Query 048633
Match_columns 130
No_of_seqs 163 out of 1526
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 2.7E-32 5.8E-37 204.0 9.2 108 21-129 263-455 (499)
2 PLN02169 fatty acid (omega-1)- 100.0 1.1E-29 2.3E-34 192.2 9.2 92 38-129 302-459 (500)
3 KOG0156 Cytochrome P450 CYP2 s 100.0 4.9E-29 1.1E-33 187.4 11.5 104 25-129 264-447 (489)
4 PLN02394 trans-cinnamate 4-mon 100.0 4.4E-29 9.5E-34 188.7 11.3 106 24-129 273-457 (503)
5 KOG0157 Cytochrome P450 CYP4/C 100.0 3.5E-29 7.5E-34 189.3 10.1 107 23-129 271-455 (497)
6 PLN02500 cytochrome P450 90B1 100.0 4.9E-29 1.1E-33 188.1 9.8 105 25-129 263-451 (490)
7 KOG0159 Cytochrome P450 CYP11/ 100.0 4E-29 8.6E-34 185.2 8.6 93 36-129 315-477 (519)
8 PLN02971 tryptophan N-hydroxyl 100.0 4.1E-29 8.9E-34 190.6 8.7 91 39-129 329-491 (543)
9 PLN02183 ferulate 5-hydroxylas 100.0 6.7E-29 1.5E-33 188.4 9.3 91 39-129 306-466 (516)
10 PTZ00404 cytochrome P450; Prov 100.0 1.3E-28 2.9E-33 185.3 10.0 100 25-129 263-441 (482)
11 PF00067 p450: Cytochrome P450 100.0 9.2E-29 2E-33 182.2 8.9 91 39-129 264-424 (463)
12 PLN02426 cytochrome P450, fami 100.0 1.9E-28 4.1E-33 185.5 10.5 105 25-129 278-457 (502)
13 PLN03234 cytochrome P450 83B1; 100.0 2.1E-28 4.5E-33 184.9 10.1 92 38-129 289-453 (499)
14 PLN02966 cytochrome P450 83A1 100.0 2E-28 4.3E-33 185.3 10.0 91 39-129 291-454 (502)
15 PLN02774 brassinosteroid-6-oxi 100.0 4.5E-28 9.9E-33 181.8 9.6 102 25-129 244-425 (463)
16 PLN02687 flavonoid 3'-monooxyg 100.0 6.3E-28 1.4E-32 183.1 10.0 91 39-129 299-463 (517)
17 PLN00168 Cytochrome P450; Prov 99.9 6.1E-28 1.3E-32 183.3 9.7 92 38-129 307-474 (519)
18 PLN03141 3-epi-6-deoxocathaste 99.9 1.1E-27 2.3E-32 179.3 9.6 102 24-129 232-412 (452)
19 PLN02290 cytokinin trans-hydro 99.9 7E-28 1.5E-32 182.7 8.6 88 39-129 318-474 (516)
20 PLN02738 carotene beta-ring hy 99.9 1.2E-27 2.6E-32 185.1 9.5 105 25-129 374-553 (633)
21 PLN03195 fatty acid omega-hydr 99.9 7.7E-28 1.7E-32 182.6 8.2 106 24-129 270-475 (516)
22 PLN03112 cytochrome P450 famil 99.9 2.1E-27 4.5E-32 180.1 10.5 105 25-129 274-462 (514)
23 PLN02655 ent-kaurene oxidase 99.9 2E-27 4.3E-32 178.4 10.1 104 25-129 245-422 (466)
24 PLN03018 homomethionine N-hydr 99.9 4.1E-27 8.9E-32 179.4 10.8 91 39-129 316-481 (534)
25 PLN00110 flavonoid 3',5'-hydro 99.9 3.4E-27 7.4E-32 178.8 9.4 105 25-129 267-454 (504)
26 PLN02196 abscisic acid 8'-hydr 99.9 2.9E-27 6.4E-32 177.4 8.9 100 25-129 247-423 (463)
27 PLN02936 epsilon-ring hydroxyl 99.9 6.9E-27 1.5E-31 176.5 9.4 105 25-129 261-441 (489)
28 PLN02302 ent-kaurenoic acid ox 99.9 1.5E-26 3.2E-31 174.3 9.5 101 25-129 266-448 (490)
29 KOG0684 Cytochrome P450 [Secon 99.9 3E-26 6.4E-31 167.3 10.1 93 38-130 274-444 (486)
30 COG2124 CypX Cytochrome P450 [ 99.9 1.2E-26 2.6E-31 172.1 8.1 99 21-129 211-371 (411)
31 PLN02987 Cytochrome P450, fami 99.9 6.1E-26 1.3E-30 170.8 10.5 104 25-129 250-430 (472)
32 PLN02648 allene oxide synthase 99.8 1.2E-19 2.5E-24 137.0 8.6 82 45-129 280-445 (480)
33 PF08492 SRP72: SRP72 RNA-bind 81.6 1.2 2.7E-05 24.2 1.7 21 77-97 32-52 (59)
34 PF05952 ComX: Bacillus compet 80.5 2 4.4E-05 23.2 2.3 19 58-76 3-21 (57)
35 COG2101 SPT15 TATA-box binding 77.3 0.6 1.3E-05 31.1 -0.4 34 87-120 36-69 (185)
36 cd04518 TBP_archaea archaeal T 65.6 1.2 2.6E-05 29.8 -1.1 35 86-120 29-63 (174)
37 PRK14759 potassium-transportin 64.4 2.9 6.2E-05 19.3 0.4 7 57-63 16-22 (29)
38 PRK00394 transcription factor; 60.0 2 4.3E-05 28.8 -0.8 34 86-119 28-61 (179)
39 PF08105 Antimicrobial10: Metc 57.6 26 0.00057 18.2 3.2 31 61-91 13-44 (52)
40 PF14483 Cut8_M: Cut8 dimerisa 56.8 23 0.0005 17.3 3.2 21 56-76 14-35 (38)
41 PLN00062 TATA-box-binding prot 54.4 2.2 4.8E-05 28.6 -1.3 35 86-120 29-63 (179)
42 PF07818 HCNGP: HCNGP-like pro 53.7 18 0.00039 21.7 2.7 31 65-95 40-74 (96)
43 KOG3506 40S ribosomal protein 53.1 6.4 0.00014 21.0 0.6 11 108-118 12-22 (56)
44 cd00652 TBP_TLF TATA box bindi 51.9 2.9 6.2E-05 27.9 -1.1 34 86-119 29-62 (174)
45 cd04516 TBP_eukaryotes eukaryo 46.7 3.5 7.5E-05 27.5 -1.3 34 86-119 29-62 (174)
46 KOG3302 TATA-box binding prote 40.7 6.2 0.00013 26.8 -0.8 35 86-120 50-84 (200)
47 PF11227 DUF3025: Protein of u 40.4 18 0.00038 25.1 1.3 16 77-92 196-211 (212)
48 PF07886 BA14K: BA14K-like pro 36.3 36 0.00078 15.9 1.7 15 104-118 17-31 (31)
49 PF07849 DUF1641: Protein of u 36.1 53 0.0012 16.3 2.4 17 58-74 13-29 (42)
50 KOG2154 Predicted nucleolar pr 35.5 79 0.0017 24.7 4.2 40 46-85 365-405 (505)
51 PRK13467 F0F1 ATP synthase sub 35.1 71 0.0015 17.8 3.0 23 54-76 20-42 (66)
52 PF00352 TBP: Transcription fa 34.6 2.7 5.8E-05 24.5 -3.0 34 87-120 32-65 (86)
53 TIGR01260 ATP_synt_c ATP synth 33.7 74 0.0016 17.1 2.9 22 55-76 11-32 (58)
54 KOG2376 Signal recognition par 33.7 30 0.00064 27.8 1.7 21 77-97 570-590 (652)
55 smart00766 DnaG_DnaB_bind DNA 32.4 36 0.00078 20.1 1.8 18 59-76 3-20 (125)
56 TIGR03764 ICE_PFGI_1_parB inte 32.3 42 0.0009 24.0 2.2 18 78-95 217-234 (258)
57 PRK03636 hypothetical protein; 29.9 47 0.001 22.4 2.1 20 56-75 25-44 (179)
58 PRK13466 F0F1 ATP synthase sub 29.5 1E+02 0.0022 17.2 3.0 23 54-76 20-42 (66)
59 KOG2311 NAD/FAD-utilizing prot 27.9 58 0.0013 25.9 2.4 44 77-120 245-307 (679)
60 PRK03057 hypothetical protein; 27.5 51 0.0011 22.2 1.9 20 56-75 23-42 (180)
61 PRK05880 F0F1 ATP synthase sub 26.8 1.1E+02 0.0023 17.8 2.9 24 53-76 28-51 (81)
62 PF15176 LRR19-TM: Leucine-ric 26.3 1.5E+02 0.0032 18.1 3.5 47 47-93 20-74 (102)
63 PF11297 DUF3098: Protein of u 26.1 35 0.00076 19.2 0.8 14 80-93 28-41 (69)
64 PTZ00218 40S ribosomal protein 25.8 31 0.00068 18.4 0.5 15 109-123 11-27 (54)
65 PF10454 DUF2458: Protein of u 24.9 1.3E+02 0.0029 19.5 3.4 24 53-76 8-31 (150)
66 PF13993 YccJ: YccJ-like prote 24.4 86 0.0019 17.2 2.0 30 47-76 8-38 (69)
67 PRK06876 F0F1 ATP synthase sub 23.4 1.5E+02 0.0032 17.1 3.1 23 54-76 28-50 (78)
68 PF14575 EphA2_TM: Ephrin type 23.1 12 0.00025 21.3 -1.5 10 77-86 54-63 (75)
69 MTH00222 ATP9 ATP synthase F0 23.1 1.5E+02 0.0031 17.1 3.0 23 54-76 28-50 (77)
70 PRK07558 F0F1 ATP synthase sub 22.9 1.4E+02 0.0031 17.0 2.9 23 54-76 26-48 (74)
71 cd04517 TLF TBP-like factors ( 20.5 17 0.00037 24.2 -1.4 34 86-120 30-63 (174)
72 PF07145 PAM2: Ataxin-2 C-term 20.2 71 0.0015 12.9 0.9 9 83-91 8-16 (18)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.7e-32 Score=204.00 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHHhhh---------------hHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh---------
Q 048633 21 RKKIKDLLGYAEEHCR---------------AESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS--------- 76 (130)
Q Consensus 21 ~~~~~dll~~~~~~~~---------------~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~--------- 76 (130)
+...+|+++.+++... +....+..+++||.|||++++++++|+|++||++|+|+|+
T Consensus 263 ~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~ 342 (499)
T KOG0158|consen 263 NIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEK 342 (499)
T ss_pred CCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhccc
Confidence 3455677777766442 2356799999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------cCCCCCCCCCCCCCCCCCC
Q 048633 77 -------------------------------------------------------------RDESTRDHAHSFMPKRFLG 95 (130)
Q Consensus 77 -------------------------------------------------------------~d~~~~~~p~~F~P~R~l~ 95 (130)
|||++||||++|+||||.+
T Consensus 343 ~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~ 422 (499)
T KOG0158|consen 343 EGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEE 422 (499)
T ss_pred CCCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCC
Confidence 9999999999999999998
Q ss_pred CCCCCCCCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 96 SEVDFIGRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 96 ~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
++.. ..++..|+|||.|||.|+|.+||.+|+++
T Consensus 423 ~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~ 455 (499)
T KOG0158|consen 423 ENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKL 455 (499)
T ss_pred Cccc-ccCCccccCCCCCccccHHHHHHHHHHHH
Confidence 7744 44577999999999999999999999875
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.96 E-value=1.1e-29 Score=192.22 Aligned_cols=92 Identities=22% Similarity=0.365 Sum_probs=82.1
Q ss_pred HHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------------------------
Q 048633 38 ESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------------------------- 76 (130)
Q Consensus 38 ~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------------------------- 76 (130)
..+.+.++++||+|||+++++|++++|++||++|+|+++
T Consensus 302 i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d 381 (500)
T PLN02169 302 IRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKFDNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKP 381 (500)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhCCHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCC
Confidence 467799999999999999999999999999999999998
Q ss_pred -----------------------cCCCCC-CCCCCCCCCCCCCCCCCCC-CCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 77 -----------------------RDESTR-DHAHSFMPKRFLGSEVDFI-GRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 77 -----------------------~d~~~~-~~p~~F~P~R~l~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
|||++| +||++|+||||++++.... ..+..|+|||+|+|.|+|++||++|++.
T Consensus 382 ~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~ 459 (500)
T PLN02169 382 DVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKI 459 (500)
T ss_pred CCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHH
Confidence 999999 8999999999997543221 2356899999999999999999999875
No 3
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.9e-29 Score=187.45 Aligned_cols=104 Identities=40% Similarity=0.655 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhh----------hHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------
Q 048633 25 KDLLGYAEEHCR----------AESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------ 76 (130)
Q Consensus 25 ~dll~~~~~~~~----------~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------ 76 (130)
+|++|.+++... +....+.++++||.|||++++.|++.+|++||++|+|+++
T Consensus 264 ~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~ 343 (489)
T KOG0156|consen 264 RDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLP 343 (489)
T ss_pred CcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhc
Confidence 566666665422 1356689999999999999999999999999999999998
Q ss_pred ----------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048633 77 ----------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRN 104 (130)
Q Consensus 77 ----------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~ 104 (130)
|||++|+||++|+||||++++ +.....
T Consensus 344 ~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~ 422 (489)
T KOG0156|consen 344 KLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLD 422 (489)
T ss_pred cCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCc
Confidence 999999999999999999975 222356
Q ss_pred ccccccCCCCCCCCCHHHHHHcccc
Q 048633 105 FESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 105 ~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
..++|||.|+|.|||..+|+++++.
T Consensus 423 ~~~iPFG~GRR~CpG~~La~~~l~l 447 (489)
T KOG0156|consen 423 FKLIPFGSGRRICPGEGLARAELFL 447 (489)
T ss_pred eEecCCCCCcCCCCcHHHHHHHHHH
Confidence 7899999999999999999999864
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.96 E-value=4.4e-29 Score=188.75 Aligned_cols=106 Identities=30% Similarity=0.487 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhh-------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh--------------------
Q 048633 24 IKDLLGYAEEHC-------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS-------------------- 76 (130)
Q Consensus 24 ~~dll~~~~~~~-------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~-------------------- 76 (130)
.+|+++.+++.. ++....+.++++||+|||+++++|++++|++||++|+++++
T Consensus 273 ~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~l 352 (503)
T PLN02394 273 LKCAIDHILEAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKL 352 (503)
T ss_pred hhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhhC
Confidence 357777777532 12244577888999999999999999999999999999988
Q ss_pred --------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q 048633 77 --------------------------------------------------RDESTRDHAHSFMPKRFLGSEVD--FIGRN 104 (130)
Q Consensus 77 --------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~--~~~~~ 104 (130)
|||++|+||++|+||||++.+.. ....+
T Consensus 353 pyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~ 432 (503)
T PLN02394 353 PYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGND 432 (503)
T ss_pred HHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCC
Confidence 99999999999999999975421 12235
Q ss_pred ccccccCCCCCCCCCHHHHHHcccc
Q 048633 105 FESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 105 ~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
..++|||+|+|.|+|++||.+|++.
T Consensus 433 ~~~~pFg~G~R~CiG~~~A~~e~~~ 457 (503)
T PLN02394 433 FRFLPFGVGRRSCPGIILALPILGI 457 (503)
T ss_pred CceeCCCCCCCCCCCHHHHHHHHHH
Confidence 5799999999999999999999874
No 5
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=189.32 Aligned_cols=107 Identities=28% Similarity=0.360 Sum_probs=90.4
Q ss_pred hHHHHHHH-HHHh-----hhhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh--------------------
Q 048633 23 KIKDLLGY-AEEH-----CRAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS-------------------- 76 (130)
Q Consensus 23 ~~~dll~~-~~~~-----~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~-------------------- 76 (130)
...|+++. ..+. .++..+.+.++++||+|||+++++|++++|+.||++|+++++
T Consensus 271 ~~~d~L~~~~~~~~~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~ 350 (497)
T KOG0157|consen 271 KRLDFLDTLLLEEDKPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQ 350 (497)
T ss_pred hhhhHHHHHHHhccCCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhh
Confidence 35677774 2221 233477899999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 048633 77 ---------------------------------------------------RDESTRD-HAHSFMPKRFLGSEVDFIGRN 104 (130)
Q Consensus 77 ---------------------------------------------------~d~~~~~-~p~~F~P~R~l~~~~~~~~~~ 104 (130)
||+.+|+ ||++|+||||+++......++
T Consensus 351 m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~ 430 (497)
T KOG0157|consen 351 MKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHP 430 (497)
T ss_pred hHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCC
Confidence 9999995 999999999997644334457
Q ss_pred ccccccCCCCCCCCCHHHHHHcccc
Q 048633 105 FESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 105 ~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
++|+|||+|+|.|+|+.||++||++
T Consensus 431 ~~fipFsaGpR~CiG~~fA~lemKv 455 (497)
T KOG0157|consen 431 FAFIPFSAGPRNCIGQKFAMLEMKV 455 (497)
T ss_pred ccccCCCCCcccchhHHHHHHHHHH
Confidence 8999999999999999999999976
No 6
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=4.9e-29 Score=188.08 Aligned_cols=105 Identities=25% Similarity=0.337 Sum_probs=88.9
Q ss_pred HHHHHHHHHhh----hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------
Q 048633 25 KDLLGYAEEHC----RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------ 76 (130)
Q Consensus 25 ~dll~~~~~~~----~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------ 76 (130)
.|+++.+++.. .+..+.+.++++||+|||+++++|++++|++||++|+|+++
T Consensus 263 ~d~l~~ll~~~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~ 342 (490)
T PLN02500 263 DDLLGWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKK 342 (490)
T ss_pred chHHHHHHhccCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhcc
Confidence 57888777532 33467789999999999999999999999999999999876
Q ss_pred --------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCC-----
Q 048633 77 --------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFI----- 101 (130)
Q Consensus 77 --------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~----- 101 (130)
|||++|+||++|+||||++++....
T Consensus 343 lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~ 422 (490)
T PLN02500 343 MEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSS 422 (490)
T ss_pred CHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCccccccccc
Confidence 9999999999999999997542111
Q ss_pred -CCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 102 -GRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 102 -~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
..+..++|||+|+|.|+|++||++|++.
T Consensus 423 ~~~~~~~lpFG~G~R~CiG~~~A~~el~~ 451 (490)
T PLN02500 423 SATTNNFMPFGGGPRLCAGSELAKLEMAV 451 (490)
T ss_pred CCCCCCCcCCCCCCCCCCcHHHHHHHHHH
Confidence 1356799999999999999999999875
No 7
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4e-29 Score=185.23 Aligned_cols=93 Identities=31% Similarity=0.455 Sum_probs=84.5
Q ss_pred hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh---------------------------------------
Q 048633 36 RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS--------------------------------------- 76 (130)
Q Consensus 36 ~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~--------------------------------------- 76 (130)
++...+++++++||.|||++++.|++|.|++||++|++|++
T Consensus 315 k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~ 394 (519)
T KOG0159|consen 315 KDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVP 394 (519)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceecccc
Confidence 34467799999999999999999999999999999999998
Q ss_pred -------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCHHHHHH
Q 048633 77 -------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDLPLDIT 125 (130)
Q Consensus 77 -------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~ 125 (130)
+||.+|++|++|+||||+..+. ...+++.++|||.|+|+|+||++|.+
T Consensus 395 ~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAEl 473 (519)
T KOG0159|consen 395 GNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAEL 473 (519)
T ss_pred ccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHH
Confidence 8999999999999999998774 34568899999999999999999999
Q ss_pred cccc
Q 048633 126 MLYP 129 (130)
Q Consensus 126 ~~~~ 129 (130)
||-+
T Consensus 474 El~l 477 (519)
T KOG0159|consen 474 ELHL 477 (519)
T ss_pred HHHH
Confidence 9854
No 8
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=4.1e-29 Score=190.63 Aligned_cols=91 Identities=29% Similarity=0.482 Sum_probs=81.1
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
.+.+.++++||+|||+++++|++++|++||++|+|+++
T Consensus 329 ~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~ 408 (543)
T PLN02971 329 KPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLP 408 (543)
T ss_pred HHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcc
Confidence 56799999999999999999999999999999999998
Q ss_pred ----------------------------cCCCCCCCCCCCCCCCCCCCCCC--CCCCCccccccCCCCCCCCCHHHHHHc
Q 048633 77 ----------------------------RDESTRDHAHSFMPKRFLGSEVD--FIGRNFESIPFGAGRRICPDLPLDITM 126 (130)
Q Consensus 77 ----------------------------~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~ 126 (130)
|||++|+||++|+||||+++... ....+..++|||+|+|.|+|++||++|
T Consensus 409 r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e 488 (543)
T PLN02971 409 HVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAI 488 (543)
T ss_pred eecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999975422 112356799999999999999999999
Q ss_pred ccc
Q 048633 127 LYP 129 (130)
Q Consensus 127 ~~~ 129 (130)
++.
T Consensus 489 ~~~ 491 (543)
T PLN02971 489 TTM 491 (543)
T ss_pred HHH
Confidence 875
No 9
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=6.7e-29 Score=188.41 Aligned_cols=91 Identities=38% Similarity=0.729 Sum_probs=80.7
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
...+.++++||+|||+++++|++++|++||++|+|+++
T Consensus 306 ~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r 385 (516)
T PLN02183 306 KAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLH 385 (516)
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccceee
Confidence 55688899999999999999999999999999999987
Q ss_pred ---------------------------cCCCCCCCCCCCCCCCCCCCCCC-CCCCCccccccCCCCCCCCCHHHHHHccc
Q 048633 77 ---------------------------RDESTRDHAHSFMPKRFLGSEVD-FIGRNFESIPFGAGRRICPDLPLDITMLY 128 (130)
Q Consensus 77 ---------------------------~d~~~~~~p~~F~P~R~l~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~ 128 (130)
|||++|+||++|+||||++++.. .......++|||+|+|.|+|++||++|++
T Consensus 386 ~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~ 465 (516)
T PLN02183 386 ETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALD 465 (516)
T ss_pred eccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHH
Confidence 99999999999999999975432 12234579999999999999999999987
Q ss_pred c
Q 048633 129 P 129 (130)
Q Consensus 129 ~ 129 (130)
.
T Consensus 466 l 466 (516)
T PLN02183 466 L 466 (516)
T ss_pred H
Confidence 4
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=1.3e-28 Score=185.30 Aligned_cols=100 Identities=28% Similarity=0.432 Sum_probs=86.4
Q ss_pred HHHHHHHHHhh-----hh---HHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh--------------------
Q 048633 25 KDLLGYAEEHC-----RA---ESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS-------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~-----~~---~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~-------------------- 76 (130)
+|+++.+++.. .+ ..+.++++++||+|||+++++|++++|++||++|+|+++
T Consensus 263 ~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L 342 (482)
T PTZ00404 263 RDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQST 342 (482)
T ss_pred ccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccC
Confidence 46777666542 11 345688999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048633 77 ---------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNF 105 (130)
Q Consensus 77 ---------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~ 105 (130)
|||++|+||++|+||||++.. .+.
T Consensus 343 ~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~ 417 (482)
T PTZ00404 343 PYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SND 417 (482)
T ss_pred hHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCC
Confidence 999999999999999998642 356
Q ss_pred cccccCCCCCCCCCHHHHHHcccc
Q 048633 106 ESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 106 ~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
.++|||+|+|.|+|++||++|++.
T Consensus 418 ~~~pFg~G~R~C~G~~~A~~e~~~ 441 (482)
T PTZ00404 418 AFMPFSIGPRNCVGQQFAQDELYL 441 (482)
T ss_pred ceeccCCCCCCCccHHHHHHHHHH
Confidence 899999999999999999999875
No 11
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=9.2e-29 Score=182.16 Aligned_cols=91 Identities=32% Similarity=0.477 Sum_probs=80.2
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
...++.+++||+|||+.+++|++++|++||++|+++++
T Consensus 264 ~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~ 343 (463)
T PF00067_consen 264 AAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLP 343 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56789999999999999999999999999999999998
Q ss_pred ----------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCHHHHHHccc
Q 048633 77 ----------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDLPLDITMLY 128 (130)
Q Consensus 77 ----------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~ 128 (130)
+||++|+||++|+||||++.+.........++|||.|+|.|||++||.+|++
T Consensus 344 R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~ 423 (463)
T PF00067_consen 344 RVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMK 423 (463)
T ss_dssp EEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHH
Confidence 9999999999999999999875223456789999999999999999999987
Q ss_pred c
Q 048633 129 P 129 (130)
Q Consensus 129 ~ 129 (130)
.
T Consensus 424 ~ 424 (463)
T PF00067_consen 424 V 424 (463)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.95 E-value=1.9e-28 Score=185.52 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=89.4
Q ss_pred HHHHHHHHHhh---hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-------------------------
Q 048633 25 KDLLGYAEEHC---RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~---~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------- 76 (130)
.|+++.+++.. ++..+.++++++||+|||+++++|++|+|++||++|+|+++
T Consensus 278 ~dll~~ll~~~~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~ 357 (502)
T PLN02426 278 KDLLSRFMASINDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLH 357 (502)
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHH
Confidence 57788777643 33467799999999999999999999999999999999997
Q ss_pred ----------------------------------------------cCCCCC-CCCCCCCCCCCCCCCCCCCCCCccccc
Q 048633 77 ----------------------------------------------RDESTR-DHAHSFMPKRFLGSEVDFIGRNFESIP 109 (130)
Q Consensus 77 ----------------------------------------------~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~ 109 (130)
|||++| +||++|+||||++++......+..++|
T Consensus 358 avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~p 437 (502)
T PLN02426 358 AALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPV 437 (502)
T ss_pred HHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCC
Confidence 999999 999999999999743211223557999
Q ss_pred cCCCCCCCCCHHHHHHcccc
Q 048633 110 FGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 110 Fg~G~r~C~G~~~A~~~~~~ 129 (130)
||+|+|.|+|+++|++|++.
T Consensus 438 Fg~G~R~CiG~~~A~~e~~~ 457 (502)
T PLN02426 438 FQAGLRVCLGKEMALMEMKS 457 (502)
T ss_pred CCCCCCCCccHHHHHHHHHH
Confidence 99999999999999999874
No 13
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.95 E-value=2.1e-28 Score=184.94 Aligned_cols=92 Identities=36% Similarity=0.733 Sum_probs=81.1
Q ss_pred HHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------------------------
Q 048633 38 ESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------------------------- 76 (130)
Q Consensus 38 ~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------------------------- 76 (130)
..+++.++++||+|||+++++|++++|++||++|+++++
T Consensus 289 i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~ 368 (499)
T PLN03234 289 VKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILL 368 (499)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccC
Confidence 356789999999999999999999999999999999986
Q ss_pred -----------------------------cCCCCC-CCCCCCCCCCCCCCCCC--CCCCCccccccCCCCCCCCCHHHHH
Q 048633 77 -----------------------------RDESTR-DHAHSFMPKRFLGSEVD--FIGRNFESIPFGAGRRICPDLPLDI 124 (130)
Q Consensus 77 -----------------------------~d~~~~-~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~ 124 (130)
|||++| +||++|+||||+++... ....+..++|||+|+|.|+|+++|+
T Consensus 369 ~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~ 448 (499)
T PLN03234 369 HRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGI 448 (499)
T ss_pred CcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHH
Confidence 999999 89999999999975432 1233567999999999999999999
Q ss_pred Hcccc
Q 048633 125 TMLYP 129 (130)
Q Consensus 125 ~~~~~ 129 (130)
+||+.
T Consensus 449 ~e~~~ 453 (499)
T PLN03234 449 AMVEI 453 (499)
T ss_pred HHHHH
Confidence 99864
No 14
>PLN02966 cytochrome P450 83A1
Probab=99.95 E-value=2e-28 Score=185.31 Aligned_cols=91 Identities=40% Similarity=0.750 Sum_probs=80.4
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
...++++++||+|||+++++|++++|++||++|+|+++
T Consensus 291 ~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~ 370 (502)
T PLN02966 291 KAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLL 370 (502)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccc
Confidence 55688999999999999999999999999999999987
Q ss_pred ------------------------------cCCCCC-CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCHHHHHH
Q 048633 77 ------------------------------RDESTR-DHAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDLPLDIT 125 (130)
Q Consensus 77 ------------------------------~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~ 125 (130)
|||++| +||++|+||||++........+..++|||+|+|.|+|++||++
T Consensus 371 ~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~ 450 (502)
T PLN02966 371 IPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAA 450 (502)
T ss_pred cCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHH
Confidence 999999 9999999999997543222235689999999999999999999
Q ss_pred cccc
Q 048633 126 MLYP 129 (130)
Q Consensus 126 ~~~~ 129 (130)
|++.
T Consensus 451 el~~ 454 (502)
T PLN02966 451 MLEV 454 (502)
T ss_pred HHHH
Confidence 9864
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=4.5e-28 Score=181.78 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=86.0
Q ss_pred HHHHHHHHHhh--------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh--------------------
Q 048633 25 KDLLGYAEEHC--------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS-------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~--------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~-------------------- 76 (130)
+|+++.++... .+....+.++++||+|||+++++|++++|++||++|+++++
T Consensus 244 ~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l 323 (463)
T PLN02774 244 TDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDY 323 (463)
T ss_pred ccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHH
Confidence 56777766421 22366789999999999999999999999999999999875
Q ss_pred ----------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048633 77 ----------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRN 104 (130)
Q Consensus 77 ----------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~ 104 (130)
|||++|+||++|+||||++.+.. ..
T Consensus 324 ~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~ 400 (463)
T PLN02774 324 KSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SH 400 (463)
T ss_pred hcCcHHHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CC
Confidence 99999999999999999975421 12
Q ss_pred ccccccCCCCCCCCCHHHHHHcccc
Q 048633 105 FESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 105 ~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
..++|||+|+|.|||+++|.+|++.
T Consensus 401 ~~~lpFG~G~r~C~G~~~A~~e~~~ 425 (463)
T PLN02774 401 NYFFLFGGGTRLCPGKELGIVEIST 425 (463)
T ss_pred ccccCcCCCCCcCCcHHHHHHHHHH
Confidence 3699999999999999999999875
No 16
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.95 E-value=6.3e-28 Score=183.14 Aligned_cols=91 Identities=42% Similarity=0.710 Sum_probs=80.1
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
...+.++++||+|||+++++|++++|++||++|+++++
T Consensus 299 ~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~ 378 (517)
T PLN02687 299 KALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLP 378 (517)
T ss_pred HHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCcccccc
Confidence 55688899999999999999999999999999999987
Q ss_pred ----------------------------cCCCCCCCCCCCCCCCCCCCCCCC----CCCCccccccCCCCCCCCCHHHHH
Q 048633 77 ----------------------------RDESTRDHAHSFMPKRFLGSEVDF----IGRNFESIPFGAGRRICPDLPLDI 124 (130)
Q Consensus 77 ----------------------------~d~~~~~~p~~F~P~R~l~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~A~ 124 (130)
|||++|+||++|+||||++.+... ...+..++|||+|+|.|+|++||.
T Consensus 379 R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~ 458 (517)
T PLN02687 379 RMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGL 458 (517)
T ss_pred ccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHH
Confidence 999999999999999999753211 123457999999999999999999
Q ss_pred Hcccc
Q 048633 125 TMLYP 129 (130)
Q Consensus 125 ~~~~~ 129 (130)
+||++
T Consensus 459 ~e~~~ 463 (517)
T PLN02687 459 RMVTL 463 (517)
T ss_pred HHHHH
Confidence 99875
No 17
>PLN00168 Cytochrome P450; Provisional
Probab=99.95 E-value=6.1e-28 Score=183.28 Aligned_cols=92 Identities=36% Similarity=0.613 Sum_probs=80.7
Q ss_pred HHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------------------------
Q 048633 38 ESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------------------------- 76 (130)
Q Consensus 38 ~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------------------------- 76 (130)
....++++++||+|||+++++|++++|++||++|+|+++
T Consensus 307 i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~ 386 (519)
T PLN00168 307 IVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFV 386 (519)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCccc
Confidence 366789999999999999999999999999999999998
Q ss_pred ------------------------------cCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccccCCCCCCCCCHH
Q 048633 77 ------------------------------RDESTRDHAHSFMPKRFLGSEVD-----FIGRNFESIPFGAGRRICPDLP 121 (130)
Q Consensus 77 ------------------------------~d~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~ 121 (130)
|||++|+||++|+||||++.... ....+..++|||+|+|.|||++
T Consensus 387 ~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~ 466 (519)
T PLN00168 387 LPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLG 466 (519)
T ss_pred CCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHH
Confidence 99999999999999999974211 1122457999999999999999
Q ss_pred HHHHcccc
Q 048633 122 LDITMLYP 129 (130)
Q Consensus 122 ~A~~~~~~ 129 (130)
||.+|++.
T Consensus 467 lA~~e~~~ 474 (519)
T PLN00168 467 IAMLHLEY 474 (519)
T ss_pred HHHHHHHH
Confidence 99999975
No 18
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=1.1e-27 Score=179.26 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhh------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh---------------------
Q 048633 24 IKDLLGYAEEHC------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS--------------------- 76 (130)
Q Consensus 24 ~~dll~~~~~~~------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~--------------------- 76 (130)
.+|+++.++... .+....++++++||+|||+.+++|++++|++||++|+++++
T Consensus 232 ~~d~l~~ll~~~~~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~ 311 (452)
T PLN03141 232 PKDVVDVLLRDGSDELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDY 311 (452)
T ss_pred hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHH
Confidence 357777777542 23466788999999999999999999999999999999976
Q ss_pred ----------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048633 77 ----------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRN 104 (130)
Q Consensus 77 ----------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~ 104 (130)
||+++|+||++|+||||++++. .+
T Consensus 312 ~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~ 387 (452)
T PLN03141 312 MSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NN 387 (452)
T ss_pred hccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CC
Confidence 9999999999999999997532 35
Q ss_pred ccccccCCCCCCCCCHHHHHHcccc
Q 048633 105 FESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 105 ~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
..++|||+|+|.|+|++||.+|+++
T Consensus 388 ~~~~pFG~G~R~C~G~~lA~~el~~ 412 (452)
T PLN03141 388 SSFTPFGGGQRLCPGLDLARLEASI 412 (452)
T ss_pred CCCCCCCCCCCCCChHHHHHHHHHH
Confidence 6899999999999999999999875
No 19
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=7e-28 Score=182.72 Aligned_cols=88 Identities=27% Similarity=0.403 Sum_probs=78.8
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
.+.+.++++||+|||+++++|++++|++||++|+|+++
T Consensus 318 ~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~ 397 (516)
T PLN02290 318 MDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPPATLLPRM 397 (516)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCCcccccee
Confidence 45688999999999999999999999999999999997
Q ss_pred --------------------------cCCCCC-CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 77 --------------------------RDESTR-DHAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 77 --------------------------~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
|||++| +||++|+||||++... ..+..++|||.|+|.|+|+.||++|++.
T Consensus 398 ~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l 474 (516)
T PLN02290 398 AFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKI 474 (516)
T ss_pred ecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHH
Confidence 999999 8999999999995421 2244799999999999999999999874
No 20
>PLN02738 carotene beta-ring hydroxylase
Probab=99.95 E-value=1.2e-27 Score=185.12 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=88.0
Q ss_pred HHHHHHHHHhh-----hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------
Q 048633 25 KDLLGYAEEHC-----RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~-----~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------- 76 (130)
.|+++.+++.. .+..+.++++++||+|||+.+++|++++|++||++|+|+++
T Consensus 374 ~dil~~Ll~~~~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~kLPYL~ 453 (633)
T PLN02738 374 PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKKLKYTT 453 (633)
T ss_pred chHHHHHHHcCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHccCHHHH
Confidence 36777766543 22356789999999999999999999999999999999997
Q ss_pred ---------------------------------------------cCCCCCCCCCCCCCCCCCCCCC--CCCCCCccccc
Q 048633 77 ---------------------------------------------RDESTRDHAHSFMPKRFLGSEV--DFIGRNFESIP 109 (130)
Q Consensus 77 ---------------------------------------------~d~~~~~~p~~F~P~R~l~~~~--~~~~~~~~~~~ 109 (130)
|||++|+||++|+||||+..+. .....+..++|
T Consensus 454 AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vp 533 (633)
T PLN02738 454 RVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLP 533 (633)
T ss_pred HHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeC
Confidence 9999999999999999985321 11223567999
Q ss_pred cCCCCCCCCCHHHHHHcccc
Q 048633 110 FGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 110 Fg~G~r~C~G~~~A~~~~~~ 129 (130)
||.|+|.|+|++||++||+.
T Consensus 534 FG~G~R~CiG~~lA~~El~l 553 (633)
T PLN02738 534 FGGGPRKCVGDMFASFENVV 553 (633)
T ss_pred CCCCCCCCcCHHHHHHHHHH
Confidence 99999999999999999975
No 21
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.95 E-value=7.7e-28 Score=182.56 Aligned_cols=106 Identities=26% Similarity=0.312 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhh---------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHH-------------------
Q 048633 24 IKDLLGYAEEHC---------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKAT------------------- 75 (130)
Q Consensus 24 ~~dll~~~~~~~---------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~------------------- 75 (130)
.+|+++.+++.. .+..+.++++++||+|||+++++|++++|++||++|+|++
T Consensus 270 ~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~ 349 (516)
T PLN03195 270 KHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDS 349 (516)
T ss_pred cccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccccccccccc
Confidence 346777766421 2235678999999999999999999999999999988875
Q ss_pred ----------h-------------------------------------------------------------cCCCCC-C
Q 048633 76 ----------S-------------------------------------------------------------RDESTR-D 83 (130)
Q Consensus 76 ----------~-------------------------------------------------------------~d~~~~-~ 83 (130)
+ |||++| +
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~ 429 (516)
T PLN03195 350 QSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGP 429 (516)
T ss_pred chhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhcc
Confidence 1 999999 9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 84 HAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 84 ~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
||++|+||||++.+......+..++|||+|+|.|+|++||++||+.
T Consensus 430 dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~ 475 (516)
T PLN03195 430 DAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKM 475 (516)
T ss_pred ChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHH
Confidence 9999999999964321122345799999999999999999999974
No 22
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=180.11 Aligned_cols=105 Identities=31% Similarity=0.578 Sum_probs=86.8
Q ss_pred HHHHHHHHHhh----------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------
Q 048633 25 KDLLGYAEEHC----------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------ 76 (130)
Q Consensus 25 ~dll~~~~~~~----------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------ 76 (130)
.|+++.+++.. .+....+.++++||+|||+++++|++++|++||++|+++++
T Consensus 274 ~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~ 353 (514)
T PLN03112 274 MDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLV 353 (514)
T ss_pred chHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhc
Confidence 47777776531 12255688999999999999999999999999999999998
Q ss_pred ----------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCC--C--
Q 048633 77 ----------------------------------------------------RDESTRDHAHSFMPKRFLGSEVD--F-- 100 (130)
Q Consensus 77 ----------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~--~-- 100 (130)
|||++|+||++|+||||..+... .
T Consensus 354 ~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~ 433 (514)
T PLN03112 354 HLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEIS 433 (514)
T ss_pred cCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccc
Confidence 99999999999999998654211 1
Q ss_pred CCCCccccccCCCCCCCCCHHHHHHcccc
Q 048633 101 IGRNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 101 ~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
...+..++|||+|+|.|||++||++|++.
T Consensus 434 ~~~~~~~~pFg~G~R~C~G~~~A~~e~~~ 462 (514)
T PLN03112 434 HGPDFKILPFSAGKRKCPGAPLGVTMVLM 462 (514)
T ss_pred cCCCcceeCCCCCCCCCCcHHHHHHHHHH
Confidence 11245799999999999999999999875
No 23
>PLN02655 ent-kaurene oxidase
Probab=99.95 E-value=2e-27 Score=178.44 Aligned_cols=104 Identities=24% Similarity=0.436 Sum_probs=88.7
Q ss_pred HHHHHHHHHhh-----hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------
Q 048633 25 KDLLGYAEEHC-----RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~-----~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------- 76 (130)
.|+++.++... .+..+.++++++||+|||+++++|++++|+.||++|+++++
T Consensus 245 ~d~l~~ll~~~~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~l~~l~yl~ 324 (466)
T PLN02655 245 DCYLDFLLSEATHLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERVTEEDLPNLPYLN 324 (466)
T ss_pred ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHH
Confidence 46777777543 23366789999999999999999999999999999999987
Q ss_pred ----------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 048633 77 ----------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFESIPF 110 (130)
Q Consensus 77 ----------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~F 110 (130)
|||++|+||++|+||||++.+.. ......++||
T Consensus 325 a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~F 403 (466)
T PLN02655 325 AVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAF 403 (466)
T ss_pred HHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCC
Confidence 99999999999999999975422 1234689999
Q ss_pred CCCCCCCCCHHHHHHcccc
Q 048633 111 GAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 111 g~G~r~C~G~~~A~~~~~~ 129 (130)
|+|+|.|||++||.++++.
T Consensus 404 g~G~r~C~G~~~A~~~~~~ 422 (466)
T PLN02655 404 GAGKRVCAGSLQAMLIACM 422 (466)
T ss_pred CCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999874
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.94 E-value=4.1e-27 Score=179.39 Aligned_cols=91 Identities=22% Similarity=0.387 Sum_probs=80.4
Q ss_pred HhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------------------------------
Q 048633 39 SNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------------------------------ 76 (130)
Q Consensus 39 ~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------------------------------ 76 (130)
...++++++||+|||+++++|++++|++||++|+++++
T Consensus 316 ~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~ 395 (534)
T PLN03018 316 KAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPP 395 (534)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCC
Confidence 56688999999999999999999999999999999987
Q ss_pred ----------------------------cCCCCCCCCCCCCCCCCCCCCCCC-----CCCCccccccCCCCCCCCCHHHH
Q 048633 77 ----------------------------RDESTRDHAHSFMPKRFLGSEVDF-----IGRNFESIPFGAGRRICPDLPLD 123 (130)
Q Consensus 77 ----------------------------~d~~~~~~p~~F~P~R~l~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A 123 (130)
|||++|+||++|+||||++.+... ...+..++|||+|+|.|||++||
T Consensus 396 r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA 475 (534)
T PLN03018 396 HVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVG 475 (534)
T ss_pred cccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHH
Confidence 999999999999999999654211 12346799999999999999999
Q ss_pred HHcccc
Q 048633 124 ITMLYP 129 (130)
Q Consensus 124 ~~~~~~ 129 (130)
.+|++.
T Consensus 476 ~~e~~~ 481 (534)
T PLN03018 476 TIMMVM 481 (534)
T ss_pred HHHHHH
Confidence 999875
No 25
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.94 E-value=3.4e-27 Score=178.77 Aligned_cols=105 Identities=34% Similarity=0.620 Sum_probs=86.8
Q ss_pred HHHHHHHHHhh----------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh------------------
Q 048633 25 KDLLGYAEEHC----------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------ 76 (130)
Q Consensus 25 ~dll~~~~~~~----------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------ 76 (130)
.|+++.+++.. ++....++++++||+|||+++++|++++|++||++|+|+++
T Consensus 267 ~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~ 346 (504)
T PLN00110 267 PDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLP 346 (504)
T ss_pred CChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhh
Confidence 46777666421 12356688999999999999999999999999999999988
Q ss_pred ----------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCC--
Q 048633 77 ----------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIG-- 102 (130)
Q Consensus 77 ----------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~-- 102 (130)
|||++|+||++|+||||+++......
T Consensus 347 ~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~ 426 (504)
T PLN00110 347 KLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPR 426 (504)
T ss_pred cChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccC
Confidence 99999999999999999965321111
Q ss_pred -CCccccccCCCCCCCCCHHHHHHcccc
Q 048633 103 -RNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 103 -~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
....++|||+|+|.|+|++||.+|++.
T Consensus 427 ~~~~~~~pFG~G~R~C~G~~~A~~e~~~ 454 (504)
T PLN00110 427 GNDFELIPFGAGRRICAGTRMGIVLVEY 454 (504)
T ss_pred CCeeeEeCCCCCCCCCCcHHHHHHHHHH
Confidence 134799999999999999999999874
No 26
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.94 E-value=2.9e-27 Score=177.44 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=86.3
Q ss_pred HHHHHHHHHh-----hhhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------
Q 048633 25 KDLLGYAEEH-----CRAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~-----~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------- 76 (130)
.|+++.++.. .++..+.++++++||+|||+++++|++++|++||++|+++++
T Consensus 247 ~d~l~~ll~~~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l 326 (463)
T PLN02196 247 NDLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKM 326 (463)
T ss_pred ccHHHHHHhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcC
Confidence 4677766642 233466789999999999999999999999999999999976
Q ss_pred -------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 048633 77 -------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFES 107 (130)
Q Consensus 77 -------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 107 (130)
|||++|+||++|+||||++.. .+..+
T Consensus 327 ~yl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~ 401 (463)
T PLN02196 327 PLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTF 401 (463)
T ss_pred hHHHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcc
Confidence 999999999999999999632 34689
Q ss_pred cccCCCCCCCCCHHHHHHcccc
Q 048633 108 IPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 108 ~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
+|||.|+|.|+|+++|++|++.
T Consensus 402 lpFG~G~r~C~G~~~A~~e~~~ 423 (463)
T PLN02196 402 MPFGNGTHSCPGNELAKLEISV 423 (463)
T ss_pred cCcCCCCCCCchHHHHHHHHHH
Confidence 9999999999999999999875
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.94 E-value=6.9e-27 Score=176.51 Aligned_cols=105 Identities=25% Similarity=0.339 Sum_probs=87.8
Q ss_pred HHHHHHHHHhh-----hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------
Q 048633 25 KDLLGYAEEHC-----RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~-----~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------- 76 (130)
.|+++.++... .+..+.++++++||+|||+++++|++++|++||++|+++++
T Consensus 261 ~d~l~~ll~~~~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~ 340 (489)
T PLN02936 261 PSVLRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELKYLT 340 (489)
T ss_pred hHHHHHHHhccccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCHHHH
Confidence 56777766532 23356689999999999999999999999999999999998
Q ss_pred ----------------------------------------------cCCCCCCCCCCCCCCCCCCCCCC--CCCCCcccc
Q 048633 77 ----------------------------------------------RDESTRDHAHSFMPKRFLGSEVD--FIGRNFESI 108 (130)
Q Consensus 77 ----------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~ 108 (130)
|||++|+||++|+||||+..+.. ....+..++
T Consensus 341 avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~ 420 (489)
T PLN02936 341 RCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYI 420 (489)
T ss_pred HHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCccee
Confidence 99999999999999999964321 112245799
Q ss_pred ccCCCCCCCCCHHHHHHcccc
Q 048633 109 PFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 109 ~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
|||.|+|.|||++||++|++.
T Consensus 421 pFg~G~R~C~G~~la~~~~~~ 441 (489)
T PLN02936 421 PFSGGPRKCVGDQFALLEAIV 441 (489)
T ss_pred CCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999874
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.94 E-value=1.5e-26 Score=174.28 Aligned_cols=101 Identities=25% Similarity=0.371 Sum_probs=85.6
Q ss_pred HHHHHHHHHhh---------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-------------------
Q 048633 25 KDLLGYAEEHC---------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~---------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~------------------- 76 (130)
.|+++.+++.. .+....++.+++||+|||+++++|++++|++||++|+++++
T Consensus 266 ~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~ 345 (490)
T PLN02302 266 KDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLK 345 (490)
T ss_pred CCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 46676666431 12255688899999999999999999999999999999875
Q ss_pred ------------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048633 77 ------------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIG 102 (130)
Q Consensus 77 ------------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~ 102 (130)
|||++|+||++|+||||++.. .
T Consensus 346 ~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~ 421 (490)
T PLN02302 346 DVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----P 421 (490)
T ss_pred HHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----C
Confidence 999999999999999999643 2
Q ss_pred CCccccccCCCCCCCCCHHHHHHcccc
Q 048633 103 RNFESIPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 103 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
.+..++|||+|+|.|+|++||.+|++.
T Consensus 422 ~~~~~~pFG~G~r~C~G~~lA~~e~~~ 448 (490)
T PLN02302 422 KAGTFLPFGLGSRLCPGNDLAKLEISI 448 (490)
T ss_pred CCCCccCCCCCCcCCCcHHHHHHHHHH
Confidence 356899999999999999999999874
No 29
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=3e-26 Score=167.33 Aligned_cols=93 Identities=28% Similarity=0.466 Sum_probs=82.0
Q ss_pred HHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------------------------
Q 048633 38 ESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------------------------- 76 (130)
Q Consensus 38 ~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------------------------- 76 (130)
.....+.+++||..||+.+..|++++|++||++++.+++
T Consensus 274 ~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~ 353 (486)
T KOG0684|consen 274 IAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSL 353 (486)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhH
Confidence 356688899999999999999999999999999999998
Q ss_pred ---------------------------------cCCCCCCCCCCCCCCCCCCCCCCCC----CCCccccccCCCCCCCCC
Q 048633 77 ---------------------------------RDESTRDHAHSFMPKRFLGSEVDFI----GRNFESIPFGAGRRICPD 119 (130)
Q Consensus 77 ---------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~----~~~~~~~~Fg~G~r~C~G 119 (130)
+||++|++|+.|+|+||++++.... .-++.++|||+|+|.|||
T Consensus 354 ~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpG 433 (486)
T KOG0684|consen 354 MRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPG 433 (486)
T ss_pred HHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCc
Confidence 9999999999999999998765431 123456999999999999
Q ss_pred HHHHHHccccC
Q 048633 120 LPLDITMLYPL 130 (130)
Q Consensus 120 ~~~A~~~~~~~ 130 (130)
++||.+|++++
T Consensus 434 r~FA~~eIk~~ 444 (486)
T KOG0684|consen 434 RSFAYLEIKQF 444 (486)
T ss_pred hHHHHHHHHHH
Confidence 99999999763
No 30
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.2e-26 Score=172.07 Aligned_cols=99 Identities=27% Similarity=0.377 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHhh---------hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh---------------
Q 048633 21 RKKIKDLLGYAEEHC---------RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS--------------- 76 (130)
Q Consensus 21 ~~~~~dll~~~~~~~---------~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~--------------- 76 (130)
....+|+++.++... .+..++++++++||+|||+++++|+++.|++||+.++++++
T Consensus 211 ~~~~~dlls~l~~a~~~~~~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~~~~~~~v~E~L 290 (411)
T COG2124 211 AAPRDDLLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDRPLLEAVVEETL 290 (411)
T ss_pred cCCcccHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcchHHHHHHHHHHH
Confidence 445567777766432 23467799999999999999999999999999999888877
Q ss_pred --------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCC
Q 048633 77 --------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFESIPFGAGRRICP 118 (130)
Q Consensus 77 --------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~ 118 (130)
|||++|++|++|+|+||. ..|+|||+|+|.|+
T Consensus 291 R~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~Cl 360 (411)
T COG2124 291 RLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCL 360 (411)
T ss_pred HhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCcccc
Confidence 999999999999999996 47999999999999
Q ss_pred CHHHHHHcccc
Q 048633 119 DLPLDITMLYP 129 (130)
Q Consensus 119 G~~~A~~~~~~ 129 (130)
|..||++|+.+
T Consensus 361 G~~lA~~E~~~ 371 (411)
T COG2124 361 GAALARLELKV 371 (411)
T ss_pred CHHHHHHHHHH
Confidence 99999999854
No 31
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.93 E-value=6.1e-26 Score=170.81 Aligned_cols=104 Identities=26% Similarity=0.289 Sum_probs=87.6
Q ss_pred HHHHHHHHHhh-----hhHHhHHHHHHHhccCchHHHHHHHHHHHhhChHHHHHHHh-----------------------
Q 048633 25 KDLLGYAEEHC-----RAESNIVKDLFDARNNTTSITTKWAMAELLHNPEALSKATS----------------------- 76 (130)
Q Consensus 25 ~dll~~~~~~~-----~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~----------------------- 76 (130)
+|+++.+++.. .+....+.++++||+|||+.+++|++++|++||++|+++++
T Consensus 250 ~d~l~~ll~~~~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~l 329 (472)
T PLN02987 250 KDMLAALLASDDGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSM 329 (472)
T ss_pred ccHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcC
Confidence 57777776532 23466688999999999999999999999999999999876
Q ss_pred -------------------------------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 048633 77 -------------------------------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFES 107 (130)
Q Consensus 77 -------------------------------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 107 (130)
|||++|++|++|+||||++.... ...+..+
T Consensus 330 pyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~ 408 (472)
T PLN02987 330 PFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVF 408 (472)
T ss_pred hHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcce
Confidence 89999999999999999975422 1234579
Q ss_pred cccCCCCCCCCCHHHHHHcccc
Q 048633 108 IPFGAGRRICPDLPLDITMLYP 129 (130)
Q Consensus 108 ~~Fg~G~r~C~G~~~A~~~~~~ 129 (130)
+|||+|+|.|||++||.+|++.
T Consensus 409 l~FG~G~r~C~G~~lA~~e~~~ 430 (472)
T PLN02987 409 TPFGGGPRLCPGYELARVALSV 430 (472)
T ss_pred ECCCCCCcCCCcHHHHHHHHHH
Confidence 9999999999999999999874
No 32
>PLN02648 allene oxide synthase
Probab=99.81 E-value=1.2e-19 Score=137.03 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=65.5
Q ss_pred HHHhccCchHHHHHHHHHHHhhChH-HHHHHHh-----------------------------------------------
Q 048633 45 LFDARNNTTSITTKWAMAELLHNPE-ALSKATS----------------------------------------------- 76 (130)
Q Consensus 45 l~~ag~~tt~~~l~~~l~~l~~~p~-~~~~l~~----------------------------------------------- 76 (130)
+..++++|++++++|++++|+.||+ +++++++
T Consensus 280 ~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~ 359 (480)
T PLN02648 280 LGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRARE 359 (480)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecC
Confidence 3345666677899999999999995 9999988
Q ss_pred ---------------------------cCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc---------cCCCCCCCCCH
Q 048633 77 ---------------------------RDESTRDHAHSFMPKRFLGSEVDFIGRNFESIP---------FGAGRRICPDL 120 (130)
Q Consensus 77 ---------------------------~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~---------Fg~G~r~C~G~ 120 (130)
|||++|+||++|+|+||+++... ....+++ ||+|+|.|+|+
T Consensus 360 d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~ 436 (480)
T PLN02648 360 DFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGK 436 (480)
T ss_pred CEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccH
Confidence 99999999999999999864321 1123333 36778999999
Q ss_pred HHHHHcccc
Q 048633 121 PLDITMLYP 129 (130)
Q Consensus 121 ~~A~~~~~~ 129 (130)
+||++|++.
T Consensus 437 ~~A~~e~~~ 445 (480)
T PLN02648 437 DFVVLVARL 445 (480)
T ss_pred HHHHHHHHH
Confidence 999999864
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=81.59 E-value=1.2 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 048633 77 RDESTRDHAHSFMPKRFLGSE 97 (130)
Q Consensus 77 ~d~~~~~~p~~F~P~R~l~~~ 97 (130)
+-|..|..--.-||||||.-.
T Consensus 32 rlPK~~dp~~~PDPERWLP~~ 52 (59)
T PF08492_consen 32 RLPKNYDPGKTPDPERWLPKR 52 (59)
T ss_pred CCCCCCCCCCCCCccccCchh
Confidence 556666222234899999743
No 34
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=80.52 E-value=2 Score=23.19 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred HHHHHHHhhChHHHHHHHh
Q 048633 58 KWAMAELLHNPEALSKATS 76 (130)
Q Consensus 58 ~~~l~~l~~~p~~~~~l~~ 76 (130)
.-.+.||..||++.+++.+
T Consensus 3 Q~iV~YLv~nPevl~kl~~ 21 (57)
T PF05952_consen 3 QEIVNYLVQNPEVLEKLKE 21 (57)
T ss_pred HHHHHHHHHChHHHHHHHc
Confidence 3467899999999999987
No 35
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=77.35 E-value=0.6 Score=31.07 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 87 SFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 87 ~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
+|+|++|-.---....++.+.+-|..|+-.|-|.
T Consensus 36 eYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGa 69 (185)
T COG2101 36 EYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGA 69 (185)
T ss_pred ccCHhHCCeeEEEecCCcceEEEEecCcEEEecc
Confidence 6999999432222233456889999999999995
No 36
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=65.58 E-value=1.2 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
-+|+|+||-.---....+....+-|+.|+=.|.|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 37999998543222223455789999999999985
No 37
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=64.39 E-value=2.9 Score=19.28 Aligned_cols=7 Identities=0% Similarity=-0.154 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 048633 57 TKWAMAE 63 (130)
Q Consensus 57 l~~~l~~ 63 (130)
+.+.++.
T Consensus 16 ~vYL~~A 22 (29)
T PRK14759 16 LIYLTYA 22 (29)
T ss_pred HHHHHHH
Confidence 3344443
No 38
>PRK00394 transcription factor; Reviewed
Probab=59.97 E-value=2 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPD 119 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 119 (130)
-+|+|+||-.---....+....+-|..|+=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4799999854322223345578999999999999
No 39
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=57.56 E-value=26 Score=18.20 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHhhChHHHHHHHhcCCCCC-CCCCCCCCC
Q 048633 61 MAELLHNPEALSKATSRDESTR-DHAHSFMPK 91 (130)
Q Consensus 61 l~~l~~~p~~~~~l~~~d~~~~-~~p~~F~P~ 91 (130)
+..|+.-..++...+.|+-.+| ..|.-|+|.
T Consensus 13 L~ll~~~~~~~~e~~r~qgpiFDTRPSPFNPN 44 (52)
T PF08105_consen 13 LGLLALAGSVLTEAHRRQGPIFDTRPSPFNPN 44 (52)
T ss_pred HHHHHhccccccchhhccCCCCCCCCCCCCCC
Confidence 3444445555666666888889 788888886
No 40
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=56.80 E-value=23 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=14.0
Q ss_pred HHHHHHHHHh-hChHHHHHHHh
Q 048633 56 TTKWAMAELL-HNPEALSKATS 76 (130)
Q Consensus 56 ~l~~~l~~l~-~~p~~~~~l~~ 76 (130)
.+...+..++ +||++++.++.
T Consensus 14 qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 14 QLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHHhChhHHHHHHh
Confidence 3444555555 79999988864
No 41
>PLN00062 TATA-box-binding protein; Provisional
Probab=54.38 E-value=2.2 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
-+|+||||-.---....++...+-|+.|+=.|.|.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 47999998442222223345789999999999984
No 42
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=53.71 E-value=18 Score=21.69 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=20.8
Q ss_pred hhChHHHHHHHh-cCCCCC---CCCCCCCCCCCCC
Q 048633 65 LHNPEALSKATS-RDESTR---DHAHSFMPKRFLG 95 (130)
Q Consensus 65 ~~~p~~~~~l~~-~d~~~~---~~p~~F~P~R~l~ 95 (130)
.+||.++++|.+ .+-+-+ =.|+.|||..|-.
T Consensus 40 frNP~i~ekLi~~~~Ide~gTn~p~~i~dP~~~~~ 74 (96)
T PF07818_consen 40 FRNPSILEKLIEFFGIDEYGTNFPKDIFDPHGFPE 74 (96)
T ss_pred cCChHHHHHHHHHcCCCcccCCCChhhcCCCCCCH
Confidence 469999999998 122223 3466788888754
No 43
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=53.10 E-value=6.4 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=9.0
Q ss_pred cccCCCCCCCC
Q 048633 108 IPFGAGRRICP 118 (130)
Q Consensus 108 ~~Fg~G~r~C~ 118 (130)
-+||-|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 47999999884
No 44
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=51.93 E-value=2.9 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPD 119 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 119 (130)
-+|+|+||-.---....+....+-|+.|+=.|.|
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG 62 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG 62 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEe
Confidence 3689999854322222345578899999999998
No 45
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=46.73 E-value=3.5 Score=27.54 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPD 119 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 119 (130)
-+|+|++|-.---....+....+-|+.|+=.|.|
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 4799999844222222334567899999999998
No 46
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=40.72 E-value=6.2 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
-+|+|.||..--.....+.....-|+.|+=.|.|.
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 46999998643222222344567899999999973
No 47
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=40.39 E-value=18 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCCCC
Q 048633 77 RDESTRDHAHSFMPKR 92 (130)
Q Consensus 77 ~d~~~~~~p~~F~P~R 92 (130)
.|+.+|.|...|+|-|
T Consensus 196 ~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 196 EDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCcccccCccccCCCC
Confidence 8999999999999987
No 48
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=36.28 E-value=36 Score=15.89 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.3
Q ss_pred CccccccCCCCCCCC
Q 048633 104 NFESIPFGAGRRICP 118 (130)
Q Consensus 104 ~~~~~~Fg~G~r~C~ 118 (130)
...|+|+.+..|.|.
T Consensus 17 ~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 17 DNTYQPYDGPRRFCR 31 (31)
T ss_pred CCcEeCCCCccccCc
Confidence 457999998888885
No 49
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=36.08 E-value=53 Score=16.31 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHhhChHHHHHH
Q 048633 58 KWAMAELLHNPEALSKA 74 (130)
Q Consensus 58 ~~~l~~l~~~p~~~~~l 74 (130)
.|-++-++++|++|.-+
T Consensus 13 l~gl~~~l~DpdvqrgL 29 (42)
T PF07849_consen 13 LFGLLRALRDPDVQRGL 29 (42)
T ss_pred HHHHHHHHcCHHHHHHH
Confidence 35566778888888765
No 50
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=35.52 E-value=79 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHhccCchHHHHHHHHHHHhhChHHHHHHHh-cCCCCCCCC
Q 048633 46 FDARNNTTSITTKWAMAELLHNPEALSKATS-RDESTRDHA 85 (130)
Q Consensus 46 ~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~-~d~~~~~~p 85 (130)
+-|-.|.....+-+..-.|.+||..|..++. +-++.+.||
T Consensus 365 L~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~~~~Dp 405 (505)
T KOG2154|consen 365 LEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALSLYDDP 405 (505)
T ss_pred ccCCcccchhhHHHHHHHHHhCCchhhhhcccccccCCCCC
Confidence 3444455555556666677788888888876 555555555
No 51
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=35.08 E-value=71 Score=17.76 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q 048633 54 SITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 54 ~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
....+..+--+++|||.+.+++.
T Consensus 20 G~v~~~a~e~iaRqPE~~~~i~~ 42 (66)
T PRK13467 20 GFLMANLFKSAARQPEMIGQLRS 42 (66)
T ss_pred HHHHHHHHHHHHcChhHHHhHHH
Confidence 44556677888999999999874
No 52
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=34.64 E-value=2.7 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 87 SFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 87 ~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
+|+|+||-.---....+....+-|..|+=.|.|.
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 5888887332111122345678899999889884
No 53
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=33.66 E-value=74 Score=17.12 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhChHHHHHHHh
Q 048633 55 ITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 55 ~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
...+..+--+++||+...+++.
T Consensus 11 ~i~~~a~~~iaRqPe~~~~l~~ 32 (58)
T TIGR01260 11 ILGGKFLESAARQPELKPLLRT 32 (58)
T ss_pred HHHHHHHHHHHcChhHHHhHHH
Confidence 3445567788999999888763
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=30 Score=27.84 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 048633 77 RDESTRDHAHSFMPKRFLGSE 97 (130)
Q Consensus 77 ~d~~~~~~p~~F~P~R~l~~~ 97 (130)
.+|+.|...-.=|||||++..
T Consensus 570 k~pknyn~~~tPDPERWLP~r 590 (652)
T KOG2376|consen 570 KLPKNYNPKVTPDPERWLPRR 590 (652)
T ss_pred CCcccCCCCCCCChhhcccch
Confidence 566666222223488888743
No 55
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=32.39 E-value=36 Score=20.07 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHhhChHHHHHHHh
Q 048633 59 WAMAELLHNPEALSKATS 76 (130)
Q Consensus 59 ~~l~~l~~~p~~~~~l~~ 76 (130)
.+++.|+.||++...+..
T Consensus 3 ~lL~lll~~P~l~~~v~~ 20 (125)
T smart00766 3 ELIRLLLQNPELASLVPD 20 (125)
T ss_pred HHHHHHHHCHHHHhhCCC
Confidence 457788999999888854
No 56
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=32.30 E-value=42 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 048633 78 DESTRDHAHSFMPKRFLG 95 (130)
Q Consensus 78 d~~~~~~p~~F~P~R~l~ 95 (130)
....|.+|+.|.++||-+
T Consensus 217 ~~~~~d~~~~~~~~~~~d 234 (258)
T TIGR03764 217 VLARFDDPEEFSLERFRD 234 (258)
T ss_pred HHHhcCCcccCCHHHHHH
Confidence 345567899999999854
No 57
>PRK03636 hypothetical protein; Provisional
Probab=29.92 E-value=47 Score=22.35 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhChHHHHHHH
Q 048633 56 TTKWAMAELLHNPEALSKAT 75 (130)
Q Consensus 56 ~l~~~l~~l~~~p~~~~~l~ 75 (130)
-..|.+.+|.+|+++++++.
T Consensus 25 e~~wiLnyl~~h~~lL~~VH 44 (179)
T PRK03636 25 ECVWILNYLMSHDQLMEKVH 44 (179)
T ss_pred HHHHHHHHHHhCHHHHhhee
Confidence 34689999999999999986
No 58
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=29.46 E-value=1e+02 Score=17.16 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q 048633 54 SITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 54 ~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
.....-.+--+++||+.+.+++.
T Consensus 20 G~~~~~~~e~vaRqPea~~~l~~ 42 (66)
T PRK13466 20 GLLVASYLSSTARQPEMQSKLMA 42 (66)
T ss_pred HHHHHHHHHHHHcChhHHHhHHH
Confidence 34455677788999999999863
No 59
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=27.90 E-value=58 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCC-CCCCCCCCCCCCC-----C-------------CCccccccCCCCCCCCCH
Q 048633 77 RDESTRDHAHSF-MPKRFLGSEVDFI-----G-------------RNFESIPFGAGRRICPDL 120 (130)
Q Consensus 77 ~d~~~~~~p~~F-~P~R~l~~~~~~~-----~-------------~~~~~~~Fg~G~r~C~G~ 120 (130)
+-++-=|-|..| ++++|++...... + ....+...--|||.||.-
T Consensus 245 q~gD~~p~pfSFln~~v~i~~e~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~~gPRYCPSi 307 (679)
T KOG2311|consen 245 QIGDEPPIPFSFLNETVWIEPEDQLPCYLTHTTPRVHEIVRKNLHENPHVKETTIGPRYCPSI 307 (679)
T ss_pred hcCCCCCCceeccCCccccChhccCccccccCcHHHHHHHHhhhccCccccccccCCccCCcH
Confidence 566666889999 9999987542110 0 112334445699999963
No 60
>PRK03057 hypothetical protein; Provisional
Probab=27.45 E-value=51 Score=22.21 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhChHHHHHHH
Q 048633 56 TTKWAMAELLHNPEALSKAT 75 (130)
Q Consensus 56 ~l~~~l~~l~~~p~~~~~l~ 75 (130)
-..|.+.+|..||++++++.
T Consensus 23 e~~wiLnYl~~h~~lL~~VH 42 (180)
T PRK03057 23 DARFVLLYLLQHPHLLENVH 42 (180)
T ss_pred hHHHHHHHHHcCHHHHhhee
Confidence 34699999999999999986
No 61
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=26.84 E-value=1.1e+02 Score=17.81 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhhChHHHHHHHh
Q 048633 53 TSITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 53 t~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
.....+..+--+++|||...+++.
T Consensus 28 ~G~v~~~a~eaiaRqPEa~~~l~~ 51 (81)
T PRK05880 28 DGVAGNALISGVARQPEAQGRLFT 51 (81)
T ss_pred HHHHHHHHHHHHHcChhHHHhHHH
Confidence 355566778889999999999874
No 62
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.34 E-value=1.5e+02 Score=18.07 Aligned_cols=47 Identities=15% Similarity=0.016 Sum_probs=30.6
Q ss_pred HhccCchHHHHHHHHHHHhhChHHHHHHHh--------cCCCCCCCCCCCCCCCC
Q 048633 47 DARNNTTSITTKWAMAELLHNPEALSKATS--------RDESTRDHAHSFMPKRF 93 (130)
Q Consensus 47 ~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~--------~d~~~~~~p~~F~P~R~ 93 (130)
+.|+--++..++-.+...++.|-+.+-+.. .+...+++-....|+.-
T Consensus 20 LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~e~~~~~~g~~~~p~~~ 74 (102)
T PF15176_consen 20 LVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPETEAETYEDGFTENPEVG 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcccccccccccCCCCCcc
Confidence 345555667777778888888888776654 44445555556666654
No 63
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=26.12 E-value=35 Score=19.18 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCC
Q 048633 80 STRDHAHSFMPKRF 93 (130)
Q Consensus 80 ~~~~~p~~F~P~R~ 93 (130)
.--+||..|+||=|
T Consensus 28 ~~s~dp~~fn~~If 41 (69)
T PF11297_consen 28 GGSDDPNVFNPDIF 41 (69)
T ss_pred CCCCCccccCcccc
Confidence 33467888888865
No 64
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=25.77 E-value=31 Score=18.38 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=10.6
Q ss_pred ccCCCCCCCC--CHHHH
Q 048633 109 PFGAGRRICP--DLPLD 123 (130)
Q Consensus 109 ~Fg~G~r~C~--G~~~A 123 (130)
-||-|.|.|. |+.-+
T Consensus 11 ~yGkGsr~C~vCg~~~g 27 (54)
T PTZ00218 11 TYGKGSRQCRVCSNRHG 27 (54)
T ss_pred cCCCCCCeeecCCCcch
Confidence 5899999986 54433
No 65
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=24.91 E-value=1.3e+02 Score=19.53 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhChHHHHHHHh
Q 048633 53 TSITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 53 t~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
=..++-+++-.++.||+++.+|+.
T Consensus 8 w~~ALryv~~~v~~n~~~~~~Ir~ 31 (150)
T PF10454_consen 8 WPAALRYVMKTVAQNPEFLQRIRR 31 (150)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356677888889999999999998
No 66
>PF13993 YccJ: YccJ-like protein
Probab=24.36 E-value=86 Score=17.22 Aligned_cols=30 Identities=33% Similarity=0.157 Sum_probs=21.5
Q ss_pred HhccCchHHHHHHHHHHHhhChHH-HHHHHh
Q 048633 47 DARNNTTSITTKWAMAELLHNPEA-LSKATS 76 (130)
Q Consensus 47 ~ag~~tt~~~l~~~l~~l~~~p~~-~~~l~~ 76 (130)
+|..-.|+.-+.-++++|+++.+. .+++.+
T Consensus 8 WA~~ReTS~EIAeAIFElA~~dE~lAekIWe 38 (69)
T PF13993_consen 8 WANVRETSIEIAEAIFELANNDEVLAEKIWE 38 (69)
T ss_pred HHHHhcCCHHHHHHHHHHhcccHHHHHHHHH
Confidence 455566777788899999998775 445544
No 67
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=23.43 E-value=1.5e+02 Score=17.07 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q 048633 54 SITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 54 ~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
....+-.+--+++|||.+.+++.
T Consensus 28 G~~~~~a~~~iaRqPe~~~~l~~ 50 (78)
T PRK06876 28 GLLGGKFLEGAARQPELIPMLQT 50 (78)
T ss_pred HHHHHHHHHHHHcChHHHHhHHH
Confidence 34455667788999999998864
No 68
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=23.11 E-value=12 Score=21.34 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=5.1
Q ss_pred cCCCCCCCCC
Q 048633 77 RDESTRDHAH 86 (130)
Q Consensus 77 ~d~~~~~~p~ 86 (130)
-||..|+||.
T Consensus 54 IDP~TYEDP~ 63 (75)
T PF14575_consen 54 IDPHTYEDPN 63 (75)
T ss_dssp --GGGSSSHH
T ss_pred cCcccccCHH
Confidence 4666666664
No 69
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=23.09 E-value=1.5e+02 Score=17.06 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q 048633 54 SITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 54 ~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
....+..+--+++|||...+++.
T Consensus 28 G~~~~~~~e~vaRqPe~~~~l~~ 50 (77)
T MTH00222 28 GTVFGNLIIGYARNPSLKQQLFT 50 (77)
T ss_pred HHHHHHHHHHHHcChhhHHhHHH
Confidence 45566677888999999998874
No 70
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=22.85 E-value=1.4e+02 Score=16.95 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q 048633 54 SITTKWAMAELLHNPEALSKATS 76 (130)
Q Consensus 54 ~~~l~~~l~~l~~~p~~~~~l~~ 76 (130)
.......+--+++|||...+++.
T Consensus 26 G~~~~~a~e~iaRqPe~~~~l~~ 48 (74)
T PRK07558 26 GNIFGNYLSGALRNPSAADSQFG 48 (74)
T ss_pred HHHHHHHHHHHHcCchHHHhHHH
Confidence 44556677888999999988863
No 71
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.50 E-value=17 Score=24.23 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCH
Q 048633 86 HSFMPKRFLGSEVDFIGRNFESIPFGAGRRICPDL 120 (130)
Q Consensus 86 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 120 (130)
-+|+| ||-.---....+....+-|+.|+=.|.|-
T Consensus 30 ~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTGa 63 (174)
T cd04517 30 VEYNP-RYPKVTMRLREPRATASVWSSGKITITGA 63 (174)
T ss_pred CEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEcc
Confidence 46888 88432222222344678999999999985
No 72
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=20.15 E-value=71 Score=12.92 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 048633 83 DHAHSFMPK 91 (130)
Q Consensus 83 ~~p~~F~P~ 91 (130)
|++.+|.|.
T Consensus 8 p~A~eFvP~ 16 (18)
T PF07145_consen 8 PNAPEFVPS 16 (18)
T ss_dssp TTSSSS-TT
T ss_pred CCCccccCC
Confidence 677778774
Done!