BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048628
         (105 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
           Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
          Length = 507

 Score = 29.3 bits (64), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 6   YHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTR----HKDIDVRGQHFELLSRGGG 61
           YHI   T  F+N   +  DP          P  FL +    +KD+  R   F +    G 
Sbjct: 372 YHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSV----GK 427

Query: 62  GMCSG-----------VSFCPPSFDFATPSNKPLDMGEGLGLTVE 95
             C G           +S      DF    N+P  M    GLT++
Sbjct: 428 RRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIK 472


>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
           With Alpha-Naphthoflavone
          Length = 495

 Score = 29.3 bits (64), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 15  FINACQLQRDPRIREEQCKVQPETFLT 41
           F+N  Q+  DP + E+  + +PE FLT
Sbjct: 384 FVNQWQVNHDPELWEDPSEFRPERFLT 410


>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 723

 Score = 28.9 bits (63), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 70  CPPSFDFATPSNKPLDMGEG--LGLTVEKFAPLEVLQ 104
           CP +F  ATP+   + MG+G  LG+ ++    LEV +
Sbjct: 366 CPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 402


>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 645

 Score = 28.9 bits (63), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 70  CPPSFDFATPSNKPLDMGEG--LGLTVEKFAPLEVLQ 104
           CP +F  ATP+   + MG+G  LG+ ++    LEV +
Sbjct: 288 CPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 324


>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
 pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
 pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
          Length = 417

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 6/38 (15%)

Query: 24  DPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG 61
           DPR+ +   + +PE F  R +++      F+++ +GGG
Sbjct: 324 DPRLWDHPDEFRPERFAEREENL------FDMIPQGGG 355


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,249,046
Number of Sequences: 62578
Number of extensions: 125172
Number of successful extensions: 218
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)