Query 048628
Match_columns 105
No_of_seqs 129 out of 1214
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 8.8E-28 1.9E-32 175.3 6.8 99 1-104 374-484 (489)
2 PLN03234 cytochrome P450 83B1; 99.9 8.7E-26 1.9E-30 164.7 7.0 104 1-104 376-495 (499)
3 PLN02971 tryptophan N-hydroxyl 99.9 6.6E-26 1.4E-30 167.2 5.8 102 1-103 415-529 (543)
4 PLN02394 trans-cinnamate 4-mon 99.9 2E-25 4.3E-30 163.0 7.0 104 1-104 381-500 (503)
5 PLN02183 ferulate 5-hydroxylas 99.9 2.4E-25 5.2E-30 163.2 7.0 102 1-103 391-507 (516)
6 PLN02966 cytochrome P450 83A1 99.9 8.2E-25 1.8E-29 159.9 6.3 101 1-103 379-495 (502)
7 PLN00110 flavonoid 3',5'-hydro 99.9 1.3E-24 2.7E-29 159.2 6.9 102 1-102 377-491 (504)
8 KOG0158 Cytochrome P450 CYP3/C 99.9 1.5E-24 3.3E-29 158.0 6.4 98 2-102 382-493 (499)
9 PF00067 p450: Cytochrome P450 99.9 4.5E-25 9.8E-30 156.1 3.0 82 1-84 350-443 (463)
10 PTZ00404 cytochrome P450; Prov 99.9 2.8E-24 6.1E-29 156.2 6.5 88 1-95 371-471 (482)
11 PLN02738 carotene beta-ring hy 99.9 4.2E-24 9.1E-29 160.2 7.3 80 2-81 478-569 (633)
12 PLN00168 Cytochrome P450; Prov 99.9 3.6E-24 7.9E-29 157.1 6.4 87 1-87 395-496 (519)
13 PLN02169 fatty acid (omega-1)- 99.9 3.2E-24 6.9E-29 157.1 5.9 97 3-102 385-494 (500)
14 PLN02500 cytochrome P450 90B1 99.9 4.6E-24 1E-28 155.5 6.1 81 1-81 371-467 (490)
15 KOG0157 Cytochrome P450 CYP4/C 99.9 4.6E-24 1E-28 156.3 5.3 98 2-103 380-491 (497)
16 PLN03195 fatty acid omega-hydr 99.9 5.3E-24 1.2E-28 156.0 5.3 96 3-102 402-510 (516)
17 PLN02687 flavonoid 3'-monooxyg 99.9 1.6E-23 3.4E-28 153.7 7.3 103 1-103 385-504 (517)
18 PLN02655 ent-kaurene oxidase 99.9 2.3E-23 5E-28 151.2 6.3 98 1-102 349-458 (466)
19 PLN03112 cytochrome P450 famil 99.9 3.7E-23 7.9E-28 151.5 7.2 100 2-101 385-501 (514)
20 PLN02774 brassinosteroid-6-oxi 99.9 2.3E-23 4.9E-28 151.1 5.6 77 1-82 354-442 (463)
21 PLN02426 cytochrome P450, fami 99.9 2.7E-23 5.9E-28 152.3 6.1 97 4-102 385-494 (502)
22 PLN02936 epsilon-ring hydroxyl 99.9 4.2E-23 9.1E-28 150.7 6.6 84 2-85 366-461 (489)
23 PLN03141 3-epi-6-deoxocathaste 99.9 2.2E-23 4.9E-28 150.7 5.0 75 1-81 342-428 (452)
24 PLN02290 cytokinin trans-hydro 99.9 3.3E-23 7.2E-28 151.8 5.8 76 1-81 402-490 (516)
25 PLN03018 homomethionine N-hydr 99.9 7.2E-23 1.6E-27 151.1 7.0 81 1-81 402-497 (534)
26 KOG0159 Cytochrome P450 CYP11/ 99.9 7.8E-23 1.7E-27 148.1 4.4 95 1-100 404-510 (519)
27 PLN02987 Cytochrome P450, fami 99.9 3E-22 6.6E-27 145.9 6.4 80 1-83 357-448 (472)
28 PLN02302 ent-kaurenoic acid ox 99.9 2.5E-22 5.4E-27 145.9 5.5 75 1-81 378-464 (490)
29 PLN02196 abscisic acid 8'-hydr 99.9 2.4E-22 5.2E-27 145.8 4.6 74 1-81 354-439 (463)
30 KOG0684 Cytochrome P450 [Secon 99.8 1.4E-20 3.1E-25 134.5 4.7 97 5-102 369-479 (486)
31 COG2124 CypX Cytochrome P450 [ 99.8 4.3E-19 9.3E-24 127.6 3.4 69 1-81 307-387 (411)
32 PLN02648 allene oxide synthase 99.7 2.3E-18 4.9E-23 126.0 3.3 77 5-81 369-462 (480)
33 PF08492 SRP72: SRP72 RNA-bind 67.1 5.2 0.00011 21.4 1.8 9 34-42 43-51 (59)
34 PF12508 DUF3714: Protein of u 61.0 8 0.00017 25.8 2.2 16 1-16 79-94 (200)
35 PRK14759 potassium-transportin 51.5 6.3 0.00014 17.9 0.4 6 34-39 24-29 (29)
36 PF01629 DUF22: Domain of unkn 46.3 23 0.0005 21.4 2.3 39 2-40 58-96 (112)
37 PF09604 Potass_KdpF: F subuni 46.1 8.7 0.00019 16.8 0.4 6 34-39 20-25 (25)
38 PF11138 DUF2911: Protein of u 33.6 39 0.00084 21.4 2.0 18 1-18 56-73 (145)
39 TIGR02115 potass_kdpF K+-trans 33.1 10 0.00023 16.8 -0.4 7 34-40 19-25 (26)
40 TIGR03779 Bac_Flav_CT_M Bacter 31.8 40 0.00086 25.1 2.1 17 1-17 282-298 (410)
41 PF11227 DUF3025: Protein of u 27.3 42 0.00092 22.7 1.5 17 22-38 195-211 (212)
42 COG2101 SPT15 TATA-box binding 27.1 25 0.00054 23.1 0.3 35 32-68 35-70 (185)
43 KOG3438 DNA-directed RNA polym 26.5 24 0.00053 21.0 0.2 11 1-11 43-53 (105)
44 COG1417 Uncharacterized conser 25.9 1.1E+02 0.0025 21.5 3.3 65 2-72 87-151 (288)
45 KOG3506 40S ribosomal protein 25.1 31 0.00068 18.1 0.4 9 57-65 13-22 (56)
46 cd04518 TBP_archaea archaeal T 25.0 26 0.00057 22.8 0.2 34 32-67 29-63 (174)
47 KOG3262 H/ACA small nucleolar 24.8 45 0.00098 22.2 1.2 34 7-42 107-141 (215)
48 PF14550 Peptidase_U35_2: Puta 23.4 59 0.0013 20.0 1.5 25 2-29 78-102 (122)
49 PF14510 ABC_trans_N: ABC-tran 20.7 29 0.00063 19.4 -0.2 19 23-41 23-41 (85)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=8.8e-28 Score=175.32 Aligned_cols=99 Identities=32% Similarity=0.638 Sum_probs=86.0
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++|+||.|||||.|.++.|++||||++|+||++|+||||++.+ +.+.....++|||.| |.|+|+.+|++
T Consensus 374 ~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~---d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la 450 (489)
T KOG0156|consen 374 TKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN---DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLA 450 (489)
T ss_pred eeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc---cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999862 233356799999999 99999999999
Q ss_pred ----ceeEEcCCCCCCCCCCccceeeecccceEEec
Q 048628 73 ----SFDFATPSNKPLDMGEGLGLTVEKFAPLEVLQ 104 (105)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 104 (105)
+|+|+.+.+ .+++.+. +++..++.++.+.+
T Consensus 451 ~llq~F~w~~~~~-~~d~~e~-~~~~~~~~pl~~~~ 484 (489)
T KOG0156|consen 451 NLLQRFDWKLPGG-KVDMEEA-GLTLKKKKPLKAVP 484 (489)
T ss_pred HHHheeeeecCCC-CCCCccc-ccceecCCcceeee
Confidence 999999987 7788777 46667777777665
No 2
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.92 E-value=8.7e-26 Score=164.68 Aligned_cols=104 Identities=31% Similarity=0.509 Sum_probs=83.6
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
++++||.|||||.|.++.|.+|||+++| +||++|+||||+++++..........++|||.| |+|+|++||++
T Consensus 376 ~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~l 455 (499)
T PLN03234 376 AKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPF 455 (499)
T ss_pred eeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHH
Confidence 3679999999999999999999999999 899999999999753221223345689999999 99999999988
Q ss_pred -----ceeEEcCCC---CCCCCCCccceeeecccceEEec
Q 048628 73 -----SFDFATPSN---KPLDMGEGLGLTVEKFAPLEVLQ 104 (105)
Q Consensus 73 -----~f~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~p 104 (105)
+|+|+++++ ..+.+....++...++..+.+.|
T Consensus 456 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
T PLN03234 456 ANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAP 495 (499)
T ss_pred HHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEe
Confidence 999999876 23444445666666777777765
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.92 E-value=6.6e-26 Score=167.19 Aligned_cols=102 Identities=17% Similarity=0.361 Sum_probs=80.5
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|+++.|++|||+++|+||++|+||||++.............++|||.| |+|+|++||++
T Consensus 415 ~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la 494 (543)
T PLN02971 415 TTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLA 494 (543)
T ss_pred eeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999642111112234579999999 99999999999
Q ss_pred ----ceeEEcCCC-CCCCCCCccceeeecccceEEe
Q 048628 73 ----SFDFATPSN-KPLDMGEGLGLTVEKFAPLEVL 103 (105)
Q Consensus 73 ----~f~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 103 (105)
+|+|++.++ ...++.+.++ ++..+.++.++
T Consensus 495 ~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 529 (543)
T PLN02971 495 RLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMV 529 (543)
T ss_pred HHHHhCEEEeCCCCCCcchhhhcC-cccccccceee
Confidence 999998865 4577776665 44344455544
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.92 E-value=2e-25 Score=162.96 Aligned_cols=104 Identities=24% Similarity=0.515 Sum_probs=79.4
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||+|||||.|.++.|++|||+++|++|++|+||||++..+..........++|||.| |+|+|++||++
T Consensus 381 ~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la 460 (503)
T PLN02394 381 AKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLG 460 (503)
T ss_pred cccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999998642111122235689999999 99999999999
Q ss_pred ----ceeEEcCCCC-CCCCCCccc-eee--ecccceEEec
Q 048628 73 ----SFDFATPSNK-PLDMGEGLG-LTV--EKFAPLEVLQ 104 (105)
Q Consensus 73 ----~f~~~~~~~~-~~~~~~~~~-~~~--~~~~~l~~~p 104 (105)
+|+|++.++. .++..+.++ +.. +....+++.|
T Consensus 461 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (503)
T PLN02394 461 RLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKP 500 (503)
T ss_pred HHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeec
Confidence 8999987774 466655453 343 2333444443
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.92 E-value=2.4e-25 Score=163.22 Aligned_cols=102 Identities=28% Similarity=0.492 Sum_probs=78.8
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.|||||.|.++.|++|||+++|+||++|+||||+++. ..........++|||.| |+|+|++||++
T Consensus 391 ~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~-~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la 469 (516)
T PLN02183 391 AEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPG-VPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVA 469 (516)
T ss_pred eeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCC-CccccCCcceecCCCCCCCCCCChHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999642 11122244689999999 99999999999
Q ss_pred ----ceeEEcCCCCC---CCCCCccceeeecccceEEe
Q 048628 73 ----SFDFATPSNKP---LDMGEGLGLTVEKFAPLEVL 103 (105)
Q Consensus 73 ----~f~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 103 (105)
+|+|++.++.. .+....++.+..+.+++++.
T Consensus 470 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (516)
T PLN02183 470 HLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAV 507 (516)
T ss_pred HHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEE
Confidence 89999877632 33333345444445555554
No 6
>PLN02966 cytochrome P450 83A1
Probab=99.91 E-value=8.2e-25 Score=159.91 Aligned_cols=101 Identities=28% Similarity=0.541 Sum_probs=78.2
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
++++||.|||||.|.++.|++|||+++| ++|++|+||||++.. .........++|||.| |+|+|++||++
T Consensus 379 ~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~--~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~l 456 (502)
T PLN02966 379 TKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKE--VDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPY 456 (502)
T ss_pred eeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCC--CCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999999999999 999999999999642 1122234589999999 99999999988
Q ss_pred -----ceeEEcCCCC---CCCCCCccceeeecccceEEe
Q 048628 73 -----SFDFATPSNK---PLDMGEGLGLTVEKFAPLEVL 103 (105)
Q Consensus 73 -----~f~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 103 (105)
+|+|++.++. .+++....++...++..+++.
T Consensus 457 a~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (502)
T PLN02966 457 ANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLV 495 (502)
T ss_pred HHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEE
Confidence 8999988763 233334445554344455543
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.91 E-value=1.3e-24 Score=159.24 Aligned_cols=102 Identities=34% Similarity=0.623 Sum_probs=78.3
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCC-CCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKD-IDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~-~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
++++||.||||+.|.++.|++|+|+++|+||++|+||||++.... .........++|||.| |.|+|++||++
T Consensus 377 ~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~l 456 (504)
T PLN00110 377 CEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYIL 456 (504)
T ss_pred eeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999964211 1111123579999999 99999999998
Q ss_pred -----ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 -----SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 -----~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+|+|++.++...++....++++.++.++.+
T Consensus 457 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (504)
T PLN00110 457 GTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSA 491 (504)
T ss_pred HHHHHhceeecCCCCccCcccccccccccCCCceE
Confidence 899998876544443345555555444443
No 8
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.5e-24 Score=157.99 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=76.8
Q ss_pred eec-cEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 2 PTC-SYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 2 ~i~-g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++. ++.|+||+.|.++.|++||||++|+||++|+||||.+.. .. ...+..|+|||.| |+|+|++||.+
T Consensus 382 ~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~--~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~ 458 (499)
T KOG0158|consen 382 EIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEEN--NK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALA 458 (499)
T ss_pred ecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCc--cc-ccCCccccCCCCCccccHHHHHHHHHHHHHHH
Confidence 566 899999999999999999999999999999999999752 11 3456699999999 99999999999
Q ss_pred ----ceeEEcCCCCCCCCCC-ccceeeecccceEE
Q 048628 73 ----SFDFATPSNKPLDMGE-GLGLTVEKFAPLEV 102 (105)
Q Consensus 73 ----~f~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 102 (105)
+|+++..+........ ..+.++.++.++.+
T Consensus 459 ~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~L 493 (499)
T KOG0158|consen 459 HLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWL 493 (499)
T ss_pred HHHhhCEEecCCcccCcccCCccceeeecCCceEE
Confidence 8999987732222111 11455666665554
No 9
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.90 E-value=4.5e-25 Score=156.09 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=68.0
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.+++|+|+++|+||++|+|+||++... ........++|||.| |.|+|++||.+
T Consensus 350 ~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la 427 (463)
T PF00067_consen 350 VTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG--ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLA 427 (463)
T ss_dssp EEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS--TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998621 123455689999999 99999999999
Q ss_pred ----ceeEEcCCCCCC
Q 048628 73 ----SFDFATPSNKPL 84 (105)
Q Consensus 73 ----~f~~~~~~~~~~ 84 (105)
+|++++.++...
T Consensus 428 ~ll~~f~~~~~~~~~~ 443 (463)
T PF00067_consen 428 KLLRRFDFELVPGSEP 443 (463)
T ss_dssp HHHHHEEEEESTTSSG
T ss_pred HHHHhCEEEECCCCCC
Confidence 999999766333
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=99.90 E-value=2.8e-24 Score=156.21 Aligned_cols=88 Identities=25% Similarity=0.374 Sum_probs=72.5
Q ss_pred Cee-ccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 1 MPT-CSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 1 ~~i-~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
+++ +||.||||+.|.++.+++||||++|+||++|+||||++. . ....++|||.| |.|+|++||++
T Consensus 371 ~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~--~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~l 443 (482)
T PTZ00404 371 IIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNP--D-----SNDAFMPFSIGPRNCVGQQFAQDELYLAF 443 (482)
T ss_pred EEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCC--C-----CCCceeccCCCCCCCccHHHHHHHHHHHH
Confidence 357 899999999999999999999999999999999999863 1 24589999999 99999999999
Q ss_pred -----ceeEEcCCCCCCCCCCccceeee
Q 048628 73 -----SFDFATPSNKPLDMGEGLGLTVE 95 (105)
Q Consensus 73 -----~f~~~~~~~~~~~~~~~~~~~~~ 95 (105)
+|+|+..+++........++++.
T Consensus 444 a~ll~~f~~~~~~~~~~~~~~~~~~~~~ 471 (482)
T PTZ00404 444 SNIILNFKLKSIDGKKIDETEEYGLTLK 471 (482)
T ss_pred HHHHHhcEEecCCCCCCCcccccceeec
Confidence 99999876644333333344444
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=99.90 E-value=4.2e-24 Score=160.16 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=68.3
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC--------
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~-------- 72 (105)
+++||.|||||.|.++.|.+|||+++|+||++|+||||+..............++|||.| |+|+|++||++
T Consensus 478 ~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~ 557 (633)
T PLN02738 478 MLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAM 557 (633)
T ss_pred eECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998532111122345579999999 99999999999
Q ss_pred ---ceeEEcCCC
Q 048628 73 ---SFDFATPSN 81 (105)
Q Consensus 73 ---~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 558 Llr~F~~el~~~ 569 (633)
T PLN02738 558 LVRRFDFQLAPG 569 (633)
T ss_pred HHHhCeeEeCCC
Confidence 899998766
No 12
>PLN00168 Cytochrome P450; Provisional
Probab=99.90 E-value=3.6e-24 Score=157.12 Aligned_cols=87 Identities=21% Similarity=0.404 Sum_probs=70.8
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCC--CC-ccCcceeeeecCCC-CCCcccccCCC----
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKD--ID-VRGQHFELLSRGGG-GMCSGVSFCPP---- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~--~~-~~~~~~~~~~Fg~G-r~C~G~~lA~~---- 72 (105)
++++||.||||+.|.++.|++|||+++|++|++|+||||++.... .+ .....+.++|||.| |+|+|++||.+
T Consensus 395 ~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~ 474 (519)
T PLN00168 395 MEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEY 474 (519)
T ss_pred ccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHH
Confidence 368999999999999999999999999999999999999963111 01 11234579999999 99999999999
Q ss_pred -------ceeEEcCCCCCCCCC
Q 048628 73 -------SFDFATPSNKPLDMG 87 (105)
Q Consensus 73 -------~f~~~~~~~~~~~~~ 87 (105)
+|+|++.++..+++.
T Consensus 475 ~la~ll~~f~~~~~~~~~~~~~ 496 (519)
T PLN00168 475 FVANMVREFEWKEVPGDEVDFA 496 (519)
T ss_pred HHHHHHHHccceeCCCCcCChh
Confidence 899998766444443
No 13
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.90 E-value=3.2e-24 Score=157.07 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=75.6
Q ss_pred eccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC--------
Q 048628 3 TCSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (105)
Q Consensus 3 i~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~-------- 72 (105)
++|+.||||+.|.+++|++|||+++| +||++|+||||++..+. ......+.|+|||+| |+|+|++||++
T Consensus 385 ~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~-~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ 463 (500)
T PLN02169 385 PSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGG-LRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALE 463 (500)
T ss_pred cCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCC-ccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 89999999999964211 111235689999999 99999999999
Q ss_pred ---ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 ---SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+|+|++.++..+.. ...+++.++.++.+
T Consensus 464 ll~~f~~~~~~~~~~~~--~~~~~l~~~~gl~l 494 (500)
T PLN02169 464 IIKNYDFKVIEGHKIEA--IPSILLRMKHGLKV 494 (500)
T ss_pred HHHHCEEEEcCCCCccc--ccceEEecCCCEEE
Confidence 99999876543322 23455556665544
No 14
>PLN02500 cytochrome P450 90B1
Probab=99.90 E-value=4.6e-24 Score=155.52 Aligned_cols=81 Identities=12% Similarity=0.257 Sum_probs=68.4
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCc----cCcceeeeecCCC-CCCcccccCCC---
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDV----RGQHFELLSRGGG-GMCSGVSFCPP--- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~----~~~~~~~~~Fg~G-r~C~G~~lA~~--- 72 (105)
++++||.||||+.|.++.|++|||+++|+||++|+||||++....... ......++|||.| |.|+|++||++
T Consensus 371 ~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~ 450 (490)
T PLN02500 371 VRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMA 450 (490)
T ss_pred ceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999999999999999999964211110 1134579999999 99999999999
Q ss_pred --------ceeEEcCCC
Q 048628 73 --------SFDFATPSN 81 (105)
Q Consensus 73 --------~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 451 ~~la~ll~~f~~~~~~~ 467 (490)
T PLN02500 451 VFIHHLVLNFNWELAEA 467 (490)
T ss_pred HHHHHHHhccEEEEcCC
Confidence 999998765
No 15
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.89 E-value=4.6e-24 Score=156.28 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=79.3
Q ss_pred ee-ccEEeCCCCEEEEecchhccCCCCCC-CCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 2 PT-CSYHIFASTQFFINACQLQRDPRIRE-EQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 2 ~i-~g~~ip~g~~v~~~~~~~~~~~~~~~-~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
++ +||.||||+.|.++++++||++++|+ ||++|+|+||+++.. ....+++.|+|||+| |.|+|++||++
T Consensus 380 ~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~--~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l 457 (497)
T KOG0157|consen 380 KLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEE--KAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVL 457 (497)
T ss_pred EcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCC--cCCCCCccccCCCCCcccchhHHHHHHHHHHHH
Confidence 56 58999999999999999999999996 999999999996421 124456899999999 99999999999
Q ss_pred -----ceeEEcCCCCCCCCCCccceeeecccceEEe
Q 048628 73 -----SFDFATPSNKPLDMGEGLGLTVEKFAPLEVL 103 (105)
Q Consensus 73 -----~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (105)
+|+|++..+.. ......+++.+..++.+.
T Consensus 458 ~~ll~~f~~~~~~~~~--~~~~~~~~l~~~~gl~v~ 491 (497)
T KOG0157|consen 458 AHLLRRFRIEPVGGDK--PKPVPELTLRPKNGLKVK 491 (497)
T ss_pred HHHHHheEEEecCCCC--ceeeeEEEEEecCCeEEE
Confidence 89999877633 333455666777766554
No 16
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.89 E-value=5.3e-24 Score=156.00 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=73.7
Q ss_pred eccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC--------
Q 048628 3 TCSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (105)
Q Consensus 3 i~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~-------- 72 (105)
++|+.||||+.|.++.|++|||+++| +||++|+||||++. +.........++|||.| |+|+|++||++
T Consensus 402 ~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~--~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ 479 (516)
T PLN03195 402 PDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKD--GVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALAL 479 (516)
T ss_pred CCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCC--CCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 99999999999963 11112234579999999 99999999999
Q ss_pred ---ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 ---SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+|+|++.++..... ....++.++.++.+
T Consensus 480 ll~~f~~~~~~~~~~~~--~~~~~~~~~~~~~v 510 (516)
T PLN03195 480 LCRFFKFQLVPGHPVKY--RMMTILSMANGLKV 510 (516)
T ss_pred HHHhceeEecCCCccee--eeeeEEecCCCEEE
Confidence 89999876543322 22234445555444
No 17
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.89 E-value=1.6e-23 Score=153.69 Aligned_cols=103 Identities=31% Similarity=0.612 Sum_probs=77.6
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCC--CccCcceeeeecCCC-CCCcccccCCC-----
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDI--DVRGQHFELLSRGGG-GMCSGVSFCPP----- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~--~~~~~~~~~~~Fg~G-r~C~G~~lA~~----- 72 (105)
++++|+.||||+.|.++.|++|||+++|+||++|+||||++..... ........++|||.| |.|+|++||++
T Consensus 385 ~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~ 464 (517)
T PLN02687 385 CEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLL 464 (517)
T ss_pred eeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999642110 112234589999999 99999999998
Q ss_pred ------ceeEEcCCCC---CCCCCCccceeeecccceEEe
Q 048628 73 ------SFDFATPSNK---PLDMGEGLGLTVEKFAPLEVL 103 (105)
Q Consensus 73 ------~f~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 103 (105)
+|+|++.++. .++....+.+...+..++.+.
T Consensus 465 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (517)
T PLN02687 465 TATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVH 504 (517)
T ss_pred HHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEe
Confidence 8999988663 233333344444444455443
No 18
>PLN02655 ent-kaurene oxidase
Probab=99.89 E-value=2.3e-23 Score=151.18 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=76.8
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.+++|||+++|++|++|+|+||++.. ........++|||.| |.|+|++||..
T Consensus 349 ~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~---~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~ 425 (466)
T PLN02655 349 TTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEK---YESADMYKTMAFGAGKRVCAGSLQAMLIACMAIA 425 (466)
T ss_pred cccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCC---cccCCcccccCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999642 111123689999999 99999999998
Q ss_pred ----ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 ----SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+|+|++.++... .....+++..++.++.+
T Consensus 426 ~ll~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 458 (466)
T PLN02655 426 RLVQEFEWRLREGDEE-KEDTVQLTTQKLHPLHA 458 (466)
T ss_pred HHHHHeEEEeCCCCcc-ccchhheeEeecCCcEE
Confidence 899998766321 22334555555555544
No 19
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.88 E-value=3.7e-23 Score=151.48 Aligned_cols=100 Identities=28% Similarity=0.492 Sum_probs=75.9
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCC-C-ccCcceeeeecCCC-CCCcccccCCC------
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDI-D-VRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~-~-~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
+++|+.||||+.|.++.|++|||+++|+||++|+|+||+..++.. . .......++|||.| |.|+|++||++
T Consensus 385 ~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~l 464 (514)
T PLN03112 385 TINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMAL 464 (514)
T ss_pred eEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999986532111 1 11234579999999 99999999999
Q ss_pred -----ceeEEcCCCC---CCCCCCccceeeecccceE
Q 048628 73 -----SFDFATPSNK---PLDMGEGLGLTVEKFAPLE 101 (105)
Q Consensus 73 -----~f~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 101 (105)
+|+|++..+. .+.+...++++..++.++.
T Consensus 465 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (514)
T PLN03112 465 ARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLR 501 (514)
T ss_pred HHHHHheeeecCCCCCcccCCCccccCcccccCCCeE
Confidence 8999987652 3444344455554444443
No 20
>PLN02774 brassinosteroid-6-oxidase
Probab=99.88 E-value=2.3e-23 Score=151.11 Aligned_cols=77 Identities=17% Similarity=0.362 Sum_probs=67.3
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|+++.+.+|||+++|+||++|+||||++.. ... ...++|||+| |.|+|++||.+
T Consensus 354 ~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~----~~~-~~~~lpFG~G~r~C~G~~~A~~e~~~~la 428 (463)
T PLN02774 354 MELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKS----LES-HNYFFLFGGGTRLCPGKELGIVEISTFLH 428 (463)
T ss_pred eeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCC----cCC-CccccCcCCCCCcCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999641 111 2358999999 99999999999
Q ss_pred ----ceeEEcCCCC
Q 048628 73 ----SFDFATPSNK 82 (105)
Q Consensus 73 ----~f~~~~~~~~ 82 (105)
+|+|++.++.
T Consensus 429 ~Ll~~f~~~~~~~~ 442 (463)
T PLN02774 429 YFVTRYRWEEVGGD 442 (463)
T ss_pred HHHHhceEEECCCC
Confidence 8999997763
No 21
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.88 E-value=2.7e-23 Score=152.29 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=73.2
Q ss_pred ccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC---------
Q 048628 4 CSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP--------- 72 (105)
Q Consensus 4 ~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~--------- 72 (105)
+|+.|||||.|.++.|++|||+++| +||++|+||||++.+ . ........++|||.| |.|+|++||++
T Consensus 385 ~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~-~-~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~l 462 (502)
T PLN02426 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNG-V-FVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAV 462 (502)
T ss_pred CCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCC-C-cCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 999999999999631 1 112234578999999 99999999998
Q ss_pred --ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 --SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 --~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+|+|++.++.........++++.++.++.+
T Consensus 463 l~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v 494 (502)
T PLN02426 463 VRRFDIEVVGRSNRAPRFAPGLTATVRGGLPV 494 (502)
T ss_pred HHHceEEEecCCCCCCcccceeEEecCCCEEE
Confidence 899998643221111122345555554444
No 22
>PLN02936 epsilon-ring hydroxylase
Probab=99.88 E-value=4.2e-23 Score=150.68 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=69.1
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC--------
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~-------- 72 (105)
.++||.||+|+.|.++.+.+|||+++|++|++|+||||+..............++|||.| |.|+|++||++
T Consensus 366 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ 445 (489)
T PLN02936 366 LPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAV 445 (489)
T ss_pred ccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999632111112224579999999 99999999999
Q ss_pred ---ceeEEcCCCCCCC
Q 048628 73 ---SFDFATPSNKPLD 85 (105)
Q Consensus 73 ---~f~~~~~~~~~~~ 85 (105)
+|++++++++.+.
T Consensus 446 ll~~f~~~~~~~~~~~ 461 (489)
T PLN02936 446 LLQRLDLELVPDQDIV 461 (489)
T ss_pred HHHhCeEEecCCCccc
Confidence 8999988764443
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.88 E-value=2.2e-23 Score=150.68 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=67.3
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.|++|+|+++|+||++|+||||++.. .....++|||.| |+|+|++||++
T Consensus 342 ~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~------~~~~~~~pFG~G~R~C~G~~lA~~el~~~la 415 (452)
T PLN03141 342 VEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKD------MNNSSFTPFGGGQRLCPGLDLARLEASIFLH 415 (452)
T ss_pred eeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCC------CCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999641 124579999999 99999999999
Q ss_pred ----ceeEEcCCC
Q 048628 73 ----SFDFATPSN 81 (105)
Q Consensus 73 ----~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 416 ~ll~~f~~~~~~~ 428 (452)
T PLN03141 416 HLVTRFRWVAEED 428 (452)
T ss_pred HHHhcCeeecCCC
Confidence 899998765
No 24
>PLN02290 cytokinin trans-hydroxylase
Probab=99.88 E-value=3.3e-23 Score=151.76 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=66.6
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCC-CCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIR-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------ 72 (105)
++++||.|||||.|.++.|++||||++| +||++|+||||++. . . .....++|||.| |.|+|++||++
T Consensus 402 ~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~--~--~-~~~~~~~pFG~G~R~C~G~~lA~~el~l~l 476 (516)
T PLN02290 402 IKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGR--P--F-APGRHFIPFAAGPRNCIGQAFAMMEAKIIL 476 (516)
T ss_pred eeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCC--C--C-CCCCeEecCCCCCCCCccHHHHHHHHHHHH
Confidence 3689999999999999999999999999 89999999999953 1 1 123479999999 99999999999
Q ss_pred -----ceeEEcCCC
Q 048628 73 -----SFDFATPSN 81 (105)
Q Consensus 73 -----~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 477 a~ll~~f~~~~~~~ 490 (516)
T PLN02290 477 AMLISKFSFTISDN 490 (516)
T ss_pred HHHHHhceEeeCCC
Confidence 999998765
No 25
>PLN03018 homomethionine N-hydroxylase
Probab=99.88 E-value=7.2e-23 Score=151.08 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=68.3
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCC---CccCcceeeeecCCC-CCCcccccCCC----
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDI---DVRGQHFELLSRGGG-GMCSGVSFCPP---- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~---~~~~~~~~~~~Fg~G-r~C~G~~lA~~---- 72 (105)
++++||.||||+.|.++.|++||||++|++|++|+||||++..+.. ........++|||.| |.|+|++||++
T Consensus 402 ~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~ 481 (534)
T PLN03018 402 TTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVM 481 (534)
T ss_pred eeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999642110 011234579999999 99999999999
Q ss_pred -------ceeEEcCCC
Q 048628 73 -------SFDFATPSN 81 (105)
Q Consensus 73 -------~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 482 ~la~ll~~f~~~~~~~ 497 (534)
T PLN03018 482 MLARFLQGFNWKLHQD 497 (534)
T ss_pred HHHHHHHhceEEeCCC
Confidence 999998765
No 26
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=7.8e-23 Score=148.12 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=78.3
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.|||||.|.++.+.+.+|+++|++|++|+|||||+++. ...+++.++|||.| |+|+|++||.+
T Consensus 404 ~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~---~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLa 480 (519)
T KOG0159|consen 404 LVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST---KTIHPFASLPFGFGPRMCLGRRIAELELHLLLA 480 (519)
T ss_pred ceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc---CCCCCceecCCCCCccccchHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998631 45578899999999 99999999999
Q ss_pred ----ceeEEcCCCCCCCCCCccceeeecccce
Q 048628 73 ----SFDFATPSNKPLDMGEGLGLTVEKFAPL 100 (105)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (105)
+|+++...+.++.... .+.+.|..++
T Consensus 481 rllr~f~V~~~~~~pv~~~~--~~il~P~~~l 510 (519)
T KOG0159|consen 481 RLLRNFKVEFLHEEPVEYVY--RFILVPNRPL 510 (519)
T ss_pred HHHHhcceeecCCCCcccee--EEEEcCCCCc
Confidence 9999987765555443 3344444433
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.86 E-value=3e-22 Score=145.89 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=68.8
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.+.+|+|+++|++|++|+||||++.. . .......++|||.| |.|+|++||.+
T Consensus 357 ~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~-~--~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la 433 (472)
T PLN02987 357 IEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNS-G--TTVPSNVFTPFGGGPRLCPGYELARVALSVFLH 433 (472)
T ss_pred eeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCC-C--CCCCCcceECCCCCCcCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999642 1 11223579999999 99999999999
Q ss_pred ----ceeEEcCCCCC
Q 048628 73 ----SFDFATPSNKP 83 (105)
Q Consensus 73 ----~f~~~~~~~~~ 83 (105)
+|+|++.++..
T Consensus 434 ~ll~~f~~~~~~~~~ 448 (472)
T PLN02987 434 RLVTRFSWVPAEQDK 448 (472)
T ss_pred HHHhceEEEECCCCc
Confidence 89999876643
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.86 E-value=2.5e-22 Score=145.94 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=66.6
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.+++|||+++|+||++|+|+||++. . .....++|||.| |.|+|++||.+
T Consensus 378 ~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~--~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la 451 (490)
T PLN02302 378 VEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNY--T----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLH 451 (490)
T ss_pred EeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCC--C----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999963 1 134578999999 99999999998
Q ss_pred ----ceeEEcCCC
Q 048628 73 ----SFDFATPSN 81 (105)
Q Consensus 73 ----~f~~~~~~~ 81 (105)
+|+|++.+.
T Consensus 452 ~ll~~f~~~~~~~ 464 (490)
T PLN02302 452 HFLLGYRLERLNP 464 (490)
T ss_pred HHHhcCeeEEcCC
Confidence 899998754
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.86 E-value=2.4e-22 Score=145.85 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=66.4
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++||.||||+.|.++.+++|||+++|++|++|+||||++. . ....++|||.| |.|+|++||++
T Consensus 354 ~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~--~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la 426 (463)
T PLN02196 354 VEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVA--P-----KPNTFMPFGNGTHSCPGNELAKLEISVLIH 426 (463)
T ss_pred cccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCC--C-----CCCcccCcCCCCCCCchHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999863 1 23579999999 99999999998
Q ss_pred ----ceeEEcCCC
Q 048628 73 ----SFDFATPSN 81 (105)
Q Consensus 73 ----~f~~~~~~~ 81 (105)
+|+|++.++
T Consensus 427 ~ll~~f~~~~~~~ 439 (463)
T PLN02196 427 HLTTKYRWSIVGT 439 (463)
T ss_pred HHHHhcEEEEcCC
Confidence 899998764
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1.4e-20 Score=134.53 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=74.5
Q ss_pred cEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccC--cceeeeecCCC-CCCcccccCCC---------
Q 048628 5 SYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRG--QHFELLSRGGG-GMCSGVSFCPP--------- 72 (105)
Q Consensus 5 g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~--~~~~~~~Fg~G-r~C~G~~lA~~--------- 72 (105)
.|.||+|..|.+++..+|+||++|++|+.|+|+||+++.++...++ -++.+||||+| +.|+|+.||.+
T Consensus 369 ~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~ 448 (486)
T KOG0684|consen 369 EYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLL 448 (486)
T ss_pred ceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999997532221222 23456999999 99999999999
Q ss_pred --ceeEEcCCCCCCCCCCccceeeecccceEE
Q 048628 73 --SFDFATPSNKPLDMGEGLGLTVEKFAPLEV 102 (105)
Q Consensus 73 --~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (105)
+||+++.++.-+..+.. .+...+.+++++
T Consensus 449 L~~fdleLid~~~P~~d~s-~~v~~P~g~v~i 479 (486)
T KOG0684|consen 449 LRHFDLELIDGPFPEVDYS-RMVMQPEGDVRI 479 (486)
T ss_pred HHHcceeecCCCCCCCCHH-HhhcCCCCCceE
Confidence 89999999733333221 235556666654
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=4.3e-19 Score=127.57 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=62.9
Q ss_pred CeeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccccCCC-------
Q 048628 1 MPTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
++++|+.||||+.|++.+++.||||++|++|++|+|+||. ..++|||+| |.|+|.+||++
T Consensus 307 ~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~------------~~~l~FG~G~H~ClG~~lA~~E~~~~l~ 374 (411)
T COG2124 307 VELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN------------NAHLPFGGGPHRCLGAALARLELKVALA 374 (411)
T ss_pred EeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC------------CCCcCCCCCCccccCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999995 368999999 99999999999
Q ss_pred ----ceeEEcCCC
Q 048628 73 ----SFDFATPSN 81 (105)
Q Consensus 73 ----~f~~~~~~~ 81 (105)
+|++....+
T Consensus 375 ~ll~r~~~~~~~~ 387 (411)
T COG2124 375 ELLRRFPLLLLAE 387 (411)
T ss_pred HHHHhCchhhcCC
Confidence 777776654
No 32
>PLN02648 allene oxide synthase
Probab=99.72 E-value=2.3e-18 Score=126.01 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=59.6
Q ss_pred cEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCc----ceeeeecCCC-CCCcccccCCC-------
Q 048628 5 SYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQ----HFELLSRGGG-GMCSGVSFCPP------- 72 (105)
Q Consensus 5 g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~----~~~~~~Fg~G-r~C~G~~lA~~------- 72 (105)
||.||||+.|+++.+.+|||+++|+||++|+|+||++.......... .....+||+| |.|+|++||++
T Consensus 369 g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la 448 (480)
T PLN02648 369 AFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVA 448 (480)
T ss_pred eEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999863211000000 1112234788 99999999998
Q ss_pred ----cee-EEcCCC
Q 048628 73 ----SFD-FATPSN 81 (105)
Q Consensus 73 ----~f~-~~~~~~ 81 (105)
+|+ |++.++
T Consensus 449 ~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 449 ELFLRYDSFEIEVD 462 (480)
T ss_pred HHHHHhCEEeecCC
Confidence 897 998765
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=67.10 E-value=5.2 Score=21.37 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.0
Q ss_pred CCCCCcCCC
Q 048628 34 VQPETFLTR 42 (105)
Q Consensus 34 f~P~R~l~~ 42 (105)
-||||||..
T Consensus 43 PDPERWLP~ 51 (59)
T PF08492_consen 43 PDPERWLPK 51 (59)
T ss_pred CCccccCch
Confidence 479999964
No 34
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=61.04 E-value=8 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=13.5
Q ss_pred CeeccEEeCCCCEEEE
Q 048628 1 MPTCSYHIFASTQFFI 16 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~ 16 (105)
+.++|..|||||.+.-
T Consensus 79 i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 79 IQIGGILIPKGTYLYG 94 (200)
T ss_pred eEECCEEeCCCCEEEE
Confidence 4679999999998765
No 35
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=51.55 E-value=6.3 Score=17.92 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=4.0
Q ss_pred CCCCCc
Q 048628 34 VQPETF 39 (105)
Q Consensus 34 f~P~R~ 39 (105)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 467776
No 36
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=46.32 E-value=23 Score=21.44 Aligned_cols=39 Identities=10% Similarity=-0.089 Sum_probs=28.3
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcC
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFL 40 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l 40 (105)
.|.-..||++|.++.+.+.-|....+-.=-++..|-++.
T Consensus 58 kIk~I~iP~~tIv~p~~~~rha~G~vi~v~e~~~p~~vE 96 (112)
T PF01629_consen 58 KIKKIEIPPNTIVMPCAYMRHALGSVIDVGEEGPPRPVE 96 (112)
T ss_pred EEEEEecCCCCEEEEchHhhccCccEEEEEeccCceeec
Confidence 456778999999999999988877665433444455553
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=46.08 E-value=8.7 Score=16.83 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=3.5
Q ss_pred CCCCCc
Q 048628 34 VQPETF 39 (105)
Q Consensus 34 f~P~R~ 39 (105)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 38
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=33.58 E-value=39 Score=21.40 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=14.6
Q ss_pred CeeccEEeCCCCEEEEec
Q 048628 1 MPTCSYHIFASTQFFINA 18 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~~ 18 (105)
++|+|..||+|+.-+..+
T Consensus 56 v~igGk~l~AG~Ysl~ti 73 (145)
T PF11138_consen 56 VTIGGKKLKAGTYSLFTI 73 (145)
T ss_pred eEECCEEcCCeeEEEEEe
Confidence 478999999999876654
No 39
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=33.15 E-value=10 Score=16.76 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=4.4
Q ss_pred CCCCCcC
Q 048628 34 VQPETFL 40 (105)
Q Consensus 34 f~P~R~l 40 (105)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677773
No 40
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=31.82 E-value=40 Score=25.13 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=13.9
Q ss_pred CeeccEEeCCCCEEEEe
Q 048628 1 MPTCSYHIFASTQFFIN 17 (105)
Q Consensus 1 ~~i~g~~ip~g~~v~~~ 17 (105)
+.++|..||+||.+.-.
T Consensus 282 ~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 282 IQAGDLVIPKGTVLYGT 298 (410)
T ss_pred eeeCCEEecCCCEEEEE
Confidence 46889999999987654
No 41
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=27.32 E-value=42 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCCCCCCC
Q 048628 22 QRDPRIREEQCKVQPET 38 (105)
Q Consensus 22 ~~~~~~~~~p~~f~P~R 38 (105)
+.|+.+|.|...|+|-|
T Consensus 195 n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 195 NEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCcccccCccccCCCC
Confidence 67788888889998877
No 42
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=27.09 E-value=25 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCcccc
Q 048628 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVS 68 (105)
Q Consensus 32 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~~ 68 (105)
.+|+|++|=.- --....++...+-|..| -.|.|-.
T Consensus 35 aeYnP~qFpGl--v~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGL--VYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCee--EEEecCCcceEEEEecCcEEEeccC
Confidence 36888888321 00122345678889999 9999854
No 43
>KOG3438 consensus DNA-directed RNA polymerase, subunit L [Transcription]
Probab=26.50 E-value=24 Score=21.00 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=7.8
Q ss_pred CeeccEEeCCC
Q 048628 1 MPTCSYHIFAS 11 (105)
Q Consensus 1 ~~i~g~~ip~g 11 (105)
|+++||.||==
T Consensus 43 VefcGYtIPHP 53 (105)
T KOG3438|consen 43 VEFCGYTIPHP 53 (105)
T ss_pred eEEEeccCCCC
Confidence 46788888843
No 44
>COG1417 Uncharacterized conserved protein [Function unknown]
Probab=25.87 E-value=1.1e+02 Score=21.48 Aligned_cols=65 Identities=8% Similarity=-0.070 Sum_probs=37.7
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCCCCCCCCCCCcCCCCCCCCccCcceeeeecCCCCCCcccccCCC
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIREEQCKVQPETFLTRHKDIDVRGQHFELLSRGGGGMCSGVSFCPP 72 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~Gr~C~G~~lA~~ 72 (105)
.|....||++|.+.+..++-|.-..+..=.+ =.|.++... .......|+++..|+.--|.-|...
T Consensus 87 kIk~V~lPpnTVv~p~~~arna~G~vldVve-g~Pr~vEe~-----R~id~AvFla~~dG~IeKGDLLGVl 151 (288)
T COG1417 87 KIKEVELPPNTVVVPLPYARNALGHVLDVVE-GKPRPVEEE-----RKIDQAVFLAVRDGRIEKGDLLGVL 151 (288)
T ss_pred EEEEeccCCCcEEEEchhhcCcCccEEeecc-Ccccccccc-----cccceEEEEEeccCEEecCceEEEE
Confidence 4667789999999999998877655543222 345555431 1112235666666643334444333
No 45
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=25.12 E-value=31 Score=18.11 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=7.1
Q ss_pred ecCCC-CCCc
Q 048628 57 SRGGG-GMCS 65 (105)
Q Consensus 57 ~Fg~G-r~C~ 65 (105)
+||.| |.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 68999 8873
No 46
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.02 E-value=26 Score=22.76 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCCCCCcCCCCCCCCccCcceeeeecCCC-CCCccc
Q 048628 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGV 67 (105)
Q Consensus 32 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G-r~C~G~ 67 (105)
.+|+|+||=.- -.....+....+-|+.| =.|.|-
T Consensus 29 ~eY~P~~fpgl--i~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGL--VYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEE--EEEccCCcEEEEEECCCeEEEEcc
Confidence 47889988421 11122345577889999 889876
No 47
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=24.81 E-value=45 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=22.0
Q ss_pred EeCCCCEEEEecchhccCCCCCCCCCCCCC-CCcCCC
Q 048628 7 HIFASTQFFINACQLQRDPRIREEQCKVQP-ETFLTR 42 (105)
Q Consensus 7 ~ip~g~~v~~~~~~~~~~~~~~~~p~~f~P-~R~l~~ 42 (105)
.|....-|..+++. -.+++|-+|+++.| +|||..
T Consensus 107 sIK~~dgv~assfk--~g~k~fi~p~KllPl~RFLP~ 141 (215)
T KOG3262|consen 107 SIKPSDGVQASSFK--PGDKLFIDPDKLLPLDRFLPQ 141 (215)
T ss_pred EEecCCCceeeccc--CCCeEEecccccCcHhhcCCC
Confidence 44444444444443 33567899999999 899964
No 48
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=23.41 E-value=59 Score=19.96 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=16.8
Q ss_pred eeccEEeCCCCEEEEecchhccCCCCCC
Q 048628 2 PTCSYHIFASTQFFINACQLQRDPRIRE 29 (105)
Q Consensus 2 ~i~g~~ip~g~~v~~~~~~~~~~~~~~~ 29 (105)
++.|-.||+|+.|+.--. .|+++|.
T Consensus 78 ~~~g~~i~~GtWv~~~k~---~ddelWe 102 (122)
T PF14550_consen 78 EIGGETIPKGTWVVGVKI---TDDELWE 102 (122)
T ss_pred ccCCeeecceEEEEEEEe---cCHHHHH
Confidence 567889999998854433 3455663
No 49
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=20.71 E-value=29 Score=19.44 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=14.8
Q ss_pred cCCCCCCCCCCCCCCCcCC
Q 048628 23 RDPRIREEQCKVQPETFLT 41 (105)
Q Consensus 23 ~~~~~~~~p~~f~P~R~l~ 41 (105)
.|+.+-++.++|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 3456667888899999995
Done!