEES--C-C---CCGGGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred ccEeecCCc--c-c---CchhhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence 444444321 1 1 112355667777777777663 3333 256677777777777664444343334566666666
Q ss_pred cccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccc
Q 048627 582 GSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPK 661 (689)
Q Consensus 582 ~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~ 661 (689)
+|.+..++ .+..+++|+.|++++|.+.+..| +..+++|+.|++++|...+..+ +..+++|+.|++++|.++.++.
T Consensus 230 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 230 GNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp SSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred CCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence 66665553 35556666666666665533222 4555555555555554333221 4445555555555555544432
Q ss_pred hhhccCCCcEEecCCCCCCC
Q 048627 662 SIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 662 ~~~~l~~L~~L~l~~~~~l~ 681 (689)
+..+++|+.|++++|++.+
T Consensus 305 -~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSC
T ss_pred -hcCCCCCCEEECcCCcCCC
Confidence 4444445555554444443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=3.9e-20 Score=197.15 Aligned_cols=251 Identities=18% Similarity=0.162 Sum_probs=181.2
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCce
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLV 480 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~ 480 (689)
.++.+.+.......+ + .+..+++|++|++++|.+.+. | ++.++ +|++|++.+|.+..+| ...+++|+
T Consensus 43 ~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~-----~L~~L~Ls~N~l~~~~-~~~l~~L~ 109 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTL-D--LSQNT-----NLTYLACDSNKLTNLD-VTPLTKLT 109 (457)
T ss_dssp TCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCC-C--CTTCT-----TCSEEECCSSCCSCCC-CTTCTTCC
T ss_pred CCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeE-c--cccCC-----CCCEEECcCCCCceee-cCCCCcCC
Confidence 455566555444332 2 578888888888888887764 2 45554 7888888888888876 33778888
Q ss_pred eeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccC
Q 048627 481 FLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSG 560 (689)
Q Consensus 481 ~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 560 (689)
+|++++|.++.++ +..+++|++|+++++. + ..+ .++++++|++|++++|...+.+ .++.+++|++|++++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l-~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNT-L-TEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSC-C-SCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCc-c-cee----ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 8888888888764 7788888888888764 3 222 2677888888888888766666 367888888888888
Q ss_pred CCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCccc
Q 048627 561 CSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECL 640 (689)
Q Consensus 561 ~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l 640 (689)
|. ++.+|.....+|+.|++++|.++.++ ++.+++|++|++++|.+.+ +| ++.+++|+.|++++|...+.. +
T Consensus 180 n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~ 250 (457)
T 3bz5_A 180 NK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---V 250 (457)
T ss_dssp SC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred Cc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---H
Confidence 76 44466555577888888888888773 7788888899998888755 66 778888999999888766543 3
Q ss_pred CCCCCCCEEEccCCCCc-----------cccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 641 GQLSSPILLNLAETNIE-----------RIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 641 ~~l~~L~~L~l~~~~l~-----------~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
+.+++|+.|++++|+++ .+| ++.+++|+.|++++|+.++.+|.
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 44555655555554443 333 35678999999999998888773
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=3.9e-20 Score=213.36 Aligned_cols=272 Identities=16% Similarity=0.103 Sum_probs=172.0
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCC-cccccccCcccccceeEEEecCCCCCCC-CCCC-CcC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGEN-KCKVSYLQDPAFAEVKYFHWHGYPLKSL-PSNL-SAE 477 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~~~L~~l~~~~~~~~~l-p~~~-~~~ 477 (689)
.++.+.+..+... .+.+..|..+.+|++|++++|...+.+ |..+..++ +|++|++++|.+..+ |..+ .+.
T Consensus 25 ~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-----~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 25 TTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-----NLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp TCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-----TCCEEECTTCCCCEECTTSSCSCS
T ss_pred CcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-----CCCEEECCCCcCcccCHhHccCCc
Confidence 3444544443322 233455666666666666666444443 34455554 566666666666554 4444 556
Q ss_pred CceeeecCCCCccc-cCcc--cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCc-------------
Q 048627 478 KLVFLEVPDNNIEQ-LGDC--VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLK------------- 541 (689)
Q Consensus 478 ~L~~L~l~~~~i~~-l~~~--~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------- 541 (689)
+|++|++++|.+.. .+.. +..+++|++|+++++.. ...+....++++++|++|++++|.+.+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l--~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI--RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC--CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc--cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 66666666666653 2332 55666666666665432 122222345556666666665555433
Q ss_pred -------------ccCccCCCCCC------CCEEeccCCCCCCCCCCC--------------------------------
Q 048627 542 -------------SLPSEIFNLEF------LTKLDLSGCSKLKRLPEI-------------------------------- 570 (689)
Q Consensus 542 -------------~~p~~l~~l~~------L~~L~l~~~~~l~~~p~~-------------------------------- 570 (689)
..|..++.+++ |++|++++|......|..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 33333333333 777887777433222210
Q ss_pred --------CcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccC
Q 048627 571 --------SSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLG 641 (689)
Q Consensus 571 --------~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 641 (689)
...+|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..++
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 014678888888887755 45678888999999999988777777888899999999999887777788888
Q ss_pred CCCCCCEEEccCCCCccccc-hhhccCCCcEEecCCCCCCC
Q 048627 642 QLSSPILLNLAETNIERIPK-SIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 642 ~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~ 681 (689)
.+++|+.|++++|.+..++. .+.++++|+.|++++|.+.+
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88999999999998886664 46778889999998887654
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.8e-20 Score=208.36 Aligned_cols=270 Identities=19% Similarity=0.124 Sum_probs=168.7
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcC
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAE 477 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~ 477 (689)
..++.+.+..... ..+++..|.++++|++|++++|.+.+..|..+..++ +|++|++.++.+..+|.. + .+.
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-----MLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc-----CcCEEECCCCccCccChhhhccCC
Confidence 3566666655543 235567789999999999999988887777777776 888999999999999874 5 788
Q ss_pred CceeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCC--CCCCCC
Q 048627 478 KLVFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIF--NLEFLT 554 (689)
Q Consensus 478 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~ 554 (689)
+|++|++++|.+..++ ..+..+++|++|+++++.-. .. .+..+.++++|++|++++|.+.+..|..+. .+++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-ST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCccc-cc--CchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 9999999999998876 46888999999999887522 22 234677888888888888875544443332 456778
Q ss_pred EEeccCCCCCCCCCCCC-----------------------------cCCCcEEEccccccccc-CcccccCCC--CCEEe
Q 048627 555 KLDLSGCSKLKRLPEIS-----------------------------SGNISWLLLRGSAIEEL-PSSIERQLR--LSWLD 602 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~~-----------------------------~~~L~~L~l~~~~l~~l-~~~i~~l~~--L~~L~ 602 (689)
+|++++|......|... ..+|+.|++++|.+... |..+..++. |+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 88887775433222110 02344444444444422 223333322 55555
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcc---------------------------------cCCCCCCCEE
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPEC---------------------------------LGQLSSPILL 649 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~---------------------------------l~~l~~L~~L 649 (689)
+++|.+.+..|..++.+++|++|++++|...+..|.. ++.+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 5555444444444445555555555554444433333 4445555566
Q ss_pred EccCCCCcccc-chhhccCCCcEEecCCCCC
Q 048627 650 NLAETNIERIP-KSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 650 ~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 679 (689)
++++|.+..++ ..+.++++|+.|++++|.+
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 66555555333 3355566666666666653
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=214.82 Aligned_cols=254 Identities=15% Similarity=0.112 Sum_probs=200.6
Q ss_pred CCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCC-CCCC-CCCC-CcCCceeeecCCCCcccc-CcccccC
Q 048627 424 KMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYP-LKSL-PSNL-SAEKLVFLEVPDNNIEQL-GDCVKHY 499 (689)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~-~~~l-p~~~-~~~~L~~L~l~~~~i~~l-~~~~~~l 499 (689)
..++++.|++++|.+.+..|..+..++ +|++|++++|. ...+ |..+ .+++|++|++++|.+..+ |..+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~-----~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE-----QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC-----SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc-----cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 457899999999999887777888886 89999999984 4566 5556 889999999999999877 7789999
Q ss_pred ccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCCCc----C-
Q 048627 500 SKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS----G- 573 (689)
Q Consensus 500 ~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~~~----~- 573 (689)
++|++|+++++.-. ...+....+.++++|++|+|++|.+.+..| ..++++++|++|++++|......|.... .
T Consensus 97 ~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 97 FHLFELRLYFCGLS-DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp SSCCCEECTTCCCS-SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred cccCEeeCcCCCCC-cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999987532 334444458999999999999999766544 5689999999999999875433222110 1
Q ss_pred -----------------------------CCcEEEccccccc-ccCcccc------------------------------
Q 048627 574 -----------------------------NISWLLLRGSAIE-ELPSSIE------------------------------ 593 (689)
Q Consensus 574 -----------------------------~L~~L~l~~~~l~-~l~~~i~------------------------------ 593 (689)
.|+.|++++|.+. ..+..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 2677777776543 1221111
Q ss_pred ------c--CCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccc-cchhh
Q 048627 594 ------R--QLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERI-PKSII 664 (689)
Q Consensus 594 ------~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~~~ 664 (689)
. .++|+.|++++|.+.+..|..+..+++|+.|++++|...+..|..++.+++|+.|++++|.++.+ |..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1 26789999999988777788889999999999999988888888899999999999999999855 67788
Q ss_pred ccCCCcEEecCCCCCCCCC
Q 048627 665 QLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 665 ~l~~L~~L~l~~~~~l~~~ 683 (689)
.+++|+.|++++|.+....
T Consensus 336 ~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp SCTTCCEEECCSCCCCCCC
T ss_pred CCCCCCEEECCCCCCCccC
Confidence 9999999999999875543
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=6.8e-20 Score=183.36 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=97.5
Q ss_pred CceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCccc-CccCCCCCCCCE
Q 048627 478 KLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSL-PSEIFNLEFLTK 555 (689)
Q Consensus 478 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~ 555 (689)
+|++|++++|.+..++. .+..+++|++|+++++. + ..++ +..+.++++|++|++++|..++.+ |..+..+++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l-~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-L-ARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C-CEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-c-ceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 44444444444444332 24444444444444432 1 1111 123444455555555555422222 344445555555
Q ss_pred EeccCCCCCCCCCCC--CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC
Q 048627 556 LDLSGCSKLKRLPEI--SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN 632 (689)
Q Consensus 556 L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 632 (689)
|++++|......|.. ...+|++|++++|.+..++.. +..+++|++|++++|.+....+..+..+++|++|++++|..
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 555554433222221 123455555555555544432 45556666666666655333333455566666666666555
Q ss_pred CCccCcccCCCCCCCEEEccCCCCccccc-hhhccCCCcEEecCCCCCC
Q 048627 633 LRRLPECLGQLSSPILLNLAETNIERIPK-SIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 633 ~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l 680 (689)
.+..|..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55555555556666666666666665543 3555666666666666554
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=197.43 Aligned_cols=253 Identities=16% Similarity=0.192 Sum_probs=197.8
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCcc-cccCccc
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGDC-VKHYSKL 502 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L 502 (689)
++|+.|++++|.+.+..+..+..++ +|++|++.++.+..++. .+ .+++|++|++++|.++.++.. +..+++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCV-----NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCC-----CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 4789999999888765444566665 88889999998888765 35 778999999999999888776 7888999
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCccc-CccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEE
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLL 579 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~ 579 (689)
++|+++++. + ..++....+.++++|++|++++|...+.+ |..+..+++|++|++++|......|... ..+|+.|+
T Consensus 127 ~~L~L~~n~-l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 127 TFLNLLGNP-Y-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp SEEECTTCC-C-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CEEECCCCC-C-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 999998764 3 44554346788899999999988545555 5568889999999999987554444432 25678999
Q ss_pred cccccccccCccc-ccCCCCCEEecCCCCCCCCCCccc---CCCCCccEEEeecCCCCC----ccCcccCCCCCCCEEEc
Q 048627 580 LRGSAIEELPSSI-ERQLRLSWLDLTDCKMFKSLPSSL---CKLKSLGVLDLHGCSNLR----RLPECLGQLSSPILLNL 651 (689)
Q Consensus 580 l~~~~l~~l~~~i-~~l~~L~~L~l~~~~~~~~lp~~~---~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l 651 (689)
+++|.+..+|..+ ..+++|+.|++++|.+.+..+..+ .....++.++++++...+ .+|..++.+++|+.|++
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 9999988877654 458999999999998865444332 346788899999887654 47778889999999999
Q ss_pred cCCCCccccchh-hccCCCcEEecCCCCCCCCCCC
Q 048627 652 AETNIERIPKSI-IQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 652 ~~~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
++|.++.+|..+ .++++|+.|++++|++.+..|.
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 999999999885 8899999999999999887663
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=205.81 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=52.3
Q ss_pred CCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC-CccCcccCCCCCCCEEEccCCCCccc-cchhhccCCCcEE
Q 048627 595 QLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL-RRLPECLGQLSSPILLNLAETNIERI-PKSIIQLFMLRYL 672 (689)
Q Consensus 595 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L 672 (689)
+++|++|++++|.+.+..|..+..+++|++|++++|... +.+|..++.+++|+.|++++|.++.+ |.++.++++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 334444444444443344444555555666666555544 34666666666677777777766644 5566667777777
Q ss_pred ecCCCCCCCCCC
Q 048627 673 LLNCSEGHESIP 684 (689)
Q Consensus 673 ~l~~~~~l~~~p 684 (689)
++++|.+.+..|
T Consensus 500 ~l~~n~l~~~~~ 511 (570)
T 2z63_A 500 NMASNQLKSVPD 511 (570)
T ss_dssp ECCSSCCSCCCT
T ss_pred eCCCCcCCCCCH
Confidence 777776665444
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.3e-19 Score=194.64 Aligned_cols=244 Identities=16% Similarity=0.164 Sum_probs=157.1
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcc----------------cccceeEEEecCCCCCCCCCCCCcCCceeeecC
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDP----------------AFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVP 485 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l----------------~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~ 485 (689)
+..+++|+.|++++|.+.+. + .+..++++ ...+|+.|++.++.+..++....+++|++|+++
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence 66666677777766655442 1 13333211 123566666666666666543356667777777
Q ss_pred CCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCC
Q 048627 486 DNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK 565 (689)
Q Consensus 486 ~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~ 565 (689)
+|.+..++. +..+++|+.|+++++. + .. ...+..+++|++|++++|...+. +. +..+++|++|++++|....
T Consensus 208 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l-~~---~~~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 208 NNQISDITP-LGILTNLDELSLNGNQ-L-KD---IGTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSC-C-CC---CGGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCC
T ss_pred CCccccccc-ccccCCCCEEECCCCC-c-cc---chhhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccCc
Confidence 766665543 5556667777776653 2 11 23456677777777777764433 32 6677777777777776443
Q ss_pred CCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCC
Q 048627 566 RLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSS 645 (689)
Q Consensus 566 ~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 645 (689)
..|...+.+|+.|++++|.+..++. +..+++|+.|++++|.+.+..| +..+++|+.|++++|...+. ..+..+++
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 280 ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 3332334677788888777776655 6777888888888887755444 56778888888887765543 35677788
Q ss_pred CCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 646 PILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 646 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
|+.|++++|.++.++. +.++++|+.|++++|++.+
T Consensus 355 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 8888888888775554 7778888888888887766
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=5.9e-20 Score=195.58 Aligned_cols=252 Identities=18% Similarity=0.178 Sum_probs=170.2
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCccccc--------ceeEEEecCCCCCCCCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFA--------EVKYFHWHGYPLKSLPS 472 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~--------~L~~l~~~~~~~~~lp~ 472 (689)
.++.+.+..... ...|..++++++|++|++++|.+.+.+|..++.+.++... +++.+++.++.++.+|.
T Consensus 12 ~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cchhhhcccCch---hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 344444444332 3456779999999999999999998899888887754222 35889999999999887
Q ss_pred CCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCC
Q 048627 473 NLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEF 552 (689)
Q Consensus 473 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 552 (689)
. .++|++|++++|.++.+|.. +.+|++|+++++. + ..++. + .++|++|++++|.+. .+| .++.+++
T Consensus 89 ~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l-~~l~~---~--~~~L~~L~L~~n~l~-~lp-~~~~l~~ 154 (454)
T 1jl5_A 89 L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-L-KALSD---L--PPLLEYLGVSNNQLE-KLP-ELQNSSF 154 (454)
T ss_dssp C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-C-SCCCS---C--CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred C--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-c-CcccC---C--CCCCCEEECcCCCCC-CCc-ccCCCCC
Confidence 4 47899999999999888754 3678888888753 3 22221 1 168999999988854 477 4889999
Q ss_pred CCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC
Q 048627 553 LTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN 632 (689)
Q Consensus 553 L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 632 (689)
|++|++++|. +..+|... .+|++|++++|.+..+| .++.+++|++|++++|.+. .+|.. .++|++|++++|..
T Consensus 155 L~~L~l~~N~-l~~lp~~~-~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 155 LKIIDVDNNS-LKKLPDLP-PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp CCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCC
T ss_pred CCEEECCCCc-CcccCCCc-ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccEEECcCCcC
Confidence 9999999986 44577654 68899999999888887 5888888888888888764 35543 24777777777654
Q ss_pred CCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 633 LRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 633 ~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
. .+|. ++.+++|+.|++++|.++.+|.. +++|+.|++++|.+.+
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 4 6663 66777777777777777766643 2456666666655443
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=7.6e-20 Score=201.38 Aligned_cols=69 Identities=10% Similarity=0.227 Sum_probs=35.4
Q ss_pred ChhhhhCCCCcceEEeccccCCC-CCcccccccCcccccceeEEEecCCC-CCCCCC-CC-CcCCceeeecCCCCccc
Q 048627 418 NPKTFTKMCKLRFLKFYSSSFNG-ENKCKVSYLQDPAFAEVKYFHWHGYP-LKSLPS-NL-SAEKLVFLEVPDNNIEQ 491 (689)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~L~~l~~~~~~-~~~lp~-~~-~~~~L~~L~l~~~~i~~ 491 (689)
.+..|..+++|++|++++|.+.+ ..|..++.++ +|+.|++.++. +..+|. .+ .+++|++|++++|.+..
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccC-----CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 34445555555555555555543 2333344443 55555555554 444543 23 55566666666665553
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=206.04 Aligned_cols=260 Identities=17% Similarity=0.142 Sum_probs=211.4
Q ss_pred cChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCccc
Q 048627 417 LNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCV 496 (689)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~ 496 (689)
..+..+..+++|+.|++++|.+.+ +|..+..+ +|+.+.+.++.+..+|. ..+++|+.|++.+|.+......
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~------~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF------GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC------CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hchhhhcCcCcccEEEecCccchh-hhhhhccC------CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-
Confidence 345678889999999999988764 45444332 78889999999998887 4678999999999987755443
Q ss_pred ccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcC
Q 048627 497 KHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSG 573 (689)
Q Consensus 497 ~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~ 573 (689)
..+++|++|+++++..- .....+..+.++++|++|++++|.. ..+|..+..+++|++|++++|......|.. ...
T Consensus 344 ~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCB-EEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccC-ccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 67899999999886522 1111123566789999999999984 445555889999999999998765544422 347
Q ss_pred CCcEEEcccccccc-cCcccccCCCCCEEecCCCCCC-CCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 574 NISWLLLRGSAIEE-LPSSIERQLRLSWLDLTDCKMF-KSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 574 ~L~~L~l~~~~l~~-l~~~i~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
+|++|++++|.+.. .|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|...+..|..++.+++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 89999999999885 5667899999999999999986 578999999999999999999988888999999999999999
Q ss_pred cCCCCccccc-hhhccCCCcEEecCCCCCCCCCCCCC
Q 048627 652 AETNIERIPK-SIIQLFMLRYLLLNCSEGHESIPKRP 687 (689)
Q Consensus 652 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~ 687 (689)
++|+++.+|. .+.++++|+.|++++|++.+..|..+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999997764 57899999999999999999998764
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=3.4e-19 Score=195.46 Aligned_cols=243 Identities=21% Similarity=0.205 Sum_probs=177.3
Q ss_pred eeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCcee
Q 048627 402 IEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVF 481 (689)
Q Consensus 402 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~ 481 (689)
++.+.+....... + |..+. ++|+.|++++|.+.. +|. .+ .+|++|++++|.++.+|. .+++|++
T Consensus 42 l~~L~ls~n~L~~--l-p~~l~--~~L~~L~L~~N~l~~-lp~---~l-----~~L~~L~Ls~N~l~~lp~--~l~~L~~ 105 (622)
T 3g06_A 42 NAVLNVGESGLTT--L-PDCLP--AHITTLVIPDNNLTS-LPA---LP-----PELRTLEVSGNQLTSLPV--LPPGLLE 105 (622)
T ss_dssp CCEEECCSSCCSC--C-CSCCC--TTCSEEEECSCCCSC-CCC---CC-----TTCCEEEECSCCCSCCCC--CCTTCCE
T ss_pred CcEEEecCCCcCc--c-ChhhC--CCCcEEEecCCCCCC-CCC---cC-----CCCCEEEcCCCcCCcCCC--CCCCCCE
Confidence 5556655544332 2 22222 789999999998874 343 22 588999999999999998 6789999
Q ss_pred eecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccC---C----------
Q 048627 482 LEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEI---F---------- 548 (689)
Q Consensus 482 L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l---~---------- 548 (689)
|++++|.++.+|. .+.+|+.|+++++. + ..+|. .+++|++|++++|.+ ..+|..+ .
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l-~~lp~-----~l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLWIFGNQ-L-TSLPV-----LPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEECCSSC-C-SCCCC-----CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCS
T ss_pred EECcCCcCCCCCC---CCCCcCEEECCCCC-C-CcCCC-----CCCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCC
Confidence 9999999988877 56777888887654 3 33432 247778888887763 3344322 1
Q ss_pred ----CCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccE
Q 048627 549 ----NLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGV 624 (689)
Q Consensus 549 ----~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 624 (689)
.+++|+.|++++|. +..+|... .+|+.|++++|.++.+|.. +++|+.|++++|.+ ..+| ..+++|+.
T Consensus 175 ~l~~~~~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L-~~lp---~~l~~L~~ 245 (622)
T 3g06_A 175 SLPMLPSGLQELSVSDNQ-LASLPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRL-TSLP---VLPSELKE 245 (622)
T ss_dssp CCCCCCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCC---CCCTTCCE
T ss_pred CCcccCCCCcEEECCCCC-CCCCCCcc-chhhEEECcCCcccccCCC---CCCCCEEEccCCcc-CcCC---CCCCcCcE
Confidence 12666777777665 34455433 6677777777777776653 47899999999987 4577 45789999
Q ss_pred EEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCC
Q 048627 625 LDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 625 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
|++++|... .+|. .+++|+.|++++|.++.+|..+.++++|+.|++++|++.+.+|
T Consensus 246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred EECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 999998654 6776 5789999999999999999999999999999999999987554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.2e-19 Score=181.50 Aligned_cols=200 Identities=21% Similarity=0.247 Sum_probs=163.7
Q ss_pred cceeEEEecCCCCCCCCCC-C-CcCCceeeecCCCCcccc-CcccccCccchhhccccCccccccCCCCCCCCCCCcccE
Q 048627 455 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLEVPDNNIEQL-GDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVF 531 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~-~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~ 531 (689)
.+++.|.+.++.+..+|.. + .+++|++|++++|.+..+ +..+..+++|++|+++++..+ ..++ +..+.++++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l-~~~~-~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-RSVD-PATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-CCCC-TTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-cccC-HHHhcCCcCCCE
Confidence 4778888888888877753 4 678899999998888877 567888889999998887544 3332 346788899999
Q ss_pred EeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCC
Q 048627 532 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCK 607 (689)
Q Consensus 532 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~ 607 (689)
|++++|.+.+..|..+..+++|++|++++|... .+|.. ...+|+.|++++|.++.+|. .+..+++|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999999877666777888999999999998754 44432 24688999999999998876 48889999999999999
Q ss_pred CCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 608 MFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 608 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
+.+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|++.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 97777999999999999999998877655567899999999999999876
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.7e-19 Score=191.49 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=187.4
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCcc-cccCccc
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGDC-VKHYSKL 502 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L 502 (689)
++++.|++++|.+.+..|..+..++ +|++|++.++.+..++. .+ .+.+|++|++++|.++.++.. +..+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-----HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCC-----CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 5789999999998887677777776 88999999999888874 44 789999999999999988765 7889999
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCc-cCCCCCCCCEEeccCCCCCCCCCCCC-cCCCcEEEc
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLLL 580 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l 580 (689)
++|+++++. + ..++ ...+.++++|++|++++|..++.+|. .+..+++|++|++++|. +..+|... ..+|+.|++
T Consensus 150 ~~L~L~~N~-l-~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 150 RELWLRNNP-I-ESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CEEECCSCC-C-CEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEEC
T ss_pred CEEECCCCC-c-ceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEEC
Confidence 999999865 3 3343 34678899999999999887888876 47889999999999987 44556533 368999999
Q ss_pred cccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 581 RGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 581 ~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++|.+..+ |..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|...+..+..+..+++|+.|++++|++.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999977 667999999999999999998888888999999999999999877666667888999999999998754
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=7.6e-20 Score=185.11 Aligned_cols=242 Identities=18% Similarity=0.194 Sum_probs=197.4
Q ss_pred ceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCcccc---CcccccCccch
Q 048627 429 RFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQL---GDCVKHYSKLN 503 (689)
Q Consensus 429 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~ 503 (689)
+.++++++.+... |. .++ .+++.|++.++.++.+|..+ .+++|++|++++|.+... +..+..+++|+
T Consensus 10 ~~l~c~~~~l~~i-p~---~~~----~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PT---GIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSC-CS---CCC----TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccC-CC---CCC----CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 4667776655442 32 222 58999999999999999864 889999999999999855 45667789999
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEc
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLL 580 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l 580 (689)
+|+++++. + ..++ ..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|......|... ..+|+.|++
T Consensus 82 ~L~Ls~n~-i-~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 82 YLDLSFNG-V-ITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp EEECCSCS-E-EEEE--EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred EEECCCCc-c-ccCh--hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 99999875 3 3333 357789999999999998544333 468899999999999998655555432 378999999
Q ss_pred ccccccc--cCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-
Q 048627 581 RGSAIEE--LPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE- 657 (689)
Q Consensus 581 ~~~~l~~--l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~- 657 (689)
++|.+.. +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..+..+..+++|+.|++++|.++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 9999985 7889999999999999999997777889999999999999999887766667889999999999999998
Q ss_pred cccchhhccC-CCcEEecCCCCCCCC
Q 048627 658 RIPKSIIQLF-MLRYLLLNCSEGHES 682 (689)
Q Consensus 658 ~lp~~~~~l~-~L~~L~l~~~~~l~~ 682 (689)
..|..+..++ +|+.|++++|++...
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCHHHHHhhhccCCEEEccCCCeecc
Confidence 4566778885 899999999998764
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.8e-21 Score=196.39 Aligned_cols=240 Identities=11% Similarity=0.026 Sum_probs=182.9
Q ss_pred hhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccC
Q 048627 420 KTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHY 499 (689)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l 499 (689)
..+..+++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+++...+++|++|++++|.++.++ ..
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFT-----KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-----TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----EC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCC-----cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CC
Confidence 4455677899999999988887666677775 78888888888877766447888999999999887664 34
Q ss_pred ccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCc
Q 048627 500 SKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNIS 576 (689)
Q Consensus 500 ~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~ 576 (689)
++|++|+++++. + ..++ ...+++|++|++++|.+.+..|..++.+++|++|++++|......|... ..+|+
T Consensus 99 ~~L~~L~l~~n~-l-~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNN-I-SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSC-C-SEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCc-c-CCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 788888888764 2 2222 1236778999999888666666677888899999999887554333322 36788
Q ss_pred EEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 577 WLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 577 ~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
.|++++|.++.++.. ..+++|++|++++|.+ ..+|..+..+++|++|++++|... .+|..+..+++|+.|++++|.+
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 999999888887553 3588899999999887 456666888899999999987654 6788888888999999999988
Q ss_pred c--cccchhhccCCCcEEecCCC
Q 048627 657 E--RIPKSIIQLFMLRYLLLNCS 677 (689)
Q Consensus 657 ~--~lp~~~~~l~~L~~L~l~~~ 677 (689)
. .+|.++..+++|+.|++.+|
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcCHHHHHhccccceEEECCCc
Confidence 7 67777888888888877744
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=8.6e-19 Score=198.11 Aligned_cols=272 Identities=21% Similarity=0.228 Sum_probs=175.1
Q ss_pred eeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCC------CCCC---
Q 048627 402 IEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLK------SLPS--- 472 (689)
Q Consensus 402 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~------~lp~--- 472 (689)
++.+.+..+.. ..+.+..|..+++|+.|++++|.+.+..|..+..++ +|+.+.+.++... .+|.
T Consensus 250 L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 250 LTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-----NVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp CCEEECTTSCC--CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT-----TCCEEECTTCBCCC------CCEECT
T ss_pred CCEEECCCCCc--CccCcccccCcccccEeeCCCCccCccChhhhcCCC-----CccEEeccchhhhcccccccccccCh
Confidence 44555444332 233456677788888888888777766665666655 5555555543221 2332
Q ss_pred -CC-CcCCceeeecCCCCccccCc-ccccCccchhhccccCcc---------------------------ccccCCCCCC
Q 048627 473 -NL-SAEKLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNK---------------------------LIAKTPNPTL 522 (689)
Q Consensus 473 -~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~---------------------------l~~~~~~~~~ 522 (689)
.+ .+++|++|++++|.+..++. .+..+++|++|+++++.. + ..+ .+..
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l-~~~-~~~~ 400 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-SKI-ESDA 400 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC-CEE-CTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC-CeE-Chhh
Confidence 22 45666666666666655432 355556666665554320 1 111 1234
Q ss_pred CCCCCcccEEeccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCC--CcCCCcEEEccccccc---ccCcccccCC
Q 048627 523 MPRLNKLVFLNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLLLRGSAIE---ELPSSIERQL 596 (689)
Q Consensus 523 ~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~---~l~~~i~~l~ 596 (689)
+.++++|+.|++++|.+.+.+| ..+..+++|++|++++|......+.. ...+|+.|++++|.+. .+|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 5566777777777776555554 35666777777777776532222211 1256777888777664 5677788899
Q ss_pred CCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCcc----C----cccCCCCCCCEEEccCCCCccccch-hhccC
Q 048627 597 RLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRL----P----ECLGQLSSPILLNLAETNIERIPKS-IIQLF 667 (689)
Q Consensus 597 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~----p----~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~ 667 (689)
+|+.|++++|.+.+..|..+..+++|++|++++|...+.. | ..++.+++|+.|++++|.++.+|.. +.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 9999999999886666667888999999999998765431 1 2367889999999999999988864 78899
Q ss_pred CCcEEecCCCCCCCC
Q 048627 668 MLRYLLLNCSEGHES 682 (689)
Q Consensus 668 ~L~~L~l~~~~~l~~ 682 (689)
+|+.|++++|.+.+-
T Consensus 561 ~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTL 575 (680)
T ss_dssp TCCEEECCSSCCCCC
T ss_pred CcceeECCCCCCCcC
Confidence 999999999988753
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=189.43 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=182.0
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCCceeeecCCCCccccCc-ccccCccc
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLEVPDNNIEQLGD-CVKHYSKL 502 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L 502 (689)
.+++.|++++|.+.+..+..+..++ +|++|++.++.+..++.. + .+.+|++|++++|.++.++. .+..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR-----HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS-----SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC-----CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 5788899998888776666677665 788888888888887743 4 68889999999999888866 47888899
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCc-cCCCCCCCCEEeccCCCCCCCCCCCC-cCCCcEEEc
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLLL 580 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l 580 (689)
++|+++++. + ..++ ...+.++++|++|++++|..++.++. .+..+++|++|++++|. +..+|... ..+|+.|++
T Consensus 139 ~~L~L~~N~-i-~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 139 KELWLRNNP-I-ESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDL 214 (440)
T ss_dssp CEEECCSCC-C-CEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEEC
T ss_pred ceeeCCCCc-c-cccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEEC
Confidence 999988764 3 3333 34678889999999998877777765 57789999999999986 45666543 368899999
Q ss_pred cccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 581 RGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 581 ~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++|.+..+ |..+..+++|+.|++++|.+....+..+..+++|+.|+|++|...+..+..+..+++|+.|++++|++.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999877 667899999999999999998777888999999999999998877666667888999999999998754
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.2e-20 Score=200.87 Aligned_cols=233 Identities=12% Similarity=0.016 Sum_probs=176.1
Q ss_pred CCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchh
Q 048627 425 MCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNR 504 (689)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 504 (689)
+++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+++...+++|++|++++|.+..++. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-----KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-----TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-----CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 34899999999988887677777776 888899998888776664478899999999998886653 377888
Q ss_pred hccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcc
Q 048627 505 IIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLR 581 (689)
Q Consensus 505 l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~ 581 (689)
|+++++..- .++ ...+++|+.|++++|.+.+..|..++.+++|++|++++|......|... +.+|+.|+++
T Consensus 104 L~L~~N~l~--~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNIS--RVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCCC--CEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcCC--CCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 888876422 222 1245788899999888777777778888889999998887655444432 3678888888
Q ss_pred cccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc--cc
Q 048627 582 GSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE--RI 659 (689)
Q Consensus 582 ~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~--~l 659 (689)
+|.++.+|. ...+++|++|++++|.+. .+|..++.+++|+.|++++|... .+|..++.+++|+.|++++|.+. .+
T Consensus 178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 178 YNFIYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp TSCCCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCccccccc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcch
Confidence 888887754 335888888888888874 45556788888888888887655 47777888888888888888887 67
Q ss_pred cchhhccCCCcEEecC
Q 048627 660 PKSIIQLFMLRYLLLN 675 (689)
Q Consensus 660 p~~~~~l~~L~~L~l~ 675 (689)
|.++..++.|+.+++.
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 7777777777777664
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3e-18 Score=182.37 Aligned_cols=229 Identities=19% Similarity=0.206 Sum_probs=123.0
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCcc
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
|..+++|++|++++|.+.+ +|..+ .+|++|++.+|.+..+|....+++|++|++++|.+..+|... .+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~--------~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP--------PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LS 216 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC--------TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TT
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc--------ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---Cc
Confidence 6666667777776666554 23211 256666777777666664336677777777777766655433 35
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
|++|+++++. + ..+| .++++++|++|++++|.+ ..+|. .+++|++|++++|. +..+|... .+|+.|+++
T Consensus 217 L~~L~l~~n~-l-~~lp---~~~~l~~L~~L~l~~N~l-~~l~~---~~~~L~~L~l~~N~-l~~l~~~~-~~L~~L~ls 285 (454)
T 1jl5_A 217 LESIVAGNNI-L-EELP---ELQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNY-LTDLPELP-QSLTFLDVS 285 (454)
T ss_dssp CCEEECCSSC-C-SSCC---CCTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECC
T ss_pred ccEEECcCCc-C-Cccc---ccCCCCCCCEEECCCCcC-Ccccc---cccccCEEECCCCc-ccccCccc-CcCCEEECc
Confidence 6666666653 3 2333 366677777777777763 34554 23667777777765 33355433 566777777
Q ss_pred cccccccCcc---cc-------------cC-CCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCC
Q 048627 582 GSAIEELPSS---IE-------------RQ-LRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLS 644 (689)
Q Consensus 582 ~~~l~~l~~~---i~-------------~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 644 (689)
+|.+..+|.. +. .+ ++|++|++++|.+. .+|.. +++|++|++++|... .+|. .++
T Consensus 286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCccc-cccc---hhh
Confidence 6666654321 11 11 35555555555543 24433 456666666665443 4554 356
Q ss_pred CCCEEEccCCCCcc---ccchhhcc-------------CCCcEEecCCCCCCC
Q 048627 645 SPILLNLAETNIER---IPKSIIQL-------------FMLRYLLLNCSEGHE 681 (689)
Q Consensus 645 ~L~~L~l~~~~l~~---lp~~~~~l-------------~~L~~L~l~~~~~l~ 681 (689)
+|+.|++++|.++. +|.++.++ ++|+.|++++|++.+
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 66777776666653 45555555 566777777766666
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=4e-19 Score=176.88 Aligned_cols=221 Identities=19% Similarity=0.144 Sum_probs=160.1
Q ss_pred EecCCCCCCCCCCCCcCCceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCC
Q 048627 461 HWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKS 539 (689)
Q Consensus 461 ~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 539 (689)
...+..+..+|..+. .+|++|++++|.++.++. .+..+++|++|+++++. + ..++ ...+.++++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l-~~~~-~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-I-QTIE-DGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-C-CEEC-TTTTTTCTTCCEEECTTCCC
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-C-CccC-HHHccCCcCCCEEECCCCcc
Confidence 334445556666442 467777777777776655 56777777777777763 3 2222 23567788888888888886
Q ss_pred CcccCccCCCCCCCCEEeccCCCCCCCCC--CCCcCCCcEEEcccccccc--cCcccccCCCCCEEecCCCCCCCCCCcc
Q 048627 540 LKSLPSEIFNLEFLTKLDLSGCSKLKRLP--EISSGNISWLLLRGSAIEE--LPSSIERQLRLSWLDLTDCKMFKSLPSS 615 (689)
Q Consensus 540 ~~~~p~~l~~l~~L~~L~l~~~~~l~~~p--~~~~~~L~~L~l~~~~l~~--l~~~i~~l~~L~~L~l~~~~~~~~lp~~ 615 (689)
.+..|..+..+++|++|++++|......+ .....+|+.|++++|.+.. +|..+..+++|++|++++|.+.+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 66666678888888888888877443222 1223678888888888876 6888999999999999999886655566
Q ss_pred cCCCCCcc----EEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccch-hhccCCCcEEecCCCCCCCCCCCC
Q 048627 616 LCKLKSLG----VLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKS-IIQLFMLRYLLLNCSEGHESIPKR 686 (689)
Q Consensus 616 ~~~l~~L~----~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~ 686 (689)
+..+++|+ .|++++|...+..+ ......+|+.|++++|.++.+|.. +.++++|+.|++++|++....|.+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred hhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 66666666 88999877654444 333445899999999999988865 478999999999999998877765
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=7.3e-21 Score=192.88 Aligned_cols=198 Identities=19% Similarity=0.161 Sum_probs=148.2
Q ss_pred cCCceeeecCCCCcc-ccCccc--ccCccchhhccccCccccccCCCCCCCCCC-----CcccEEeccCCCCCcccCccC
Q 048627 476 AEKLVFLEVPDNNIE-QLGDCV--KHYSKLNRIIHAACNKLIAKTPNPTLMPRL-----NKLVFLNLRGSKSLKSLPSEI 547 (689)
Q Consensus 476 ~~~L~~L~l~~~~i~-~l~~~~--~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~p~~l 547 (689)
+.+|++|++++|.+. .+|..+ ..+++|++|+++++. + ...| ..+..+ ++|++|++++|.+.+..|..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l-~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-W-ATRD--AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-C-SSSS--SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-C-cchh--HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 566777777777766 455544 667777777777653 2 1222 334444 788888888888666666778
Q ss_pred CCCCCCCEEeccCCCCCCCC--CC----CCcCCCcEEEcccccccccC---cc-cccCCCCCEEecCCCCCCCCCC-ccc
Q 048627 548 FNLEFLTKLDLSGCSKLKRL--PE----ISSGNISWLLLRGSAIEELP---SS-IERQLRLSWLDLTDCKMFKSLP-SSL 616 (689)
Q Consensus 548 ~~l~~L~~L~l~~~~~l~~~--p~----~~~~~L~~L~l~~~~l~~l~---~~-i~~l~~L~~L~l~~~~~~~~lp-~~~ 616 (689)
+.+++|++|++++|...+.. |. ....+|++|++++|.++.++ .. +..+++|++|++++|.+.+..| ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 88888888888888754431 11 23367888888888888443 32 3578999999999999877665 456
Q ss_pred CCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 617 CKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 617 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
..+++|++|++++|... .+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++.+
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 67899999999998765 8888776 899999999999998887 8899999999999999875
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=185.80 Aligned_cols=246 Identities=17% Similarity=0.196 Sum_probs=201.8
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCC
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEK 478 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~ 478 (689)
.++.+.+...... .+++..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.++.+|.. + .+++
T Consensus 53 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 53 AVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-----SLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred cCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-----CCCEEECCCCcCCcCCHhHhCCCcc
Confidence 5666666655443 34566799999999999999998887666777776 899999999999999986 4 7899
Q ss_pred ceeeecCCCCccccCc--ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEE
Q 048627 479 LVFLEVPDNNIEQLGD--CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKL 556 (689)
Q Consensus 479 L~~L~l~~~~i~~l~~--~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 556 (689)
|++|++++|.+..++. .+..+++|++|+++++..+ ..++ +..+.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-TKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-cccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 9999999999999887 6889999999999998655 3333 3468889999999999999877778899999999999
Q ss_pred eccCCCCCCCCCCCC---cCCCcEEEcccccccccCcc----cccCCCCCEEecCCCCCCC----CCCcccCCCCCccEE
Q 048627 557 DLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPSS----IERQLRLSWLDLTDCKMFK----SLPSSLCKLKSLGVL 625 (689)
Q Consensus 557 ~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~----i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L 625 (689)
++++|.. ..+|... ..+|+.|++++|.++.++.. ......++.++++++.+.+ .+|..+..+++|+.|
T Consensus 204 ~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 204 ILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 9999884 5555432 37899999999998865422 3456788999999988754 478888999999999
Q ss_pred EeecCCCCCccCcc-cCCCCCCCEEEccCCCCc
Q 048627 626 DLHGCSNLRRLPEC-LGQLSSPILLNLAETNIE 657 (689)
Q Consensus 626 ~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~l~ 657 (689)
++++|... .+|.. ++.+++|+.|++++|++.
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 99998765 77766 488999999999999987
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=6e-18 Score=169.00 Aligned_cols=192 Identities=22% Similarity=0.234 Sum_probs=106.5
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccEEec
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNL 534 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 534 (689)
+++.+++.++.++.+|..+. .++++|++++|.+..++ ..+..+++|++|+++++. + ..++ ....+++|++|++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l-~~~~---~~~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-L-TKLQ---VDGTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-C-CEEE---CCSCCTTCCEEEC
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-c-Cccc---CCCCCCcCCEEEC
Confidence 55666666666667776553 57788888888777653 346666666666666643 2 2222 1256677777777
Q ss_pred cCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCC
Q 048627 535 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFK 610 (689)
Q Consensus 535 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~ 610 (689)
++|. +..+|..+..+++|++|++++|.. +.+|.. ...+|+.|++++|.+..+|.. +..+++|+.|++++|.+..
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 7766 446666666777777777776653 233321 123445555555555544433 3445555555555555432
Q ss_pred CCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 611 SLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 611 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
..+..+..+++|++|++++|... .+|..+..+.+|+.|++.+|++
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 22223344555555555554332 4454444455555555555543
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3e-19 Score=177.07 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=109.0
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
+++.+.+.++.+..++....+++|++|++++|.+..++ . +.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~---------------------------l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A---------------------------LKELTNLTYLILT 93 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G---------------------------GTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h---------------------------hcCCCCCCEEECC
Confidence 55566666666555554335556666666655554431 3 3444555555555
Q ss_pred CCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCC
Q 048627 536 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKS 611 (689)
Q Consensus 536 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~ 611 (689)
+|.+.+..+..++.+++|++|++++|... .+|.. ...+|++|++++|.++.+|.. +..+++|++|++++|.+.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 55433333333445555555555555432 22221 123455555555555555443 45667777777777766544
Q ss_pred CCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCC
Q 048627 612 LPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPK 685 (689)
Q Consensus 612 lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 685 (689)
.+..++.+++|++|++++|...+..|..++.+++|+.|++++|.+. +.+++|+.|++..|.+.|.+|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 4445566777777777776666555555666777777777776544 2345666666666666666664
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=5.6e-20 Score=186.79 Aligned_cols=236 Identities=13% Similarity=0.132 Sum_probs=192.2
Q ss_pred cceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCc
Q 048627 400 EKIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKL 479 (689)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L 479 (689)
..++.+.+..... ..+.+..|..+++|+.|++++|.+.+..+ +..++ +|++|++.+|.+..+|. .++|
T Consensus 34 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-----~L~~L~Ls~n~l~~l~~---~~~L 101 (317)
T 3o53_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-----TLRTLDLNNNYVQELLV---GPSI 101 (317)
T ss_dssp GGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-----TCCEEECCSSEEEEEEE---CTTC
T ss_pred CCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-----CCCEEECcCCccccccC---CCCc
Confidence 3566677665543 33567889999999999999999876533 55554 89999999998887774 3799
Q ss_pred eeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCC-CCCCCCEEec
Q 048627 480 VFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIF-NLEFLTKLDL 558 (689)
Q Consensus 480 ~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l 558 (689)
++|++++|.+..++.. .+++|++|+++++. + ..++ +..+.++++|++|++++|.+.+..|..+. .+++|++|++
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNK-I-TMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSC-C-CSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCC-C-CCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 9999999999877544 47889999999875 2 2222 34677899999999999997776666663 7899999999
Q ss_pred cCCCCCCCCCC-CCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC-Ccc
Q 048627 559 SGCSKLKRLPE-ISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL-RRL 636 (689)
Q Consensus 559 ~~~~~l~~~p~-~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~ 636 (689)
++|... .+|. ....+|+.|++++|.++.+|..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|... +.+
T Consensus 177 ~~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 177 QYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTSCCC-EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CCCcCc-ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCcCH
Confidence 999844 3343 335889999999999999999999999999999999998 578989999999999999999988 778
Q ss_pred CcccCCCCCCCEEEccCC
Q 048627 637 PECLGQLSSPILLNLAET 654 (689)
Q Consensus 637 p~~l~~l~~L~~L~l~~~ 654 (689)
|..++.+++|+.|++.++
T Consensus 255 ~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHhccccceEEECCCc
Confidence 888889999999998854
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.9e-17 Score=162.67 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=104.5
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGS 537 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 537 (689)
.+++.++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|+++++. + ..++ ...+.++++|++|++++|
T Consensus 20 ~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l-~~i~-~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-L-QTLP-AGIFKELKNLETLWVTDN 95 (270)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-C-SCCC-TTTTSSCTTCCEEECCSS
T ss_pred EEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-c-CeeC-hhhhcCCCCCCEEECCCC
Confidence 34444444444444332 345555555555554433 34444455555444432 2 1222 123455666666666666
Q ss_pred CCCcccCccCCCCCCCCEEeccCCCCCCCCCCC--CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCc
Q 048627 538 KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPS 614 (689)
Q Consensus 538 ~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~ 614 (689)
.+....+..+..+++|++|++++|......|.. ...+|++|++++|.+..+|.. +..+++|++|++++|.+....+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 643333334456666666666665532222211 124555555555656655543 56677777777777776444444
Q ss_pred ccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 615 SLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 615 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5667777777777776555444445666777777777776654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.2e-18 Score=185.31 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=175.4
Q ss_pred cceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEE
Q 048627 455 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFL 532 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L 532 (689)
.+|++|+++++.+..+|+ .+ .+++|++|++++|.+...++ +..+++|++|+++++. + ..+ ...++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l-~~l------~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-V-QEL------LVGPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-E-EEE------EECTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-C-CCC------CCCCCcCEE
Confidence 489999999999999875 45 88999999999999987665 8899999999999874 3 223 234899999
Q ss_pred eccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccc-cCcccc-cCCCCCEEecCCCCC
Q 048627 533 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEE-LPSSIE-RQLRLSWLDLTDCKM 608 (689)
Q Consensus 533 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~-l~~~i~-~l~~L~~L~l~~~~~ 608 (689)
++++|.+.+..+. .+++|++|++++|......|... +.+|+.|++++|.+.. .|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999996555443 57899999999998665545432 4789999999999986 455665 799999999999998
Q ss_pred CCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCC
Q 048627 609 FKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 609 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l 680 (689)
.+. |. ...+++|+.|+|++|...+ +|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 544 43 4569999999999987665 666688999999999999999999999999999999999999987
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.3e-17 Score=187.06 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCcEEEccccccccc-CcccccCCCCCEEecCCCCCCC-CCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 574 NISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFK-SLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 574 ~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
+++.++++.|.+..+ +..+..+++|+.|++++|.... ..|..+..+++|++|+|++|...+..|..++++++|+.|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 344555555544432 2334455566666666655332 34555666666666666666555555556666666666666
Q ss_pred cCCCCccccc-hhhccCCCcEEecCCCCCCCCCC
Q 048627 652 AETNIERIPK-SIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 652 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
++|+++.++. .+.++++|+.|++++|++.+..|
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 6666665443 35556666666666666655544
No 72
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.75 E-value=1.3e-17 Score=172.34 Aligned_cols=290 Identities=13% Similarity=0.109 Sum_probs=173.3
Q ss_pred ccccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchh--cCCCCh
Q 048627 56 FQLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVES--QRPGGL 133 (689)
Q Consensus 56 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 133 (689)
+.++..+..|+||++++++|.+++.. + +++.|+|++|+|||||+++++++.. .+|+.. .... ......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~---~-~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLEN---Y-PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHH---C-SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhc---C-CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCH
Confidence 45566778899999999999999853 2 6899999999999999999998752 555552 2221 001233
Q ss_pred HHHHHHHHHHhcC----------------CCCC--Ccc----hHHHHHhhcC-CcEEEEEcCCCChH--------HHHHH
Q 048627 134 AWLRQKLLLNLLK----------------DENV--IPD----IDLNFRRLSR-IKILIVFDDVTCFT--------QLESL 182 (689)
Q Consensus 134 ~~l~~~~l~~~~~----------------~~~~--~~~----~~~l~~~l~~-~~~LlVlDdv~~~~--------~~~~l 182 (689)
..+...+...+.. ...+ ... ...+.+.... ++++|||||++... .+..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 4444444433221 0000 112 2223333322 48999999996632 22222
Q ss_pred hcCCCCCCCCceEEeeccchhhhhh-----------c-CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHH
Q 048627 183 IGSLDWLTPVSRIIITTRNKQVLRN-----------W-EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVM 250 (689)
Q Consensus 183 ~~~l~~~~~g~~iliTtR~~~~~~~-----------~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~ 250 (689)
+..+....++.++|+|++....... . .....+.+.+|+.+|+.+++...+...... ...+.+..++
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 2211111257789999887543211 1 112589999999999999998754221111 1245678999
Q ss_pred HHhCCCchhHHHhhhhhcC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhcCC---CHHHHHHhhhcccccCCcCHHHHHH
Q 048627 251 KYAQGVPLALKVLGCFLYK-REKEVWESAINKLQRILHPSIREVLKISYDGL---DDKEKNIFLDVACFFRGEGVNLVMK 326 (689)
Q Consensus 251 ~~~~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L---~~~~~~~~~~la~f~~~~~~~~l~~ 326 (689)
+.++|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ ...+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999998875432 2222221 1111 11111122222223 7888999998887 3356666665
Q ss_pred HHHhc--CCC---chhchhHHhhcCceEEccCCeEE-ecHHHHHHHH
Q 048627 327 FFDAS--GFY---PEIGINVLVDKSLIAIDSYNKIT-MHDLLQELGR 367 (689)
Q Consensus 327 l~~~~--~~~---~~~~l~~L~~~~li~~~~~~~~~-~H~lv~~~a~ 367 (689)
..... +.. ...+++.|.+.+++... ++.|. .|++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 54221 222 34568999999999876 35555 5888888764
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=8.1e-17 Score=176.63 Aligned_cols=230 Identities=23% Similarity=0.239 Sum_probs=164.7
Q ss_pred ceeeEEeccCcccccccChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCce
Q 048627 401 KIEGICLDMSKAKDIHLNPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLV 480 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~ 480 (689)
.++.+.+..+.... +++ .+++|++|++++|.+.+ +|. .+ .+|++|++.+|.+..+|. .+.+|+
T Consensus 62 ~L~~L~L~~N~l~~--lp~----~l~~L~~L~Ls~N~l~~-lp~---~l-----~~L~~L~Ls~N~l~~l~~--~l~~L~ 124 (622)
T 3g06_A 62 HITTLVIPDNNLTS--LPA----LPPELRTLEVSGNQLTS-LPV---LP-----PGLLELSIFSNPLTHLPA--LPSGLC 124 (622)
T ss_dssp TCSEEEECSCCCSC--CCC----CCTTCCEEEECSCCCSC-CCC---CC-----TTCCEEEECSCCCCCCCC--CCTTCC
T ss_pred CCcEEEecCCCCCC--CCC----cCCCCCEEEcCCCcCCc-CCC---CC-----CCCCEEECcCCcCCCCCC--CCCCcC
Confidence 45566665554432 222 46788888888887664 333 22 467777777777777776 456677
Q ss_pred eeecCCCCccccCcccccCccchhhccccCccccccCC-CCCCCC--------------CCCcccEEeccCCCCCcccCc
Q 048627 481 FLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTP-NPTLMP--------------RLNKLVFLNLRGSKSLKSLPS 545 (689)
Q Consensus 481 ~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~-~~~~~~--------------~l~~L~~L~l~~~~~~~~~p~ 545 (689)
.|++++|.++.+|.. +++|++|+++++. + ..+| .+..+. .+++|+.|++++|. +..+|.
T Consensus 125 ~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l-~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~ 198 (622)
T 3g06_A 125 KLWIFGNQLTSLPVL---PPGLQELSVSDNQ-L-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPT 198 (622)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSSC-C-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC
T ss_pred EEECCCCCCCcCCCC---CCCCCEEECcCCc-C-CCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCC
Confidence 777777777666654 3556666666553 2 2221 112222 23889999999988 455665
Q ss_pred cCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEE
Q 048627 546 EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVL 625 (689)
Q Consensus 546 ~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 625 (689)
.+++|+.|++++|. +..+|... .+|+.|++++|.++.+| ..+++|+.|++++|.+ ..+|. .+++|+.|
T Consensus 199 ---~~~~L~~L~L~~N~-l~~l~~~~-~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L-~~lp~---~~~~L~~L 266 (622)
T 3g06_A 199 ---LPSELYKLWAYNNR-LTSLPALP-SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRL-TSLPM---LPSGLLSL 266 (622)
T ss_dssp ---CCTTCCEEECCSSC-CSSCCCCC-TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC---CCTTCCEE
T ss_pred ---ccchhhEEECcCCc-ccccCCCC-CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCC-CcCCc---ccccCcEE
Confidence 35889999999987 55677654 88999999999999988 4568999999999987 57776 67899999
Q ss_pred EeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhcc
Q 048627 626 DLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQL 666 (689)
Q Consensus 626 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l 666 (689)
++++|... .+|..+..+++|+.|++++|+++ ..|..+..+
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 99998765 88999999999999999999998 455555443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.5e-17 Score=167.81 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=111.5
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
+|+.|.+.++.+..+|....+++|++|++++|.+..++. +..+++|++|+++++. + ..+ ..+.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l-~~~---~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-L-KNV---SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-C-SCC---GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-C-CCc---hhhcCCCCCCEEECC
Confidence 444444444444444432245556666666665555544 5555555555555543 2 111 245566777777777
Q ss_pred CCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcc
Q 048627 536 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSS 615 (689)
Q Consensus 536 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~ 615 (689)
+|.+ ..+|. +..+++|++|++++|......+-....+|+.|++++|.+..++. +..+++|+.|++++|.+. .++.
T Consensus 116 ~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~- 190 (308)
T 1h6u_A 116 STQI-TDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-DISP- 190 (308)
T ss_dssp TSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-
T ss_pred CCCC-CCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-cChh-
Confidence 7763 33443 66777777777777653322221223456666666666666555 667777777777777763 3333
Q ss_pred cCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccc
Q 048627 616 LCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPK 661 (689)
Q Consensus 616 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~ 661 (689)
+..+++|++|++++|...+.. .+..+++|+.|++++|.++..|.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 666777777777776554433 26667777777777777665553
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.8e-17 Score=161.91 Aligned_cols=182 Identities=21% Similarity=0.271 Sum_probs=145.9
Q ss_pred cCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCC
Q 048627 498 HYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGN 574 (689)
Q Consensus 498 ~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~ 574 (689)
.+.+|+.|.+.++. + ..+..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|... .+|.. ...+
T Consensus 39 ~l~~L~~L~l~~~~-i----~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-I----KSVQGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSC-C----CCCTTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTT
T ss_pred cccceeeeeeCCCC-c----ccccccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-ccChhHhcCCcC
Confidence 44455555555432 1 122356778899999999998544 44 6889999999999999754 44442 2478
Q ss_pred CcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccC
Q 048627 575 ISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAE 653 (689)
Q Consensus 575 L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 653 (689)
|++|++++|.+..++.. +..+++|++|++++|.+.+..+..++.+++|++|++++|...+..+..++.+++|+.|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999988765 78999999999999998666666678999999999999987766666788999999999999
Q ss_pred CCCccccch-hhccCCCcEEecCCCCCCCCCCCCC
Q 048627 654 TNIERIPKS-IIQLFMLRYLLLNCSEGHESIPKRP 687 (689)
Q Consensus 654 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~ 687 (689)
|.++.+|.. +..+++|+.|++++|++.+..|.+.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 225 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 225 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCccccCcHHH
Confidence 999977754 6889999999999999999988753
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=168.22 Aligned_cols=201 Identities=18% Similarity=0.089 Sum_probs=152.4
Q ss_pred cCCceeeecCCCCcccc-Cccc--ccCccchhhccccCccccccCCCC--CCCCCCCcccEEeccCCCCCcccCccCCCC
Q 048627 476 AEKLVFLEVPDNNIEQL-GDCV--KHYSKLNRIIHAACNKLIAKTPNP--TLMPRLNKLVFLNLRGSKSLKSLPSEIFNL 550 (689)
Q Consensus 476 ~~~L~~L~l~~~~i~~l-~~~~--~~l~~L~~l~l~~~~~l~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 550 (689)
+.+|++|++++|.+... |..+ ..+++|++|+++++..- ...+.. ..+..+++|++|++++|.+.+..|..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34577777777766533 3444 66777777777765422 211110 123468889999999998766667788899
Q ss_pred CCCCEEeccCCCCCCC--CC--C--CCcCCCcEEEcccccccccCcc----cccCCCCCEEecCCCCCCCCCCcccCCC-
Q 048627 551 EFLTKLDLSGCSKLKR--LP--E--ISSGNISWLLLRGSAIEELPSS----IERQLRLSWLDLTDCKMFKSLPSSLCKL- 619 (689)
Q Consensus 551 ~~L~~L~l~~~~~l~~--~p--~--~~~~~L~~L~l~~~~l~~l~~~----i~~l~~L~~L~l~~~~~~~~lp~~~~~l- 619 (689)
++|++|++++|...+. ++ . ....+|++|++++|.++.++.. +..+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 9999999999875431 11 1 2346889999999999866653 5788999999999999977778877777
Q ss_pred --CCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 620 --KSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 620 --~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
++|++|++++|... .+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++..
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 69999999998766 7887764 799999999999998875 6889999999999999864
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2e-17 Score=160.57 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=128.0
Q ss_pred CceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccC-CCCCcccC-ccCCCCCCCC
Q 048627 478 KLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRG-SKSLKSLP-SEIFNLEFLT 554 (689)
Q Consensus 478 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p-~~l~~l~~L~ 554 (689)
+|++|++++|.++.++. .+..+++|++|+++++..+ ..++ ...+.++++|++|++++ |. +..+| ..+..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-~~i~-~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-QQLE-SHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-CEEC-TTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-ceeC-HhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCC
Confidence 55555555555555544 3555555555555554323 2222 12445566666666665 44 33333 3455666666
Q ss_pred EEeccCCCCCCCCCCC-CcCCCc---EEEcccc-cccccCcc-cccCCCCC-EEecCCCCCCCCCCcccCCCCCccEEEe
Q 048627 555 KLDLSGCSKLKRLPEI-SSGNIS---WLLLRGS-AIEELPSS-IERQLRLS-WLDLTDCKMFKSLPSSLCKLKSLGVLDL 627 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~-~~~~L~---~L~l~~~-~l~~l~~~-i~~l~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~l 627 (689)
+|++++|. +..+|.. ...+|+ .|++++| .++.+|.. +..+++|+ .|++++|.+. .+|......++|+.|++
T Consensus 109 ~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred EEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 66666665 3334541 123444 7777777 77777654 78899999 9999999874 77776555689999999
Q ss_pred ecCCCCCcc-CcccCCC-CCCCEEEccCCCCccccchhhccCCCcEEecCCCCC
Q 048627 628 HGCSNLRRL-PECLGQL-SSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 628 ~~~~~~~~~-p~~l~~l-~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
++|..+..+ +..+..+ ++|+.|++++|+++.+|.. .+++|+.|++.+|..
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 998644455 4567888 9999999999999998876 688999999998754
No 78
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=7.1e-17 Score=167.20 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=170.0
Q ss_pred ccccCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchh-cCCCChH
Q 048627 56 FQLRDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVES-QRPGGLA 134 (689)
Q Consensus 56 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ 134 (689)
+.++..+..||||+++++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+.. .... .......
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL-RKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG-GGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc-hhhccccCCCHH
Confidence 4555677789999999999999 742 589999999999999999999887532 455552 2210 0001222
Q ss_pred HHHHHHHHHhc-------------CC-------CC---------CCcchHHHHHhhcC---CcEEEEEcCCCChH-----
Q 048627 135 WLRQKLLLNLL-------------KD-------EN---------VIPDIDLNFRRLSR---IKILIVFDDVTCFT----- 177 (689)
Q Consensus 135 ~l~~~~l~~~~-------------~~-------~~---------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~----- 177 (689)
.....+...+. .. .. .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 22222222110 00 00 01223333333321 48999999996532
Q ss_pred HHHHHhcCCCCCCCCceEEeeccchhhhhh-----------cCc-ceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHH
Q 048627 178 QLESLIGSLDWLTPVSRIIITTRNKQVLRN-----------WEV-RKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKL 245 (689)
Q Consensus 178 ~~~~l~~~l~~~~~g~~iliTtR~~~~~~~-----------~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 245 (689)
.+..++..+....++..+|+|++....... .+. ...+.+.+|+.+++.+++...+.........
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 222222211111246789999987643221 112 3689999999999999998754211111111
Q ss_pred HHHHHHHhCCCchhHHHhhhhhcC-CCHHHHHHH-HHHHHhcCCchHHHHHHHHh---cCCCHHHHHHhhhcccccCCcC
Q 048627 246 SSNVMKYAQGVPLALKVLGCFLYK-REKEVWESA-INKLQRILHPSIREVLKISY---DGLDDKEKNIFLDVACFFRGEG 320 (689)
Q Consensus 246 ~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~-l~~l~~~~~~~~~~~l~~s~---~~L~~~~~~~~~~la~f~~~~~ 320 (689)
...+++.++|+|++++.++..+.. .+...|... .+.. ...+...+.-.+ ..+++..+.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 278999999999999998877542 233333211 1111 011111121111 1678889999999998 3 3 6
Q ss_pred HHHHHHHHH-hcC--C---CchhchhHHhhcCceEEccCCeEE-ecHHHHHHH
Q 048627 321 VNLVMKFFD-ASG--F---YPEIGINVLVDKSLIAIDSYNKIT-MHDLLQELG 366 (689)
Q Consensus 321 ~~~l~~l~~-~~~--~---~~~~~l~~L~~~~li~~~~~~~~~-~H~lv~~~a 366 (689)
...+..... ..| . ....+++.|.+.++|...+ +.|. .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 666654432 223 1 2346689999999998874 4555 689988764
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.4e-16 Score=159.02 Aligned_cols=199 Identities=19% Similarity=0.152 Sum_probs=165.8
Q ss_pred CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCC
Q 048627 475 SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLT 554 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 554 (689)
.+++|+++++.++.++.+|..+. .+++.|+++++. + ..++ +..+.++++|++|++++|.+ ..+|.. +.+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l-~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-L-YTFS-LATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-C-SEEE-GGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-C-CccC-HHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCC
Confidence 45789999999999999988765 689999999875 2 2222 34678899999999999984 455553 7899999
Q ss_pred EEeccCCCCCCCCCCCC--cCCCcEEEcccccccccC-cccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCC
Q 048627 555 KLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEELP-SSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCS 631 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 631 (689)
+|++++|. +..+|... ..+|+.|++++|.++.+| ..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999987 45677632 368999999999999887 468999999999999999866555667899999999999987
Q ss_pred CCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 632 NLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 632 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
..+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++.+|++.-
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 66544456688999999999999999999999999999999999998753
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.7e-16 Score=155.59 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=151.3
Q ss_pred CcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCcc-cccCccch
Q 048627 427 KLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGDC-VKHYSKLN 503 (689)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~ 503 (689)
+.+.++++++.+.. +|.. ++ ..++.|++.++.+..+|. .+ .+++|++|++++|.++.++.. +..+++|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~---~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSN---IP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSS-CCSC---CC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCCCc-cCCC---CC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 46678888777664 3332 22 467888888888888886 34 788999999999988888765 47788999
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEc
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLL 580 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l 580 (689)
+|+++++. + ..++ +..+.++++|++|++++|.+....|..+..+++|++|++++|. +..+|.. ...+|+.|++
T Consensus 89 ~L~l~~n~-l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 89 TLWVTDNK-L-QALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp EEECCSSC-C-CCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCc-C-CcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe
Confidence 99888764 3 3333 3456788999999999998666666667899999999999987 4455543 2468899999
Q ss_pred ccccccccCcc-cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC
Q 048627 581 RGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL 633 (689)
Q Consensus 581 ~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 633 (689)
++|.+..+|.. +..+++|++|++++|.+....+..+..+++|+.|++++|...
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 99999988764 788999999999999986555556889999999999998643
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.5e-19 Score=186.47 Aligned_cols=237 Identities=16% Similarity=0.106 Sum_probs=148.3
Q ss_pred cccChhhhhCCCCcceEEeccccCCCCCccc----ccccCcccccceeEEEecCCCCCCCC----CCC--------CcCC
Q 048627 415 IHLNPKTFTKMCKLRFLKFYSSSFNGENKCK----VSYLQDPAFAEVKYFHWHGYPLKSLP----SNL--------SAEK 478 (689)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~l~~~~L~~l~~~~~~~~~lp----~~~--------~~~~ 478 (689)
+......+..+++|+.|++++|.+....+.. +..++ +|++|++.++.+..+. ..+ .+++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-----~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-----TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-----CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3344567788899999999998776542222 33333 6666666665544332 111 3455
Q ss_pred ceeeecCCCCccc-----cCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcc----cCccCCC
Q 048627 479 LVFLEVPDNNIEQ-----LGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKS----LPSEIFN 549 (689)
Q Consensus 479 L~~L~l~~~~i~~-----l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~ 549 (689)
|++|++++|.+.. ++..+ .++++|++|+|++|.+... ++..+..
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l---------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFL---------------------------SKHTPLEHLYLHNNGLGPQAGAKIARALQE 148 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHH---------------------------HHCTTCCEEECCSSCCHHHHHHHHHHHHHH
T ss_pred ccEEECCCCcCCHHHHHHHHHHH---------------------------HhCCCCCEEECcCCCCCHHHHHHHHHHHHH
Confidence 6666666665543 22233 3445566666666554322 2222222
Q ss_pred C---------CCCCEEeccCCCCC-CCCCCC-----CcCCCcEEEccccccc------ccCcccccCCCCCEEecCCCCC
Q 048627 550 L---------EFLTKLDLSGCSKL-KRLPEI-----SSGNISWLLLRGSAIE------ELPSSIERQLRLSWLDLTDCKM 608 (689)
Q Consensus 550 l---------~~L~~L~l~~~~~l-~~~p~~-----~~~~L~~L~l~~~~l~------~l~~~i~~l~~L~~L~l~~~~~ 608 (689)
+ ++|++|++++|... ..+|.. ...+|+.|++++|.++ -+|..+..+++|++|++++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 2 56666666666533 222210 1245666666666665 2333677888888888888887
Q ss_pred C----CCCCcccCCCCCccEEEeecCCCCCc----cCccc--CCCCCCCEEEccCCCCcc-----ccchh-hccCCCcEE
Q 048627 609 F----KSLPSSLCKLKSLGVLDLHGCSNLRR----LPECL--GQLSSPILLNLAETNIER-----IPKSI-IQLFMLRYL 672 (689)
Q Consensus 609 ~----~~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l--~~l~~L~~L~l~~~~l~~-----lp~~~-~~l~~L~~L 672 (689)
. ..+|..+..+++|++|+|++|...+. +|..+ +.+++|+.|++++|.++. +|..+ .++++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 4 56777788888888888888876654 55665 347888888888888886 78777 668888888
Q ss_pred ecCCCCCCCCC
Q 048627 673 LLNCSEGHESI 683 (689)
Q Consensus 673 ~l~~~~~l~~~ 683 (689)
++++|++.+..
T Consensus 309 ~l~~N~l~~~~ 319 (386)
T 2ca6_A 309 ELNGNRFSEED 319 (386)
T ss_dssp ECTTSBSCTTS
T ss_pred EccCCcCCcch
Confidence 88888887654
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=169.14 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=133.8
Q ss_pred ceeEEEecCCCCC-CCCCCC---CcCCceeeecCCCCccccCcccccC-----ccchhhccccCccccccCCCCCCCCCC
Q 048627 456 EVKYFHWHGYPLK-SLPSNL---SAEKLVFLEVPDNNIEQLGDCVKHY-----SKLNRIIHAACNKLIAKTPNPTLMPRL 526 (689)
Q Consensus 456 ~L~~l~~~~~~~~-~lp~~~---~~~~L~~L~l~~~~i~~l~~~~~~l-----~~L~~l~l~~~~~l~~~~~~~~~~~~l 526 (689)
+|++|++.++.+. .+|..+ .+++|++|++++|.+...|..+..+ ++|++|+++++. + ..++ +..+.++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l-~~~~-~~~~~~l 172 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-S-LNFS-CEQVRVF 172 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-C-CCCC-TTTCCCC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-C-ccch-HHHhccC
Confidence 4555555555554 344432 4566677777777666665555555 667777776654 2 2222 2466778
Q ss_pred CcccEEeccCCCCCcc--cCccC--CCCCCCCEEeccCCCCCC--CCCCC---CcCCCcEEEcccccccccC--cccccC
Q 048627 527 NKLVFLNLRGSKSLKS--LPSEI--FNLEFLTKLDLSGCSKLK--RLPEI---SSGNISWLLLRGSAIEELP--SSIERQ 595 (689)
Q Consensus 527 ~~L~~L~l~~~~~~~~--~p~~l--~~l~~L~~L~l~~~~~l~--~~p~~---~~~~L~~L~l~~~~l~~l~--~~i~~l 595 (689)
++|++|++++|.+.+. +|..+ ..+++|++|++++|.... .++.. ...+|+.|++++|.+...+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8888888888876554 33344 678888888888876431 12211 1257888888888887654 345668
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcc
Q 048627 596 LRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIER 658 (689)
Q Consensus 596 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 658 (689)
++|++|++++|.+. .+|..+. ++|++|++++|...+. |. +..+++|+.|++++|+++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 89999999999984 8888776 8999999999876554 66 8889999999999998763
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.5e-18 Score=178.16 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=147.5
Q ss_pred CcCCceeeecCCCCccc--cCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCc--ccCccCCCC
Q 048627 475 SAEKLVFLEVPDNNIEQ--LGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLK--SLPSEIFNL 550 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l 550 (689)
.+.+|++|++++|.+.. ++..+..+++|++|+++++. +.... +..++++++|++|++++|...+ .+|..+..+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~--~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPI--VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 56778888888887753 56667778888888888764 21222 2345668888999998884333 366667788
Q ss_pred CCCCEEeccCCCCCCC--CCCC--CcC-CCcEEEccccc--c--cccCcccccCCCCCEEecCCCC-CCCCCCcccCCCC
Q 048627 551 EFLTKLDLSGCSKLKR--LPEI--SSG-NISWLLLRGSA--I--EELPSSIERQLRLSWLDLTDCK-MFKSLPSSLCKLK 620 (689)
Q Consensus 551 ~~L~~L~l~~~~~l~~--~p~~--~~~-~L~~L~l~~~~--l--~~l~~~i~~l~~L~~L~l~~~~-~~~~lp~~~~~l~ 620 (689)
++|++|++++|..+.. ++.. ..+ +|+.|++++|. + ..+|..+..+++|++|++++|. +....+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 8999999998843442 2321 125 88999998884 3 4677788899999999999998 5567777889999
Q ss_pred CccEEEeecCCCC-CccCcccCCCCCCCEEEccCCCCccccchhhcc-CCCcEEecCCCCCCCCCCCC
Q 048627 621 SLGVLDLHGCSNL-RRLPECLGQLSSPILLNLAETNIERIPKSIIQL-FMLRYLLLNCSEGHESIPKR 686 (689)
Q Consensus 621 ~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l-~~L~~L~l~~~~~l~~~p~~ 686 (689)
+|++|++++|... ......++.+++|+.|++++| +.. ..+..+ .+|..|++++|.+.+..|..
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCc
Confidence 9999999998632 222235778999999999999 431 123333 23666678999999988864
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.1e-16 Score=173.20 Aligned_cols=186 Identities=22% Similarity=0.301 Sum_probs=127.5
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
+++.|++.++.+..+|..+ +++|++|++++|.++.+| ..+++|++|+++++. + ..+|. +++ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l-~~ip~---l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR-L-STLPE---LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-C-SCCCC---CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-C-CCcch---hhc--CCCEEECC
Confidence 7888999999998888866 378999999999888877 446777778777753 3 33443 333 77888888
Q ss_pred CCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcc
Q 048627 536 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSS 615 (689)
Q Consensus 536 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~ 615 (689)
+|.+.+ +|. .+++|++|++++|.. +.+|. ...+|+.|++++|.++.+|. +. ++|+.|++++|.+ ..+|.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~- 197 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA- 197 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC-
T ss_pred CCcCCC-CCC---cCccccEEeCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh-
Confidence 777433 665 567778888877763 34665 34677777777777777776 54 6777777777766 36665
Q ss_pred cCCCCCc-------cEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhcc
Q 048627 616 LCKLKSL-------GVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQL 666 (689)
Q Consensus 616 ~~~l~~L-------~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l 666 (689)
+.. +| +.|++++|... .+|..+..+++|+.|++++|+++ .+|..+.++
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 443 55 77777775543 56766666777777777777776 555555543
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=3e-16 Score=156.02 Aligned_cols=198 Identities=19% Similarity=0.157 Sum_probs=118.4
Q ss_pred ceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEE
Q 048627 456 EVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFL 532 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L 532 (689)
.+++|++.++.+..++. .+ .+++|++|++++|.+..++. .+..+++|++|+++++. + ..++ +..+.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l-~~~~-~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I-QSLA-LGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C-CEEC-TTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c-CccC-hhhhcCCccccEE
Confidence 44555555555555544 22 45556666666665555443 35555566666655543 1 1111 2345566666666
Q ss_pred eccCCCCCcccCccCCCCCCCCEEeccCCCCCC-CCCCCC--cCCCcEEEcccccccccC-cccccCCCCC----EEecC
Q 048627 533 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNISWLLLRGSAIEELP-SSIERQLRLS----WLDLT 604 (689)
Q Consensus 533 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~-~~p~~~--~~~L~~L~l~~~~l~~l~-~~i~~l~~L~----~L~l~ 604 (689)
++++|...+..+..++.+++|++|++++|.... .+|... ..+|+.|++++|.++.++ ..+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 666666444434356666666777666665433 234322 256667777777776654 3455555555 88888
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
+|.+ ..+|.......+|+.|++++|...+..+..+..+++|+.|++++|++.
T Consensus 186 ~n~l-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCC-CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCcc-cccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 8887 445545555568999999988765544455678889999999988776
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.1e-16 Score=162.78 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=152.0
Q ss_pred ceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCCceeeecCCCCccc-cCc-ccccCccchh
Q 048627 429 RFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLEVPDNNIEQ-LGD-CVKHYSKLNR 504 (689)
Q Consensus 429 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~L~~L~l~~~~i~~-l~~-~~~~l~~L~~ 504 (689)
++++.+++.++. +|..+ + .+++.|++.++.++.||+. | ++++|++|++++|.+.+ ++. .+.++.++..
T Consensus 12 ~~v~C~~~~Lt~-iP~~l---~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL---P----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCS-CCTTC---C----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCc-cCcCc---C----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 456666665553 34322 2 4677788888888888764 4 67888888888887643 443 3566777776
Q ss_pred hccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCc----CCCcEEEc
Q 048627 505 IIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLLL 580 (689)
Q Consensus 505 l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~----~~L~~L~l 580 (689)
+....++.+ ..++ +..+.++++|++|++++|.+....+.......++..|++.++..+..+|...+ ..++.|++
T Consensus 84 ~l~~~~N~l-~~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 84 IRIEKANNL-LYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEETTC-CEEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhcccCCcc-cccC-chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 666665555 4443 34667778888888887774433333344556677777777766666665432 34567777
Q ss_pred ccccccccCcccccCCCCCEEecCCCCCCCCCCc-ccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCC-CCcc
Q 048627 581 RGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPS-SLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAET-NIER 658 (689)
Q Consensus 581 ~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~-~l~~ 658 (689)
++|.++.+|..+....+|+.|++.+|...+.+|. .+..+++|++|++++|. +..+|.. .+.+|+.|.+.++ ++++
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCC
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCc
Confidence 7777777777766667777777776555566765 45677788888887764 4455542 3566777766554 4667
Q ss_pred ccchhhccCCCcEEecCC
Q 048627 659 IPKSIIQLFMLRYLLLNC 676 (689)
Q Consensus 659 lp~~~~~l~~L~~L~l~~ 676 (689)
+| .+.++++|+.+++.+
T Consensus 239 lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CC-CTTTCCSCCEEECSC
T ss_pred CC-CchhCcChhhCcCCC
Confidence 77 466777777777764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=8.2e-16 Score=150.32 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=111.3
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
..+.+++.++.+..+|..+. .+|+.|++++|.+..++. ..+.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD--------------------------ATFRGLTKLTWLNLD 67 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT--------------------------TTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH--------------------------hHhcCcccCCEEECC
Confidence 34567777777777776554 467777777776654432 134455566666666
Q ss_pred CCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCC
Q 048627 536 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKS 611 (689)
Q Consensus 536 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~ 611 (689)
+|.+.+..|..+..+++|++|++++|... .+|.. ...+|++|++++|.++.+|.. +..+++|++|++++|.+.+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 66654444444556666666666665532 23221 124555555555666666554 56778888888888877544
Q ss_pred CCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 612 LPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 612 lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+..++.+++|++|+|++|...+..+..+..+++|+.|++++|++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 4446778888888888887766655667777888888888888775
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=3.6e-16 Score=157.74 Aligned_cols=193 Identities=13% Similarity=0.186 Sum_probs=155.6
Q ss_pred hhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCcc
Q 048627 422 FTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSK 501 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 501 (689)
+..+++|+.|+++++.+... | .+..++ +|++|++.+|.+..+|....+++|++|++++|.+..++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~-----~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLN-----NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCT-----TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccC-----CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 44577899999998877653 3 355554 88999999999999988448899999999999998875 6888999
Q ss_pred chhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCC-CCcCCCcEEEc
Q 048627 502 LNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE-ISSGNISWLLL 580 (689)
Q Consensus 502 L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~-~~~~~L~~L~l 580 (689)
|++|+++++. + ..+ ..+.++++|++|++++|.+ ..++. ++.+++|++|++++|... .++. ....+|+.|++
T Consensus 109 L~~L~l~~n~-l-~~~---~~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQ-I-TDV---TPLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSC-C-CCC---GGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEEC
T ss_pred CCEEECCCCC-C-CCc---hhhcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCC-CChhhcCCCCCCEEEC
Confidence 9999999875 3 223 3478899999999999985 44554 889999999999998744 4443 33478999999
Q ss_pred ccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC
Q 048627 581 RGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL 633 (689)
Q Consensus 581 ~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 633 (689)
++|.+..++. +..+++|++|++++|.+. .++ .+..+++|+.|++++|...
T Consensus 181 ~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCeee
Confidence 9999998876 889999999999999984 444 3899999999999998754
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.1e-16 Score=151.34 Aligned_cols=194 Identities=17% Similarity=0.159 Sum_probs=142.0
Q ss_pred cceeEEEecCCCCCCCCC-CC-CcCCceeeecCCCC-ccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCccc
Q 048627 455 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLEVPDNN-IEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLV 530 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~-~~-~~~~L~~L~l~~~~-i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~ 530 (689)
..++.|++.++.++.+|. .+ .+++|++|++++|. ++.++. .+..+++|++|++++++.+ ..++ +..+.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~-~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYID-PDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEEC-TTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcC-HHHhCCCCCCC
Confidence 366777777777777776 34 67788888888886 777765 5777888888888875555 4443 24567788888
Q ss_pred EEeccCCCCCcccCccCCCCCCCC---EEeccCCCCCCCCCCCC---cCCCc-EEEcccccccccCcccccCCCCCEEec
Q 048627 531 FLNLRGSKSLKSLPSEIFNLEFLT---KLDLSGCSKLKRLPEIS---SGNIS-WLLLRGSAIEELPSSIERQLRLSWLDL 603 (689)
Q Consensus 531 ~L~l~~~~~~~~~p~~l~~l~~L~---~L~l~~~~~l~~~p~~~---~~~L~-~L~l~~~~l~~l~~~i~~l~~L~~L~l 603 (689)
+|++++|.+ ..+|. +..+++|+ +|++++|..+..+|... ..+|+ .|++++|.++.+|......++|+.|++
T Consensus 109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 888888874 44776 77777777 88888885566666533 35677 888888888888876655588999999
Q ss_pred CCCC-CCCCCCcccCCC-CCccEEEeecCCCCCccCcccCCCCCCCEEEccCCC
Q 048627 604 TDCK-MFKSLPSSLCKL-KSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETN 655 (689)
Q Consensus 604 ~~~~-~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 655 (689)
++|. +....+..+..+ ++|+.|++++|... .+|.. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 9995 643335567888 99999999997654 56654 67889999998763
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=2.1e-15 Score=169.04 Aligned_cols=248 Identities=17% Similarity=0.182 Sum_probs=185.7
Q ss_pred hhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccc---cCcccc
Q 048627 421 TFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQ---LGDCVK 497 (689)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~---l~~~~~ 497 (689)
.+..+.+++.|.+.++.+.+..+ .....++.+.+.++.....+....+++|++|++++|.+.. .+....
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPT--------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCC--------CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccchhhhhhhcccccccCcCc--------ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 35566788888888877654321 1234677788888877777777788899999999998763 344455
Q ss_pred cCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCC--CcCC
Q 048627 498 HYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEI--SSGN 574 (689)
Q Consensus 498 ~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~ 574 (689)
.+.+|+.+++..+... . ....+..+++|+.+++..+......+ ..+..+++++.++++.|......|.. ....
T Consensus 395 ~~~~L~~L~~~~~~~~-~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVI-T---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp SCSCCCEEECCSCSEE-E---ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhhhhhhhhccccccc-c---ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 6778888887766432 1 12356778889999998877555444 34567888999999988754444432 2367
Q ss_pred CcEEEccccccc--ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEcc
Q 048627 575 ISWLLLRGSAIE--ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLA 652 (689)
Q Consensus 575 L~~L~l~~~~l~--~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 652 (689)
++.|++++|.+. ..|..+..+++|++|++++|.+.+..|..++++++|++|+|++|...+..|..++.+++|+.|+++
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 889999888654 367788889999999999998877778888999999999999988777777788889999999999
Q ss_pred CCCCccc-cchhhcc-CCCcEEecCCCCCC
Q 048627 653 ETNIERI-PKSIIQL-FMLRYLLLNCSEGH 680 (689)
Q Consensus 653 ~~~l~~l-p~~~~~l-~~L~~L~l~~~~~l 680 (689)
+|+++.+ |..+.++ ++|+.|++++|++.
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999855 4567777 57999999988875
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.1e-16 Score=160.54 Aligned_cols=222 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCc-ccccCccchhhccccCccccccCCCCCCCCCCCcccEE-eccC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGD-CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFL-NLRG 536 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L-~l~~ 536 (689)
.+..+++.++.+|..+ ..++++|++++|+|+.+|. .+.++++|++|+++++..+ ..++ ...+.+++++..+ .+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~-~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIE-ADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEEC-TTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccC-hhHhhcchhhhhhhcccC
Confidence 3455556666666655 3456666666666666654 3566666666666665433 2232 2345556655543 3333
Q ss_pred CCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCc---CCCcEEEccc-ccccccCcc-cccC-CCCCEEecCCCCCCC
Q 048627 537 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLLLRG-SAIEELPSS-IERQ-LRLSWLDLTDCKMFK 610 (689)
Q Consensus 537 ~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~---~~L~~L~l~~-~~l~~l~~~-i~~l-~~L~~L~l~~~~~~~ 610 (689)
|.+....|..+..+++|++|++++|. +..+|.... .++..|++.+ +.+..++.. +..+ ..++.|++++|.+ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-Q 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-C
T ss_pred CcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-c
Confidence 44322234455666666666666655 333333221 2344555543 445555442 3333 3466666666665 4
Q ss_pred CCCcccCCCCCccEEEeecCCCCCccCc-ccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCCCCCCCC
Q 048627 611 SLPSSLCKLKSLGVLDLHGCSNLRRLPE-CLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHESIPKRP 687 (689)
Q Consensus 611 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 687 (689)
.+|.......+|+.|.+++|+.++.+|. .+..+++|+.|++++|+++++|.. .+.+|+.|.+.+|..++.+|.+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCch
Confidence 5555555556666666666566666654 346666666666666666666643 24556666666666666666543
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.2e-15 Score=165.21 Aligned_cols=188 Identities=19% Similarity=0.249 Sum_probs=152.3
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhh
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRI 505 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l 505 (689)
.+++.|++++|.+.+ +|..+. .+|++|++++|.++.+| -.+++|++|++++|.++.+|. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~-------~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP-------PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC-------TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc-------CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 389999999998876 565442 47899999999999999 446899999999999998888 655 89999
Q ss_pred ccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccc
Q 048627 506 IHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAI 585 (689)
Q Consensus 506 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l 585 (689)
+++++. + ..+|. .+++|++|++++|.+. .+|. .+++|++|++++|. ++.+|. ...+|+.|++++|.+
T Consensus 126 ~Ls~N~-l-~~lp~-----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 126 DVDNNQ-L-TMLPE-----LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LPESLEALDVSTNLL 192 (571)
T ss_dssp ECCSSC-C-SCCCC-----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCC
T ss_pred ECCCCc-C-CCCCC-----cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hhCCCCEEECcCCCC
Confidence 999864 4 33443 6789999999999854 4776 57899999999987 445777 448999999999999
Q ss_pred cccCcccccCCCC-------CEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCC
Q 048627 586 EELPSSIERQLRL-------SWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQL 643 (689)
Q Consensus 586 ~~l~~~i~~l~~L-------~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 643 (689)
+.+|. +.. +| +.|++++|.+ ..+|..+.++++|+.|+|++|...+.+|..++.+
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 99988 654 77 9999999987 5789988899999999999999988888776654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=3.3e-15 Score=145.99 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=122.9
Q ss_pred CCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCC-C-CcCCceeeecCCCCccccCcccccCccch
Q 048627 426 CKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLEVPDNNIEQLGDCVKHYSKLN 503 (689)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~-~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 503 (689)
.+.+.++++++.+... |.. ++ ..++.|++.++.+..++.. + .+++|++|++++|.++.++..
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~---~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSG---IP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG-------- 77 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSC---CC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------
T ss_pred CCCeEEecCCCCcccc-CCC---CC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh--------
Confidence 4577899988876643 332 22 4889999999999988874 4 789999999999988755332
Q ss_pred hhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEc
Q 048627 504 RIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLL 580 (689)
Q Consensus 504 ~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l 580 (689)
.+.++++|++|++++|.+.+..+..+..+++|++|++++|. +..+|... ..+|+.|++
T Consensus 78 ------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 78 ------------------VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp ------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred ------------------HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEEC
Confidence 23444555666666555443333445556666666666654 23333321 355666666
Q ss_pred ccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCc
Q 048627 581 RGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR 635 (689)
Q Consensus 581 ~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 635 (689)
++|.++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.....
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6677777766 588999999999999998766666889999999999999876554
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.7e-17 Score=170.35 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=160.6
Q ss_pred CCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEE
Q 048627 477 EKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKL 556 (689)
Q Consensus 477 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 556 (689)
.+++.|++++|.+...+..+..+++|++|+++++. +... ..+..+.++++|++|++++|......|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHH-HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHH-HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 56888888888888777777789999999999875 3111 012356788999999999999777888888999999999
Q ss_pred eccCCCCCCC--CCCC--CcCCCcEEEcccc-cccc--cCcccccCC-CCCEEecCCCC--CC-CCCCcccCCCCCccEE
Q 048627 557 DLSGCSKLKR--LPEI--SSGNISWLLLRGS-AIEE--LPSSIERQL-RLSWLDLTDCK--MF-KSLPSSLCKLKSLGVL 625 (689)
Q Consensus 557 ~l~~~~~l~~--~p~~--~~~~L~~L~l~~~-~l~~--l~~~i~~l~-~L~~L~l~~~~--~~-~~lp~~~~~l~~L~~L 625 (689)
++++|..++. +|.. ...+|+.|++++| .++. ++..+..++ +|++|++++|. +. ..+|..+.++++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 9999965552 4432 2378999999999 8884 677889999 99999999994 44 4567777889999999
Q ss_pred EeecCC-CCCccCcccCCCCCCCEEEccCCC-Cc-cccchhhccCCCcEEecCCC
Q 048627 626 DLHGCS-NLRRLPECLGQLSSPILLNLAETN-IE-RIPKSIIQLFMLRYLLLNCS 677 (689)
Q Consensus 626 ~l~~~~-~~~~~p~~l~~l~~L~~L~l~~~~-l~-~lp~~~~~l~~L~~L~l~~~ 677 (689)
++++|. ..+..+..+..+++|+.|++++|. +. .....+.++++|+.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999998 556777788999999999999995 33 22235788999999999999
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.8e-16 Score=146.49 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=126.3
Q ss_pred CCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-CcCCCcEEEcccccccc-cCcccccCCCCCEE
Q 048627 524 PRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEE-LPSSIERQLRLSWL 601 (689)
Q Consensus 524 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~-l~~~i~~l~~L~~L 601 (689)
..+++|+.|++++|.+ ..+| .+..+++|++|++++|. +..++.. .+.+|++|++++|.+.. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5677888888888774 4666 57788888888888883 4444432 24678888998888884 67889999999999
Q ss_pred ecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 602 DLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 602 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
++++|.+.+..|..++.+++|++|++++|..++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999987788899999999999999998677777 6888999999999999999888 78999999999999998754
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1.7e-15 Score=160.05 Aligned_cols=281 Identities=12% Similarity=0.057 Sum_probs=166.0
Q ss_pred CCCCCcccchhhHHHHHHhh-cC--CC--CCeeEEEE--EecCCCCHHHHHHHHHHHhhcc-----ccc-eEEeeeccch
Q 048627 60 DNKNQLVGVESTVEEIESLL-GV--ES--KDVWALGI--WGIGGIGKTTIARAIFDKISGD-----FEG-TCFLENVRVE 126 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l-~~--~~--~~~~~v~I--~G~gGiGKTtLa~~~~~~~~~~-----f~~-~~~~~~~~~~ 126 (689)
..+..|+||+.+++++.+++ .. .. ...+.+.| +|++|+||||||+.+++..... +.. ++|+..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA---- 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----
Confidence 34578999999999999988 41 11 23456777 9999999999999999887543 222 344441
Q ss_pred hcCCCChHHHHHHHHHHhcCCCCC-C----cchHHHHHhhc--CCcEEEEEcCCCCh--------HHHHHHhcCCCCC--
Q 048627 127 SQRPGGLAWLRQKLLLNLLKDENV-I----PDIDLNFRRLS--RIKILIVFDDVTCF--------TQLESLIGSLDWL-- 189 (689)
Q Consensus 127 ~~~~~~~~~l~~~~l~~~~~~~~~-~----~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~l~~~-- 189 (689)
... .....+..+++..+...... . .....+.+.+. +++++|||||++.. ..+..+...+...
T Consensus 95 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 95 FNA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp GGC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 222 45667778887777543211 1 22344455554 67999999999653 2233332222111
Q ss_pred -C--CCceEEeeccchhhhhhc---------CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhC---
Q 048627 190 -T--PVSRIIITTRNKQVLRNW---------EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQ--- 254 (689)
Q Consensus 190 -~--~g~~iliTtR~~~~~~~~---------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~--- 254 (689)
+ ....+|+||+.......+ .....+.+++++.+++.++|...+...........+.+..+++.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 1 334578788755432111 1123499999999999999976532111111122456788999999
Q ss_pred ---CCchhHHHhhhhhc------CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc----CC
Q 048627 255 ---GVPLALKVLGCFLY------KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF----RG 318 (689)
Q Consensus 255 ---g~Plal~~~~~~l~------~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~----~~ 318 (689)
|+|..+..++.... +. +...+..+..... . ...+..++..|++..+.++..++.+. ..
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE---A---ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976555443221 11 2333333332211 0 23344467889999999999888754 22
Q ss_pred cCHHHHHH----HH-HhcCCC------chhchhHHhhcCceEEc
Q 048627 319 EGVNLVMK----FF-DASGFY------PEIGINVLVDKSLIAID 351 (689)
Q Consensus 319 ~~~~~l~~----l~-~~~~~~------~~~~l~~L~~~~li~~~ 351 (689)
++...+.. +. ...+.. ...+++.|.+.++|...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 44444322 22 222321 23568899999999874
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=4.1e-18 Score=183.16 Aligned_cols=247 Identities=16% Similarity=0.102 Sum_probs=129.1
Q ss_pred CcceEEeccccCCC----CCcccccccCcccccceeEEEecCCCCCCC-----CCC-C-CcCCceeeecCCCCccc----
Q 048627 427 KLRFLKFYSSSFNG----ENKCKVSYLQDPAFAEVKYFHWHGYPLKSL-----PSN-L-SAEKLVFLEVPDNNIEQ---- 491 (689)
Q Consensus 427 ~L~~L~l~~~~~~~----~~~~~~~~l~~l~~~~L~~l~~~~~~~~~l-----p~~-~-~~~~L~~L~l~~~~i~~---- 491 (689)
+|++|++++|.+.. .++..+..++ +|++|++.++.+... ... . ..++|++|++++|.+..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLP-----TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCT-----TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCC-----ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 56666666666553 2233444443 556666666554321 111 0 12356666666665542
Q ss_pred -cCcccccCccchhhccccCccccccCCCCCCCC-----CCCcccEEeccCCCCCcc----cCccCCCCCCCCEEeccCC
Q 048627 492 -LGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMP-----RLNKLVFLNLRGSKSLKS----LPSEIFNLEFLTKLDLSGC 561 (689)
Q Consensus 492 -l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~ 561 (689)
++..+..+++|++|+++++..- ... +..+. ..++|++|++++|..... ++..+..+++|++|++++|
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~-~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDIN-EAG--VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCH-HHH--HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHhhCCCCCEEECcCCCcc-hHH--HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 2334445566666666654311 100 00011 133566666666654332 3444555566666666665
Q ss_pred CCCCC----CCC---CCcCCCcEEEcccccccc-----cCcccccCCCCCEEecCCCCC---------------------
Q 048627 562 SKLKR----LPE---ISSGNISWLLLRGSAIEE-----LPSSIERQLRLSWLDLTDCKM--------------------- 608 (689)
Q Consensus 562 ~~l~~----~p~---~~~~~L~~L~l~~~~l~~-----l~~~i~~l~~L~~L~l~~~~~--------------------- 608 (689)
..... ++. ....+|+.|++++|.++. ++..+..+++|++|++++|.+
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 42110 000 012455566666555553 444444555555555555544
Q ss_pred --------CCC----CCcccCCCCCccEEEeecCCCCCccCcccC----C-CCCCCEEEccCCCCc-----cccchhhcc
Q 048627 609 --------FKS----LPSSLCKLKSLGVLDLHGCSNLRRLPECLG----Q-LSSPILLNLAETNIE-----RIPKSIIQL 666 (689)
Q Consensus 609 --------~~~----lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~----~-l~~L~~L~l~~~~l~-----~lp~~~~~l 666 (689)
... +|..+..+++|++|++++|...+..+..+. . .++|+.|++++|.++ .+|..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 221 334445556777777777654433232222 1 567888888888777 577777778
Q ss_pred CCCcEEecCCCCCCC
Q 048627 667 FMLRYLLLNCSEGHE 681 (689)
Q Consensus 667 ~~L~~L~l~~~~~l~ 681 (689)
++|+.|++++|++..
T Consensus 398 ~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 398 HSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECCSSSCCH
T ss_pred CCccEEECCCCCCCH
Confidence 888888888887754
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1.8e-15 Score=165.78 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=119.0
Q ss_pred ceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEecc
Q 048627 456 EVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLR 535 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 535 (689)
.+..+.+....+..++..-.+.+|+.|++++|.+..++ .+..+++|+.|+++++. + ..++ .+.++++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l-~~~~---~l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-L-TDIK---PLTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-C-CCCG---GGGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-C-CCCh---hhccCCCCCEEECc
Confidence 44445555555555554446778888888888887765 46777777777777654 2 2222 26677777777777
Q ss_pred CCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCc
Q 048627 536 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPS 614 (689)
Q Consensus 536 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~ 614 (689)
+|.+ ..+| .+..+++|++|+|++|... .+|.. .+.+|+.|++++|.+..+ ..+..+++|+.|+|++|.+.+..|
T Consensus 96 ~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 96 ENKI-KDLS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SSCC-CCCT-TSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC-CCCh-hhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 7763 3444 4677777777777777633 33322 235666777776666665 456666677777777666643333
Q ss_pred ccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc
Q 048627 615 SLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 615 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
+..+++|+.|+|++|...+ +| .+..+++|+.|++++|.+...|
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred -hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 6666677777776665433 33 4566666777777666655433
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=9.4e-18 Score=175.63 Aligned_cols=225 Identities=15% Similarity=0.084 Sum_probs=163.9
Q ss_pred eeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccc-----cCcccccCccchhhccccCc--cccccCCC-----CCCC
Q 048627 457 VKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQ-----LGDCVKHYSKLNRIIHAACN--KLIAKTPN-----PTLM 523 (689)
Q Consensus 457 L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~l~l~~~~--~l~~~~~~-----~~~~ 523 (689)
+++..+....+..++..+ .+++|++|++++|.+.. ++..+..+++|++|+++++. .+...+|. ...+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333344455544 45677888888877753 33446677778888777652 22111111 0123
Q ss_pred CCCCcccEEeccCCCCCc----ccCccCCCCCCCCEEeccCCCCCCC----CCCCC--c---------CCCcEEEccccc
Q 048627 524 PRLNKLVFLNLRGSKSLK----SLPSEIFNLEFLTKLDLSGCSKLKR----LPEIS--S---------GNISWLLLRGSA 584 (689)
Q Consensus 524 ~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~l~~----~p~~~--~---------~~L~~L~l~~~~ 584 (689)
.++++|++|+|++|.+.. .+|..+..+++|++|++++|..... ++... . ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 678999999999999766 4777888999999999999985321 11110 1 589999999999
Q ss_pred cc--ccC---cccccCCCCCEEecCCCCCCC-----CCCcccCCCCCccEEEeecCCCC----CccCcccCCCCCCCEEE
Q 048627 585 IE--ELP---SSIERQLRLSWLDLTDCKMFK-----SLPSSLCKLKSLGVLDLHGCSNL----RRLPECLGQLSSPILLN 650 (689)
Q Consensus 585 l~--~l~---~~i~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~ 650 (689)
++ .+| ..+..+++|++|++++|.+.. ..|..+..+++|++|+|++|... ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 86 444 567789999999999998752 34447889999999999999875 67888889999999999
Q ss_pred ccCCCCcc-----ccchhhc--cCCCcEEecCCCCCCC
Q 048627 651 LAETNIER-----IPKSIIQ--LFMLRYLLLNCSEGHE 681 (689)
Q Consensus 651 l~~~~l~~-----lp~~~~~--l~~L~~L~l~~~~~l~ 681 (689)
+++|.++. +|..+.. +++|+.|++++|.+..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 99999983 5667744 8999999999999877
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.9e-15 Score=148.67 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=107.5
Q ss_pred CcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCC
Q 048627 475 SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLT 554 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 554 (689)
.+.+|++|++++|.+..++ .+..+++|++|+++++. + ..++ .+.++++|++|++++|.+ ..+|. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l-~~~~---~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-L-TDIK---PLANLKNLGWLFLDENKV-KDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-C-CCCG---GGTTCTTCCEEECCSSCC-CCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-c-CCCc---ccccCCCCCEEECCCCcC-CCChh-hccCCCCC
Confidence 5678888888888888774 36777888888887754 2 2222 267777888888887773 34444 77777888
Q ss_pred EEeccCCCCCCCCCCC-CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCC
Q 048627 555 KLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNL 633 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 633 (689)
+|++++|.. ..++.. .+.+|+.|++++|.++.+ ..+..+++|+.|++++|.+.+ ++. +..+++|++|++++|...
T Consensus 116 ~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcC-CCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCC
Confidence 888877753 333322 225566666666666655 346666666666666666533 332 566666666666665433
Q ss_pred CccCcccCCCCCCCEEEccCCCCcccc
Q 048627 634 RRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 634 ~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
.+| .+..+++|+.|++++|.+...|
T Consensus 192 -~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 -DLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -BCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -CCh-hhccCCCCCEEECcCCcccCCc
Confidence 233 3556666666666666655433
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=153.17 Aligned_cols=193 Identities=17% Similarity=0.108 Sum_probs=130.0
Q ss_pred ceeEEEecCCCCCC-CCCC---CCcCCceeeecCCCCccccCc-----ccccCccchhhccccCccccccCCCCCCCCCC
Q 048627 456 EVKYFHWHGYPLKS-LPSN---LSAEKLVFLEVPDNNIEQLGD-----CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRL 526 (689)
Q Consensus 456 ~L~~l~~~~~~~~~-lp~~---~~~~~L~~L~l~~~~i~~l~~-----~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l 526 (689)
+|++|.+.++.+.. +|.. ..+.+|++|++++|.+..... .+..+++|++|+++++.. ..++ +..+.++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~-~~~~~~l 168 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS--PAFS-CEQVRAF 168 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS--CCCC-TTSCCCC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc--chhh-HHHhccC
Confidence 45556665555542 3333 235667777777776654211 233566777777776542 1222 3466778
Q ss_pred CcccEEeccCCCCCcc--cC--ccCCCCCCCCEEeccCCCCCCCCCCC------CcCCCcEEEccccccccc-CcccccC
Q 048627 527 NKLVFLNLRGSKSLKS--LP--SEIFNLEFLTKLDLSGCSKLKRLPEI------SSGNISWLLLRGSAIEEL-PSSIERQ 595 (689)
Q Consensus 527 ~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l~~~~~l~~~p~~------~~~~L~~L~l~~~~l~~l-~~~i~~l 595 (689)
++|++|+|++|.+.+. ++ ..++.+++|++|++++|.. +.+|.. ...+|++|++++|.+..+ |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 8888888888875542 32 2235788888888888764 433331 236788888888888866 7777666
Q ss_pred ---CCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 596 ---LRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 596 ---~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++|++|++++|.+. .+|..+. ++|++|++++|...+ +|. +..+++|+.|++++|+++
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 69999999999985 7888764 799999999987664 343 567899999999999876
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=1e-17 Score=180.04 Aligned_cols=279 Identities=16% Similarity=0.112 Sum_probs=164.7
Q ss_pred ceeeEEeccCccccc--ccChhhhhCCCCcceEEeccccCCCCCccccc-ccCcccccceeEEEecCCCCC-----CCCC
Q 048627 401 KIEGICLDMSKAKDI--HLNPKTFTKMCKLRFLKFYSSSFNGENKCKVS-YLQDPAFAEVKYFHWHGYPLK-----SLPS 472 (689)
Q Consensus 401 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~~~L~~l~~~~~~~~-----~lp~ 472 (689)
.++.+.+........ ...+..+..+++|++|++++|.+.+..+..+. .++. ...+|++|++.+|.+. .+|.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT-PSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-TTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh-CCCceeEEEccCCCCCHHHHHHHHH
Confidence 344555544433211 12245567777788888877765442221111 1110 0015777777777766 3455
Q ss_pred CC-CcCCceeeecCCCCcccc-----Ccc-cccCccchhhccccCccccccC--CCCCCCCCCCcccEEeccCCCCCccc
Q 048627 473 NL-SAEKLVFLEVPDNNIEQL-----GDC-VKHYSKLNRIIHAACNKLIAKT--PNPTLMPRLNKLVFLNLRGSKSLKSL 543 (689)
Q Consensus 473 ~~-~~~~L~~L~l~~~~i~~l-----~~~-~~~l~~L~~l~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~ 543 (689)
.+ .+++|++|++++|.+... ... .....+|++|++++|..- ... ..+..+..+++|++|++++|.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC-HHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 55 567788888887776521 111 122446777777766311 110 00123345677888888877754332
Q ss_pred CccCC-----CCCCCCEEeccCCCCCCC----CCCC--CcCCCcEEEccccccccc-----Cc-ccccCCCCCEEecCCC
Q 048627 544 PSEIF-----NLEFLTKLDLSGCSKLKR----LPEI--SSGNISWLLLRGSAIEEL-----PS-SIERQLRLSWLDLTDC 606 (689)
Q Consensus 544 p~~l~-----~l~~L~~L~l~~~~~l~~----~p~~--~~~~L~~L~l~~~~l~~l-----~~-~i~~l~~L~~L~l~~~ 606 (689)
+..+. .+++|++|++++|..... ++.. ...+|+.|++++|.++.. +. ....+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 22222 256788888888764331 2222 136788888888877632 12 2235778888888888
Q ss_pred CCCCC----CCcccCCCCCccEEEeecCCCCCccCccc----C-CCCCCCEEEccCCCCcc-----ccchhhccCCCcEE
Q 048627 607 KMFKS----LPSSLCKLKSLGVLDLHGCSNLRRLPECL----G-QLSSPILLNLAETNIER-----IPKSIIQLFMLRYL 672 (689)
Q Consensus 607 ~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~~p~~l----~-~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L 672 (689)
.+... ++..+.++++|++|++++|......+..+ . ..++|+.|++++|.++. ++..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 76442 66667778888888888876543322222 2 23688888888888773 56677788899999
Q ss_pred ecCCCCCCC
Q 048627 673 LLNCSEGHE 681 (689)
Q Consensus 673 ~l~~~~~l~ 681 (689)
++++|.+..
T Consensus 347 ~Ls~n~i~~ 355 (461)
T 1z7x_W 347 QISNNRLED 355 (461)
T ss_dssp ECCSSBCHH
T ss_pred EccCCcccc
Confidence 999987654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.3e-15 Score=166.95 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=128.1
Q ss_pred cceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEec
Q 048627 455 AEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNL 534 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 534 (689)
.+|+.|.+.++.+..+|....+++|+.|++++|.+..++. +..+++|+.|+++++. + .. +..+.++++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l-~~---l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-I-KD---LSSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-C-CC---CTTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-C-CC---ChhhccCCCCCEEEe
Confidence 4778888888888888764478888999998888887766 7888888888888764 3 22 336778888899999
Q ss_pred cCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCC
Q 048627 535 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLP 613 (689)
Q Consensus 535 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp 613 (689)
++|.+. .+| .+..+++|+.|+|++|.... ++.. .+.+|+.|+|++|.+..++. +..+++|+.|+|++|.+. .+|
T Consensus 117 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~-~l~ 191 (605)
T 1m9s_A 117 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR 191 (605)
T ss_dssp TTSCCC-CCG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG
T ss_pred cCCCCC-CCc-cccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC-CCh
Confidence 888744 344 47788889999998887443 3332 34678888998888887766 888888999999888874 444
Q ss_pred cccCCCCCccEEEeecCCCCC
Q 048627 614 SSLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 614 ~~~~~l~~L~~L~l~~~~~~~ 634 (689)
.+..+++|+.|+|++|...+
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEEC
T ss_pred -HHccCCCCCEEEccCCcCcC
Confidence 57888889999888876554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.8e-15 Score=149.80 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=129.6
Q ss_pred cceeEEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEec
Q 048627 455 AEVKYFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNL 534 (689)
Q Consensus 455 ~~L~~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 534 (689)
.+++.+.+.++.+..+|....+++|++|++++|.+..++. +..+++|++|+++++. + .. +..+.++++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l-~~---~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-V-KD---LSSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C-CC---GGGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-C-CC---ChhhccCCCCCEEEC
Confidence 4788888888888888764478889999999998888766 8888889999888764 2 22 335778888999999
Q ss_pred cCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC-CcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCC
Q 048627 535 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-SSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLP 613 (689)
Q Consensus 535 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~-~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp 613 (689)
++|.+. .++ .+..+++|++|++++|... .++.. .+.+|+.|++++|.+..++. +..+++|+.|++++|.+ ..+|
T Consensus 120 ~~n~i~-~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-~~l~ 194 (291)
T 1h6t_A 120 EHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLR 194 (291)
T ss_dssp TTSCCC-CCG-GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCG
T ss_pred CCCcCC-CCh-hhcCCCCCCEEEccCCcCC-cchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-CCCh
Confidence 988743 444 4778889999999888743 33332 23678999999998888776 88888999999999887 4455
Q ss_pred cccCCCCCccEEEeecCCCCC
Q 048627 614 SSLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 614 ~~~~~l~~L~~L~l~~~~~~~ 634 (689)
. +..+++|+.|++++|....
T Consensus 195 ~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GTTCTTCSEEEEEEEEEEC
T ss_pred h-hccCCCCCEEECcCCcccC
Confidence 4 7888999999998876543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.3e-16 Score=165.12 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=134.7
Q ss_pred hhhhhCCCCcceEEeccccCCCCCc----ccccccCcccccceeEEEecCCCCCCCCC-CC-Cc-----CCceeeecCCC
Q 048627 419 PKTFTKMCKLRFLKFYSSSFNGENK----CKVSYLQDPAFAEVKYFHWHGYPLKSLPS-NL-SA-----EKLVFLEVPDN 487 (689)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-~~-~~-----~~L~~L~l~~~ 487 (689)
+..+...++|+.|++++|.+.+..+ ..+..++ .+|+.|++++|.+..... .+ .+ ++|++|++++|
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~----~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP----ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC----TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC----CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 4455556668999998888766543 3344443 267788888887765532 22 22 67888888888
Q ss_pred CccccCcc-----cccC-ccchhhccccCccccccCCCCCC----CCC-CCcccEEeccCCCCCc----ccCccCCCCC-
Q 048627 488 NIEQLGDC-----VKHY-SKLNRIIHAACNKLIAKTPNPTL----MPR-LNKLVFLNLRGSKSLK----SLPSEIFNLE- 551 (689)
Q Consensus 488 ~i~~l~~~-----~~~l-~~L~~l~l~~~~~l~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~p~~l~~l~- 551 (689)
.+...... +..+ ++|++|+++++. + ...+ ... +.. .++|++|+|++|.+.. .++..+..++
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l-~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-F-SSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G-GGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-C-CcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 87644322 3334 677777777664 2 1111 111 222 2477777777776543 3333344444
Q ss_pred CCCEEeccCCCCCCCCCCCC------c-CCCcEEEcccccccc-----cCcccccC-CCCCEEecCCCCCCCCCC----c
Q 048627 552 FLTKLDLSGCSKLKRLPEIS------S-GNISWLLLRGSAIEE-----LPSSIERQ-LRLSWLDLTDCKMFKSLP----S 614 (689)
Q Consensus 552 ~L~~L~l~~~~~l~~~p~~~------~-~~L~~L~l~~~~l~~-----l~~~i~~l-~~L~~L~l~~~~~~~~lp----~ 614 (689)
+|++|++++|......+... . .+|+.|++++|.++. ++..+..+ ++|++|++++|.+...-+ .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 77777777775432222100 1 367777777777665 55555553 477777777776643222 3
Q ss_pred ccCCCCCccEEEeecCCC-------CCccCcccCCCCCCCEEEccCCCCc
Q 048627 615 SLCKLKSLGVLDLHGCSN-------LRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 615 ~~~~l~~L~~L~l~~~~~-------~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+..+++|++|++++|.. ...++..+..+++|+.|++++|.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 345667777777777651 1223344556666777777777765
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2e-14 Score=136.16 Aligned_cols=175 Identities=19% Similarity=0.157 Sum_probs=95.5
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSK 538 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 538 (689)
.+...++.+..+|..+ ..+|++|++++|.++.++.. .+.++++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNG--------------------------VFDELTSLTQLYLGGNK 63 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTT--------------------------TTTTCTTCSEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChh--------------------------hhcccccCcEEECCCCc
Confidence 3444455555666544 34677777777666544332 12334445555555444
Q ss_pred CCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCc
Q 048627 539 SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPS 614 (689)
Q Consensus 539 ~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~ 614 (689)
+.+..+..+..+++|++|++++|... .+|.. ...+|++|++++|.+..+|.. +..+++|++|++++|.+.+..+.
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 32222222344555555555554322 22221 113344444444555544443 56677788888887776544444
Q ss_pred ccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc-cccchhhccCC
Q 048627 615 SLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE-RIPKSIIQLFM 668 (689)
Q Consensus 615 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~ 668 (689)
.+..+++|++|++++|... +.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 5677778888888776433 34556777777777776 77777766554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.2e-14 Score=134.22 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 573 GNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
.+|+.|++++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..|..+..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 344444444455554443 4555666666666666654444444556666666666665555555555556666666666
Q ss_pred cCCCCccc-cchhhccCCCcEEecCCCCCC
Q 048627 652 AETNIERI-PKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 652 ~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l 680 (689)
++|.++.+ |..+..+++|+.|++++|++.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66666544 445555666666666666554
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=4.4e-17 Score=177.53 Aligned_cols=194 Identities=17% Similarity=0.129 Sum_probs=116.6
Q ss_pred CcCCceeeecCCCCccccCcccccCccchhhccccCccccccC-----------CCCCCCCCCCcccEEe-ccCCCCCcc
Q 048627 475 SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKT-----------PNPTLMPRLNKLVFLN-LRGSKSLKS 542 (689)
Q Consensus 475 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~-----------~~~~~~~~l~~L~~L~-l~~~~~~~~ 542 (689)
..++|+.|++++|.++.+|..+..+.+|+.|++.++..+ ... ..+..++++++|+.|+ ++.|. ...
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l-~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL-LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhh-hhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 457889999999999999999999999999988554311 000 0112345566666666 44332 111
Q ss_pred cCc------cCC--CCCCCCEEeccCCCCCCCCCCCC-cCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCC
Q 048627 543 LPS------EIF--NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLP 613 (689)
Q Consensus 543 ~p~------~l~--~l~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp 613 (689)
++. .+. ....|+.|++++|. +..+|... +.+|+.|++++|.++.+|..++.+++|+.|++++|.+.+ +|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 110 000 01246677777664 33455421 245666666666666666666666666666666666533 55
Q ss_pred cccCCCCCccEEEeecCCCCCcc-CcccCCCCCCCEEEccCCCCccccchh----hccCCCcEEe
Q 048627 614 SSLCKLKSLGVLDLHGCSNLRRL-PECLGQLSSPILLNLAETNIERIPKSI----IQLFMLRYLL 673 (689)
Q Consensus 614 ~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~ 673 (689)
.++.+++|++|+|++|...+.. |..++.+++|+.|++++|+++.+|..+ ..+|+|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5666666666666666555544 666666666666666666666554432 2356666664
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=8.2e-13 Score=137.94 Aligned_cols=271 Identities=15% Similarity=0.074 Sum_probs=168.5
Q ss_pred CCCcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc--------ccceEEeeeccchhcCCC
Q 048627 62 KNQLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGD--------FEGTCFLENVRVESQRPG 131 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 131 (689)
++.++||+.+++++.+++.. .....+.+.|+|++|+||||+|+.+++.+... ....+++. .. .. .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~---~~-~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CR---EV-G 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HH---HH-C
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Cc---cC-C
Confidence 47899999999999987752 23446789999999999999999999986433 22334444 21 11 3
Q ss_pred -ChHHHHHHHHHHhcCCCCC------CcchHHHHHhhcCCcEEEEEcCCCChHH-------HHHHhcCCCCCCCCceEEe
Q 048627 132 -GLAWLRQKLLLNLLKDENV------IPDIDLNFRRLSRIKILIVFDDVTCFTQ-------LESLIGSLDWLTPVSRIII 197 (689)
Q Consensus 132 -~~~~l~~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~g~~ili 197 (689)
....+..+++..+.+.... ......+.+.+..++.+|||||++.... +..+... . .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEE
Confidence 5566777777776433211 1335556666776666999999975432 3333332 2 6778888
Q ss_pred eccchhhhhhc------CcceEEEcCCCCHHHHHHHHHHhcc---CCCCCChhHHHHHHHHHHHhC---CCch-hHHHhh
Q 048627 198 TTRNKQVLRNW------EVRKIYEVEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYAQ---GVPL-ALKVLG 264 (689)
Q Consensus 198 TtR~~~~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~ 264 (689)
||+.......+ .....+.+++++.++..+++...+. .....+ .+..+.+++.++ |.|. |+..+-
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 88865321110 1123899999999999999998752 222222 344667777777 8887 333322
Q ss_pred hhh--c-C---CCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccCCcCH-HHHHHHHHhcCCC---
Q 048627 265 CFL--Y-K---REKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFRGEGV-NLVMKFFDASGFY--- 334 (689)
Q Consensus 265 ~~l--~-~---~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~~~-~~l~~l~~~~~~~--- 334 (689)
.+. . + -+.+.+..++.... ...+..++..|++.++..+..++....+-+. .....+....|..
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 222 1 1 25667776666542 2446667889999998888877761110111 2233333332311
Q ss_pred ---chhchhHHhhcCceEEc
Q 048627 335 ---PEIGINVLVDKSLIAID 351 (689)
Q Consensus 335 ---~~~~l~~L~~~~li~~~ 351 (689)
....+..|...|+++..
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 23457889999999874
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=8.2e-15 Score=143.92 Aligned_cols=130 Identities=27% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEe
Q 048627 523 MPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLD 602 (689)
Q Consensus 523 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~ 602 (689)
+..+++|++|++++|.+ ..+|. +..+++|++|++++|. +..+|.....+|+.|++++|.++.++ .+..+++|+.|+
T Consensus 59 l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp GGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEE
T ss_pred HhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEE
Confidence 44455555566655552 33333 5556666666666554 23333333355666666666665554 356666666666
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCcccc
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
+++|.+ ..++ .++.+++|+.|++++|...+. ..+..+++|+.|++++|.+...|
T Consensus 135 Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 135 IRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCcC-CCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 666665 3333 455666666666666554443 34556666666666666655333
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=6.7e-16 Score=159.81 Aligned_cols=244 Identities=15% Similarity=0.068 Sum_probs=171.1
Q ss_pred EEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCC-----CC-CcC-CceeeecCCCCcccc-CcccccC---
Q 048627 431 LKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPS-----NL-SAE-KLVFLEVPDNNIEQL-GDCVKHY--- 499 (689)
Q Consensus 431 L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~-----~~-~~~-~L~~L~l~~~~i~~l-~~~~~~l--- 499 (689)
+.++.+.+.+.+|..+... .+|++|++++|.+..++. .+ .++ +|++|++++|.+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~-----~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIP-----HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHTSC-----TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHhCC-----CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 5667777777665544443 368999999999888874 33 566 899999999998865 3344443
Q ss_pred --ccchhhccccCccccccCCCCCC----CCCC-CcccEEeccCCCCCcccCcc----CCC-CCCCCEEeccCCCCCCC-
Q 048627 500 --SKLNRIIHAACNKLIAKTPNPTL----MPRL-NKLVFLNLRGSKSLKSLPSE----IFN-LEFLTKLDLSGCSKLKR- 566 (689)
Q Consensus 500 --~~L~~l~l~~~~~l~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~p~~----l~~-l~~L~~L~l~~~~~l~~- 566 (689)
++|++|+++++. + ...+ +.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.....
T Consensus 78 ~~~~L~~L~Ls~n~-l-~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 78 IPANVTSLNLSGNF-L-SYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp SCTTCCEEECCSSC-G-GGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred cCCCccEEECcCCc-C-ChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 889999999875 3 1111 111 3334 78999999999865443333 333 36899999999875421
Q ss_pred ---CCCC---CcCCCcEEEcccccccccCc-----ccccC-CCCCEEecCCCCCCC----CCCcccCC-CCCccEEEeec
Q 048627 567 ---LPEI---SSGNISWLLLRGSAIEELPS-----SIERQ-LRLSWLDLTDCKMFK----SLPSSLCK-LKSLGVLDLHG 629 (689)
Q Consensus 567 ---~p~~---~~~~L~~L~l~~~~l~~l~~-----~i~~l-~~L~~L~l~~~~~~~----~lp~~~~~-l~~L~~L~l~~ 629 (689)
++.. ..++|+.|++++|.++..+. .+..+ ++|++|++++|.+.. .++..+.. .++|++|+|++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 1111 11489999999999875432 34555 599999999998744 25555655 45999999999
Q ss_pred CCCCCccC----cccCCCCCCCEEEccCCCCc--------cccchhhccCCCcEEecCCCCCCCC
Q 048627 630 CSNLRRLP----ECLGQLSSPILLNLAETNIE--------RIPKSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 630 ~~~~~~~p----~~l~~l~~L~~L~l~~~~l~--------~lp~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
|.....-+ ..+..+++|+.|++++|.+. .++..+.++++|+.|++++|++...
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 87665433 34567889999999999833 4455567788899999999998655
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=2.4e-14 Score=134.17 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=92.5
Q ss_pred CCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEE
Q 048627 477 EKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKL 556 (689)
Q Consensus 477 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 556 (689)
.+|++|++++|.+..++ .+..+++|++|+++++. + ..+..+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-A----TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-C----SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-C----CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34455555555554444 34445555555555441 1 112245566777777777777666566667777777777
Q ss_pred eccCCCCCCCCCCCCcCCCcEEEccccccc-ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCc
Q 048627 557 DLSGCSKLKRLPEISSGNISWLLLRGSAIE-ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR 635 (689)
Q Consensus 557 ~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~-~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 635 (689)
++++|. +. ..|..+..+++|++|++++|...+.+| .+..+++|++|++++|...+
T Consensus 118 ~Ls~n~----------------------i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 118 DISHSA----------------------HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp ECCSSB----------------------CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred EecCCc----------------------cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-
Confidence 777654 33 234556777788888888877446665 57778888888888766543
Q ss_pred cCcccCCCCCCCEEEccCCCCc
Q 048627 636 LPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 636 ~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++ .+..+++|+.|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 44 5677788888888887754
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.9e-13 Score=131.23 Aligned_cols=129 Identities=22% Similarity=0.170 Sum_probs=71.8
Q ss_pred CcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcccccccccCcc-cccCCCCCEEe
Q 048627 527 NKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPSS-IERQLRLSWLD 602 (689)
Q Consensus 527 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~ 602 (689)
++|++|+|++|.+.+..|..+..+++|++|++++|.. ..+|... ..+|+.|++++|.++.+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 6677777777776665566677777777777777663 4444321 24455555555555555433 34555555555
Q ss_pred cCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 603 LTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 603 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
+++|.+ ..+|..+..+++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 119 Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554 345555555555555555554443333334455555555555555544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=2.2e-13 Score=129.78 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=95.5
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSK 538 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 538 (689)
.+++.++.++.+|..+. .+|++|++++|.++.++. ..+.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~--------------------------~~~~~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPP--------------------------GAFSPYKKLRRIDLSNNQ 67 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECT--------------------------TSSTTCTTCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCH--------------------------hHhhCCCCCCEEECCCCc
Confidence 45555566666665443 466777776666654322 234556777777777777
Q ss_pred CCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCCcccC
Q 048627 539 SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLPSSLC 617 (689)
Q Consensus 539 ~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp~~~~ 617 (689)
+.+..|..+..+++|++|++++|. ++.+|.. +..+++|++|++++|.+.+..|..+.
T Consensus 68 i~~~~~~~~~~l~~L~~L~Ls~N~----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 68 ISELAPDAFQGLRSLNSLVLYGNK----------------------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp CCEECTTTTTTCSSCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcCHHHhhCCcCCCEEECCCCc----------------------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 655556677777777777777754 3333332 45566777777777776555566677
Q ss_pred CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 618 KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 618 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+++|++|+|++|...+..+..+..+++|+.|++++|++.
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7777777777776665555555666777777777776653
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.8e-13 Score=130.43 Aligned_cols=108 Identities=21% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 573 GNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
.+|+.|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|+|++|...+..|..+..+++|+.|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 3455555555666655 667899999999999999985444445788999999999999988888889999999999999
Q ss_pred cCCCCccccc-hhhccCCCcEEecCCCCCC
Q 048627 652 AETNIERIPK-SIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 652 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l 680 (689)
++|.++.++. .+..+++|+.|++.+|++.
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999998775 4788999999999999874
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=3.7e-13 Score=127.26 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=120.3
Q ss_pred CCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCcc-cccCCCCCEE
Q 048627 526 LNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPSS-IERQLRLSWL 601 (689)
Q Consensus 526 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L 601 (689)
.++|++|++++|.+.+..+..+..+++|++|++++|.. ..+|.. ...+|++|++++|.++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 46899999999986544445578899999999999864 455542 236789999999998887765 5788999999
Q ss_pred ecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchhhccCCCcEEecCCCCCCC
Q 048627 602 DLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 602 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 681 (689)
++++|.+.+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|.+. +.+++|+.|++..|.+.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCc
Confidence 99999886555556788999999999998776555556788899999999988654 345688888888888888
Q ss_pred CCCC
Q 048627 682 SIPK 685 (689)
Q Consensus 682 ~~p~ 685 (689)
.+|.
T Consensus 180 ~ip~ 183 (208)
T 2o6s_A 180 VVRN 183 (208)
T ss_dssp TBBC
T ss_pred eeec
Confidence 8885
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=2.4e-16 Score=171.75 Aligned_cols=191 Identities=20% Similarity=0.130 Sum_probs=130.2
Q ss_pred ceeEEEecCCCCCCCCCCC-CcCCceeeecCCCC--------------ccccCcccccCccchhhccccCccccccCCCC
Q 048627 456 EVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNN--------------IEQLGDCVKHYSKLNRIIHAACNKLIAKTPNP 520 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~--------------i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~ 520 (689)
+|+.|+++++.++.||..+ .+.+|++|++.+|. ....|..+..+.+|+.|+...++.+ ..++..
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhhhh
Confidence 3334444444444444444 44455555554432 2234556677777877773222211 111000
Q ss_pred C----CCCC--CCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccccCccc
Q 048627 521 T----LMPR--LNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEELPSSI 592 (689)
Q Consensus 521 ~----~~~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~i 592 (689)
. .+.. ...|+.|+|++|. +..+|. ++.+++|++|++++|... .+|... +.+|+.|++++|.++.+| .+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 0 0000 1358999999998 455887 999999999999998744 777643 378999999999999998 89
Q ss_pred ccCCCCCEEecCCCCCCCCC-CcccCCCCCccEEEeecCCCCCccCc---ccCCCCCCCEEEc
Q 048627 593 ERQLRLSWLDLTDCKMFKSL-PSSLCKLKSLGVLDLHGCSNLRRLPE---CLGQLSSPILLNL 651 (689)
Q Consensus 593 ~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~---~l~~l~~L~~L~l 651 (689)
+.+++|+.|++++|.+.+.. |..++.+++|+.|+|++|...+..|. .+..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999986665 99999999999999999876655442 1234789999874
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=3.3e-14 Score=139.59 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=136.3
Q ss_pred cCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCC-CCcCCCc
Q 048627 498 HYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE-ISSGNIS 576 (689)
Q Consensus 498 ~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~-~~~~~L~ 576 (689)
.+.++..+.+..+. + .....+..+++|++|++++|. +..+| .+..+++|++|++++|.. ..+|. ..+.+|+
T Consensus 17 ~l~~l~~l~l~~~~-i----~~~~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-V----TDLVSQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSC-T----TSEECHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCC
T ss_pred HHHHHHHHHhcCCC-c----ccccchhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCC
Confidence 45566666666532 2 222256788999999999987 56677 688999999999999874 44443 3347899
Q ss_pred EEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCC
Q 048627 577 WLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNI 656 (689)
Q Consensus 577 ~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 656 (689)
.|++++|.++.+|.... ++|++|++++|.+. .++ .+..+++|++|++++|...+ ++ .++.+++|+.|++++|.+
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 99999999999886444 99999999999984 454 58999999999999987654 44 688899999999999999
Q ss_pred ccccchhhccCCCcEEecCCCCCCCC
Q 048627 657 ERIPKSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 657 ~~lp~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
+.+ ..+..+++|+.|++++|++...
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch-HHhccCCCCCEEeCCCCcccCC
Confidence 987 5788999999999999988754
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1.6e-13 Score=141.75 Aligned_cols=171 Identities=20% Similarity=0.222 Sum_probs=92.0
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCC-CCCcccEEeccCC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMP-RLNKLVFLNLRGS 537 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~-~l~~L~~L~l~~~ 537 (689)
.+++.++.++.+|..+ ...++.|++++|.++.++.. .+. ++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~--------------------------~~~~~l~~L~~L~L~~N 74 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAE--------------------------WTPTRLTNLHSLLLSHN 74 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTT--------------------------SSSSCCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChh--------------------------hhhhcccccCEEECCCC
Confidence 4555555556666544 23466666666666544322 222 5566677777766
Q ss_pred CCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCccc
Q 048627 538 KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSL 616 (689)
Q Consensus 538 ~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~ 616 (689)
.+....|..+..+++|++|+|++|. +..++. .+..+++|++|++++|.+....|..+
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNH----------------------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC----------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCCccChhhccCCCCCCEEECCCCc----------------------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 6444444456666666666666654 222222 24455566666666665544445555
Q ss_pred CCCCCccEEEeecCCCCCccCcc-c---CCCCCCCEEEccCCCCccccc-hhhccCC--CcEEecCCCCC
Q 048627 617 CKLKSLGVLDLHGCSNLRRLPEC-L---GQLSSPILLNLAETNIERIPK-SIIQLFM--LRYLLLNCSEG 679 (689)
Q Consensus 617 ~~l~~L~~L~l~~~~~~~~~p~~-l---~~l~~L~~L~l~~~~l~~lp~-~~~~l~~--L~~L~l~~~~~ 679 (689)
..+++|++|+|++|...+ +|.. + ..+++|+.|++++|.++.+|. .+..++. |+.|++.+|++
T Consensus 133 ~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp TTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 566666666666644332 3332 2 345666666666666665552 3445554 35566666554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=3.3e-13 Score=128.62 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=90.5
Q ss_pred EEEecCCCCCCCCCCCCcCCceeeecCCCCccccCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCC
Q 048627 459 YFHWHGYPLKSLPSNLSAEKLVFLEVPDNNIEQLGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSK 538 (689)
Q Consensus 459 ~l~~~~~~~~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 538 (689)
.+++.++.++.+|..+ ...+++|++++|.++.++. ...+.++++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~-------------------------~~~~~~l~~L~~L~L~~N~ 68 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEA-------------------------TGIFKKLPQLRKINFSNNK 68 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECC-------------------------CCCGGGCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCc-------------------------hhhhccCCCCCEEECCCCc
Confidence 4455555555555543 2234566666665553311 1234556667777777776
Q ss_pred CCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccC
Q 048627 539 SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLC 617 (689)
Q Consensus 539 ~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~ 617 (689)
+.+..+..+..+++|++|++++|. +..++. .+..+++|++|++++|.+.+..|..+.
T Consensus 69 i~~i~~~~~~~l~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 69 ITDIEEGAFEGASGVNEILLTSNR----------------------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC----------------------CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred CCEECHHHhCCCCCCCEEECCCCc----------------------cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 444444456677777777776654 222222 355666777777777776555566667
Q ss_pred CCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 618 KLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 618 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+++|++|+|++|...+..|..+..+++|+.|++++|.+.
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7777777777776666655666667777777777776654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=3.2e-13 Score=125.68 Aligned_cols=127 Identities=21% Similarity=0.175 Sum_probs=63.0
Q ss_pred cEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcc--cccCCCCCEEecCCCC
Q 048627 530 VFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSS--IERQLRLSWLDLTDCK 607 (689)
Q Consensus 530 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~--i~~l~~L~~L~l~~~~ 607 (689)
++++++++. ++.+|..+. .+|++|++++|. ++.++.. +..+++|++|++++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~----------------------i~~~~~~~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNE----------------------LGRISSDGLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSCC----------------------CCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCCc----------------------CCccCCccccccCCCCCEEECCCCC
Confidence 566666665 355665442 256666666654 3333321 4444555555555555
Q ss_pred CCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccc-cchhhccCCCcEEecCCCCCCC
Q 048627 608 MFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERI-PKSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 608 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~ 681 (689)
+.+..|..+..+++|++|+|++|...+..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++..
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 4444444455555555555555444444444444455555555555555422 3344445555555555554443
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=7.4e-13 Score=138.45 Aligned_cols=280 Identities=15% Similarity=0.106 Sum_probs=163.8
Q ss_pred CCCCCcccchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhhccc---cceEEeeeccchhcCCCChH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKISGDF---EGTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~ 134 (689)
..+..|+||+.+++.+.+++... ......+.|+|++|+||||||+.+++.+...+ ...+|+.. ... ....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~-~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQI-DTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHH-CSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCC-CCHH
Confidence 44578999999999999998632 34467899999999999999999999876543 23444442 111 3444
Q ss_pred HHHHHHHHHhcCCCCCC-----cchHHHHHhhc--CCcEEEEEcCCCChH------HHHHHhcCCCC-CCCCceEEeecc
Q 048627 135 WLRQKLLLNLLKDENVI-----PDIDLNFRRLS--RIKILIVFDDVTCFT------QLESLIGSLDW-LTPVSRIIITTR 200 (689)
Q Consensus 135 ~l~~~~l~~~~~~~~~~-----~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~g~~iliTtR 200 (689)
.+...++..+....... .....+.+.+. +++.+|||||++... .+..+...... ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 55555555443221111 22333444443 458999999996532 23333222211 133556777777
Q ss_pred chhhhhhcC-------cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhC---CCchhHHHhhhhhc--
Q 048627 201 NKQVLRNWE-------VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQ---GVPLALKVLGCFLY-- 268 (689)
Q Consensus 201 ~~~~~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~-- 268 (689)
.......+. ....+.+++++.++..+++...+...........+..+.+++.++ |.|..+..+.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 654322211 125899999999999999987642111111122455677777777 99984433322211
Q ss_pred ----C---CCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccC-C---cCHHHH----HHHHHhcCC
Q 048627 269 ----K---REKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFR-G---EGVNLV----MKFFDASGF 333 (689)
Q Consensus 269 ----~---~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~-~---~~~~~l----~~l~~~~~~ 333 (689)
+ -+.+.+..++.... ...+...+..+++..+.++..++.+.. + +....+ ..+....|.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 14455555555432 235666788999998888887775322 1 233322 233322222
Q ss_pred C------chhchhHHhhcCceEEc
Q 048627 334 Y------PEIGINVLVDKSLIAID 351 (689)
Q Consensus 334 ~------~~~~l~~L~~~~li~~~ 351 (689)
. ...+++.|...|+++..
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 23558889999999764
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.5e-12 Score=136.27 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=165.4
Q ss_pred CCCCcccchhhHHHHHHhhcC----CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-cceEEeeeccchhcCCCChHH
Q 048627 61 NKNQLVGVESTVEEIESLLGV----ESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-EGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~----~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 135 (689)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+.+++...... ...+++. .... .....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~-~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIY-RNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTC-CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccC-CCHHH
Confidence 447899999999999998863 122234899999999999999999999876542 2344444 2222 44566
Q ss_pred HHHHHHHHhcCCCCCC-----cchHHHHHhhc--CCcEEEEEcCCCCh--HHHHHHhcCCCCCC----CCceEEeeccch
Q 048627 136 LRQKLLLNLLKDENVI-----PDIDLNFRRLS--RIKILIVFDDVTCF--TQLESLIGSLDWLT----PVSRIIITTRNK 202 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~-----~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~l~~~l~~~~----~g~~iliTtR~~ 202 (689)
+...++..+....... .....+...+. +++.+|||||++.. .....+...+.... .+..||++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 6777776664322111 22233333333 56899999999753 33455544433211 366788887765
Q ss_pred hhhhhcC-------cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHh---------CCCchhHHHhhhh
Q 048627 203 QVLRNWE-------VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYA---------QGVPLALKVLGCF 266 (689)
Q Consensus 203 ~~~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~ 266 (689)
....... ....+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4332221 12379999999999999998775321111122245678888888 7888654433322
Q ss_pred hc------CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc---C--CcCHHHHHHHH----
Q 048627 267 LY------KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF---R--GEGVNLVMKFF---- 328 (689)
Q Consensus 267 l~------~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~---~--~~~~~~l~~l~---- 328 (689)
.. +. +.+....+..... ... +...+..|+++.+.++..++.+. . .+....+...+
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~---~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL---FGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS---CCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh---hhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 21 11 2333333333321 111 22335678888888888777654 2 24444443322
Q ss_pred HhcCC------CchhchhHHhhcCceEEc
Q 048627 329 DASGF------YPEIGINVLVDKSLIAID 351 (689)
Q Consensus 329 ~~~~~------~~~~~l~~L~~~~li~~~ 351 (689)
...+. .....+..|...|+|...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 22221 123558899999999874
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.3e-13 Score=124.16 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=89.7
Q ss_pred EEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCC
Q 048627 555 KLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLR 634 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 634 (689)
+++++++. ++.+|.....+|+.|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|+|++|...+
T Consensus 14 ~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 34444433 34444444455666666667777777778888888888888888766556677888888888888877666
Q ss_pred ccCcccCCCCCCCEEEccCCCCccccch-hhccCCCcEEecCCCCCC
Q 048627 635 RLPECLGQLSSPILLNLAETNIERIPKS-IIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 635 ~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l 680 (689)
..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++.+|++.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666777888888888888888877754 667888888888887764
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=5.5e-15 Score=164.08 Aligned_cols=110 Identities=16% Similarity=0.074 Sum_probs=76.1
Q ss_pred CCCcEEEcc----cccccccC------cccccCCCCCEEecCCCC--CCCCCCcccC-CCCCccEEEeecCCCCC-ccCc
Q 048627 573 GNISWLLLR----GSAIEELP------SSIERQLRLSWLDLTDCK--MFKSLPSSLC-KLKSLGVLDLHGCSNLR-RLPE 638 (689)
Q Consensus 573 ~~L~~L~l~----~~~l~~l~------~~i~~l~~L~~L~l~~~~--~~~~lp~~~~-~l~~L~~L~l~~~~~~~-~~p~ 638 (689)
.+|+.|+++ .+.++..| ..+..+++|++|+++.|. +....+..+. .+++|+.|++++|...+ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 456777774 44454422 225567788888886654 3222222232 37889999999887655 3455
Q ss_pred ccCCCCCCCEEEccCCCCc--cccchhhccCCCcEEecCCCCCCCC
Q 048627 639 CLGQLSSPILLNLAETNIE--RIPKSIIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 639 ~l~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~ 682 (689)
.+..+++|+.|++++|.++ .++..+..+++|+.|++++|++...
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 5678899999999999987 3565667899999999999997654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.4e-13 Score=123.73 Aligned_cols=133 Identities=23% Similarity=0.175 Sum_probs=97.5
Q ss_pred CCcccEEeccCCCCC-cccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecC
Q 048627 526 LNKLVFLNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLT 604 (689)
Q Consensus 526 l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~ 604 (689)
.++|+.|++++|.+. +.+|..+..+++|++|++++|. +..+ ..+..+++|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----------------------LISV-SNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----------------------CCCC-SSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----------------------CCCh-hhhccCCCCCEEECc
Confidence 367888888888854 4778777788888888888765 2333 346667788888888
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCCccccc----hhhccCCCcEEecCCCCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNIERIPK----SIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~ 679 (689)
+|.+.+.+|..+.++++|++|++++|...+. .+..++.+++|+.|++++|.++.+|. .+..+++|+.|++.+|..
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8877666777666788888888888755442 22567778888888888888887776 567788888888888876
Q ss_pred CC
Q 048627 680 HE 681 (689)
Q Consensus 680 l~ 681 (689)
.+
T Consensus 160 ~~ 161 (168)
T 2ell_A 160 QE 161 (168)
T ss_dssp CB
T ss_pred hh
Confidence 54
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.9e-13 Score=121.70 Aligned_cols=128 Identities=21% Similarity=0.138 Sum_probs=104.1
Q ss_pred CCcccEEeccCCCCC-cccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecC
Q 048627 526 LNKLVFLNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLT 604 (689)
Q Consensus 526 l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~ 604 (689)
.++|+.|++++|... +.+|..+..+++|++|++++|. +..+ ..+..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence 477899999998865 5788877888888888888765 2333 456778899999999
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCCccccc----hhhccCCCcEEecCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNIERIPK----SIIQLFMLRYLLLNC 676 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~ 676 (689)
+|.+.+.+|..++.+++|++|++++|...+. .|..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9998776888877899999999999876552 34778889999999999999998776 578899999998864
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=8.6e-12 Score=130.34 Aligned_cols=276 Identities=13% Similarity=0.091 Sum_probs=164.7
Q ss_pred CCCCcccchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcCCCC
Q 048627 61 NKNQLVGVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQRPGG 132 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 132 (689)
.++.++||+.+++++.+++... ....+.+.|+|++|+||||+|+.+++.....+ ...+++. .... .+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~-~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHR-ET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTS-CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcC-CC
Confidence 4578999999999999998532 34567899999999999999999998864431 2233443 2222 45
Q ss_pred hHHHHHHHHHHhcCCCCCC-----cchHHHHHhh--cCCcEEEEEcCCCChHH-------HHHHhcCCCCC--CCCceEE
Q 048627 133 LAWLRQKLLLNLLKDENVI-----PDIDLNFRRL--SRIKILIVFDDVTCFTQ-------LESLIGSLDWL--TPVSRII 196 (689)
Q Consensus 133 ~~~l~~~~l~~~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~--~~g~~il 196 (689)
...+...++..+....... .....+.+.+ .+++.+|||||++.... +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 5666777777765432111 2234444455 35689999999976432 22222221111 3456777
Q ss_pred eeccchhhhhh-----cC--cceEEEcCCCCHHHHHHHHHHhcc---CCCCCChhHHHHHHHHHHHhC---CCchhHH-H
Q 048627 197 ITTRNKQVLRN-----WE--VRKIYEVEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYAQ---GVPLALK-V 262 (689)
Q Consensus 197 iTtR~~~~~~~-----~~--~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Plal~-~ 262 (689)
.||+....... .. ....+.+++++.++..+++...+. ...... .+..+.+++.++ |.|..+. .
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 77766522111 11 115789999999999999988752 111111 234667778887 9995332 2
Q ss_pred hhhhh---c--C---CCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccCC---cCHHH----HHHH
Q 048627 263 LGCFL---Y--K---REKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFRG---EGVNL----VMKF 327 (689)
Q Consensus 263 ~~~~l---~--~---~~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~---~~~~~----l~~l 327 (689)
+..+. . + -+.+.+..++.... ...+..++..+++.++..+..++.+..+ +.... ...+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22211 1 1 14566666665542 2345667889999998888777744323 23332 2223
Q ss_pred HHhcCC------CchhchhHHhhcCceEEc
Q 048627 328 FDASGF------YPEIGINVLVDKSLIAID 351 (689)
Q Consensus 328 ~~~~~~------~~~~~l~~L~~~~li~~~ 351 (689)
....+. .....++.|...|+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 322222 123458889999999874
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=1.4e-14 Score=160.73 Aligned_cols=254 Identities=15% Similarity=0.059 Sum_probs=147.5
Q ss_pred hhCCCCcceEEeccccCCCC----CcccccccCcccccceeEEEecCCCCCCCC-----CCC-CcCCceeeecCCCCccc
Q 048627 422 FTKMCKLRFLKFYSSSFNGE----NKCKVSYLQDPAFAEVKYFHWHGYPLKSLP-----SNL-SAEKLVFLEVPDNNIEQ 491 (689)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp-----~~~-~~~~L~~L~l~~~~i~~ 491 (689)
...+++|+.|++++|.+.+. ++..+..+ .+|+.|++.++.+..+. ..+ .+++|++|++.+|.+..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHN-----TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHC-----CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcC-----CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 45788999999998876554 22223334 37788888887765332 222 46889999999988888
Q ss_pred cCcccccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCC-CCC-
Q 048627 492 LGDCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKR-LPE- 569 (689)
Q Consensus 492 l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~-~p~- 569 (689)
++..+..+++|+.|.+..........+....+..+++|+.|+++++. ...+|..+..+++|++|++++|..... ++.
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 88778888888888887533221112233455666667777766543 445555555666777777776652110 000
Q ss_pred -CCc------------------------CCCcEEEccc-----------cccc--ccCcccccCCCCCEEecCCCCCCCC
Q 048627 570 -ISS------------------------GNISWLLLRG-----------SAIE--ELPSSIERQLRLSWLDLTDCKMFKS 611 (689)
Q Consensus 570 -~~~------------------------~~L~~L~l~~-----------~~l~--~l~~~i~~l~~L~~L~l~~~~~~~~ 611 (689)
..+ ++|+.|++++ +.++ .++.....+++|++|+++.|.+.+.
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 111 3455555551 2332 1222233456666666655554443
Q ss_pred CCcccCC-CCCccEEEeec---CCCCCcc------CcccCCCCCCCEEEccCCC--Cc-cccchh-hccCCCcEEecCCC
Q 048627 612 LPSSLCK-LKSLGVLDLHG---CSNLRRL------PECLGQLSSPILLNLAETN--IE-RIPKSI-IQLFMLRYLLLNCS 677 (689)
Q Consensus 612 lp~~~~~-l~~L~~L~l~~---~~~~~~~------p~~l~~l~~L~~L~l~~~~--l~-~lp~~~-~~l~~L~~L~l~~~ 677 (689)
.+..++. +++|++|++++ |+.++.. +..+..+++|+.|+++.|. ++ ..+..+ ..+++|+.|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 3334443 66777777763 2333332 2224457778888886543 44 223334 34788888888888
Q ss_pred CCCC
Q 048627 678 EGHE 681 (689)
Q Consensus 678 ~~l~ 681 (689)
.+.+
T Consensus 474 ~l~~ 477 (592)
T 3ogk_B 474 GESD 477 (592)
T ss_dssp CSSH
T ss_pred CCCH
Confidence 7653
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=3e-14 Score=160.27 Aligned_cols=220 Identities=12% Similarity=0.105 Sum_probs=87.8
Q ss_pred CcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccCcccccCccchhh
Q 048627 427 KLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLGDCVKHYSKLNRI 505 (689)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~l 505 (689)
.++.|.+.++.+... +..+-...++....+..+.+..+.+...|..+ .+..|+.|++++|.+..++..+..+.+|++|
T Consensus 174 ~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 345555555544332 22222222222223333333344444445555 6677888888888877777666666666666
Q ss_pred ccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccc
Q 048627 506 IHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAI 585 (689)
Q Consensus 506 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l 585 (689)
+++++. + ..+ +..++++++|++|+|++|.+. .+|..++.+++|++|+|++ |.+
T Consensus 253 ~Ls~N~-l-~~l--p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~----------------------N~l 305 (727)
T 4b8c_D 253 YLNGNS-L-TEL--PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD----------------------NMV 305 (727)
T ss_dssp BCTTSC-C-SCC--CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS----------------------SCC
T ss_pred EeeCCc-C-ccc--ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC----------------------CCC
Confidence 666543 2 222 234566666666666666633 5566666666666666655 445
Q ss_pred cccCcccccCCCCCEEecCCCCCCCCCCcccCCCC-CccEEEeecCCCCCccCcccCCCCCCCEEEccCC--------CC
Q 048627 586 EELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLK-SLGVLDLHGCSNLRRLPECLGQLSSPILLNLAET--------NI 656 (689)
Q Consensus 586 ~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~--------~l 656 (689)
+.+|..++.+++|++|+|++|.+.+.+|..+..+. .+..|++++|...+.+|.. |..|+++.| .+
T Consensus 306 ~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l 379 (727)
T 4b8c_D 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSL 379 (727)
T ss_dssp CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------------------
T ss_pred CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCc
Confidence 55666677777777777777777666666554432 1223566776666666543 444445544 12
Q ss_pred c-cccchhhccCCCcEEecCCCCCC
Q 048627 657 E-RIPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 657 ~-~lp~~~~~l~~L~~L~l~~~~~l 680 (689)
. ..+..+.++..+....+++|.+.
T Consensus 380 ~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 380 QQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------CCC
T ss_pred cccccchhhcccccceeeeeccccc
Confidence 2 11222344455555566666553
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=1.7e-12 Score=133.91 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=111.3
Q ss_pred cEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC----CcCCCcEEEcccccccccCc-ccccCCCCCEEecC
Q 048627 530 VFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI----SSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLT 604 (689)
Q Consensus 530 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~----~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~ 604 (689)
+.++++++. +..+|..+ ...++.|++++|.. ..++.. ...+|+.|++++|.+..++. .+..+++|++|+++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 455555544 44455543 23466666666553 222221 23566777777777777764 58899999999999
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchh----hccCCCcEEecCCCCCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSI----IQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~l 680 (689)
+|.+....+..+..+++|++|+|++|......|..+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99986655667899999999999999888777889999999999999999999999775 57999999999999887
Q ss_pred C
Q 048627 681 E 681 (689)
Q Consensus 681 ~ 681 (689)
.
T Consensus 177 ~ 177 (361)
T 2xot_A 177 K 177 (361)
T ss_dssp C
T ss_pred c
Confidence 4
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=3.3e-12 Score=122.52 Aligned_cols=153 Identities=20% Similarity=0.169 Sum_probs=128.7
Q ss_pred cccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCC--CcCCCcEEEcccccccccCcc-cccCCCCCEEecC
Q 048627 528 KLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLT 604 (689)
Q Consensus 528 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~ 604 (689)
..+.++.+++. +..+|..+ .++|++|++++|......|.. ...+|+.|++++|.+..+|.. +..+++|++|+++
T Consensus 20 s~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 35678888766 77888765 489999999999866554543 247899999999999998865 6899999999999
Q ss_pred CCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccc-hhhccCCCcEEecCCCCCCCCC
Q 048627 605 DCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPK-SIIQLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 605 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~ 683 (689)
+|.+....+..+..+++|++|++++|... .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++.+|++....
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99986555566789999999999997755 889999999999999999999998885 4788999999999999987665
Q ss_pred C
Q 048627 684 P 684 (689)
Q Consensus 684 p 684 (689)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.2e-13 Score=155.22 Aligned_cols=148 Identities=22% Similarity=0.314 Sum_probs=84.5
Q ss_pred CCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccccCcccccCCCC
Q 048627 521 TLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEELPSSIERQLRL 598 (689)
Q Consensus 521 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~i~~l~~L 598 (689)
..+..+++|+.|+|++|.+ ..+|..+..+++|++|+|++|... .+|... +.+|+.|+|++|.++.+|..++.+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3566778888888888874 477777778888888888877633 555422 245566666666666666666666666
Q ss_pred CEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCC-CCEEEccCCCCc-cccchhhccCCCcEEecCC
Q 048627 599 SWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSS-PILLNLAETNIE-RIPKSIIQLFMLRYLLLNC 676 (689)
Q Consensus 599 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~ 676 (689)
++|+|++|.+ +.+|..++++++|++|+|++|...+.+|..+..+.. +..|++++|.++ .+| ..|+.|+++.
T Consensus 296 ~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~ 368 (727)
T 4b8c_D 296 KYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINT 368 (727)
T ss_dssp SEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC--------
T ss_pred CEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeec
Confidence 6666666655 466666666666666666666666666555433211 122455566555 344 2455556665
Q ss_pred C
Q 048627 677 S 677 (689)
Q Consensus 677 ~ 677 (689)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 5
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=4.1e-12 Score=116.61 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=68.2
Q ss_pred ccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCC
Q 048627 529 LVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCK 607 (689)
Q Consensus 529 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~ 607 (689)
.+.++++++. +..+|..+ .++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNK----------------------LQSLPHGVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC----------------------CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc----------------------ccEeCHHHhcCcccccEEECCCCc
Confidence 3556665554 44455433 3456666666554 443333 23455556666665555
Q ss_pred CCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCccccchh-hccCCCcEEecCCCCCCCCCC
Q 048627 608 MFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPKSI-IQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 608 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~p 684 (689)
+.+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.+|..+ ..+++|+.|++++|++.+..|
T Consensus 64 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 53333333455556666666555544433334455556666666666555555442 445556666666665555433
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=5e-12 Score=123.01 Aligned_cols=193 Identities=15% Similarity=0.076 Sum_probs=117.8
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee---------------c
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN---------------V 123 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~---------------~ 123 (689)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.+...+.....-+. .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 3345579999999999999986322 23578999999999999999999886543311100000 0
Q ss_pred cchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCC--hHHHHHHhcCCCCCCCCceEEeeccc
Q 048627 124 RVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 124 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~g~~iliTtR~ 201 (689)
................++..+... ...+++.+||+||++. ...+..+...+.....+..+|+||+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 98 IEIDAASRTKVEDTRDLLDNVQYA------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp EEEETTCGGGHHHHHHHHHSCCCS------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred EEecCcccccHHHHHHHHHHhhhc------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 000000000011111111111100 0235679999999965 44455555544434567788888876
Q ss_pred hhhh-h-hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhh
Q 048627 202 KQVL-R-NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCF 266 (689)
Q Consensus 202 ~~~~-~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 266 (689)
.... . .......+++++++.++..+++...+...... -..+..+.+++.++|+|..+..+...
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5322 1 12334689999999999999998876433221 12456788999999999988766543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.3e-12 Score=117.11 Aligned_cols=130 Identities=19% Similarity=0.131 Sum_probs=85.7
Q ss_pred CCCCCcccEEeccCCCCCcccCccCCCCC-CCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEE
Q 048627 523 MPRLNKLVFLNLRGSKSLKSLPSEIFNLE-FLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWL 601 (689)
Q Consensus 523 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L 601 (689)
+.++.+|+.|++++|.+ ..+|. +..+. +|++|++++ |.++.+ ..+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~----------------------N~l~~~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSD----------------------NEIRKL-DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCS----------------------SCCCEE-CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCC----------------------CCCCcc-cccccCCCCCEE
Confidence 34556677777776663 34443 33333 566666555 444444 456677778888
Q ss_pred ecCCCCCCCCCCcc-cCCCCCccEEEeecCCCCCccCc--ccCCCCCCCEEEccCCCCccccch----hhccCCCcEEec
Q 048627 602 DLTDCKMFKSLPSS-LCKLKSLGVLDLHGCSNLRRLPE--CLGQLSSPILLNLAETNIERIPKS----IIQLFMLRYLLL 674 (689)
Q Consensus 602 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l 674 (689)
++++|.+. .+|.. ++.+++|++|++++|.. +.+|. .++.+++|+.|++++|.+..+|.. +..+++|+.|++
T Consensus 70 ~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 70 LVNNNRIC-RIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ECCSSCCC-EECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ECCCCccc-ccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 88877764 44443 36777888888877654 55555 677778888888888888777764 677888888888
Q ss_pred CCCCC
Q 048627 675 NCSEG 679 (689)
Q Consensus 675 ~~~~~ 679 (689)
++|..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 77764
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.4e-11 Score=114.48 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=83.6
Q ss_pred hhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCc-cCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcc
Q 048627 503 NRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLR 581 (689)
Q Consensus 503 ~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 581 (689)
+.+++++. .+ ..+|. .+. .+|+.|++++|.+.+..+. .++.+++|++|++++|......
T Consensus 11 ~~l~~s~~-~l-~~ip~--~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 70 (192)
T 1w8a_A 11 TTVDCTGR-GL-KEIPR--DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-------------- 70 (192)
T ss_dssp TEEECTTS-CC-SSCCS--CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--------------
T ss_pred CEEEcCCC-Cc-CcCcc--CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--------------
Confidence 45566554 34 45543 232 3899999999985444333 3788999999999887643322
Q ss_pred cccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 582 GSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 582 ~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..|..++.+++|+.|++++|.+.
T Consensus 71 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 71 -------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -------TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -------HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 344566667777777777665555555666777777777776666666666666777777777776654
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=5.5e-14 Score=156.14 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=38.6
Q ss_pred CCCccEEEeecCCCCCccCccc-CCCCCCCEEEccCCCCcc--ccchhhccCCCcEEecCCCCC
Q 048627 619 LKSLGVLDLHGCSNLRRLPECL-GQLSSPILLNLAETNIER--IPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 619 l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~ 679 (689)
+++|+.|++++|...+..+..+ ..+++|+.|++++|.++. ++..+.++++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5667777777766544433333 446777777777777752 223345577777777777776
No 139
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=1e-11 Score=112.79 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCcEEEccccccc--ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEE
Q 048627 573 GNISWLLLRGSAIE--ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLN 650 (689)
Q Consensus 573 ~~L~~L~l~~~~l~--~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 650 (689)
.+|+.|++++|.+. .+|..+..+++|++|++++|.+.. + ..++.+++|++|++++|...+.+|..++.+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44566666666666 778888999999999999999754 4 7789999999999999998887888888899999999
Q ss_pred ccCCCCcccc--chhhccCCCcEEecCCCCCCCCCC
Q 048627 651 LAETNIERIP--KSIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 651 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
+++|.++.+| ..+..+++|+.|++++|++.+..+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 9999999876 678999999999999999876543
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=8e-12 Score=111.04 Aligned_cols=109 Identities=20% Similarity=0.171 Sum_probs=93.6
Q ss_pred CCCcEEEccccccc--ccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEE
Q 048627 573 GNISWLLLRGSAIE--ELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLN 650 (689)
Q Consensus 573 ~~L~~L~l~~~~l~--~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 650 (689)
.+++.|++++|.+. .+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|...+.+|..++.+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666667776 7788889999999999999988544 7789999999999999988887888888899999999
Q ss_pred ccCCCCcccc--chhhccCCCcEEecCCCCCCCCC
Q 048627 651 LAETNIERIP--KSIIQLFMLRYLLLNCSEGHESI 683 (689)
Q Consensus 651 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~ 683 (689)
+++|.++.+| ..+..+++|+.|++++|++.+..
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 9999999765 78899999999999999886643
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=4.1e-11 Score=114.65 Aligned_cols=187 Identities=13% Similarity=0.133 Sum_probs=114.9
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
|.....++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++.+........++... .+.. .....+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDE-RGIDVVRH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCT-TCHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccc-cChHHHHH
Confidence 344567999999999999999643 233489999999999999999998864332222222210 1111 22222222
Q ss_pred HHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchhhh-h-hcCcceEE
Q 048627 139 KLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQVL-R-NWEVRKIY 214 (689)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~~~-~-~~~~~~~~ 214 (689)
.+ ....... .....++.+||+||++.. ...+.+...+.....+.++|+||+..... . .......+
T Consensus 88 ~~-~~~~~~~----------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 88 KI-KEFARTA----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HH-HHHHTSC----------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HH-HHHhccc----------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 22 1111110 011357889999999753 33444444333335677888888765321 1 12233589
Q ss_pred EcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHh
Q 048627 215 EVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVL 263 (689)
Q Consensus 215 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 263 (689)
.+.+++.++..+++...+...... -..+..+.+++.++|+|..+..+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999998876322211 12456778889999999865443
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.25 E-value=8.3e-14 Score=154.67 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=30.1
Q ss_pred CCCccEEEeecCCCCCccCcccC-CCCCCCEEEcc--C----CCCcccc------chhhccCCCcEEecCC
Q 048627 619 LKSLGVLDLHGCSNLRRLPECLG-QLSSPILLNLA--E----TNIERIP------KSIIQLFMLRYLLLNC 676 (689)
Q Consensus 619 l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~--~----~~l~~lp------~~~~~l~~L~~L~l~~ 676 (689)
+++|++|.++.+......+..+. .+++|+.|+++ + +.++..| ..+.++++|+.|++++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 55666665554444333333332 35667777776 2 3444322 1245566777777755
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=6.3e-11 Score=107.61 Aligned_cols=105 Identities=24% Similarity=0.215 Sum_probs=70.2
Q ss_pred CCCEEeccCCCCCCCCCCCCcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecC
Q 048627 552 FLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGC 630 (689)
Q Consensus 552 ~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 630 (689)
..+.++++++. ++.+|.....+|+.|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|+|++|
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 35677777755 5556665556777777777777766 445677777777777777765444444567777777777776
Q ss_pred CCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 631 SNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 631 ~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
...+..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 655444445677777777777777655
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=6.2e-11 Score=107.99 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=62.2
Q ss_pred CEEeccCCCCCCCCCCCCcCCCcEEEccccccccc-CcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCC
Q 048627 554 TKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSN 632 (689)
Q Consensus 554 ~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 632 (689)
+.++++++. ++.+|.....+|+.|++++|.+..+ |..+..+++|++|++++|.+.+..+..+..+++|++|+|++|..
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 566666654 4556655556666666666666655 34566666666666666665332223345666666666666554
Q ss_pred CCccCcccCCCCCCCEEEccCCCCccc
Q 048627 633 LRRLPECLGQLSSPILLNLAETNIERI 659 (689)
Q Consensus 633 ~~~~p~~l~~l~~L~~L~l~~~~l~~l 659 (689)
.+..+..+..+++|+.|++++|.+...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 433333466666666666666666533
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=2e-10 Score=106.57 Aligned_cols=106 Identities=23% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCCEEeccCCCCCCCCCCCC--cCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEe
Q 048627 551 EFLTKLDLSGCSKLKRLPEIS--SGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDL 627 (689)
Q Consensus 551 ~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 627 (689)
++|++|++++|. +..+|... ..+|+.|++++|.++.++. .+..+++|++|++++|.+....|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 344555554443 22333211 1344555555555665543 4778888899999988886666667888889999999
Q ss_pred ecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 628 HGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 628 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++|......+..+..+++|+.|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887766544456788888999999888764
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.2e-11 Score=110.44 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=96.5
Q ss_pred ccccCccchhhccccCccccccCCCCCCCCCCC-cccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcC
Q 048627 495 CVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLN-KLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG 573 (689)
Q Consensus 495 ~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~ 573 (689)
.+..+.+|+.|+++++. + ..++ .+..+. +|++|++++|.+.+ + ..++.+++|++|++++|.
T Consensus 14 ~~~~~~~L~~L~l~~n~-l-~~i~---~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~----------- 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-I-PVIE---NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNR----------- 75 (176)
T ss_dssp EEECTTSCEEEECTTSC-C-CSCC---CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSC-----------
T ss_pred hcCCcCCceEEEeeCCC-C-chhH---HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCc-----------
Confidence 35568899999999874 3 3333 455555 99999999998544 4 457788888888888754
Q ss_pred CCcEEEcccccccccCccc-ccCCCCCEEecCCCCCCCCCCc--ccCCCCCccEEEeecCCCCCccCcc----cCCCCCC
Q 048627 574 NISWLLLRGSAIEELPSSI-ERQLRLSWLDLTDCKMFKSLPS--SLCKLKSLGVLDLHGCSNLRRLPEC----LGQLSSP 646 (689)
Q Consensus 574 ~L~~L~l~~~~l~~l~~~i-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L 646 (689)
++.+|..+ ..+++|++|++++|.+ +.+|. .++.+++|++|++++|... .+|.. ++.+++|
T Consensus 76 -----------l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 76 -----------ICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp -----------CCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred -----------ccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 44444443 7788888888888876 66665 6778888888888887654 55653 7778888
Q ss_pred CEEEccCCCCc
Q 048627 647 ILLNLAETNIE 657 (689)
Q Consensus 647 ~~L~l~~~~l~ 657 (689)
+.|++++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 88888888765
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=5.8e-13 Score=124.76 Aligned_cols=131 Identities=20% Similarity=0.110 Sum_probs=93.8
Q ss_pred ccCCCCCCCCEEeccCCCCCCCCCCCC-cCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCcc
Q 048627 545 SEIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLG 623 (689)
Q Consensus 545 ~~l~~l~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 623 (689)
..++.+++|++|++++|. +..+|... +.+|+.|++++|.+..+|..+..+++|++|++++|.+. .+| .++.+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCC
Confidence 366677777777777765 33355211 25677777777888888887778888999999998874 455 577888999
Q ss_pred EEEeecCCCCCccC-cccCCCCCCCEEEccCCCCccc-cc----------hhhccCCCcEEecCCCCCC
Q 048627 624 VLDLHGCSNLRRLP-ECLGQLSSPILLNLAETNIERI-PK----------SIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 624 ~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~l-p~----------~~~~l~~L~~L~l~~~~~l 680 (689)
+|++++|.....-+ ..+..+++|+.|++++|.+... |. .+..+++|+.|+ ++++.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99999876554221 3678889999999999988743 22 267889999887 55554
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=7.5e-10 Score=101.37 Aligned_cols=111 Identities=22% Similarity=0.147 Sum_probs=80.1
Q ss_pred CCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCC
Q 048627 526 LNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTD 605 (689)
Q Consensus 526 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~ 605 (689)
.++|+.|++++|.+.+..+..+..+++|++|++++|.. ..+|. ..+..+++|++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--------------------~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPD--------------------GVFDKLTKLTILYLHE 85 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCT--------------------TTTTTCTTCCEEECCS
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeCh--------------------hHccCCCccCEEECCC
Confidence 37899999999986544444567889999999988652 23322 2356777888888888
Q ss_pred CCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 606 CKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 606 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
|.+.+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 8875555555678888888888887665443444577888888888888876
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.7e-10 Score=117.09 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=112.9
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccc-eEEeeeccchhcCCCChHHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEG-TCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~ 137 (689)
.....++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.+... +.. .+++. .+.. .....+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~-~~~~~i- 89 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDD-RGIDVV- 89 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSC-CSHHHH-
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----Cccc-cChHHH-
Confidence 34467999999999999999643 23338899999999999999999986432 222 22222 1111 222222
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhh-cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchhh-hhh-cCcce
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRL-SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRN-WEVRK 212 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~~-~~~-~~~~~ 212 (689)
+.....+.... ..+ .+++.++|+||++.. .....+...+.....++.+|+||+...- ... .....
T Consensus 90 ~~~~~~~~~~~----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 90 RNQIKHFAQKK----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HTHHHHHHHBC----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHHhcc----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 22222211000 011 345889999999753 3344444333333466778888766432 111 23345
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh-HHHhh
Q 048627 213 IYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA-LKVLG 264 (689)
Q Consensus 213 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 264 (689)
.+++.+++.++..+++...+...+.. -..+....+++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999999998775322211 1245678899999999964 44443
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=7e-10 Score=100.64 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccC
Q 048627 574 NISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAE 653 (689)
Q Consensus 574 ~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 653 (689)
..+.++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|...+..+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34566666666666665542 5666666666666554455566666666666666554443334455666666666666
Q ss_pred CCCccccch-hhccCCCcEEecCCCCCCCC
Q 048627 654 TNIERIPKS-IIQLFMLRYLLLNCSEGHES 682 (689)
Q Consensus 654 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~ 682 (689)
|.++.+|.. +.++++|+.|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 666655543 55566666666666665543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=8.1e-10 Score=100.57 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=49.4
Q ss_pred cEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCC
Q 048627 576 SWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETN 655 (689)
Q Consensus 576 ~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 655 (689)
+.++++++.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|+|++|...+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554442 455555555555444444445555555555555543333222233445555555555555
Q ss_pred Cccccch-hhccCCCcEEecCCCCCC
Q 048627 656 IERIPKS-IIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 656 l~~lp~~-~~~l~~L~~L~l~~~~~l 680 (689)
++.+|.. +..+++|+.|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 5544433 444555555555555443
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.8e-10 Score=112.85 Aligned_cols=209 Identities=12% Similarity=0.091 Sum_probs=116.2
Q ss_pred cceeEEEecCCCCC--CCCCCCCcCCceeeecCCCCccccCccccc--------CccchhhccccCccccccCCCCCCCC
Q 048627 455 AEVKYFHWHGYPLK--SLPSNLSAEKLVFLEVPDNNIEQLGDCVKH--------YSKLNRIIHAACNKLIAKTPNPTLMP 524 (689)
Q Consensus 455 ~~L~~l~~~~~~~~--~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~--------l~~L~~l~l~~~~~l~~~~~~~~~~~ 524 (689)
.+|+.|+++++.+. ..+... +..+..+.+..+.+. ...+.. +.+|+.+.+.. .+ ..++ ...|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~--~i-~~I~-~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE--KI-KNIE-DAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT--TC-CEEC-TTTTT
T ss_pred ccCeEEecCcceeEEecCcccc-ccccccccccccccC--HHHhcccccccccccCCCcEEECCc--cc-cchh-HHHhh
Confidence 46777777777665 222111 111333333333221 122444 77777777776 23 3444 24677
Q ss_pred CCCcccEEeccCCCCCcccCccCCCCCCCCEEeccC-----------------CCCCC---------CCCC---------
Q 048627 525 RLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSG-----------------CSKLK---------RLPE--------- 569 (689)
Q Consensus 525 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~-----------------~~~l~---------~~p~--------- 569 (689)
++++|+.+++.+|.....-+..+..+.++..+.... |..++ .+|.
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 778888888877764433333444444444444332 11111 0000
Q ss_pred ----------C-----------CcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCCCCCCC-cccCCCCCcc-EE
Q 048627 570 ----------I-----------SSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKMFKSLP-SSLCKLKSLG-VL 625 (689)
Q Consensus 570 ----------~-----------~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~-~L 625 (689)
. .+.+|+.|++.+|.+..+|.. +..+.+|+.|++.+| + ..++ ..|.++++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEE
Confidence 0 024677777777777777653 666777777777776 3 3343 3566777777 77
Q ss_pred EeecCCCCCccCcccCCCCCCCEEEccCCCCccccc-hhhccCCCcEEe
Q 048627 626 DLHGCSNLRRLPECLGQLSSPILLNLAETNIERIPK-SIIQLFMLRYLL 673 (689)
Q Consensus 626 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~ 673 (689)
.+.+ .....-+.+|.++++|+.+++.+|+++.++. .+.++++|+.+.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7766 3322233567777777777777777776664 456677777765
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=1e-09 Score=111.52 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=112.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-cc-eEEeeeccchhcCCCChHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-EG-TCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 136 (689)
|.....++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.+.... .. .+.+. ....... ..+...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGI-NVIREK 96 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHH-HTTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCch-HHHHHH
Confidence 344567999999999999998643 333589999999999999999999864332 11 22222 1110000 001111
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchhh-hhh-cCcce
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRN-WEVRK 212 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~~-~~~-~~~~~ 212 (689)
...+.. .. ....+++.++|+||++.. .....+...+.....++++|+||..... ... .....
T Consensus 97 ~~~~~~---~~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFAR---TK-----------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHH---SC-----------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHh---hC-----------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111110 00 011256789999999753 3344554444334567788888866532 111 11234
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 213 IYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 213 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
.+.+.+++.++..+++...+...+. .-..+..+.+++.++|.|..+..+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 7899999999999999877633222 1224567888999999998654433
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=1.8e-08 Score=102.09 Aligned_cols=257 Identities=15% Similarity=0.112 Sum_probs=145.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcC---CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV---ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|.....++|++..++.+..++.. .......|.|+|++|+|||++|+.+++.....| +++. . ... .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~-~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAI-EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTC-CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---ccc-CChHH
Confidence 34567899999999998888752 112345788999999999999999998875322 2222 1 111 11112
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCC------------------CCCceE
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWL------------------TPVSRI 195 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~g~~i 195 (689)
+.. .+.. . ..++.+|+|||++... ....+...+... .+...+
T Consensus 80 l~~----~l~~-------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 LAA----ILAN-------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHH----HHTT-------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred HHH----HHHH-------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111 1111 0 1345689999997642 223232211100 123456
Q ss_pred Eeeccchh-hhhh-cC-cceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhcC---
Q 048627 196 IITTRNKQ-VLRN-WE-VRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLYK--- 269 (689)
Q Consensus 196 liTtR~~~-~~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~--- 269 (689)
|.||.... +... .. ....+.+.+++.++..+++...+...... -..+....+++.++|+|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 66665432 1111 11 23589999999999999988876432221 22456788999999999877665544321
Q ss_pred ---C---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc--CCcCHHHHHHHHHhcCCCchhchhH
Q 048627 270 ---R---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF--RGEGVNLVMKFFDASGFYPEIGINV 341 (689)
Q Consensus 270 ---~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~--~~~~~~~l~~l~~~~~~~~~~~l~~ 341 (689)
. +.+....++..+ ......+++.++..+..+.... ..+....+++.++.........++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred HhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 1 233333333322 1224567777777776655332 2355666666654322122222333
Q ss_pred -HhhcCceEEccCCe
Q 048627 342 -LVDKSLIAIDSYNK 355 (689)
Q Consensus 342 -L~~~~li~~~~~~~ 355 (689)
+++.+++.....++
T Consensus 288 ~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHTTSEEEETTEE
T ss_pred HHHHhcchhcCCccc
Confidence 77889998765444
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=4.9e-12 Score=118.38 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCCcEEEcccccccccCcccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEcc
Q 048627 573 GNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLA 652 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 652 (689)
.+|++|++++|.+..+| .+..+++|++|++++|.+ ..+|..+..+++|++|++++|...+ +| .++.+++|+.|+++
T Consensus 48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 68999999999999998 899999999999999987 4788888888999999999986654 66 57888999999999
Q ss_pred CCCCccccc--hhhccCCCcEEecCCCCCCCCCC
Q 048627 653 ETNIERIPK--SIIQLFMLRYLLLNCSEGHESIP 684 (689)
Q Consensus 653 ~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p 684 (689)
+|.++.++. .+..+++|+.|++++|++.+.+|
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 999997765 68899999999999999865533
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=4e-09 Score=108.15 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=52.1
Q ss_pred EEeccCCCCCCCCCCCCc--CCCcEEEccc-ccccccC-cccccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecC
Q 048627 555 KLDLSGCSKLKRLPEISS--GNISWLLLRG-SAIEELP-SSIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGC 630 (689)
Q Consensus 555 ~L~l~~~~~l~~~p~~~~--~~L~~L~l~~-~~l~~l~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 630 (689)
.+++++++.+..+|. .. .+|+.|+|++ |.++.+| ..+..+++|+.|+|++|.+.+..|..|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555433555555 21 3356666653 5555555 24555666666666666554444445555666666666655
Q ss_pred CCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 631 SNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 631 ~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.+.+..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44432222333333 666666655554
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.90 E-value=2.8e-08 Score=100.40 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=112.7
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-cccc-eEEeeeccchhcCCCChHHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-DFEG-TCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~~l~ 137 (689)
.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. ....... ..+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 89 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGI-DVVRHKI 89 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCT-TTSSHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccCh-HHHHHHH
Confidence 34457999999999999998643 3334889999999999999999998632 2221 22222 1111000 1111221
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhh-cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-hhhh-cCcce
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRL-SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WEVRK 212 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~~~~-~~~~~ 212 (689)
..+... . .+ .+++.++|+||++.. .....+...+.....++.+|+||.... +... .....
T Consensus 90 ~~~~~~---~------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 90 KEFART---A------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp HHHHHS---C------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred HHHHhc---C------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 111100 0 01 256789999999753 345556666655556777887776543 1111 23345
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 213 IYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 213 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
.+++.+++.++..+++...+...+.. -..+....+++.++|.+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999999998776332221 2245677888999999976543
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=1.4e-08 Score=103.18 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=76.5
Q ss_pred CCCCCEEeccCCCCCCCCCCCCc---CCCcEEEcccccccccCc-ccccCCCCC-EEecCCCCCCCCCCcccCCCCCccE
Q 048627 550 LEFLTKLDLSGCSKLKRLPEISS---GNISWLLLRGSAIEELPS-SIERQLRLS-WLDLTDCKMFKSLPSSLCKLKSLGV 624 (689)
Q Consensus 550 l~~L~~L~l~~~~~l~~~p~~~~---~~L~~L~l~~~~l~~l~~-~i~~l~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~ 624 (689)
+++|+.+++++|. +..+|...+ .+|+.|++..+ +..++. .+..+.+|+ .+++.+ .+..--+..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 6789999998766 666766543 57889999887 777765 478899999 999988 443333567889999999
Q ss_pred EEeecCCCCCccCcccCCCCCCCEEEc
Q 048627 625 LDLHGCSNLRRLPECLGQLSSPILLNL 651 (689)
Q Consensus 625 L~l~~~~~~~~~p~~l~~l~~L~~L~l 651 (689)
|+++++.....-+..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999886655555568889999999874
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.87 E-value=1.5e-08 Score=104.97 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
.....++|++..++.+.+.+..+. ....+.|+|++|+||||+|+.+++.+....... ... . ..... ...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-~-------~~~~~-~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-C-------GVCDN-CRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-C-------SSSHH-HHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-C-------cccHH-HHH
Confidence 345679999999999999986332 245788999999999999999998864321100 000 0 00000 000
Q ss_pred HHHH-------hcCC-CCCCcchHHHHHhh-----cCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-
Q 048627 140 LLLN-------LLKD-ENVIPDIDLNFRRL-----SRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ- 203 (689)
Q Consensus 140 ~l~~-------~~~~-~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~- 203 (689)
+... +... ......+..+.+.+ .+++.++|+||++.. .....+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 0000 01112223333332 256789999999653 334555444433345666777765442
Q ss_pred hhh-hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 204 VLR-NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 204 ~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
+.. .......+++.+++.++..+++...+...+.. ...+....+++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 12334789999999999999998765322211 124557789999999998765544
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=2.7e-10 Score=117.25 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=72.9
Q ss_pred CcccEEeccCCCCCcccC----ccCC-CCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccc-----cCccc-
Q 048627 527 NKLVFLNLRGSKSLKSLP----SEIF-NLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEE-----LPSSI- 592 (689)
Q Consensus 527 ~~L~~L~l~~~~~~~~~p----~~l~-~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~-----l~~~i- 592 (689)
++|+.|+|++|.+..... ..+. ..++|++|++++|.....-... ...+|+.|++++|.++. +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445566666555332211 1111 1245666666655422110000 01345666666665542 11112
Q ss_pred ccCCCCCEEecCCCCCCC----CCCcccCCCCCccEEEeecCCCCC----ccCcccCCCCCCCEEEccCCCCc-----cc
Q 048627 593 ERQLRLSWLDLTDCKMFK----SLPSSLCKLKSLGVLDLHGCSNLR----RLPECLGQLSSPILLNLAETNIE-----RI 659 (689)
Q Consensus 593 ~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~l~-----~l 659 (689)
...++|++|++++|.+.. .++..+..+++|++|+|++|.... .++..+..+++|+.|++++|.++ .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 124556666666665422 233334455566666666655432 12334444556666666666655 23
Q ss_pred cchhhccCCCcEEecCCCCCC
Q 048627 660 PKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 660 p~~~~~l~~L~~L~l~~~~~l 680 (689)
+..+..+++|+.|++++|++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 333444566666666666543
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.81 E-value=2.1e-08 Score=93.01 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=42.3
Q ss_pred CCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 60 DNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.....++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999864 3356688999999999999999998864
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.79 E-value=5.5e-08 Score=99.11 Aligned_cols=257 Identities=16% Similarity=0.129 Sum_probs=143.4
Q ss_pred CCCCCcccchhhHHHHHHhhcCC---CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 60 DNKNQLVGVESTVEEIESLLGVE---SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~~~---~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
.....++|++..++++..++... ......|.|+|++|+|||++|+.+++.....| +.+. ... . .....+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~---~-~~~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM---I-EKSGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG---C-CSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh---c-cchhHH
Confidence 35567999999999999888632 23445689999999999999999988865432 2222 111 1 111111
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCC------------------CCCCceEE
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDW------------------LTPVSRII 196 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~------------------~~~g~~il 196 (689)
. ..+. . ..+..+|+||+++.. .....+...+.. ..+...+|
T Consensus 98 ~-~~~~-----------------~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 98 A-AILT-----------------N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp H-HHHH-----------------T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred H-HHHH-----------------h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1 1111 0 235578999999753 222222221110 01234566
Q ss_pred eeccchhh-hhh-c-CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhhc-----
Q 048627 197 ITTRNKQV-LRN-W-EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFLY----- 268 (689)
Q Consensus 197 iTtR~~~~-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~----- 268 (689)
.+|..... ... . .....+.+++++.++...++...+..... ....+....+++.+.|+|..+..+...+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 236 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADV 236 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 55554321 111 1 22368999999999999999877632221 12245677888899999965544333211
Q ss_pred -CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhccccc-CCcCHHHHHHHHHhcCCCchhchh-HH
Q 048627 269 -KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFF-RGEGVNLVMKFFDASGFYPEIGIN-VL 342 (689)
Q Consensus 269 -~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~-~~~~~~~l~~l~~~~~~~~~~~l~-~L 342 (689)
+. +......++.. +..+...++.-++..+..++-.. ...+...+.+.++.........++ .|
T Consensus 237 ~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l 304 (338)
T 3pfi_A 237 NDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYL 304 (338)
T ss_dssp TTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHH
T ss_pred hcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHH
Confidence 11 22323222222 12223345555555665555442 224566676666433323333455 78
Q ss_pred hhcCceEEccCCeEE
Q 048627 343 VDKSLIAIDSYNKIT 357 (689)
Q Consensus 343 ~~~~li~~~~~~~~~ 357 (689)
++.+++.....++..
T Consensus 305 ~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 305 LANGYIERTAKGRIA 319 (338)
T ss_dssp HHTTSEEEETTEEEE
T ss_pred HHcCceecCCCcccc
Confidence 899999887666554
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.1e-07 Score=102.32 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=105.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCC---------------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeec
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVE---------------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENV 123 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~---------------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 123 (689)
|.....++|++..++++.+++... ....+.+.|+|++|+||||+|+.+++.+. + ..+.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~-~~i~in-- 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y-DILEQN-- 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C-EEEEEC--
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C-CEEEEe--
Confidence 344567999999999999998631 01347899999999999999999999873 1 122222
Q ss_pred cchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHH--hhcCCcEEEEEcCCCChH-----HHHHHhcCCCCCCCCceEE
Q 048627 124 RVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFR--RLSRIKILIVFDDVTCFT-----QLESLIGSLDWLTPVSRII 196 (689)
Q Consensus 124 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~g~~il 196 (689)
.+.. .. ..+....+........-......... ...+++.+||||+++... .+..+...+. ..+..||
T Consensus 110 --~s~~-~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iI 183 (516)
T 1sxj_A 110 --ASDV-RS-KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLI 183 (516)
T ss_dssp --TTSC-CC-HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEE
T ss_pred --CCCc-ch-HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEE
Confidence 1111 12 12222222222111100011110000 123677899999996421 1222222211 1234455
Q ss_pred eeccchh---hhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh-HHHh
Q 048627 197 ITTRNKQ---VLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA-LKVL 263 (689)
Q Consensus 197 iTtR~~~---~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~ 263 (689)
+++.+.. +.........+.+++++.++..+.+...+......- ..+....|++.++|.+.. +..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 5554322 222223446899999999999998877653322111 123467888899996554 4443
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=3.2e-07 Score=95.25 Aligned_cols=237 Identities=9% Similarity=0.152 Sum_probs=134.9
Q ss_pred ChhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCccccCcc
Q 048627 418 NPKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQLGDC 495 (689)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l~~~ 495 (689)
...+|..+ +|+.+.+..+ +...-..++.. ..|+.+.+.. .++.|+... ++.+|+.+++.+|.++.++..
T Consensus 128 ~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~------~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN------STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT-CCEECTTTTTT------CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred hHhhcccC-CccEEEeCCC-ccEECHHhcCC------CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 34566664 6777777644 22211122222 1466666664 555666433 667788888888777777665
Q ss_pred cccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCC---c
Q 048627 496 VKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---S 572 (689)
Q Consensus 496 ~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~---~ 572 (689)
.-.+.+|+.+.+... + ..++ ...+.++++|+.+++..+ +..++.....-++|+.+.+.+ .+..++... +
T Consensus 199 aF~~~~L~~l~lp~~--l-~~I~-~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c 270 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--L-KEIG-SQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYC 270 (401)
T ss_dssp TTTTCCCSEEECCTT--C-CEEC-TTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTC
T ss_pred hEeecccCEEEeCCc--h-heeh-hhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--CccEEChhHhhCC
Confidence 444567777776543 2 3333 246677777888877653 344444322336777777743 234444332 2
Q ss_pred CCCcEEEccccccc-----ccC-cccccCCCCCEEecCCCCCCCCC-CcccCCCCCccEEEeecCCCCCcc-CcccCCCC
Q 048627 573 GNISWLLLRGSAIE-----ELP-SSIERQLRLSWLDLTDCKMFKSL-PSSLCKLKSLGVLDLHGCSNLRRL-PECLGQLS 644 (689)
Q Consensus 573 ~~L~~L~l~~~~l~-----~l~-~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~ 644 (689)
.+|+.+.+.++.+. .++ ..+..+++|+.+.+.++ + ..+ ...+.++++|+.+.|..+ +..+ +.++.++
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~- 345 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT- 345 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-
Confidence 46677777665543 333 24566777777777642 3 333 335666777777777542 3333 3456666
Q ss_pred CCCEEEccCCCCccccch-hhccC-CCcEEecCC
Q 048627 645 SPILLNLAETNIERIPKS-IIQLF-MLRYLLLNC 676 (689)
Q Consensus 645 ~L~~L~l~~~~l~~lp~~-~~~l~-~L~~L~l~~ 676 (689)
+|+.+++.+|.+..++.. +..++ +++.|.+-.
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 777777777766654432 34443 466665543
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=7.5e-09 Score=105.45 Aligned_cols=133 Identities=11% Similarity=0.124 Sum_probs=78.5
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccc-cCcccc--cCCCCCEEecCCC--CCCC-----CCCccc
Q 048627 547 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEE-LPSSIE--RQLRLSWLDLTDC--KMFK-----SLPSSL 616 (689)
Q Consensus 547 l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~-l~~~i~--~l~~L~~L~l~~~--~~~~-----~lp~~~ 616 (689)
+..+++|+.|++++|..+ .+|.....+|+.|++..+.+.. ....+. .+++|+.|+|+.+ ...+ .+...+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred HhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 345566777777665322 2333334667777776665541 112232 6788888887531 1111 111122
Q ss_pred --CCCCCccEEEeecCCCCCccCccc---CCCCCCCEEEccCCCCcc-----ccchhhccCCCcEEecCCCCCC
Q 048627 617 --CKLKSLGVLDLHGCSNLRRLPECL---GQLSSPILLNLAETNIER-----IPKSIIQLFMLRYLLLNCSEGH 680 (689)
Q Consensus 617 --~~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l 680 (689)
..+++|++|++++|......+..+ ..+++|+.|+|+.|.+.. ++..+.++++|+.|++++|.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 347788888888877654332222 246788888888888763 4555667788888888888754
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=1.3e-07 Score=93.72 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=103.0
Q ss_pred cCCCCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVES 127 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 127 (689)
....+.++|.+..+++|.+.+.. +....+.+.|+|++|+|||++|+.+++.....| +.+. .....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHH
Confidence 34556799999999999887742 113456789999999999999999998865432 2222 11111
Q ss_pred cCCC-ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCC--C
Q 048627 128 QRPG-GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLD--W 188 (689)
Q Consensus 128 ~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~--~ 188 (689)
.... ........+ +.......+.+|+|||++.. ..+..++..+. .
T Consensus 89 ~~~~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 KKFIGEGASLVKDI----------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCSTTHHHHHHHHH----------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HhccchHHHHHHHH----------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 1101 111111111 11222355689999999543 11222222211 1
Q ss_pred CCCCceEEeeccchhhhh-----hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-chhHHH
Q 048627 189 LTPVSRIIITTRNKQVLR-----NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV-PLALKV 262 (689)
Q Consensus 189 ~~~g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 262 (689)
...+..||.||....... .......+.++..+.++..+++...+........ .....+++.+.|. |-.+..
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHH
Confidence 133566777777553322 1123357999999999999999888643222111 1145666777764 434443
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.71 E-value=1.6e-08 Score=97.62 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=100.8
Q ss_pred CCCCCcccch---hhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHH
Q 048627 60 DNKNQLVGVE---STVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWL 136 (689)
Q Consensus 60 ~~~~~~vGr~---~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 136 (689)
...+.|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++........+.|+.. ...... +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~---~~-- 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASI---ST-- 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGS---CG--
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHH---HH--
Confidence 3446788743 5566677666432 45678899999999999999999987655444555542 211111 00
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH----HHHHhcCCCCC-CCCc-eEEeeccchh-------
Q 048627 137 RQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ----LESLIGSLDWL-TPVS-RIIITTRNKQ------- 203 (689)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~l~~~l~~~-~~g~-~iliTtR~~~------- 203 (689)
..+ +.+ .++-+||+||++.... .+.+...+... ..+. ++|+||+...
T Consensus 97 ------------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 97 ------------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp ------------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred ------------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 000 011 3456889999964311 22222211100 1222 4777776431
Q ss_pred --hhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 204 --VLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 204 --~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
+...+.....+.+++++.++..+++...+..... .-..+....+++.++|.+..+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111112268999999999999999887632221 1124567788889999887655443
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=2.2e-07 Score=95.35 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=109.7
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc--cccce-EEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG--DFEGT-CFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~-~~~~~~~~~~~~~~~~~~ 135 (689)
|.....++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.. .+... ..+. .+.. .....
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~-~~~~~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDE-RGISI 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSC-CCHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccc-cchHH
Confidence 3455679999999999999996432 233889999999999999999988642 12221 2222 1111 22222
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-hhhh-cCcc
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WEVR 211 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~~~~-~~~~ 211 (689)
+.. .....................-.+++-++++|+++.. .....+...+.......++|++|.... +... ....
T Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 106 VRE-KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HTT-HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHH-HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 221 1111111100000000111111245679999998643 223344333322344566777665432 2111 1223
Q ss_pred eEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 212 KIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 212 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
..+.+.+++.++....+...+...... -..+..+.|++.++|.|..+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 578999999999999988776332221 1245678899999999986443
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.69 E-value=3e-07 Score=93.95 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHhhcccccccccCCCCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHH
Q 048627 37 ESELINEVVNHILKRLDEVFQLRDNKNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAI 106 (689)
Q Consensus 37 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~ 106 (689)
+...++.+...+..+. ++.....++|.+..++.|.+.+.. .....+.|.|+|++|+|||++|+.+
T Consensus 63 ~~~~~~~i~~~i~~~~-----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG-----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCCS-----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC-----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 3344444444443332 234456799999999999887631 1134567899999999999999999
Q ss_pred HHHhhccccceEEeeeccchhcCCCC-hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh---------
Q 048627 107 FDKISGDFEGTCFLENVRVESQRPGG-LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--------- 176 (689)
Q Consensus 107 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------- 176 (689)
++.....| +.+. .......... .....+.++ ......++.+|+||+++..
T Consensus 138 a~~~~~~~---~~i~-~~~l~~~~~g~~~~~~~~~~----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 138 ASQSGATF---FSIS-ASSLTSKWVGEGEKMVRALF----------------AVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHHTTCEE---EEEE-GGGGCCSSTTHHHHHHHHHH----------------HHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHHcCCeE---EEEe-hHHhhccccchHHHHHHHHH----------------HHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 98764322 2222 2221111011 111111111 1122356789999999432
Q ss_pred ----HHHHHHhcCCC----CCCCCceEEeeccchhhh-hh--cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHH
Q 048627 177 ----TQLESLIGSLD----WLTPVSRIIITTRNKQVL-RN--WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKL 245 (689)
Q Consensus 177 ----~~~~~l~~~l~----~~~~g~~iliTtR~~~~~-~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 245 (689)
.....++..+. ....+..||.||...... .. -.....+.+...+.++..+++...+...... -..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHH
Confidence 11222222211 112344555566543211 11 1233578899999999999887776322211 11345
Q ss_pred HHHHHHHhCCC-chhHHHhhh
Q 048627 246 SSNVMKYAQGV-PLALKVLGC 265 (689)
Q Consensus 246 ~~~i~~~~~g~-Plal~~~~~ 265 (689)
...+++.+.|. +-.+..++.
T Consensus 276 l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 77888888884 445555543
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.8e-08 Score=95.94 Aligned_cols=163 Identities=11% Similarity=0.069 Sum_probs=96.8
Q ss_pred CcccchhhHHHHHHhhcC--CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc-----c--ceEEeeeccchhcCCCChH
Q 048627 64 QLVGVESTVEEIESLLGV--ESKDVWALGIWGIGGIGKTTIARAIFDKISGDF-----E--GTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~--~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~ 134 (689)
.+.||++|+++|...|.. ..+....+.|+|++|+|||++|+.+++++.... . ..+++.+. .. .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~-~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----EL-AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CC-C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----cc-CCHH
Confidence 377999999999887752 234567889999999999999999999875321 1 22344321 11 4445
Q ss_pred HHHHHHHHHhcCCCCC-CcchHHHHHh---h---cCCcEEEEEcCCCChHHHHHHhcCCCCC-CCCce--EEeeccchh-
Q 048627 135 WLRQKLLLNLLKDENV-IPDIDLNFRR---L---SRIKILIVFDDVTCFTQLESLIGSLDWL-TPVSR--IIITTRNKQ- 203 (689)
Q Consensus 135 ~l~~~~l~~~~~~~~~-~~~~~~l~~~---l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~-~~g~~--iliTtR~~~- 203 (689)
.+...+..++.+.... ......+... + .+++++++||+++...+-+.+...+.|. ...++ ||.++...+
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 6777777777654322 2233333332 2 3567999999997643212221111110 12232 333333221
Q ss_pred ---hh-----hhcCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 204 ---VL-----RNWEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 204 ---~~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.+ ..++ ...+.+++.+.+|..+++..++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11 1121 2579999999999999988776
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=6.2e-08 Score=99.18 Aligned_cols=91 Identities=25% Similarity=0.173 Sum_probs=53.4
Q ss_pred cccCccCCCCCCCCEEeccCCCCCCCCCCC---CcCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCccc
Q 048627 541 KSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSL 616 (689)
Q Consensus 541 ~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~ 616 (689)
..+|. +..+++|++|+|++++.+..+|.. .+.+|+.|+|++|.+..++. .+..+++|++|+|++|.+. .+|..+
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT 99 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHH
Confidence 33444 444444444444432223333321 12344555555566665544 5788999999999999985 555444
Q ss_pred CCCCCccEEEeecCCCC
Q 048627 617 CKLKSLGVLDLHGCSNL 633 (689)
Q Consensus 617 ~~l~~L~~L~l~~~~~~ 633 (689)
.....|+.|+|.+|...
T Consensus 100 ~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TCSCCCCEEECCSSCCC
T ss_pred cccCCceEEEeeCCCcc
Confidence 33334999999998754
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=5.4e-10 Score=114.99 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCCcEEEccccccc-----ccCcccccCCCCCEEecCCCCCCC----CCCcccCCCCCccEEEeecCCCCC----ccCcc
Q 048627 573 GNISWLLLRGSAIE-----ELPSSIERQLRLSWLDLTDCKMFK----SLPSSLCKLKSLGVLDLHGCSNLR----RLPEC 639 (689)
Q Consensus 573 ~~L~~L~l~~~~l~-----~l~~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~ 639 (689)
++|+.|++++|.++ .++..+..+++|++|++++|.+.. .++..+..+++|++|+|++|.... .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 34555555555554 345556677788888888887643 234556667788888888877653 23444
Q ss_pred cCCCCCCCEEEccCCCCc
Q 048627 640 LGQLSSPILLNLAETNIE 657 (689)
Q Consensus 640 l~~l~~L~~L~l~~~~l~ 657 (689)
+...++|++|++++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 555678888888888877
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.63 E-value=6.8e-07 Score=87.77 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=93.3
Q ss_pred CCCcccchhhHHHHHH-------hhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCCh
Q 048627 62 KNQLVGVESTVEEIES-------LLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGL 133 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~-------~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 133 (689)
...++|.+..++++.. .+. ......+.+.|+|++|+|||++|+.+++.....| +.+...... .. ...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g-~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IG-FSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TT-CCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cC-Cch
Confidence 3468898887766665 222 1234577899999999999999999999854322 222211110 00 111
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh------------HHHHHHhcCCCC---CCCCceEEee
Q 048627 134 AWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF------------TQLESLIGSLDW---LTPVSRIIIT 198 (689)
Q Consensus 134 ~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~g~~iliT 198 (689)
...... + ...+......+..+|+|||++.. ..++.+...+.. ......||.|
T Consensus 107 ~~~~~~-~------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 107 TAKCQA-M------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp HHHHHH-H------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred HHHHHH-H------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 100000 0 01122223356789999998542 122333332221 2233446777
Q ss_pred ccchhhhhh---cC-cceEEEcCCCCH-HHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC
Q 048627 199 TRNKQVLRN---WE-VRKIYEVEALEY-HHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV 256 (689)
Q Consensus 199 tR~~~~~~~---~~-~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (689)
|........ .. ....+.+++++. ++...++.... .. ..+....+++.+.|.
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTS
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCC
Confidence 776644332 12 246789999988 66666655431 11 134577788888884
No 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.63 E-value=7.4e-07 Score=89.75 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=104.5
Q ss_pred cCCCCCcccchhhHHHHHHhhc----------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLG----------VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+..-..++|.+..++.|.+.+. ......+.|.|+|++|+|||++|+.+++.....| +.+. ......
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHhh
Confidence 3445679999999999988772 1222356789999999999999999999865432 2222 111111
Q ss_pred C-CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------------HHHHHhcCC---CCCCC
Q 048627 129 R-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------------QLESLIGSL---DWLTP 191 (689)
Q Consensus 129 ~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~~ 191 (689)
. ........+.+ +......++.+|+||+++... ....++..+ .....
T Consensus 90 ~~~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 90 KWMGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp TTGGGHHHHHHHH----------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred cccchHHHHHHHH----------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 01111111111 112223566899999996421 122222222 11234
Q ss_pred CceEEeeccchhhhhh---cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-chhHHHhh
Q 048627 192 VSRIIITTRNKQVLRN---WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV-PLALKVLG 264 (689)
Q Consensus 192 g~~iliTtR~~~~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 264 (689)
+..||.||........ -.....+.++..+.++..+++..++...... ........+++.+.|. +-.+..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5556667665422110 1233578899999999999999887432211 1234567788888874 33444333
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.62 E-value=5.8e-07 Score=87.81 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred CCCCcccchhhHHHHHHhhc---CC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 61 NKNQLVGVESTVEEIESLLG---VE-------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~---~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
....++|.+..++.+.+++. .. ....+.|.|+|++|+|||++|+.+++.....| +.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc
Confidence 34578999988888876542 11 12346688999999999999999999875432 2222 11111110
Q ss_pred CCh-HHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-----------------HHHHHHhcCCCC--CC
Q 048627 131 GGL-AWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-----------------TQLESLIGSLDW--LT 190 (689)
Q Consensus 131 ~~~-~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~l~~--~~ 190 (689)
... ..... ..+.......+.+|+|||++.. ..+..++..+.. ..
T Consensus 80 ~~~~~~~~~----------------~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 80 GGLGAARVR----------------SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TTHHHHHHH----------------HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred cChhHHHHH----------------HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 000 01111 1122222345789999999754 112223222111 12
Q ss_pred CCceEEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch
Q 048627 191 PVSRIIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 191 ~g~~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (689)
.+..||.||....... . . .....+.++..+.++..+++..++..... ..........+++.+.|.+-
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 3455666665543221 1 1 23367889999999999999887633222 11222234678888888764
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.60 E-value=1.1e-07 Score=100.01 Aligned_cols=180 Identities=12% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCcc-cchhhH--HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccc--eEEeeeccchhcCCCChHHHH
Q 048627 63 NQLV-GVESTV--EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEG--TCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 63 ~~~v-Gr~~~~--~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 137 (689)
+.|| |..... ..+..+...... ...+.|+|++|+||||||+.+++.+...++. ++++.. ..+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-----------~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----------EKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-----------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-----------HHHH
Confidence 3465 655443 334444332222 5678999999999999999999987655432 334331 1123
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccchh---------
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNKQ--------- 203 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~~~--------- 203 (689)
..+...+... ....+...+..+.-+|+|||++... ..+.+...+.. ...|..||+||....
T Consensus 173 ~~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 173 NDLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3333333321 2233444444356789999995422 22333222211 135677888887531
Q ss_pred hhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHH
Q 048627 204 VLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 204 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
+...+.....+.+++++.++..+++...+...... -..+....|++.+.|.+..+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 11222223578899999999999988776321111 012346677778888776543
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.57 E-value=2.4e-06 Score=85.77 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=102.4
Q ss_pred CCCCCcccchhhHHHHHHhhc----------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hc
Q 048627 60 DNKNQLVGVESTVEEIESLLG----------VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQ 128 (689)
Q Consensus 60 ~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~ 128 (689)
..-+.++|.+..++.|.+.+. ......+.|.|+|++|+|||+||+.+++..... ..+.+. .... +.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~-~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEE-CCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEE-hHHHHhh
Confidence 344578999998888887652 112234788999999999999999999987221 112222 1111 11
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------------HHHHHhcCC---CCCCCC
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------------QLESLIGSL---DWLTPV 192 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~~g 192 (689)
.........+.++ ...-..++.+|+||+++... ....++..+ .....+
T Consensus 86 ~~g~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 86 WLGESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCCSCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred hhhHHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0011112222211 11223567899999996531 112222221 111334
Q ss_pred ceEEeeccchhhhh-h--cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHhh
Q 048627 193 SRIIITTRNKQVLR-N--WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVLG 264 (689)
Q Consensus 193 ~~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 264 (689)
..||.||....... . -.....+.++..+.++..+++..++...... ........+++.+.|..- .+..++
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665432111 1 1334678999999999999998876332211 123457788888888743 354444
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.57 E-value=6.3e-07 Score=92.41 Aligned_cols=197 Identities=12% Similarity=0.003 Sum_probs=103.8
Q ss_pred CCCcccchhhHHHH---HHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 62 KNQLVGVESTVEEI---ESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 62 ~~~~vGr~~~~~~l---~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
.+.++|++..++.+ .+.+..+....+.+.|+|++|+|||++|+.+++.+....... .+....-.+.. ........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLE-MSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSS-SCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcc-cchhHHHH
Confidence 56799999987764 444443333346899999999999999999999886432221 12211111111 22222222
Q ss_pred HHHHHhcCC------------------------------CCCCcchHHHHHhh---------cCC----cEEEEEcCCCC
Q 048627 139 KLLLNLLKD------------------------------ENVIPDIDLNFRRL---------SRI----KILIVFDDVTC 175 (689)
Q Consensus 139 ~~l~~~~~~------------------------------~~~~~~~~~l~~~l---------~~~----~~LlVlDdv~~ 175 (689)
+.+....+. .........+++.+ .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222221110 00000111111111 133 34999999975
Q ss_pred h--HHHHHHhcCCCCCCCCceEEeeccc------------h-hhh-hhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCC
Q 048627 176 F--TQLESLIGSLDWLTPVSRIIITTRN------------K-QVL-RNWEVRKIYEVEALEYHHALELFSRHAFKRNHPD 239 (689)
Q Consensus 176 ~--~~~~~l~~~l~~~~~g~~iliTtR~------------~-~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 239 (689)
. .....+...+...... .++++|.. . .+. ........+.+++++.++..+++...+.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-- 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 4 3344444443322222 33333321 1 111 11223356899999999999999877643222
Q ss_pred hhHHHHHHHHHHHhC-CCchhHHHh
Q 048627 240 VGYEKLSSNVMKYAQ-GVPLALKVL 263 (689)
Q Consensus 240 ~~~~~~~~~i~~~~~-g~Plal~~~ 263 (689)
.-..+....+++.+. |.|..+..+
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 122456778888887 888655433
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.56 E-value=4.5e-07 Score=91.02 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=86.8
Q ss_pred CcccchhhHHHHHHhhcC-------------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc----ceEEeeeccch
Q 048627 64 QLVGVESTVEEIESLLGV-------------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE----GTCFLENVRVE 126 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~-------------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 126 (689)
.++|.+..++.+.+++.. .......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 488999998888876531 1234557899999999999999999988643211 222222 1111
Q ss_pred hcC-CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCC-----------ChHHHHHHhcCCCCCCCCce
Q 048627 127 SQR-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVT-----------CFTQLESLIGSLDWLTPVSR 194 (689)
Q Consensus 127 ~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~g~~ 194 (689)
... ......-...+ +... +.-+|+||+++ .......+...+.....+..
T Consensus 111 ~~~~~g~~~~~~~~~----------------~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 111 VGQYIGHTAPKTKEV----------------LKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp CCSSTTCHHHHHHHH----------------HHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred hhhcccccHHHHHHH----------------HHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 110 00011111111 1111 23489999997 33334445444433345667
Q ss_pred EEeeccchhhhh------h-c-CcceEEEcCCCCHHHHHHHHHHhcc
Q 048627 195 IIITTRNKQVLR------N-W-EVRKIYEVEALEYHHALELFSRHAF 233 (689)
Q Consensus 195 iliTtR~~~~~~------~-~-~~~~~~~l~~L~~~~~~~lf~~~~~ 233 (689)
||.||....... . . .....+.+++++.++..+++...+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 777775432110 0 0 1226899999999999999987763
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=3.5e-07 Score=93.81 Aligned_cols=197 Identities=14% Similarity=0.080 Sum_probs=105.2
Q ss_pred cCCCCCcccchhhHHHHHHhh-cCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeee---------------
Q 048627 59 RDNKNQLVGVESTVEEIESLL-GVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLEN--------------- 122 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l-~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~--------------- 122 (689)
|.....++|.+..++.+.+++ ..+ .... +.|+|++|+||||+|+.++..+.....+.+++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334567999999999999988 432 2233 8999999999999999999864322111111100
Q ss_pred --------ccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCC
Q 048627 123 --------VRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPV 192 (689)
Q Consensus 123 --------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 192 (689)
.......... ....++.+..+.....-.... .+. .+..++-++|+|+++... ....+...+.....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNND-RIVIQELLKEVAQMEQVDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EECSSEEEECCC----CC-HHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ecccceEEecHhhcCCcc-hHHHHHHHHHHHHhccccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0000000000 001222222221110000000 000 023467799999997632 233333333223456
Q ss_pred ceEEeeccchh-hhhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhH-HHHHHHHHHHhCCCchhHHH
Q 048627 193 SRIIITTRNKQ-VLRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGY-EKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 193 ~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~ 262 (689)
..+|++|.+.. +... ......+++.+++.++..+.+...+...+.. -. .+.+..|++.++|.+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHH
Confidence 77777776532 2211 2334789999999999999998776322211 11 24567888999999875443
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.53 E-value=2.7e-06 Score=84.67 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=107.1
Q ss_pred HHHHHhhcccccccccCCCCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 44 VVNHILKRLDEVFQLRDNKNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 44 i~~~v~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+++.+.+.+.+ ..++.....++|.+..++.+.+.+.. .....+.+.|+|++|+||||+|+.++......
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIVE-GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTBC-CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcc-CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34445444331 12344556799999999999887631 01235678999999999999999999876433
Q ss_pred ccceEEeeeccchh-cCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHH
Q 048627 114 FEGTCFLENVRVES-QRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQL 179 (689)
Q Consensus 114 f~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~ 179 (689)
| +.+. ..... ..........+.+. .......+.+|+||+++.. ...
T Consensus 82 ~---~~i~-~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 141 (297)
T 3b9p_A 82 F---LNIS-AASLTSKYVGDGEKLVRALF----------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLK 141 (297)
T ss_dssp E---EEEE-STTTSSSSCSCHHHHHHHHH----------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHH
T ss_pred e---EEee-HHHHhhcccchHHHHHHHHH----------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHH
Confidence 2 2222 11111 11011111111111 1122356679999999542 111
Q ss_pred HHHhc---CCCCC--CCCceEEeeccchhhhh-h--cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 048627 180 ESLIG---SLDWL--TPVSRIIITTRNKQVLR-N--WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMK 251 (689)
Q Consensus 180 ~~l~~---~l~~~--~~g~~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~ 251 (689)
..++. ..... +.+..||.||....... . -.....+.++..+.++...++...+...... -..+....+++
T Consensus 142 ~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~ 219 (297)
T 3b9p_A 142 TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAK 219 (297)
T ss_dssp HHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Confidence 11221 11111 13345666666542111 0 0223578888889988888887765322211 11345678888
Q ss_pred HhCCCch-hHHHhh
Q 048627 252 YAQGVPL-ALKVLG 264 (689)
Q Consensus 252 ~~~g~Pl-al~~~~ 264 (689)
.+.|.+- ++..+.
T Consensus 220 ~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 220 ITDGYSGSDLTALA 233 (297)
T ss_dssp HTTTCCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 8988876 454443
No 182
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=2.1e-06 Score=89.07 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=145.0
Q ss_pred ceeEEEecCCCCCCCCCCC-CcCCceeeecCCCCccccC-cccccCccchhhccccCccccccCCCCCCCCCCCcccEEe
Q 048627 456 EVKYFHWHGYPLKSLPSNL-SAEKLVFLEVPDNNIEQLG-DCVKHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLN 533 (689)
Q Consensus 456 ~L~~l~~~~~~~~~lp~~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 533 (689)
+|+.+.+..+ ++.|+... ...+|+.+.+.+ .++.+. ..+..+.+|+.+.+..+. + ..++. ..+. ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l-~~I~~-~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-I-TKLPA-STFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-C-SEECT-TTTT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-c-eEech-hhEe-ecccCEEE
Confidence 4666776654 66666543 445788888876 566554 457788888888887542 3 34442 2333 47888888
Q ss_pred ccCCCCCcccC-ccCCCCCCCCEEeccCCCCCCCCCCCCc--CCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCC
Q 048627 534 LRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMF 609 (689)
Q Consensus 534 l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~l~~~p~~~~--~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~ 609 (689)
|..+ +..++ ..+..+++|+.+.+..+ +..++...+ ++|+.+.+. +.+..++. .+..+++|+.+.+.++...
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 8743 44554 35667888999988763 455544332 678888884 44666644 5788999999999887653
Q ss_pred -----CCCCcccCCCCCccEEEeecCCCCCccC-cccCCCCCCCEEEccCCCCcccc-chhhccCCCcEEecCCCCCCC
Q 048627 610 -----KSLPSSLCKLKSLGVLDLHGCSNLRRLP-ECLGQLSSPILLNLAETNIERIP-KSIIQLFMLRYLLLNCSEGHE 681 (689)
Q Consensus 610 -----~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~ 681 (689)
.--+..+..+++|+.+.+.+ . +..++ .++.++.+|+.+.+.. +++.++ ..+.++ +|+.+.+.+|....
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 12345688899999999985 3 44444 5788899999999954 477666 456778 99999999986644
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.52 E-value=2.1e-06 Score=87.51 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=102.3
Q ss_pred cCCCCCcccchhhHHHHHHhhc----------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLG----------VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+.....++|.+..++.|.+.+. ......+.|.|+|++|+|||++|+.+++.....| +.+. ......
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHHhh
Confidence 3445679999999999988762 1112245688999999999999999999875332 2222 111111
Q ss_pred C-CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------------HHHHHhcCC---CCCCC
Q 048627 129 R-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------------QLESLIGSL---DWLTP 191 (689)
Q Consensus 129 ~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~~ 191 (689)
. ........+.+ +......++.+|+||+++... ....++..+ .....
T Consensus 123 ~~~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 123 KWMGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp CC---CHHHHHHH----------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred hhcchHHHHHHHH----------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 00011111111 111223567899999996431 122222221 11133
Q ss_pred CceEEeeccchhhhh---hcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-chhHHHhh
Q 048627 192 VSRIIITTRNKQVLR---NWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV-PLALKVLG 264 (689)
Q Consensus 192 g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 264 (689)
+..||.||....... .-.....+.++..+.++..+++..++...... ........|++.+.|. +-.|..++
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455665665442111 01344678899999999999998876432211 1134567788888885 43444443
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.51 E-value=5.5e-07 Score=94.28 Aligned_cols=177 Identities=16% Similarity=0.241 Sum_probs=104.2
Q ss_pred cCCCCCcccchhhH---HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 59 RDNKNQLVGVESTV---EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 59 ~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
|...+.+||.+..+ ..+...+.. +....+.|+|++|+||||+|+.+++.....|.. +.. . . .....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a---~--~-~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANADVER---ISA---V--T-SGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EET---T--T-CCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEe---c--c-CCHHH
Confidence 44566799999888 778887753 334678999999999999999999987544321 110 1 1 23332
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH--HHHHHhcCCCCCCCCceEEe-eccchhh---hhhcC
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT--QLESLIGSLDWLTPVSRIII-TTRNKQV---LRNWE 209 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~~ili-TtR~~~~---~~~~~ 209 (689)
+... +.... .....+++.+|+||+++... +.+.++..+.. ....+|. ||.+... .....
T Consensus 91 ir~~-~~~a~------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 91 IREA-IERAR------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHH-HHHHH------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHH-HHHHH------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 2221 11110 11124567899999997643 23333333221 1233333 4444421 11123
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccCCC-----CCChhHHHHHHHHHHHhCCCchhHH
Q 048627 210 VRKIYEVEALEYHHALELFSRHAFKRN-----HPDVGYEKLSSNVMKYAQGVPLALK 261 (689)
Q Consensus 210 ~~~~~~l~~L~~~~~~~lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~ 261 (689)
...++.+.+++.++...++...+.... ....-..+..+.+++.++|.+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 346889999999999999988763311 1111235567888888999887544
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.49 E-value=2.3e-06 Score=88.61 Aligned_cols=184 Identities=16% Similarity=0.133 Sum_probs=100.3
Q ss_pred cCCCCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+.....++|.+..++.+.+++.. .....+.|.|+|++|+|||++|+.+++.....| +.+. ......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhhc
Confidence 33456799999999999887721 112246789999999999999999988754322 2222 111100
Q ss_pred C-CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCC----CCC
Q 048627 129 R-PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQLESLIGSLD----WLT 190 (689)
Q Consensus 129 ~-~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~----~~~ 190 (689)
. ..........+ +.......+.+|+||+++.. .....++..+. ...
T Consensus 187 ~~~g~~~~~~~~~----------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KYVGEGEKLVRAL----------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp -----CHHHHHHH----------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cccchHHHHHHHH----------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 00011111111 11112245579999999643 01112221111 112
Q ss_pred CCceEEeeccchhhhh-h-c-CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHhh
Q 048627 191 PVSRIIITTRNKQVLR-N-W-EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVLG 264 (689)
Q Consensus 191 ~g~~iliTtR~~~~~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 264 (689)
....||.||....... . . .....+.+...+.++..+++...+...... -..+....+++.+.|..- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2344555665432211 1 1 233578899999999999998776332221 123456788888888654 454443
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.46 E-value=1.3e-06 Score=88.14 Aligned_cols=178 Identities=13% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCCCcc-cchhh--HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 61 NKNQLV-GVEST--VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 61 ~~~~~v-Gr~~~--~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
..+.|| |.... ...+..+..........+.|+|++|+||||||+.+++.+...-..++++.. ..+.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-----------~~~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-----------DDFA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-----------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-----------HHHH
Confidence 445565 54433 344555554332235678899999999999999999987543223344441 1112
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH----HHHHHhcCCCC-CCCCceEEeeccchh---------
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNKQ--------- 203 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~g~~iliTtR~~~--------- 203 (689)
..+...+.. .....+..... +.-+|+|||++... ..+.+...+.. ...+..||+|+....
T Consensus 78 ~~~~~~~~~-----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 78 QAMVEHLKK-----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHHHHHH-----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHHHHHHc-----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 222222211 11222233332 35688999996432 12222222110 124567888775431
Q ss_pred hhhhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchh
Q 048627 204 VLRNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 204 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (689)
+...+.....+++++ +.++..+++...+...... -..+....+++.+ |..-.
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 111222336799999 9999999998876432221 1245567788888 77654
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.44 E-value=1.6e-06 Score=87.63 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=103.2
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHH
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQ 138 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 138 (689)
|...+.++|.+..++.+.+++..+ ..+.++.++|++|+|||++|+.+++.+.. ..+.+. .+. .....+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~----~~~--~~~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN----GSD--CKIDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE----TTT--CCHHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc----ccc--cCHHHHHH
Confidence 345578999999999999999733 23467888999999999999999988742 223333 111 22222222
Q ss_pred HHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH---HHHHHhcCCCCCCCCceEEeeccchhhh-hh-cCcceE
Q 048627 139 KLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT---QLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKI 213 (689)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~g~~iliTtR~~~~~-~~-~~~~~~ 213 (689)
.+....... ...+++-++++||++... ....+...+.....+.++|+||....-. .. ......
T Consensus 92 ~~~~~~~~~------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 92 PLTNFASAA------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHHHHBC------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHHHHhhc------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 211111110 012467899999998754 3444444333223456788777654311 11 112257
Q ss_pred EEcCCCCHHHHHHHH-------HHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 214 YEVEALEYHHALELF-------SRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 214 ~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
+++++++.++..+++ ...+...... ....+....+++.++|.+..+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA-IADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHHH
Confidence 999999988854332 2222111111 111256777888888877643
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.41 E-value=4.8e-06 Score=87.52 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=104.6
Q ss_pred cCCCCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+.....++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++..... ..+.+. ..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~-~~---- 202 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SS---- 202 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEEC-CC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEe-HH----
Confidence 34456799999999999887621 11234788999999999999999999986211 111221 10
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHH-HhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCCC---CC
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNF-RRLSRIKILIVFDDVTCF-------------TQLESLIGSLDWL---TP 191 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~---~~ 191 (689)
.+ .... .+ .....+..+. ..-...+.+|+||+++.. .....++..+... ..
T Consensus 203 ---~l---~~~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 203 ---DL---VSKW----LG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ---HH---Hhhh----cc--hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 00 0000 00 0111222222 222356789999999753 1234444444322 34
Q ss_pred CceEEeeccchhhhh-h--cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCch-hHHHhh
Q 048627 192 VSRIIITTRNKQVLR-N--WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPL-ALKVLG 264 (689)
Q Consensus 192 g~~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 264 (689)
+..||.||....... . -.....+.++..+.++...+|..++..... .........|++.+.|..- .|..++
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666665442211 1 133457889999999999999887633221 1123456778888888543 444433
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.38 E-value=8.8e-06 Score=80.91 Aligned_cols=176 Identities=15% Similarity=0.193 Sum_probs=99.8
Q ss_pred CCCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC
Q 048627 61 NKNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR 129 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 129 (689)
..+.++|.+..++++.+++.. +-...+.|.|+|++|+|||++|+.+++.....| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 445689999988888877631 123456789999999999999999999864322 2222
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHH----------------HHHHhcCCCC--CCC
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQ----------------LESLIGSLDW--LTP 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~ 191 (689)
...+... ..+. ........+.......+.+++||+++.... ...++..+.. ...
T Consensus 82 ---~~~l~~~----~~g~-~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 82 ---GPELLTM----WFGE-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp ---HHHHHHH----HHTT-CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred ---hHHHHhh----hcCc-hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 1112111 1111 111112223333345678999999974211 1222222211 123
Q ss_pred CceEEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhccCCCCC-ChhHHHHHHHHHHHhCCCchh
Q 048627 192 VSRIIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 192 g~~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pla 259 (689)
+..||.||....... . . .....+.++..+.++..+++..++...... ... ...++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 456676776543221 1 1 234689999999999999988776332211 111 34556667777654
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.35 E-value=8.8e-06 Score=82.23 Aligned_cols=173 Identities=13% Similarity=0.108 Sum_probs=100.7
Q ss_pred hhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcccc---------------------ceEEeeeccchh
Q 048627 69 ESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFE---------------------GTCFLENVRVES 127 (689)
Q Consensus 69 ~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 127 (689)
+...+.+.+.+..+ .-.+.+.++|++|+|||++|+.+++.+..... ...++... ..+
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccC
Confidence 44556677766422 23467889999999999999999998643221 11111100 000
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-h
Q 048627 128 QRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-V 204 (689)
Q Consensus 128 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~ 204 (689)
.. ..+..+ +++...+.... ..+++-++|+|+++.. .....++..+....+++.+|++|.+.. +
T Consensus 86 ~~-~~i~~i-r~l~~~~~~~~------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 86 NT-LGVDAV-REVTEKLNEHA------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp SS-BCHHHH-HHHHHHTTSCC------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CC-CCHHHH-HHHHHHHhhcc------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 00 111111 12222211110 1256788999999754 334455555443345667666665542 3
Q ss_pred hhh-cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhh
Q 048627 205 LRN-WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLG 264 (689)
Q Consensus 205 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 264 (689)
.+. ......+++.+++.++..+++.... .. ..+.+..+++.++|.|..+..+.
T Consensus 152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 222 2344689999999999999998775 11 13456788999999997665444
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.31 E-value=1.7e-06 Score=79.37 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999854 33556789999999999999999998644
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.3e-05 Score=79.33 Aligned_cols=173 Identities=18% Similarity=0.251 Sum_probs=100.3
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-C
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-P 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 130 (689)
+++.|.+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +.+. ....... .
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhcccc
Confidence 4678899998888876531 223456788999999999999999999876543 2222 2222111 1
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCC--CCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWL--TPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~g 192 (689)
..-....++++. ..-...+.+|+||+++.. ..+..++..+..+ ..+
T Consensus 224 Gese~~vr~lF~----------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 224 GEGSRMVRELFV----------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp THHHHHHHHHHH----------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred chHHHHHHHHHH----------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 111222222222 122356889999999631 0122333322211 234
Q ss_pred ceEEeeccchhhhh-----hcCcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCchh
Q 048627 193 SRIIITTRNKQVLR-----NWEVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 193 ~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 259 (689)
..||.||...+... .-.....+.++..+.++..++|..+...-.. .+.+ ...+++.+.|.--|
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SGA 356 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSGA 356 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCHH
Confidence 44566665443221 1134578999999999999999877633221 1112 45677778876543
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=3.4e-07 Score=93.24 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=11.6
Q ss_pred hhhCCCCcceEEeccc
Q 048627 421 TFTKMCKLRFLKFYSS 436 (689)
Q Consensus 421 ~~~~~~~L~~L~l~~~ 436 (689)
+..++++|+.|.+.+.
T Consensus 134 s~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDI 149 (362)
T ss_dssp THHHHTTCSEEEECCC
T ss_pred hhhhcchhhheeecCc
Confidence 3556788999888654
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=6.2e-06 Score=83.79 Aligned_cols=181 Identities=13% Similarity=0.181 Sum_probs=103.3
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEeeeccchhcCCCChHHHHHH
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLENVRVESQRPGGLAWLRQK 139 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (689)
....++|.+..++.+...+..+ ....+.++|++|+||||+|+.++..+... +...+.-.+ .+.. .+...+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~-~~~~~ir~- 95 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDD-RGIDVVRN- 95 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSC-CSHHHHHT-
T ss_pred cHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---Cccc-ccHHHHHH-
Confidence 3456889999999999988643 33348899999999999999999986432 221111111 1111 22322222
Q ss_pred HHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccchh-hhh-hcCcceEEE
Q 048627 140 LLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLR-NWEVRKIYE 215 (689)
Q Consensus 140 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~~-~~~-~~~~~~~~~ 215 (689)
......... ....+.+-++|+|+++.. .....+...+......+.++++|.... +.. .......+.
T Consensus 96 ~i~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 96 QIKDFASTR----------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHHHHHHBC----------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHHhhc----------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 111111000 001234678999998642 233334333322234566666665432 111 122335789
Q ss_pred cCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhH
Q 048627 216 VEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLAL 260 (689)
Q Consensus 216 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 260 (689)
+.+++.++..+.+...+-..... -..+..+.+++.++|.+.-+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999998887765222211 12445778889999988743
No 195
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.23 E-value=3.5e-05 Score=77.78 Aligned_cols=258 Identities=16% Similarity=0.184 Sum_probs=133.5
Q ss_pred CCCCcccchhhHHHHHHhhcCC---CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHH
Q 048627 61 NKNQLVGVESTVEEIESLLGVE---SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLR 137 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 137 (689)
.-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|. ... ..+ . .....+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~-~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--L-VKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--C-CSHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--h-cCHHHHH
Confidence 4456889988888887776422 223467899999999999999999998754321 111 000 0 1111111
Q ss_pred HHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCC--------C----------CCceEE-
Q 048627 138 QKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWL--------T----------PVSRII- 196 (689)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~--------~----------~g~~il- 196 (689)
.+ ...+. ++-++++|+++.. ...+.+....... + +...++
T Consensus 95 -~~-----------------~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 95 -AI-----------------LTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -HH-----------------HHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -HH-----------------HHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11 11122 2346678887542 2222222111000 0 112222
Q ss_pred eeccchhhhhh--cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCchhHHHhhhhh------c
Q 048627 197 ITTRNKQVLRN--WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVPLALKVLGCFL------Y 268 (689)
Q Consensus 197 iTtR~~~~~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~ 268 (689)
.|++...+... -.......+++.+.++..+++.+.+..... ....+.+..|++.+.|.|..+.-+...+ .
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 34443322211 122246899999999999999877532221 2235568899999999997554333222 1
Q ss_pred CC---CHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcccccCC--cCHHHHHHHHHhcCCCchhchh-HH
Q 048627 269 KR---EKEVWESAINKLQRILHPSIREVLKISYDGLDDKEKNIFLDVACFFRG--EGVNLVMKFFDASGFYPEIGIN-VL 342 (689)
Q Consensus 269 ~~---~~~~~~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~--~~~~~l~~l~~~~~~~~~~~l~-~L 342 (689)
+. +.+..+.++..+. .....++...+..+..++-...+ ...+.+....+.+....+...+ .|
T Consensus 234 ~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l 301 (334)
T 1in4_A 234 KADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYL 301 (334)
T ss_dssp TCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHH
T ss_pred CCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHH
Confidence 11 2333333333321 11124555555555443322222 4555555554433211122222 78
Q ss_pred hhcCceEEccCCeEEec
Q 048627 343 VDKSLIAIDSYNKITMH 359 (689)
Q Consensus 343 ~~~~li~~~~~~~~~~H 359 (689)
...|+++....+++...
T Consensus 302 ~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 302 LQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHTTSEEEETTEEEECH
T ss_pred HHcCCeecccccHHhhH
Confidence 88999999877776544
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.17 E-value=1.3e-05 Score=84.85 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=81.4
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcCCCChH
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 134 (689)
..+.+|||+.+++.+...+... ....+.|+|++|+|||++|+.++..+...+ ...++..+.. ..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~~------ 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--TK------ 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--cc------
Confidence 3457999999999999998632 234567999999999999999999874432 1112211111 00
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhh---hh----h
Q 048627 135 WLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQV---LR----N 207 (689)
Q Consensus 135 ~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~---~~----~ 207 (689)
............+...-..++.+|++| ........+...+. ....++|.+|..... .. .
T Consensus 248 ----------~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 248 ----------YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ----------ccchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000001111122222223567888999 22222233443333 223455555544321 11 1
Q ss_pred cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 208 WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 208 ~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
......+.+++.+.++..+++...+
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHH
Confidence 1223579999999999999998765
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.6e-05 Score=77.07 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=98.6
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-C
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-P 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 130 (689)
..+.|.+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +.+. ....... .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhcccC
Confidence 4688999998888876421 224567899999999999999999999876543 2222 2222111 0
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCC--CCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWL--TPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~g 192 (689)
..-....+.++. ..-...+.+|++|+++.. .....++..+... ..+
T Consensus 285 Gesek~ir~lF~----------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 285 GEGARMVRELFE----------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SHHHHHHHHHHH----------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CHHHHHHHHHHH----------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 111222222222 222356899999999531 0112222222211 223
Q ss_pred ceEEeeccchhhhh-----hcCcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCch
Q 048627 193 SRIIITTRNKQVLR-----NWEVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 193 ~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 258 (689)
..||.||-..+... .-.....+.++..+.++..++|..++..-.. .+.. ...+++.+.|.--
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfSG 416 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNSTG 416 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCCH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCCH
Confidence 34565664432211 1134578999999999999999877633221 1112 4567777877643
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.16 E-value=6.8e-06 Score=94.10 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=40.7
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+.++||+.++.++.+.+... ....+.|+|++|+|||++|+.+++.+.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456999999999999998532 334578999999999999999999864
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=4.7e-05 Score=78.43 Aligned_cols=173 Identities=19% Similarity=0.272 Sum_probs=99.4
Q ss_pred CCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-
Q 048627 62 KNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR- 129 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 129 (689)
-+.+.|.+..+++|.+.+.. +-..++-|.+||++|+|||.||+++++.....| +.+. .......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhhcccc
Confidence 34678899888888776531 223467899999999999999999999876443 2222 2222111
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCC--CCC
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDW--LTP 191 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~ 191 (689)
...-....+.++. ..-...+.+|++|+++.. ..+..++..+.. ...
T Consensus 256 ~Gese~~ir~~F~----------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 256 IGESARIIREMFA----------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSHHHHHHHHHHH----------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred chHHHHHHHHHHH----------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0111222222221 222357899999999531 012233332221 123
Q ss_pred CceEEeeccchhhhh-hc----CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCch
Q 048627 192 VSRIIITTRNKQVLR-NW----EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 192 g~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 258 (689)
+..||.||...+... .+ .....+.++..+.++..++|..+...-.. ...+ ...+++.+.|.--
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence 455666665543322 11 13467899999999999999877633221 1222 4567777877653
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.1e-05 Score=83.02 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 62 KNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
...+.|.+..+++|.+.+.. +-..++-|.+||++|+|||.+|+++++.....| +...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 34678999998888875421 223467899999999999999999999876443 222222221111
Q ss_pred C-ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------H---HHHHHhcCCCCCC--C
Q 048627 131 G-GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------T---QLESLIGSLDWLT--P 191 (689)
Q Consensus 131 ~-~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~~~--~ 191 (689)
. .-....+.++.. .-...+.+|++|+++.. . ....++..+..+. .
T Consensus 256 vGese~~ir~lF~~----------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 256 IGEGAKLVRDAFAL----------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp SSHHHHHHHHHHHH----------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred cchHHHHHHHHHHH----------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1 112222222221 12245789999998421 0 1223333333222 2
Q ss_pred CceEEeeccchhhhh-hc----CcceEEEcCCCCHHHHHHHHHHhccCCC-CCChhHHHHHHHHHHHhCCCc
Q 048627 192 VSRIIITTRNKQVLR-NW----EVRKIYEVEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 192 g~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 257 (689)
+..||.||...+... .+ .....+.++..+.++..++|..+...-. ..+.+ ...+++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 344555665543322 11 2346789999999999999877653221 11112 456677777754
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.11 E-value=8.3e-06 Score=86.27 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCcccchhhHHHHHHhhcCC-----------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 63 NQLVGVESTVEEIESLLGVE-----------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
..++|.+..++++.+++... ....+.|.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhhhc
Confidence 46899999999998877421 23456789999999999999999988764322 2222 222111101
Q ss_pred C-hHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCC--CCCCceE
Q 048627 132 G-LAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQLESLIGSLDW--LTPVSRI 195 (689)
Q Consensus 132 ~-~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~g~~i 195 (689)
+ ..... ...+.....+++.+|+||+++.. .....|+..+.. ...+..|
T Consensus 280 g~~~~~~----------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 280 GESESNL----------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp THHHHHH----------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred chhHHHH----------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 01111 11222333456789999999311 112222222211 1234455
Q ss_pred Eeeccchhh-hhh----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC
Q 048627 196 IITTRNKQV-LRN----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGV 256 (689)
Q Consensus 196 liTtR~~~~-~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (689)
|.||..... ... ......+.+...+.++..+++..++........ ....++++.+.|.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~ 406 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGH 406 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTC
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCC
Confidence 666654422 111 123457999999999999999888633221111 1135566666664
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.10 E-value=5.5e-06 Score=72.41 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 64 QLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999988775222233457899999999999999998864
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=9.1e-07 Score=81.05 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred CccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCCCEEecCCCCCCC----CCCcccCCC
Q 048627 544 PSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRLSWLDLTDCKMFK----SLPSSLCKL 619 (689)
Q Consensus 544 p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l 619 (689)
...+...++|++|++++|..+.. .....+...+...++|++|+|++|.+.. .+...+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n 92 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 92 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC
Confidence 34455677888888887622211 1112334445555666777777666532 233334445
Q ss_pred CCccEEEeecCCCCCc----cCcccCCCCCCCEEEc--cCCCCc-----cccchhhccCCCcEEecCCCCC
Q 048627 620 KSLGVLDLHGCSNLRR----LPECLGQLSSPILLNL--AETNIE-----RIPKSIIQLFMLRYLLLNCSEG 679 (689)
Q Consensus 620 ~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l--~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~ 679 (689)
++|++|+|++|..... +...+...++|++|++ ++|.+. .+...+...++|+.|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6677777776655432 3445555667777777 667665 2445555667777777777764
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.05 E-value=5.8e-05 Score=73.15 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=83.0
Q ss_pred cCCCCCcccchhhHHHHHHhhc---CC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLG---VE-------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~---~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+...+.++|.+..++++.+.+. .. ....+-+.|+|++|+||||+|+.+++.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 3445678999988877766542 10 11244688999999999999999998865332 2332 111111
Q ss_pred CC-CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCC--C
Q 048627 129 RP-GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDW--L 189 (689)
Q Consensus 129 ~~-~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~ 189 (689)
.. .....-. ...+.......+.++++|+++.. .....++..+.. .
T Consensus 84 ~~~~~~~~~~----------------~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 MFVGVGASRV----------------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp SCCCCCHHHH----------------HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred HhhhhhHHHH----------------HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 00 0000000 11122222345679999998321 112222221111 1
Q ss_pred CCCceEEeeccchhhh-hhc----CcceEEEcCCCCHHHHHHHHHHhc
Q 048627 190 TPVSRIIITTRNKQVL-RNW----EVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 190 ~~g~~iliTtR~~~~~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
..+..||.||...... ... .....+.++..+.++..+++..++
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2344566666554321 111 224578888889988888887765
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.05 E-value=4.2e-05 Score=86.66 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc------ccceEEeeeccchhc---CCC
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD------FEGTCFLENVRVESQ---RPG 131 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~~~ 131 (689)
..+.++||+.+++++.+.+... ....+.|+|++|+|||++|+.++..+... ....+|..+...... ...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4457999999999999999633 34557899999999999999999886322 122233221111100 001
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------HHHHHHhcCCCCCCCCceEEeeccc
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------TQLESLIGSLDWLTPVSRIIITTRN 201 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~g~~iliTtR~ 201 (689)
......+.++. .....++.+|+|||++.. .+...++..+.. ..+..+|.+|..
T Consensus 262 ~~e~~l~~~~~----------------~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 262 DFEKRFKALLK----------------QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp CHHHHHHHHHH----------------HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred hHHHHHHHHHH----------------HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 11111222211 112245689999999754 222233333221 234556666654
Q ss_pred hhhhhh-------cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 202 KQVLRN-------WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 202 ~~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
...... ......+.++..+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 1122478999999999998887553
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.8e-06 Score=75.68 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=14.5
Q ss_pred CcEEEccccccccc-CcccccCCCCCEEecCCCC
Q 048627 575 ISWLLLRGSAIEEL-PSSIERQLRLSWLDLTDCK 607 (689)
Q Consensus 575 L~~L~l~~~~l~~l-~~~i~~l~~L~~L~l~~~~ 607 (689)
|+.|++++|.++.. -..+..+++|+.|+|++|.
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555544311 1223444455555555543
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.00 E-value=9.1e-06 Score=74.04 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=30.5
Q ss_pred hhhHHHHHHhhcCCC-CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 69 ESTVEEIESLLGVES-KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 69 ~~~~~~l~~~l~~~~-~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...++.+.+++..-. .....++|+|++|+||||||+.++..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555553211 2346889999999999999999999875
No 208
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.00 E-value=6.8e-06 Score=80.37 Aligned_cols=155 Identities=16% Similarity=0.195 Sum_probs=84.4
Q ss_pred cCCCCCcccchhhHHHHHHhhcC----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
+.....++|.+..++.+.+.+.. +....+.+.|+|++|+|||++|+.+++.....|-. +. ......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH
Confidence 33456799999988888776531 11123347899999999999999999986543311 11 100000
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-----------------HHHHHhcCCCCCC-
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-----------------QLESLIGSLDWLT- 190 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~- 190 (689)
. ..+. ........+.......+.+|+|||++... .+..++..+....
T Consensus 83 ~--------------~~~~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 M--------------FVGL-GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp S--------------CSSS-CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred h--------------hcch-HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0 0000 11111122222223456799999995431 1222333332211
Q ss_pred --CCceEEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhc
Q 048627 191 --PVSRIIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 191 --~g~~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
....||.||....... . . .....+.++..+.++..+++...+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1245666666543211 1 1 223567888888888888887765
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=7.6e-05 Score=76.79 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hcCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQRP 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 130 (689)
.++.|.+..+++|.+.+.. +-..++-|.++|++|+|||++|+++++.....| +.+. .... +...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchhhcccc
Confidence 4678999988888776531 223467799999999999999999999876443 2222 2221 1111
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------H---HHHHHhcCCCC--CCCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------T---QLESLIGSLDW--LTPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~--~~~g 192 (689)
.......+.++. ..-...+.++++|+++.. . .+..++..+.. ...+
T Consensus 248 Ge~e~~ir~lF~----------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 248 GEGPRMVRDVFR----------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp SHHHHHHHHHHH----------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred chhHHHHHHHHH----------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 111222222222 122356789999998410 0 12223222211 1234
Q ss_pred ceEEeeccchhhhh-----hcCcceEEEcCCC-CHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCc
Q 048627 193 SRIIITTRNKQVLR-----NWEVRKIYEVEAL-EYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 193 ~~iliTtR~~~~~~-----~~~~~~~~~l~~L-~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 257 (689)
..||.||...+... .-.....+.++.+ +.++...+|..+..+-.. +..+ ...+++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 45666665442211 1123356888655 566666677666532221 1122 456677777764
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.96 E-value=1.2e-05 Score=80.48 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhcC------------CCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 63 NQLVGVESTVEEIESLLGV------------ESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~------------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999998888877642 012345688999999999999999998874
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00012 Score=74.35 Aligned_cols=172 Identities=18% Similarity=0.246 Sum_probs=97.3
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-C
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR-P 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 130 (689)
.++.|.+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....|- .+. ....... .
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhccC
Confidence 4577899888888776531 2234678999999999999999999998765432 222 2222111 1
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCC--CCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWL--TPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~g 192 (689)
..-....+.++.. .-...+.+|+||+++.. ..+..++..+... ..+
T Consensus 258 Gesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 258 GDGPRLCRQIFKV----------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp SHHHHHHHHHHHH----------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred chHHHHHHHHHHH----------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 1122233332222 22356789999998521 1122232222111 233
Q ss_pred ceEEeeccchhhhh-hc----CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCch
Q 048627 193 SRIIITTRNKQVLR-NW----EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPL 258 (689)
Q Consensus 193 ~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 258 (689)
..||.||-..+... .+ .....+.++..+.++..++|..+...-.. .+.+ ...+++.+.|.--
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfSG 389 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLSG 389 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCCH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence 45566665443322 11 23457889999999999999877633221 1122 4566777777643
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=3.9e-05 Score=75.85 Aligned_cols=146 Identities=10% Similarity=0.091 Sum_probs=88.4
Q ss_pred cchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh---ccccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 67 GVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS---GDFEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
|-+..++.+.+.+..+. .+++.++|++|+||||+|..+++... .......++.. +.....+..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~----~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP----EGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC----SSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC----CcCCCCHHHH-HHHHHH
Confidence 45666778888886443 67889999999999999999988632 11233344331 1101233333 233333
Q ss_pred hcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCCCCCCceEEeeccch-hhhhhcCcceEEEcCCCC
Q 048627 144 LLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNWEVRKIYEVEALE 220 (689)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~~iliTtR~~-~~~~~~~~~~~~~l~~L~ 220 (689)
..... ..+++-++|+|+++.. ....+|+..+....+.+.+|++|.+. .+.+..... .+++.+++
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 32211 1245678899999753 33455555544345567776666443 344433333 89999999
Q ss_pred HHHHHHHHHHhc
Q 048627 221 YHHALELFSRHA 232 (689)
Q Consensus 221 ~~~~~~lf~~~~ 232 (689)
+++..+.+...+
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=0.0001 Score=77.20 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCCcccchhhHHHHHHhhc---C-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 61 NKNQLVGVESTVEEIESLLG---V-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~---~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
....++|.+..++++.+... . +..-++-|.|+|++|+|||+||+.++......| +.+. ........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH
Confidence 34568999988777776542 1 111234588999999999999999999865332 2222 21111110
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCC--CCCC
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDW--LTPV 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~g 192 (689)
.+.. .+ .....+.......+.+|+||+++.. ..+..++..+.. ...+
T Consensus 90 ~g~~---~~------------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 90 VGVG---AA------------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp TTHH---HH------------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred hccc---HH------------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 1110 00 0111223333467889999999531 112333322211 1234
Q ss_pred ceEEeeccchhhhh-h-c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 193 SRIIITTRNKQVLR-N-W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 193 ~~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
..||.||...+... . . .....+.++..+.++..+++..++......... ....+++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 56676776554322 1 1 233578999999988888887776332211111 1344777888877
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=6.7e-05 Score=83.30 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=98.3
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
+.+.|.+..+++|.+.+.. +-..++-|.++|++|+|||+||+.+++....+| +.+....-.+....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSSCTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcccch
Confidence 4578899988888876521 123467899999999999999999998775432 23331111111111
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh-------------HHHHHHhcCCCCC--CCCceEE
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF-------------TQLESLIGSLDWL--TPVSRII 196 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~g~~il 196 (689)
......+.++ .......+.+|+||+++.. .....++..+... ..+..||
T Consensus 281 ese~~lr~lF----------------~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 281 ESESNLRKAF----------------EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp HHHHHHHHHH----------------HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred HHHHHHHHHH----------------HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1122222222 2233467899999998531 0122222221111 1233455
Q ss_pred eeccchhhh-hhc----CcceEEEcCCCCHHHHHHHHHHhccCCCC-CChhHHHHHHHHHHHhCCCchh
Q 048627 197 ITTRNKQVL-RNW----EVRKIYEVEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYAQGVPLA 259 (689)
Q Consensus 197 iTtR~~~~~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 259 (689)
.||...+.. ..+ .....++++..+.++..++|..+...... .+.. ...+++.+.|.--|
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 555544322 211 23468999999999999999887633221 1112 45677778776543
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.87 E-value=6.9e-05 Score=84.75 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=82.4
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc------cceEEeeeccchhcCCCChH
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDF------EGTCFLENVRVESQRPGGLA 134 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 134 (689)
..+.+|||+.+++++...+... ....+.++|++|+|||++|+.+++.+.... ...++..+. ..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g~------- 246 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--GT------- 246 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--cc-------
Confidence 3457999999999999998632 334578999999999999999999864321 112221111 00
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhh------hh-h
Q 048627 135 WLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQV------LR-N 207 (689)
Q Consensus 135 ~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~------~~-~ 207 (689)
. ............+......++.+|++| ........+...+. ....++|.||..... .. .
T Consensus 247 --------~-~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 247 --------K-YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred --------c-ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 0 000011111222233334667899999 22222233433333 233556666554431 00 0
Q ss_pred cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 208 WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 208 ~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
......+.++..+.++..+++....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122579999999999999998654
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=8.1e-05 Score=74.44 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=42.0
Q ss_pred CcccchhhHHHHHHhhcCC------CC-CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 64 QLVGVESTVEEIESLLGVE------SK-DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~------~~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.++|.+..++.+...+... .. ....+.|+|++|+|||++|+.++......-...+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 4789999988888777521 11 1357999999999999999999998754333334443
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=2.2e-06 Score=78.42 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=78.1
Q ss_pred CCCCcccEEeccCC-CCCc----ccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCcEEEcccccccccCcccccCCCC
Q 048627 524 PRLNKLVFLNLRGS-KSLK----SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLLLRGSAIEELPSSIERQLRL 598 (689)
Q Consensus 524 ~~l~~L~~L~l~~~-~~~~----~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~i~~l~~L 598 (689)
...++|++|+|++| .+.. .+...+...++|++|+|++|.... .....+...+...++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----------------~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----------------PVAFALAEMLKVNNTL 95 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----------------HHHHHHHHHHHHCSSC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----------------HHHHHHHHHHHhCCCc
Confidence 45678899999988 6433 244455566778888888765211 1112344556666788
Q ss_pred CEEecCCCCCCC----CCCcccCCCCCccEEEe--ecCCCCCc----cCcccCCCCCCCEEEccCCCCc
Q 048627 599 SWLDLTDCKMFK----SLPSSLCKLKSLGVLDL--HGCSNLRR----LPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 599 ~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
++|++++|.+.. .+...+...++|++|+| ++|..... +...+...++|++|++++|.+.
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 888888888743 24556677788888888 66665433 3445556688999999998875
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=9.2e-06 Score=78.18 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=59.2
Q ss_pred ccCCCCCEEecCCCCCCC--CCCcccCCCCCccEEEeecCCCCCc-cCcccCCCCCCCEEEccCCCCc-cccc-------
Q 048627 593 ERQLRLSWLDLTDCKMFK--SLPSSLCKLKSLGVLDLHGCSNLRR-LPECLGQLSSPILLNLAETNIE-RIPK------- 661 (689)
Q Consensus 593 ~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~-~lp~------- 661 (689)
..+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|...+. -...+..+ +|++|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 467889999999998865 5566667889999999998776553 11223334 8999999999987 4542
Q ss_pred hhhccCCCcEEec
Q 048627 662 SIIQLFMLRYLLL 674 (689)
Q Consensus 662 ~~~~l~~L~~L~l 674 (689)
.+..+|+|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567899998863
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=7.8e-05 Score=69.21 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCCCcccchh----hHHHHHHhhcCCCC--CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 61 NKNQLVGVES----TVEEIESLLGVESK--DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 61 ~~~~~vGr~~----~~~~l~~~l~~~~~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+.|++.+. .++.+.+++..... ..+.+.|+|++|+|||+||+.+++........++|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456776553 33445555542211 2267899999999999999999998766555555554
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.78 E-value=2.7e-05 Score=77.34 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+.++|++..+.++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998888775322333467899999999999999999864
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=3.6e-05 Score=74.99 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+.++|.+..+.++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999998888766642122234678999999999999999998754
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=5.7e-06 Score=72.08 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.3
Q ss_pred CcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 64 QLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578999999888887652112234578999999999999998877543
No 223
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1.6e-05 Score=70.81 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=26.5
Q ss_pred cccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCC
Q 048627 528 KLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK 565 (689)
Q Consensus 528 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~ 565 (689)
+|+.||+++|.....--..+..+++|++|+|++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 57788888777544434446678888888888887543
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.68 E-value=0.00057 Score=72.09 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHHhh---cCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 61 NKNQLVGVESTVEEIESLL---GVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l---~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+.++|.+..++.+..++ ..+....+.+.++|++|+|||++|+.+++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3467999999887665544 23333346788999999999999999998865
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.66 E-value=2.9e-05 Score=67.89 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
....++|+|+.|+|||||++.++..+...-...+|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3457899999999999999999998754322255554
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.64 E-value=0.00062 Score=65.62 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=78.6
Q ss_pred CCCCcccchhhHHHHHHhhc---C-------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCC
Q 048627 61 NKNQLVGVESTVEEIESLLG---V-------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRP 130 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~---~-------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 130 (689)
..+.++|.+....++.++.. . +-.-.+-+.|+|++|+||||||+.++..... ..+.+.. .......
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH-HHHHHHH
Confidence 44568888877666655432 1 0011223899999999999999999987652 2233331 1111110
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHH-HHhhcCCcEEEEEcCCCChH----------------HHHHHhcCCCCCC--C
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLN-FRRLSRIKILIVFDDVTCFT----------------QLESLIGSLDWLT--P 191 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~ 191 (689)
... .. ..+..+ ...-...+.++++||++... ....+...+.... .
T Consensus 90 ~~~--~~--------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 90 VGV--GA--------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp TTH--HH--------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred hhH--HH--------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 000 00 001111 11112346799999984210 1122222221111 1
Q ss_pred CceEEeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 192 VSRIIITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 192 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
..-++.||..+..... ......+.++..+.++..+++..++
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 2234455555543321 1234678999999998888887665
No 227
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.58 E-value=0.0018 Score=66.98 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=54.5
Q ss_pred cccCCCCCEEecCCCCCCCCCC-cccCCCCCccEEEeecCCCCCcc-CcccCCCCCCCEEEccCCCCccccc-hhhccCC
Q 048627 592 IERQLRLSWLDLTDCKMFKSLP-SSLCKLKSLGVLDLHGCSNLRRL-PECLGQLSSPILLNLAETNIERIPK-SIIQLFM 668 (689)
Q Consensus 592 i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~ 668 (689)
+..+.+|+.+.+.++ + ..++ ..+.++++|+.++|.. .+..+ ..++.++.+|+.+.+..+ ++.++. ++.+|++
T Consensus 293 F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 445677777777654 2 3333 3567788888888864 24444 346778888999888655 666664 5677888
Q ss_pred CcEEecCCC
Q 048627 669 LRYLLLNCS 677 (689)
Q Consensus 669 L~~L~l~~~ 677 (689)
|+.+.+..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 988887543
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.57 E-value=0.00053 Score=67.16 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=89.2
Q ss_pred cCCCCCcccchhhHHHHHHhhcC--C--------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhc
Q 048627 59 RDNKNQLVGVESTVEEIESLLGV--E--------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQ 128 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 128 (689)
....+.++|.+..++++.++... . -.-.+-+.|+|++|+||||||+.++..... ..+.+.. .....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~-~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecH-HHHHH
Confidence 34456789998877776654421 0 011223889999999999999999987752 2233331 11111
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCCCC-
Q 048627 129 RPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWLTP- 191 (689)
Q Consensus 129 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~- 191 (689)
..... .... ....+...-...+.++++||++.. .....+...+.....
T Consensus 112 ~~~~~--~~~~-------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 112 MFVGV--GAAR-------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp STTTH--HHHH-------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HHhhH--HHHH-------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 10000 0000 001111212234678999998421 112223222221111
Q ss_pred -CceEEeeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 192 -VSRIIITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 192 -g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
...++.+|..+..... ......+.++..+.++..+++..++.+.....+. ....++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 1233445554433221 1344688999999999888887765321111111 1334666666654
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=0.0013 Score=64.07 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPG 131 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 131 (689)
..+.|.++..++|.+.+.. +-.-.+-++|+|++|+||||||+.++..... ..+++.. ......
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g-~~l~~~-- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKG-PELLNM-- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEET-TTTCSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc-HHHHhh--
Confidence 4566777766666654310 1111223899999999999999999987653 2333331 111111
Q ss_pred ChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCChH-------------HHHHHhcCCCC--CCCCceEE
Q 048627 132 GLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCFT-------------QLESLIGSLDW--LTPVSRII 196 (689)
Q Consensus 132 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~g~~il 196 (689)
......+. +.. .....-...+.++++|+++... ....+...+.. .....-++
T Consensus 84 ~~~~~~~~-i~~------------vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 84 YVGESERA-VRQ------------VFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp TTHHHHHH-HHH------------HHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred hhhHHHHH-HHH------------HHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEE
Confidence 11111111 111 1111112456789999986421 01111111111 11223345
Q ss_pred eeccchhhhhh-----cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 197 ITTRNKQVLRN-----WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 197 iTtR~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.+|..+.+... -.....+.++..+.++..+++....
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 56665544322 1345688999999999999998775
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=0.00047 Score=72.66 Aligned_cols=178 Identities=14% Similarity=0.146 Sum_probs=93.8
Q ss_pred ccCCCCCcccchhhHHHHHHhhc---CC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchh
Q 048627 58 LRDNKNQLVGVESTVEEIESLLG---VE-------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVES 127 (689)
Q Consensus 58 ~~~~~~~~vGr~~~~~~l~~~l~---~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 127 (689)
+......++|.+..+.++.+... .. -.-++-|.|+|++|+||||||+.++..... ..+++. .....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHH
Confidence 33455679999988777766542 10 011334899999999999999999987652 223333 11111
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCC--
Q 048627 128 QRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWL-- 189 (689)
Q Consensus 128 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~-- 189 (689)
...... . ..-+..+... .-...+.++++|+++.. ..+..++..+..+
T Consensus 102 ~~~~g~--~-~~~v~~lfq~------------a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 102 EMFVGV--G-AARVRDLFET------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp SSCTTH--H-HHHHHHHTTT------------SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred Hhhhhh--H-HHHHHHHHHH------------HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 110111 0 1111111111 00123578999999421 1123333322211
Q ss_pred CCCceEEeeccchhhhhh--c---CcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 190 TPVSRIIITTRNKQVLRN--W---EVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 190 ~~g~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
..+..++.||..++.+.. . .....+.++..+.++..+++..++.+....++. ....++..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 223445556665544321 1 234588999999999999988775322111111 1345666676665
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00037 Score=78.75 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=82.9
Q ss_pred CCcccchhhHHHHHHhhcCCC-------CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHH
Q 048627 63 NQLVGVESTVEEIESLLGVES-------KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAW 135 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 135 (689)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ....... ....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~-~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEK-HSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSS-CCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccc-cccc-
Confidence 468999998888877765211 11237899999999999999999998744333344444 2222222 1110
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh--HHHHHHhcCCCC-----------CCCCceEEeeccch
Q 048627 136 LRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF--TQLESLIGSLDW-----------LTPVSRIIITTRNK 202 (689)
Q Consensus 136 l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~g~~iliTtR~~ 202 (689)
.......++. ...-+|+||+++.. .....|+..+.. .....+||.||...
T Consensus 568 --------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 --------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -----------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred --------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0011111111 22348899999643 222333222211 12345788888621
Q ss_pred -----hh----hhh------cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 203 -----QV----LRN------WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 203 -----~~----~~~------~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.+ ... ......+.+.+++.++..+++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 00 000 1223589999999999888876654
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.53 E-value=0.00041 Score=68.39 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=25.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..++.+.++|++|+|||+||+.+++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 346788999999999999999999988533
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=0.00064 Score=73.16 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHhhc----CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 64 QLVGVESTVEEIESLLG----VESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~----~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.++|.+...+.+.+.+. ........+.|+|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47888877777655432 112245689999999999999999999987543
No 234
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.46 E-value=0.0017 Score=67.24 Aligned_cols=234 Identities=15% Similarity=0.145 Sum_probs=122.9
Q ss_pred hhhhhCCCCcceEEeccccCCCCCcccccccCcccccceeEEEecCCCCCCCCCCC--CcCCceeeecCCCCccccCccc
Q 048627 419 PKTFTKMCKLRFLKFYSSSFNGENKCKVSYLQDPAFAEVKYFHWHGYPLKSLPSNL--SAEKLVFLEVPDNNIEQLGDCV 496 (689)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~L~~l~~~~~~~~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~ 496 (689)
..+|..|.+|+.+.+.++. .......+..++ +|+.+.+..+ ++.++... .+..|+.+.+..+.. .+.+..
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~-----~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~ 226 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCG-----KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFA 226 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTT
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCC-----CceEEEcCCC-ceEeCchhhccccccceeecCCCce-Eeehhh
Confidence 4567777777777775431 110111233332 3333333332 33333322 344555555544322 112222
Q ss_pred ccCccchhhccccCccccccCCCCCCCCCCCcccEEeccCCCCCcccCccCCCCCCCCEEeccCCCCCCCCCCCCcCCCc
Q 048627 497 KHYSKLNRIIHAACNKLIAKTPNPTLMPRLNKLVFLNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS 576 (689)
Q Consensus 497 ~~l~~L~~l~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~l~~~p~~~~~~L~ 576 (689)
.....|+.+.+.... ..+. ...+.++..|+.+.+..+. ...-...+..+..++.+...... +.........+|+
T Consensus 227 ~~~~~l~~i~ip~~~---~~i~-~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF---TELG-KSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI-VPEKTFYGCSSLT 300 (394)
T ss_dssp TTTCCCCEEEECTTC---CEEC-SSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE-ECTTTTTTCTTCC
T ss_pred cccCCCceEEECCCc---eecc-cccccccccceeEEcCCCc-ceeeccccccccccceeccCcee-ecccccccccccc
Confidence 223344444443221 1111 1245556667777665433 22222334456666666554321 1111111225677
Q ss_pred EEEcccccccccCc-ccccCCCCCEEecCCCCCCCCC-CcccCCCCCccEEEeecCCCCCcc-CcccCCCCCCCEEEccC
Q 048627 577 WLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSL-PSSLCKLKSLGVLDLHGCSNLRRL-PECLGQLSSPILLNLAE 653 (689)
Q Consensus 577 ~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~ 653 (689)
.+.+..+ ++.++. .+..+.+|+.+++..+ + ..+ ...+.++++|+.+.+..+ +..+ ..++.++.+|+.+++..
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7777543 555544 4677899999999754 3 344 346788999999999763 4444 34788899999999864
Q ss_pred CCCccccchhhccCCCcEE
Q 048627 654 TNIERIPKSIIQLFMLRYL 672 (689)
Q Consensus 654 ~~l~~lp~~~~~l~~L~~L 672 (689)
+ ++.+...+.++++|+.+
T Consensus 376 ~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 R-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-GGGGGGGBCTTCEEEEE
T ss_pred C-CEEhhheecCCCCCcEE
Confidence 3 55555566677777654
No 235
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.41 E-value=0.00014 Score=69.92 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCCCCccEEEeecCCCCC--ccCcccCCCCCCCEEEccCCCCccccchhhccC--CCcEEecCCCCCCCCCC
Q 048627 617 CKLKSLGVLDLHGCSNLR--RLPECLGQLSSPILLNLAETNIERIPKSIIQLF--MLRYLLLNCSEGHESIP 684 (689)
Q Consensus 617 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~~p 684 (689)
.++++|+.|+|++|...+ .+|..+..+++|+.|+|++|.++++. .+..+. +|+.|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 468899999999998776 66677778999999999999999763 355555 89999999999987665
No 236
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.007 Score=62.45 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=41.1
Q ss_pred ccCCCCCEEecCCCCCCCCCC-cccCCCCCccEEEeecCCCCCcc-CcccCCCCCCCEEEccCCCCccccc-hhhccCCC
Q 048627 593 ERQLRLSWLDLTDCKMFKSLP-SSLCKLKSLGVLDLHGCSNLRRL-PECLGQLSSPILLNLAETNIERIPK-SIIQLFML 669 (689)
Q Consensus 593 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L 669 (689)
..+.+|+.+.+... + ..++ ..+.++.+|+.+.|..+ +..+ ..++.++.+|+.+.+-. .++.++. .+.+|.+|
T Consensus 285 ~~c~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFSSR-I-TELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred ccccccccccCCCc-c-cccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence 34455555555422 1 2222 24555666666666541 2333 23555666666666643 3555543 34566667
Q ss_pred cEEecCCC
Q 048627 670 RYLLLNCS 677 (689)
Q Consensus 670 ~~L~l~~~ 677 (689)
+.+.+.++
T Consensus 360 ~~i~~~~~ 367 (394)
T 4gt6_A 360 NNIEYSGS 367 (394)
T ss_dssp CEEEESSC
T ss_pred CEEEECCc
Confidence 66666543
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00056 Score=77.25 Aligned_cols=150 Identities=16% Similarity=0.227 Sum_probs=84.7
Q ss_pred CCCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcC-
Q 048627 62 KNQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQR- 129 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 129 (689)
.+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++......| +.+. .......
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 34689999999988887742 223456799999999999999999998765433 3332 1111111
Q ss_pred CCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCCCCCc
Q 048627 130 PGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWLTPVS 193 (689)
Q Consensus 130 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~g~ 193 (689)
......... ..+.......+.++++|+++.. ..+-.+..... ...+.
T Consensus 279 ~g~~~~~l~----------------~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 279 AGESESNLR----------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp TTHHHHHHH----------------HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred hhhHHHHHH----------------HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 001111111 1112222345689999998321 11222222222 12334
Q ss_pred eEEeeccchhhhh-hc----CcceEEEcCCCCHHHHHHHHHHhc
Q 048627 194 RIIITTRNKQVLR-NW----EVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 194 ~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
.++.||....... .+ .....+.+...+.++..+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5555655442221 11 223567888899999999988765
No 238
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.30 E-value=0.00067 Score=69.69 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998874
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00069 Score=67.13 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCCcccch----hhHHHHHHhhcCCCC-CeeEEEEEecCCCCHHHHHHHHHHHhh-ccccceEEee
Q 048627 62 KNQLVGVE----STVEEIESLLGVESK-DVWALGIWGIGGIGKTTIARAIFDKIS-GDFEGTCFLE 121 (689)
Q Consensus 62 ~~~~vGr~----~~~~~l~~~l~~~~~-~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 121 (689)
.+.|++.+ ..++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.|+.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34566533 234445555542111 246788999999999999999999876 5444455554
No 240
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.90 E-value=0.011 Score=60.73 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=29.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+.+|.++|.+|+||||++..++..+..+-..+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999988776533444433
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.88 E-value=0.0019 Score=73.09 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHhhcCC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 63 NQLVGVESTVEEIESLLGVE-------SKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46889999888887766411 11234789999999999999999998873
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.78 E-value=0.12 Score=52.81 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCC-cccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEE
Q 048627 573 GNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLP-SSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLN 650 (689)
Q Consensus 573 ~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 650 (689)
.+|+.+.+..+ +..+.. .+..+.+|+.+.+..+ + ..++ ..+..+++|+.+.+.++.....-..++.++.+|+.+.
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 34555555433 333332 3456777888887654 2 3333 3567789999999977443333345778889999999
Q ss_pred ccCCCCccccc-hhhccCCCcEEecC
Q 048627 651 LAETNIERIPK-SIIQLFMLRYLLLN 675 (689)
Q Consensus 651 l~~~~l~~lp~-~~~~l~~L~~L~l~ 675 (689)
+.. +++.++. ++.++.+|+.+.+-
T Consensus 317 lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 317 LPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred cCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 864 3666664 46778888887764
No 243
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.77 E-value=0.0018 Score=58.37 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhc--CCC--CC-----------C
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL--KDE--NV-----------I 151 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~--~~-----------~ 151 (689)
..|.|++-.|.||||.|...+-+..++--.+.++...... .. .+...+.+.+.-.+. +.. +. .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777777999999999998865554455555433221 11 233333333210000 000 00 0
Q ss_pred cchHHHHHhhcCCcE-EEEEcCCCC--------hHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 152 PDIDLNFRRLSRIKI-LIVFDDVTC--------FTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 152 ~~~~~l~~~l~~~~~-LlVlDdv~~--------~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
......++.+...+| |||||++.. .+.+-.++.. ......||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 223344555555544 999999832 2333333322 34567899999986
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.0023 Score=71.07 Aligned_cols=172 Identities=14% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCcccchhhHHHHHHhhcC-----------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccch-hcCC
Q 048627 63 NQLVGVESTVEEIESLLGV-----------ESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVE-SQRP 130 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 130 (689)
..+.|.+...++|.+.+.. +...++-|.++|++|.|||.+|+++++.....| +.....+. +...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~l~s~~v 552 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPELLTMWF 552 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccchhhcccc
Confidence 4567888888888776531 112345688999999999999999999875332 11111110 1100
Q ss_pred CChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcEEEEEcCCCCh----------------HHHHHHhcCCCCCCC--C
Q 048627 131 GGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKILIVFDDVTCF----------------TQLESLIGSLDWLTP--V 192 (689)
Q Consensus 131 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~--g 192 (689)
..-....++++ ...-+..+.+|+||+++.. .....|+..+..... +
T Consensus 553 Gese~~vr~lF----------------~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 553 GESEANVREIF----------------DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp SSCHHHHHHHH----------------HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred chHHHHHHHHH----------------HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 11111112221 2222456899999998521 012233332222222 2
Q ss_pred ceEEeeccchhhh-----hhcCcceEEEcCCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCc
Q 048627 193 SRIIITTRNKQVL-----RNWEVRKIYEVEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYAQGVP 257 (689)
Q Consensus 193 ~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (689)
.-||-||..++.. ..-.....+.++..+.++..++|..+....... .+ -....+++.+.|.-
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~--~dl~~la~~t~g~S 683 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KD--VDLEFLAKMTNGFS 683 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CC--CCHHHHHHhCCCCC
Confidence 2334455433221 111345678888888888888887776322111 11 11345566666643
No 245
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.0024 Score=62.41 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=25.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++.|+|++|+|||+||.+++.. ....+.|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 356789999999999999999886 222345555
No 246
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.69 E-value=0.093 Score=53.91 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=57.8
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccCCCCCccEEEeecCCCCCccC-cccCCCCCCCEEEccCCCCcccc-chhhccCCC
Q 048627 592 IERQLRLSWLDLTDCKMFKSLPSSLCKLKSLGVLDLHGCSNLRRLP-ECLGQLSSPILLNLAETNIERIP-KSIIQLFML 669 (689)
Q Consensus 592 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 669 (689)
+..+.+|+.+.+.++.. .--...+.++++|+.+.+.. .+..++ ..+.++.+|+.+.+..+ ++.+. .++.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 45677888888865432 22234567789999999864 344454 46788899999999654 67665 456788999
Q ss_pred cEEecCCC
Q 048627 670 RYLLLNCS 677 (689)
Q Consensus 670 ~~L~l~~~ 677 (689)
+.+.+-.+
T Consensus 337 ~~i~ip~s 344 (394)
T 4gt6_A 337 ERIAIPSS 344 (394)
T ss_dssp CEEEECTT
T ss_pred CEEEECcc
Confidence 99988543
No 247
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.57 E-value=0.0055 Score=58.26 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+..|+.........|.++|++|.|||.+|..+++.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 33556665332334579999999999999999999864
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.56 E-value=0.0082 Score=56.09 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
|.+.+..+-....++.|+|++|+||||||..++. . .-..++|+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 4444432223345899999999999999999988 2 224566665
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.53 E-value=0.00099 Score=60.38 Aligned_cols=26 Identities=23% Similarity=-0.094 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++.|+|+.|+||||++..++.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999888877543
No 250
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.48 E-value=0.0024 Score=65.09 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHhhc-------------CCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 65 LVGVESTVEEIESLLG-------------VESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~-------------~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6888888888877661 1112345788999999999999999998874
No 251
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.44 E-value=0.0015 Score=59.17 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=38.4
Q ss_pred CCCCCCCCEEeccCCCCCCCC-----CC--CCcCCCcEEEccccccc-----ccCcccccCCCCCEEecCCCCCCC----
Q 048627 547 IFNLEFLTKLDLSGCSKLKRL-----PE--ISSGNISWLLLRGSAIE-----ELPSSIERQLRLSWLDLTDCKMFK---- 610 (689)
Q Consensus 547 l~~l~~L~~L~l~~~~~l~~~-----p~--~~~~~L~~L~l~~~~l~-----~l~~~i~~l~~L~~L~l~~~~~~~---- 610 (689)
+.+-+.|++|+|++|..+..- -+ .....|+.|+|++|.++ .+...+..-+.|+.|+|++|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888888765222210 00 00134555555555554 233334444555555555555422
Q ss_pred CCCcccCCCCCccEEEeec
Q 048627 611 SLPSSLCKLKSLGVLDLHG 629 (689)
Q Consensus 611 ~lp~~~~~l~~L~~L~l~~ 629 (689)
.+...+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 1222333344455555543
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.44 E-value=0.013 Score=58.30 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...+++|+|+.|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876544
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.43 E-value=0.0049 Score=56.80 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=33.8
Q ss_pred chhhHHHHHHhhcCC-CCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 68 VESTVEEIESLLGVE-SKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 68 r~~~~~~l~~~l~~~-~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
|++.++++.+.+... .....+|+|.|+.|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667776666532 34567999999999999999999988764
No 254
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.37 E-value=0.036 Score=55.77 Aligned_cols=155 Identities=11% Similarity=-0.063 Sum_probs=96.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh-ccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS-GDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~ 163 (689)
-.++..++|+.|.||++.|..+...+. ..|+....+. .. .. .++..+.+..-.. -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PN-TDWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TT-CCHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CC-CCHHHHHHHhcCc----------------CCcc
Confidence 356889999999999999999998754 3343221222 11 12 4555554433211 1235
Q ss_pred CcEEEEEcCCCC---hHHHHHHhcCCCCCCCCceEEeeccc-------hhhhhh-cCcceEEEcCCCCHHHHHHHHHHhc
Q 048627 164 IKILIVFDDVTC---FTQLESLIGSLDWLTPVSRIIITTRN-------KQVLRN-WEVRKIYEVEALEYHHALELFSRHA 232 (689)
Q Consensus 164 ~~~LlVlDdv~~---~~~~~~l~~~l~~~~~g~~iliTtR~-------~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 232 (689)
++-++|+|+++. ....+.+...+....+++.+|+++.. ..+... ......++..+++.++...++...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 566888899865 24455565555444567777766532 123333 3345789999999999998887776
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCchhHHH
Q 048627 233 FKRNHPDVGYEKLSSNVMKYAQGVPLALKV 262 (689)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 262 (689)
-..+. .-..+.+..+++.++|...++..
T Consensus 156 ~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 33221 12245688899999998886654
No 255
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.35 E-value=0.0012 Score=66.66 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=63.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccce-EEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGT-CFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
.+++|.|+.|+||||+.+.+...+....... +.+.+..+.... .. . ....+.............+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~-~----~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SK-K----CLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CS-S----SEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-cc-c----cceeeeeeccccCCHHHHHHHHhhhCc
Confidence 4899999999999999999988765432222 222211110000 00 0 000000001111234457778888888
Q ss_pred EEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchhhh
Q 048627 166 ILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVL 205 (689)
Q Consensus 166 ~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~~~ 205 (689)
=+|++|++.+.+.++.+... ...|..|++|+......
T Consensus 198 dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 89999999987766654443 13466788888776443
No 256
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.32 E-value=0.025 Score=58.45 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=36.0
Q ss_pred hHHHHHHhhcCC-------CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 71 TVEEIESLLGVE-------SKDVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 71 ~~~~l~~~l~~~-------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
-.+++.+++... ...+++|.|+|.+|+||||++..++..+..+ -..+..++
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345566666421 1346899999999999999999999987765 33444443
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.32 E-value=0.014 Score=66.80 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHhhcCC------CC-CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 64 QLVGVESTVEEIESLLGVE------SK-DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 64 ~~vGr~~~~~~l~~~l~~~------~~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++|.+..++.+...+... .+ ....+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999888887776421 11 2357899999999999999999998644
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.31 E-value=0.004 Score=57.76 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=31.1
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
-+++|.+.+........+|+|.|+.|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555555543334567999999999999999999988765
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.31 E-value=0.002 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.26 E-value=0.014 Score=57.87 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
...+|+|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998876543333443
No 261
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.22 E-value=0.014 Score=58.40 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...|...|. .+-....++.|+|++|+||||||..++......-..++|++
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 355666664 23234578999999999999999999988765444566776
No 262
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.21 E-value=0.0065 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999876
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.17 E-value=0.0021 Score=64.68 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..++|++..++.+...+..+ ..+.++|++|+|||++|+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46899999999888877532 358899999999999999999877543
No 264
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0093 Score=55.25 Aligned_cols=27 Identities=22% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.09 E-value=0.0033 Score=56.22 Aligned_cols=25 Identities=16% Similarity=0.059 Sum_probs=22.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|+|.|++|+||||+|+.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.08 E-value=0.0071 Score=59.05 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.3
Q ss_pred CCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 82 ESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 82 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....+.+|+|.|+.|+||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456789999999999999999999887654
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.02 E-value=0.036 Score=54.39 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=35.8
Q ss_pred hhhHHHHHHhhcCC------CCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 69 ESTVEEIESLLGVE------SKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 69 ~~~~~~l~~~l~~~------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
+.-.++|.+.+... .....+|+|+|++|+||||++..++..+...-..+.++
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 34455666666422 13467999999999999999999998876543333333
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.99 E-value=0.0027 Score=57.25 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEG 116 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 116 (689)
|.|+|+|++|+|||||++.+..+....|..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~ 31 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEE
Confidence 458899999999999999998876555543
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.99 E-value=0.025 Score=55.01 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=27.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhcc--ccceEEee
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGD--FEGTCFLE 121 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~ 121 (689)
++.|+|++|+||||||.+++...... -..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999998886544 34567776
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.017 Score=59.42 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=29.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++|.++|++|+||||++..++..++..-..+.++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999988765533444443
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.97 E-value=0.0076 Score=54.99 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..|.|.|++|+||||+|+.++..+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987643
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.96 E-value=0.0042 Score=56.34 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.|.|+|++|+||||+|+.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.95 E-value=0.0023 Score=63.86 Aligned_cols=27 Identities=22% Similarity=-0.013 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...++|+|++|+|||||++.+++.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 347899999999999999999887654
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.94 E-value=0.0074 Score=55.50 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+|+|.|++|+||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998875
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.92 E-value=0.0045 Score=56.94 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|+|.|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998873
No 276
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.91 E-value=0.0045 Score=65.29 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 63 NQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35889999998888777422 3688999999999999999998764
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.84 E-value=0.005 Score=55.50 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.81 E-value=0.0083 Score=52.94 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999987654
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.81 E-value=0.0066 Score=54.93 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=33.1
Q ss_pred cchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 67 GVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....-+..+..++.. -.....+.|+|++|+||||+|..+++.+.+
T Consensus 40 ~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 40 EFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334456677777752 222347899999999999999999998754
No 280
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.79 E-value=0.0044 Score=62.80 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=36.3
Q ss_pred cCCCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 59 RDNKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 59 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+...+.++|.+..++.+........ ...|.|+|++|+|||++|+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3345569999986665544432222 23488999999999999999998764
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.79 E-value=0.021 Score=55.97 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999988765433444443
No 282
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.78 E-value=0.027 Score=56.58 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc------cccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG------DFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 121 (689)
..|..+|..+-....++.|+|++|+||||||..++..... .-..++|++
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455555323334578999999999999999999987432 234567776
No 283
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.75 E-value=0.0087 Score=59.13 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++.++|+|+|-|||||||.|..++.-+...-..+..++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999999988776544555554
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.75 E-value=0.0049 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.74 E-value=0.0076 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.68 E-value=0.0074 Score=57.47 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=28.5
Q ss_pred hHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 71 TVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 71 ~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+.++.+.+......+..|+|.|++|+||||+|+.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344443332223356789999999999999999998876
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.66 E-value=0.011 Score=53.56 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...+|+|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999988754
No 288
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0056 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988754
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.64 E-value=0.01 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=23.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..|+|.|++|+||||+|+.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.60 E-value=0.0098 Score=59.02 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=32.7
Q ss_pred cchhhHHHHHHhhc--CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 67 GVESTVEEIESLLG--VESKDVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 67 Gr~~~~~~l~~~l~--~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
+.+.-++++.+.+. ...+....|.|+|++|+||||+++.++..+.-.|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444455544442 1234456789999999999999999998865444
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.60 E-value=0.043 Score=53.81 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 35799999999999999999999887643 3444443
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.60 E-value=0.017 Score=57.26 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
...|..++ .+-....++.|.|.+|+||||||..++.....+-..++|++.- .....+...+...
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-------~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-------MGKKENIKRLIVT 118 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-------SCHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-------CCHHHHHHHHHHH
Confidence 34444445 2333446889999999999999999998765443566676621 3345555555544
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.58 E-value=0.016 Score=59.92 Aligned_cols=30 Identities=27% Similarity=0.671 Sum_probs=24.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccce
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGT 117 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 117 (689)
.++|+|.+|+|||||+..+......++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 578999999999999999998865444333
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.54 E-value=0.0059 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.|.|+|++|+||||+|+.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998763
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.53 E-value=0.0079 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.315 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
..+++|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.53 E-value=0.0082 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|++|+||||+|+.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.52 E-value=0.0083 Score=57.48 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|+|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.52 E-value=0.0059 Score=54.62 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|+|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.51 E-value=0.011 Score=54.28 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|+|.|+.|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998876
No 300
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.50 E-value=0.014 Score=60.12 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHHhhcC------------CCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 63 NQLVGVESTVEEIESLLGV------------ESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 63 ~~~vGr~~~~~~l~~~l~~------------~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
.+++|.+..++.+...+.. ....++.|.++|++|+||||+|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3577888777777555411 01134568899999999999999999987543
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.48 E-value=0.0073 Score=55.95 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...+|+|.|+.|+||||+++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3568999999999999999999987653
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.48 E-value=0.0068 Score=55.00 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEG 116 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 116 (689)
++++|.|+.|+|||||++.+...+...|..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 578999999999999999999876544433
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.47 E-value=0.0066 Score=55.94 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.45 E-value=0.042 Score=55.15 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+++|+|+.|+||||++..++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35799999999999999999999887643 3444443
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.44 E-value=0.016 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.257 Sum_probs=24.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
..|+|.|++|+||||+|+.++..+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876543
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.43 E-value=0.016 Score=56.60 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+.+|.|.|++|+||||+|+.+..++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999988653
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.43 E-value=0.014 Score=54.20 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=24.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...|+|.|++|+||||+|+.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987544
No 308
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.40 E-value=0.0095 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.39 E-value=0.01 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+..|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999988753
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.37 E-value=0.0087 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|.|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.34 E-value=0.0091 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998875
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.33 E-value=0.013 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|+|.|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.33 E-value=0.015 Score=57.41 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHhhcCC--CCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 65 LVGVESTVEEIESLLGVE--SKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~--~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|-...+..+...+... ...+.+|+|.|+.|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555666655544422 34577999999999999999999887765
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.33 E-value=0.0079 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 315
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.32 E-value=0.009 Score=54.27 Aligned_cols=28 Identities=21% Similarity=0.397 Sum_probs=24.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..++|+|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4578999999999999999999987543
No 316
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.31 E-value=0.015 Score=55.30 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=28.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..++.|.|++|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458899999999999999999877654445666765
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.30 E-value=0.011 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 318
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.29 E-value=1.3 Score=44.96 Aligned_cols=107 Identities=9% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCC---cCCCcEEEcccccccccCc-ccccCCCCCEEecCCCCCCCCCCcccCCCCCcc
Q 048627 548 FNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLLLRGSAIEELPS-SIERQLRLSWLDLTDCKMFKSLPSSLCKLKSLG 623 (689)
Q Consensus 548 ~~l~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 623 (689)
..+.+|+.+.+..+ ++.++... ..+|+.+.+..+ +..++. .+..+.+|+.+.+.++.+..--...+.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 34555666665432 33333222 245666666533 444443 356778888888877665322334677788888
Q ss_pred EEEeecCCCCCccC-cccCCCCCCCEEEccCCCCcccc
Q 048627 624 VLDLHGCSNLRRLP-ECLGQLSSPILLNLAETNIERIP 660 (689)
Q Consensus 624 ~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~lp 660 (689)
.+.|.. .+..+. .++.++.+|+.+.+..+ ++.+.
T Consensus 314 ~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 314 SVTLPT--ALKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EEEcCc--cccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 888864 234443 36677778887777433 44443
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.28 E-value=0.0072 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=18.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999988754
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.28 E-value=0.013 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
....+|+|.|++|+||||+|+.++..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998865
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.27 E-value=0.013 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
....|+|.|++|+||||+|+.++..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998763
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.012 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.26 E-value=0.0092 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..++|+|+|++|+||||+++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346789999999999999999988764
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.24 E-value=0.028 Score=56.88 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
..++.+.+........+|+|+|.+|+|||||+..++..+...-..+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 3344444433345678999999999999999999998865443333333
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.23 E-value=0.011 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
...|+|+|++|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.22 E-value=0.011 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998764
No 327
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.22 E-value=0.028 Score=58.12 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++|+|+|.+|+||||+|..++..+...-..+.++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999988765433344443
No 328
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.20 E-value=0.0091 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+.|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 329
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.16 E-value=0.014 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.12 E-value=0.013 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 331
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.10 E-value=0.02 Score=53.10 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...|+|.|+.|+||||+|+.++..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999886543
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.09 E-value=0.015 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
....+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.08 E-value=0.014 Score=56.24 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.08 E-value=0.014 Score=55.92 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988754
No 335
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.05 E-value=0.093 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.8
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++|+|+|.+|+||||++..++..+...-..+..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999988765433344444
No 336
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.01 E-value=0.029 Score=55.71 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=45.1
Q ss_pred cchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC
Q 048627 67 GVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK 146 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 146 (689)
|...-...|.+.+. +-....++.|.|.+|+||||||..++..+...-..+.|++. . .....+...++.....
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------E-ms~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------E-MSAEQLALRALSDLTS 99 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------S-SCHHHHHHHHHHHHHC
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------C-CCHHHHHHHHHHHhhC
Confidence 33333444555553 22334588899999999999999999886544345566552 1 3455666666555433
No 337
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.01 E-value=0.021 Score=57.39 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...|..+|. .+-....++.|+|.+|+||||||.+++......-..++|++
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445555663 22233468999999999999999999988655445677777
No 338
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.00 E-value=0.022 Score=57.18 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...|...|. .+-....++.|+|++|+||||||.+++......-..++|++
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345556664 23234568999999999999999999987654445667776
No 339
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.97 E-value=0.025 Score=53.66 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc------cccceEEee
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG------DFEGTCFLE 121 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 121 (689)
.|..+|..+-....++.|+|++|+|||||++.++..+.. .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344455322223468999999999999999999986322 134567766
No 340
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.96 E-value=0.02 Score=54.01 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=27.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++|.|++|+|||||++.++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999977543333455554
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.96 E-value=0.015 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 342
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.95 E-value=0.029 Score=56.98 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=60.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceE-EeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTC-FLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~ 163 (689)
...+++|+|+.|+||||+++.+...+.....+.+ ++....+.... .... +..+..-..........+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-~~~~-----~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HKKS-----IVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-CSSS-----EEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-cCce-----EEEeeecCCCHHHHHHHHHHHhhh
Confidence 3468999999999999999999987654323333 22210000000 0000 000000000112334566666766
Q ss_pred CcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 164 IKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 164 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
.+=+|++|++.+.+.....+.. ...|..|+.|+....
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~---~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 245 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HTTTCEEEECCCCCS
T ss_pred CcCEEEECCCCCHHHHHHHHHH---HhcCCEEEEEECcch
Confidence 6778999999876655443332 134666777776553
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.94 E-value=0.019 Score=53.26 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+|+|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988765
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.94 E-value=0.015 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|+|+|++|+||||+|+.++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.93 E-value=0.032 Score=52.43 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 75 IESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 75 l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
+...+..+-....+++|.|+.|+|||||++.++..+
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444443222334689999999999999999998754
No 346
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.89 E-value=0.015 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.88 E-value=0.014 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 348
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.88 E-value=0.017 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 349
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.88 E-value=0.067 Score=55.06 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=35.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLLN 143 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 143 (689)
..++|.|.+|+|||+|+..+++.+.. +-+.++|+- +++ .......+.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE---R~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE---RTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC---CHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC---cchHHHHHHHHhhhc
Confidence 46889999999999999999998643 334445543 332 223455666666543
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.88 E-value=0.016 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+|+|.|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998766
No 351
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.87 E-value=0.14 Score=53.55 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=28.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
...++.|.|.+|+||||||..++..+... -..++|++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34588999999999999999999886542 33566665
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.86 E-value=0.016 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.84 E-value=0.016 Score=53.40 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~ 108 (689)
.|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.84 E-value=0.027 Score=55.33 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.5
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+++|+|++|+||||++..++..+... .+.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999887654 3444444
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.83 E-value=0.018 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|+|+|++|+||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987753
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.83 E-value=0.035 Score=51.95 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 69 ESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 69 ~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
++..+.+...+. ......|+|+|.+|+|||||+..+.......
T Consensus 23 ~~~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 23 KRLADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334455555553 2346788999999999999999999875433
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.76 E-value=0.01 Score=59.15 Aligned_cols=103 Identities=17% Similarity=0.042 Sum_probs=58.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCcE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIKI 166 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 166 (689)
..++|+|+.|+|||||++.++..+.. ..+.+.+....+.... .... . . .+... ........+...+...+=
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~~~---~-i-~~~~g-gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HHKN---Y-T-QLFFG-GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SCSS---E-E-EEECB-TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cchh---E-E-EEEeC-CChhHHHHHHHHhhhCCC
Confidence 47999999999999999998876543 3456666543221100 0000 0 0 00000 122444556666777778
Q ss_pred EEEEcCCCChHHHHHHhcCCCCCCCCc-eEEeeccch
Q 048627 167 LIVFDDVTCFTQLESLIGSLDWLTPVS-RIIITTRNK 202 (689)
Q Consensus 167 LlVlDdv~~~~~~~~l~~~l~~~~~g~-~iliTtR~~ 202 (689)
++++|++...+.++.+. .+. .|. .+++||...
T Consensus 243 ilildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAG 275 (330)
T ss_dssp EEEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECS
T ss_pred EEEEcCCChHHHHHHHH-HHh---cCCCEEEEEEccc
Confidence 89999998755444432 221 232 366666544
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.76 E-value=0.017 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+.+|+|.|+.|+||||+++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998763
No 359
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.75 E-value=0.035 Score=51.21 Aligned_cols=35 Identities=11% Similarity=-0.151 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
-.|.+.|.||+||||+|..++.....+-..+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34778999999999999999988655433333333
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.74 E-value=0.018 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.74 E-value=0.02 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|+|+|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998864
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.72 E-value=0.018 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 363
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.027 Score=52.50 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=32.6
Q ss_pred cchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 67 GVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 67 Gr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
+.+...+.+...+. ....+.|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34445555555552 2356789999999999999999999876544
No 364
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.72 E-value=0.0042 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..++|.|.+|+|||+|+..+++.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 46789999999999999999988653
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.70 E-value=0.033 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 366
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.68 E-value=0.11 Score=54.45 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFE 115 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 115 (689)
+.+.|.|.+|+||||++..+...+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38899999999999999999988654433
No 367
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.66 E-value=0.062 Score=45.17 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=36.4
Q ss_pred EEecCCCCCC-CCCCcccCCCCCccEEEeecCCCCCccCcccCCCCCCCEEEccCCCCc
Q 048627 600 WLDLTDCKMF-KSLPSSLCKLKSLGVLDLHGCSNLRRLPECLGQLSSPILLNLAETNIE 657 (689)
Q Consensus 600 ~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 657 (689)
.++-+++.+. ..+|..+ .++|++|+|++|.+...-+..+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666652 2666542 346888888886654443445677788888888877654
No 368
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.66 E-value=0.12 Score=54.04 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHHHhc
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLLNLL 145 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 145 (689)
...|...+ .+-....++.|.|.+|+||||||..++..+.. .-..++|++.- .+...+...++....
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-------~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-------MPAAQLTLRMMCSEA 253 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-------SCHHHHHHHHHHHHT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-------CCHHHHHHHHHHHHc
Confidence 34455555 23333468899999999999999999988653 23456666521 334556666554433
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.66 E-value=0.013 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.447 Sum_probs=22.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 370
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.63 E-value=0.035 Score=54.29 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~ 121 (689)
...+++|+|++|+||||++..++..+.. .-..+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4579999999999999999999988763 322344443
No 371
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.60 E-value=0.019 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.60 E-value=0.021 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988744
No 373
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.57 E-value=0.084 Score=48.24 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=54.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRI 164 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 164 (689)
...+..++|..|.||||.|...+.+...+-..++++..... .. .+...+...+...... ........+.+...++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R-~ge~~i~s~~g~~~~a--~~~~~~~~~~~~~~~~ 101 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NR-YSEEDVVSHNGLKVKA--VPVSASKDIFKHITEE 101 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------CCE--EECSSGGGGGGGCCSS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Cc-chHHHHHhhcCCeeEE--eecCCHHHHHHHHhcC
Confidence 34688899999999999999999887655444444432111 11 1222232222111110 0011112233333333
Q ss_pred cEEEEEcCCCC--hHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 165 KILIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 165 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
--+|++|++.- .++++.+.. +. ..|..||+|.++.+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~-l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQV-LA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHH-HH--HTTCEEEEEECSBC
T ss_pred CCEEEEECcccCCHHHHHHHHH-Hh--hCCCEEEEEecccc
Confidence 34999999843 233433322 11 23778999998653
No 374
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.55 E-value=0.021 Score=51.60 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=79.3
Q ss_pred CCCcEEEcccc-ccc-----ccCcccccCCCCCEEecCCCCCCC----CCCcccCCCCCccEEEeecCCCCCc----cCc
Q 048627 573 GNISWLLLRGS-AIE-----ELPSSIERQLRLSWLDLTDCKMFK----SLPSSLCKLKSLGVLDLHGCSNLRR----LPE 638 (689)
Q Consensus 573 ~~L~~L~l~~~-~l~-----~l~~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~ 638 (689)
+.|+.|+|+++ .+. .+...+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|..... +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 57899999985 765 355667777899999999999843 4445556678999999999876533 445
Q ss_pred ccCCCCCCCEEEccCC---CCc-----cccchhhccCCCcEEecCCCC
Q 048627 639 CLGQLSSPILLNLAET---NIE-----RIPKSIIQLFMLRYLLLNCSE 678 (689)
Q Consensus 639 ~l~~l~~L~~L~l~~~---~l~-----~lp~~~~~l~~L~~L~l~~~~ 678 (689)
.+..-.+|++|+|++| .+. .+...+..-++|..|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6666778999999865 333 355566777899999998765
No 375
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.53 E-value=0.016 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+.++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987654
No 376
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.52 E-value=0.02 Score=62.54 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=40.2
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 61 NKNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3456899999999888888533 478999999999999999999876544
No 377
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.52 E-value=0.14 Score=53.32 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 72 VEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 72 ~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...|.+++. +-....++.|.|.+|+||||||..++.....+-..++|++
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 344444442 2233458899999999999999999988654434566665
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.50 E-value=0.022 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 379
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.48 E-value=0.036 Score=49.35 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++++|.|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 380
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.46 E-value=0.059 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999886544
No 381
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.45 E-value=0.019 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred eeEEEEEecCCCCHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAI 106 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~ 106 (689)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.45 E-value=0.023 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 383
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.41 E-value=0.041 Score=51.07 Aligned_cols=37 Identities=16% Similarity=-0.059 Sum_probs=29.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++.|+|.+|+||||++..++.++..+...+.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3468889999999999999999998766544455443
No 384
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.40 E-value=0.019 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.40 E-value=0.02 Score=54.85 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+.+|.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998764
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.38 E-value=0.024 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.38 E-value=0.029 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.37 E-value=0.023 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.249 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.37 E-value=0.026 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=22.1
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHH
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
..+.+|+|+|++|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.34 E-value=0.023 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 391
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.32 E-value=0.071 Score=55.13 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=35.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhc-cccceEEeeeccchhcCCCChHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISG-DFEGTCFLENVRVESQRPGGLAWLRQKLLL 142 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 142 (689)
..++|.|.+|+|||+|+..+++.+.. +-+.++|+- ++ ........+.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iG---ER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VG---ERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ES---CCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cc---cCcHHHHHHHHhhhc
Confidence 45889999999999999999998643 445555553 32 232445666666654
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.32 E-value=0.023 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+|+|.|+.|+||||+++.++..+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998764
No 393
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.32 E-value=0.041 Score=55.49 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=36.5
Q ss_pred hHHHHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 71 TVEEIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 71 ~~~~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
-...|...|. .+-....++.|+|.+|+||||||..++......-..++|++
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455666663 22223458889999999999999999988654445677777
No 394
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.31 E-value=0.039 Score=54.52 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++|+|+|-||+||||+|..++..+...-..+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999998776544455554
No 395
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.31 E-value=0.027 Score=55.59 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.0
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....+|+|.|+.|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999887653
No 396
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.31 E-value=0.91 Score=45.81 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=35.4
Q ss_pred CCCcccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 62 KNQLVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 62 ~~~~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...++|....+.++...+..-......|.|+|.+|.||+++|+.+...-.
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 35688988887777666542122223467999999999999998876543
No 397
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.29 E-value=0.045 Score=52.57 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=27.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++.+.|.||+||||++..++..+. .-..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 357888999999999999999998876 433344443
No 398
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.29 E-value=0.046 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999998876544555554
No 399
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.28 E-value=0.045 Score=54.50 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhcc------ccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISGD------FEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~ 121 (689)
..|..+|..+-....++.|+|++|+||||||..++...... -..++|++
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34445553222234689999999999999999999875322 24567776
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.23 E-value=0.029 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...|.|.|++|+||||+|+.++..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998864
No 401
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.23 E-value=0.029 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.23 E-value=0.029 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.21 E-value=0.02 Score=56.50 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.++|+|.|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998653
No 404
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.21 E-value=0.026 Score=52.53 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+++|.|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988764
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.17 E-value=0.028 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.++|+|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999998865
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.17 E-value=0.031 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.16 E-value=0.018 Score=56.27 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=20.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.14 E-value=0.03 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|+|+|+.|+||||||..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998753
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.14 E-value=0.037 Score=52.74 Aligned_cols=36 Identities=28% Similarity=0.138 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh-ccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS-GDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 121 (689)
..+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45899999999999999999985422 2234455554
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.13 E-value=0.03 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.12 E-value=0.032 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 412
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.07 E-value=0.032 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..++|+|.|+.|+||||||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 413
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.07 E-value=0.045 Score=52.43 Aligned_cols=110 Identities=11% Similarity=-0.009 Sum_probs=58.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHH-hcCCCCCCcchHHHHHhhcC
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLN-LLKDENVIPDIDLNFRRLSR 163 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~l~~~l~~ 163 (689)
...+++|+|+.|+|||||++.+...+...+.+.+++.... .......... +..+ ..+. ........+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~v~q~~~gl-~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----IVNQREVGE-DTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----EEEEEEBTT-TBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----eeeHHHhCC-CHHHHHHHHHHHHhh
Confidence 3468999999999999999999887654334444443210 0000000000 0000 0000 011223344555555
Q ss_pred CcEEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccchh
Q 048627 164 IKILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQ 203 (689)
Q Consensus 164 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~~ 203 (689)
.+=++++|+..+.+....++.. ...|..|++||.+..
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcch
Confidence 5668888999766554443332 134667888887654
No 414
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.07 E-value=0.19 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
...+++|+|++|+||||++..++..+...-..+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467899999999999999999998877653333333
No 415
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.03 E-value=0.025 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|+|+.|+|||||++.+...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998765
No 416
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.01 E-value=0.029 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
..+++|.|+.|+|||||++.+..-+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987653
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.98 E-value=0.047 Score=53.59 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=27.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcccc-ceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFE-GTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~ 121 (689)
..+++|.|++|+|||||++.++..+..... .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999988654322 455554
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.96 E-value=0.055 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
..++.|+|++|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999976543
No 419
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.94 E-value=0.04 Score=48.19 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+++|.|+.|+|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 420
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.88 E-value=0.068 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
....+|+|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999988765
No 421
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.87 E-value=0.08 Score=64.43 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=35.8
Q ss_pred HHHHhhc-CCCCCeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 74 EIESLLG-VESKDVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 74 ~l~~~l~-~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+..+|. .+-...+.|.|+|++|+|||+||.+++.....+-..+.|++
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3555553 22234578999999999999999999988766656677776
No 422
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.87 E-value=0.028 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568899999999999999998763
No 423
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.87 E-value=0.058 Score=52.76 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++|+|.|-||+||||+|..++..+...-..+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 67888999999999999999998765533445444
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.80 E-value=0.056 Score=52.86 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=27.8
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999998876543333333
No 425
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.77 E-value=0.056 Score=56.84 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=34.2
Q ss_pred cccchhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 65 LVGVESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 65 ~vGr~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.+.|.+..+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344544455555555322234578999999999999999999999864
No 426
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.76 E-value=0.089 Score=47.94 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=26.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
.|+|-|.-|+||||.++.+++.+..+...+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999987664444443
No 427
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.75 E-value=0.15 Score=55.04 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhccccceEE
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFEGTCF 119 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 119 (689)
+++.|.|.+|.||||++..+...+...-..+.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 578899999999999999999876554333333
No 428
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.71 E-value=0.034 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhh
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999998764
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.68 E-value=0.099 Score=43.89 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=35.1
Q ss_pred EEeccCCCCCC--CCCCCCcCCCcEEEcccccccccCcc-cccCCCCCEEecCCCCC
Q 048627 555 KLDLSGCSKLK--RLPEISSGNISWLLLRGSAIEELPSS-IERQLRLSWLDLTDCKM 608 (689)
Q Consensus 555 ~L~l~~~~~l~--~~p~~~~~~L~~L~l~~~~l~~l~~~-i~~l~~L~~L~l~~~~~ 608 (689)
.++.++.+ ++ .+|.....+|+.|+|++|.|+.+|.. +..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 55566544 44 67766656777777777777777654 45677777777777654
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.66 E-value=0.04 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.65 E-value=0.025 Score=50.21 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
++++|+|..|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999876543
No 432
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.63 E-value=0.076 Score=53.36 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 74 EIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 74 ~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+...|..+-....++.|+|++|+|||||+..++..+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444453222345799999999999999999999876
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.62 E-value=0.036 Score=52.83 Aligned_cols=36 Identities=28% Similarity=0.164 Sum_probs=27.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH-hhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK-ISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~-~~~~f~~~~~~~ 121 (689)
..++.|.|.+|+|||+||.+++.. ..+.-..++|++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 458889999999999999998765 333334556655
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.53 E-value=0.056 Score=54.67 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.....++|+|++|+|||||++.++....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999997653
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.42 E-value=0.058 Score=50.59 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....|+|.|+.|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998765
No 436
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.40 E-value=0.067 Score=55.64 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...+++|+|+.|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999877643 3444543
No 437
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.38 E-value=0.061 Score=55.70 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=44.1
Q ss_pred eEEEEEecCCCCHHHHHH-HHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCCcch----
Q 048627 87 WALGIWGIGGIGKTTIAR-AIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVIPDI---- 154 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~---- 154 (689)
..++|.|.+|+|||+||. .+++.. + -+..+.+..+++ ....+..+.+.+...-... ..+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~-~-~dv~~V~~~iGe---R~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK-G-QDVICIYVAIGQ---KQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG-S-CSEEEEEEEESC---CHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh-c-CCcEEEEEECCC---cchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999976 555544 2 243323333332 2133455555554421110 0111111
Q ss_pred -----HHHHHhh--cCCcEEEEEcCCCC
Q 048627 155 -----DLNFRRL--SRIKILIVFDDVTC 175 (689)
Q Consensus 155 -----~~l~~~l--~~~~~LlVlDdv~~ 175 (689)
-.+-+++ +++.+|+++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1112222 48999999999854
No 438
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.37 E-value=0.46 Score=44.65 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=27.2
Q ss_pred chhhHHHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 68 VESTVEEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 68 r~~~~~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
|+...+.+..++.. + -+.|+|+.|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44455556655531 1 27789999999999999888765
No 439
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.37 E-value=0.14 Score=47.16 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.8
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...|+|.|+.|+||||+++.+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999988654
No 440
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.28 E-value=0.055 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 441
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.26 E-value=0.068 Score=55.39 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCHHHHHH-HHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcC-------CCCCCcc-----
Q 048627 87 WALGIWGIGGIGKTTIAR-AIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLK-------DENVIPD----- 153 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~----- 153 (689)
..++|.|.+|+|||+||. .+++... -+..+.+..+++ ....+..+.+.+...-.. ...+...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGe---R~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQ---KKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESC---CHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC---CcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999976 5555442 343333333332 213345555555432100 1111111
Q ss_pred ----hHHHHHhh--cCCcEEEEEcCCCC
Q 048627 154 ----IDLNFRRL--SRIKILIVFDDVTC 175 (689)
Q Consensus 154 ----~~~l~~~l--~~~~~LlVlDdv~~ 175 (689)
.-.+-+++ +++.+|+++||+..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11112222 48999999999854
No 442
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.25 E-value=0.029 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=16.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHH-HHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIF-DKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~-~~~ 110 (689)
..+++|+|+.|+|||||++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 443
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.14 E-value=0.082 Score=56.22 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=25.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
...+|.++|++|.||||+|+.++..+.-.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 457899999999999999999998865444
No 444
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.064 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
+..|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998874
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.07 E-value=0.062 Score=50.68 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
...+|+|.|+.|+||||+++.++..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988653
No 446
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.05 E-value=0.083 Score=54.56 Aligned_cols=81 Identities=17% Similarity=0.092 Sum_probs=43.6
Q ss_pred eEEEEEecCCCCHHHHHH-HHHHHhhccccc-eEEeeeccchhcCCCChHHHHHHHHHHhcCC-------CCCC------
Q 048627 87 WALGIWGIGGIGKTTIAR-AIFDKISGDFEG-TCFLENVRVESQRPGGLAWLRQKLLLNLLKD-------ENVI------ 151 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~------ 151 (689)
..++|.|.+|+|||+||. .+.++ +. -+. ++|+- +++ ....+..+.+.+...-... ..+.
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~-~~-~dv~~V~~~-IGe---R~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ-RD-SGIKCIYVA-IGQ---KASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT-SS-SSCEEEEEE-ESC---CHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh-cc-CCceEEEEE-ecC---ChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 357899999999999975 45553 32 233 34443 332 2133445555543321100 0111
Q ss_pred -------cchHHHHHhhcCCcEEEEEcCCCC
Q 048627 152 -------PDIDLNFRRLSRIKILIVFDDVTC 175 (689)
Q Consensus 152 -------~~~~~l~~~l~~~~~LlVlDdv~~ 175 (689)
..++.+++ +++.+|+++||+..
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 11222332 48999999999954
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.04 E-value=0.051 Score=61.32 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=40.3
Q ss_pred CCCCcccchhhHHHHHHhhcCC-----------CCCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 61 NKNQLVGVESTVEEIESLLGVE-----------SKDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 61 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
....++|.+...+.+.+.+... -...+.+.++|++|+|||+||+.++......
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456789998888888876421 1234568899999999999999999987544
No 448
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.04 E-value=0.099 Score=53.35 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHhhc------cccceEEee
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKISG------DFEGTCFLE 121 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 121 (689)
..|..+|..+-....++.|+|++|+|||||+..++-.... .-..++|+.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 4455555322223468999999999999999988754221 224467776
No 449
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.04 E-value=0.1 Score=52.20 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhh--ccccceEEee
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKIS--GDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 121 (689)
...+++.+.|.||+||||+|..++..+. ..-..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4468899999999999999999999887 5545555555
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.03 E-value=0.042 Score=56.84 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988765
No 451
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.00 E-value=0.13 Score=51.62 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
....+|+|+|.+|+||||++..++..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998776543
No 452
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.94 E-value=0.084 Score=48.42 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=27.4
Q ss_pred eEEEEE-ecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 87 WALGIW-GIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 87 ~~v~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567776 68999999999999998776544555555
No 453
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.93 E-value=0.048 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.102 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998865
No 454
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.91 E-value=0.1 Score=47.88 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcccc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGDFE 115 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 115 (689)
+.|+|-|.-|+||||+++.++..+...+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999999865443
No 455
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.89 E-value=0.12 Score=48.89 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred CeeEEEEEe-cCCCCHHHHHHHHHHHhhcc-ccceEEee
Q 048627 85 DVWALGIWG-IGGIGKTTIARAIFDKISGD-FEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 121 (689)
..++|+|+| -||+||||+|..++..+... -..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 356777765 79999999999999998776 44555554
No 456
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.89 E-value=0.11 Score=51.70 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=27.8
Q ss_pred HHHHHhhcCCCCCeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 73 EEIESLLGVESKDVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 73 ~~l~~~l~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..|..+|..+-....++.|+|.+|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555553222335689999999999999999999763
No 457
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.84 E-value=0.073 Score=54.47 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 88 ALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
.++|.|.+|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4679999999999999999987543
No 458
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.77 E-value=0.06 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+++|.|+.|+|||||++.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999987653
No 459
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.77 E-value=0.081 Score=47.96 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
...|+|.|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 460
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.74 E-value=0.053 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+++|.|+.|+|||||++.++.-+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999887543
No 461
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.69 E-value=0.052 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.120 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++.-+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999887543
No 462
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.64 E-value=0.16 Score=54.36 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...+|.+.|++|+||||+|+.+...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3578999999999999999999987653
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.57 E-value=0.082 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
+.|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999885
No 464
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.51 E-value=0.084 Score=48.31 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=23.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~ 111 (689)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999875
No 465
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.13 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998764
No 466
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.47 E-value=0.077 Score=49.29 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.42 E-value=0.084 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 468
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.38 E-value=0.14 Score=47.22 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=53.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEeeeccchhcCCCChHHHHHHHHHHhcCCCCCCcchHHHHHhhcCCc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLENVRVESQRPGGLAWLRQKLLLNLLKDENVIPDIDLNFRRLSRIK 165 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 165 (689)
..+..++|.-|.||||-+...+.+...+-..++++.... ... .+ ..+...+........ ......+.+.. +.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~R-yg-~~i~sr~G~~~~a~~--i~~~~di~~~~-~~~ 91 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTR-YS-SSFCTHDRNTMEALP--ACLLRDVAQEA-LGV 91 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCC-C------------CEEEE--ESSGGGGHHHH-TTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Ccc-ch-HHHHhhcCCeeEEEe--cCCHHHHHHHh-ccC
Confidence 467889999999999999888887665544444443221 122 33 333333311111000 01111122222 222
Q ss_pred EEEEEcCCCChHHHHHHhcCCCCCCCCceEEeeccch
Q 048627 166 ILIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNK 202 (689)
Q Consensus 166 ~LlVlDdv~~~~~~~~l~~~l~~~~~g~~iliTtR~~ 202 (689)
-+|++|++.-.....++...+. ..|..||+|.++.
T Consensus 92 dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred CEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 3899999832222333333322 2577899999884
No 469
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.38 E-value=0.12 Score=52.56 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCeeEEEEEe-cCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 84 KDVWALGIWG-IGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 84 ~~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
...++|+|+| -||+||||+|..++..+...-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578888875 9999999999999988766544556655
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.36 E-value=0.081 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~ 108 (689)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999875
No 471
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.34 E-value=0.061 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|+|+.|+|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 472
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.34 E-value=0.085 Score=50.20 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=26.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 89 LGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 89 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
|+|.|-||+||||+|..++..+...-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999999876654555554
No 473
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.34 E-value=0.14 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCHHHHHH-HHHHHhh
Q 048627 87 WALGIWGIGGIGKTTIAR-AIFDKIS 111 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~-~~~~~~~ 111 (689)
..++|.|.+|+|||+||. .+++...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 357899999999999965 5666554
No 474
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.32 E-value=0.071 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
...|+|.|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.29 E-value=0.075 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
...+++|+|+.|+|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998776
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.29 E-value=0.15 Score=50.71 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=30.4
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
..+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889999999999999999999877655566655
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.19 E-value=0.22 Score=45.88 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
..|+|.|+.|+||||+++.++..+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 478
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.19 E-value=0.064 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+++|.|+.|+|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988754
No 479
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.15 E-value=0.15 Score=47.45 Aligned_cols=28 Identities=29% Similarity=0.295 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...|+|.|+.|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 480
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.14 E-value=0.062 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEEecCCCCHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFD 108 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~ 108 (689)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 481
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.13 E-value=0.079 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.386 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHH
Q 048627 87 WALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 482
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.10 E-value=0.19 Score=50.12 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....+++|.|++|+|||||...+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44678999999999999999999876543
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.10 E-value=0.23 Score=47.80 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCCeeEEEEEe-cCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 83 SKDVWALGIWG-IGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 83 ~~~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
....++|.|+| .||+||||+|..++..+...-..+..++
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34568899987 5899999999999998876555566665
No 484
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.09 E-value=0.067 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++.-+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999887543
No 485
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.08 E-value=0.12 Score=55.21 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
...+|+|.|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3468999999999999999999998764
No 486
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.05 E-value=0.064 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCHHHHHH-HHHHHh
Q 048627 87 WALGIWGIGGIGKTTIAR-AIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~-~~~~~~ 110 (689)
..++|.|.+|+|||+||. .+++..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh
Confidence 457899999999999976 555544
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.05 E-value=0.088 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 488
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.03 E-value=0.15 Score=46.93 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=25.9
Q ss_pred EEEE-EecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 88 ALGI-WGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 88 ~v~I-~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
+|+| .+-||+||||+|..++..+...- .+..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4555 57899999999999999987765 555555
No 489
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.03 E-value=0.15 Score=47.71 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.6
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhcc
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGD 113 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 113 (689)
...|+|.|+.|+||||+++.++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987543
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.02 E-value=0.082 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
..+++|.|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 491
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.00 E-value=0.18 Score=50.05 Aligned_cols=36 Identities=31% Similarity=0.233 Sum_probs=28.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEee
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFLE 121 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 121 (689)
.+++...|.||+||||+|..++..+...-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467777899999999999999998876644555555
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.00 E-value=0.11 Score=45.54 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHH
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999999875
No 493
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.96 E-value=0.072 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+++|.|+.|+|||||++.++.-+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887543
No 494
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.94 E-value=0.13 Score=47.77 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=25.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISG 112 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 112 (689)
....|+|.|+.|+||||+++.+...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 495
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.94 E-value=0.061 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHh
Q 048627 87 WALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 87 ~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
.+++|.|+.|+|||||++.++.-+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987643
No 496
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.94 E-value=0.071 Score=51.17 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=24.9
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHhhccccceEEe
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKISGDFEGTCFL 120 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 120 (689)
..+++|.|+.|+|||||++.++.-+.. ..+.+++
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~ 70 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHL 70 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEE
Confidence 358999999999999999988765432 2344444
No 497
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.90 E-value=0.15 Score=45.69 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCeeEEEEEecCCCCHHHHHHHHHHH
Q 048627 84 KDVWALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 84 ~~~~~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988754
No 498
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.90 E-value=0.14 Score=53.83 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=25.0
Q ss_pred CeeEEEEEecCCCCHHHHHHHHHHHhhccc
Q 048627 85 DVWALGIWGIGGIGKTTIARAIFDKISGDF 114 (689)
Q Consensus 85 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 114 (689)
...+|.++|++|+||||+|+.++......|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 346889999999999999999998865444
No 499
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.88 E-value=0.3 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHH
Q 048627 88 ALGIWGIGGIGKTTIARAIFDK 109 (689)
Q Consensus 88 ~v~I~G~gGiGKTtLa~~~~~~ 109 (689)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999998754
No 500
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.87 E-value=0.075 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCCHHHHHHHHHHHh
Q 048627 86 VWALGIWGIGGIGKTTIARAIFDKI 110 (689)
Q Consensus 86 ~~~v~I~G~gGiGKTtLa~~~~~~~ 110 (689)
..+++|.|+.|+|||||++.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
Done!