BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048634
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
VP+D D+ N K A L+ V I + V+ + + G D L +LA S
Sbjct: 96 VPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAA----LAYEQVLAAS 151
Query: 62 AATG--FPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPV 119
AA G P FD+ LLGMGP+GHI SLFP P + E+ + V + DSPKPPP RIT T P
Sbjct: 152 AAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPA 211
Query: 120 INSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
I S + ++V G GK+ AV A+G +P A+ + W LD+DA +KL
Sbjct: 212 IQRSREVWLLVSGPGKADAVAAAIGGADPVS-VPAAGAVGRQNTLWLLDRDAAAKL 266
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
VP+D D+ N K A + L + I NV+A+ A S +D E + +L+ +
Sbjct: 80 VPQDDDERNDKQAREALLDHIGIPPVNVHAM--AASDGEFGDDLEAAAAGYAQ--LLSAN 135
Query: 62 AATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIN 121
+ P FD+ LLGMG +GH+ SLFP ++E E+ V + DSPKPPP RIT T P +
Sbjct: 136 FDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQ 195
Query: 122 SSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
+S + +VV G K+ AV A+G D +P A+ E W +D+ A +KL
Sbjct: 196 NSREVWLVVSGEAKADAVAAAVGGADPVD-IPAAGAVGRERTVWLVDEAAAAKL 248
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
VPK + N A++ L V N++A+ ++ S G D L +LA +
Sbjct: 80 VPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAA----LAYEQLLAAN 135
Query: 62 AATG--FPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPV 119
A G P FD+ LLGMG +GHI SLFP +KE ++ V + DSPKPPP+RIT T P
Sbjct: 136 AEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPA 195
Query: 120 INSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
I S + +VV G K+ AV A+G D +P A E W LD+ A S+L
Sbjct: 196 IQRSREVWLVVSGEAKADAVAAAVGGADPVD-VPAAGAKGIERTVWLLDEAAASQL 250
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
VP D D SN++ + S+ I +GNV+ ++ +L E A E YE ++ T
Sbjct: 84 VPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATD------- 136
Query: 62 AATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIN 121
+FDL +LGMGPDGH+AS+F K+N VTF S P R+T TF +N
Sbjct: 137 ------QFDLAILGMGPDGHVASIFDLETGNKDN--LVTFTDPSGDPKVPRVTLTFRALN 188
Query: 122 SSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDK 169
+S Y+ ++ G K + + L + LP +E+ WF+ K
Sbjct: 189 TSLYVLFLIRGKEKINRLTEILKDTP----LPAYFVRGKEKTVWFVGK 232
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
VP D D SN++ + S+ I +GNV+ ++ +L E A E YE ++ T
Sbjct: 94 VPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATD------- 146
Query: 62 AATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIN 121
+FDL +LG GPDGH+AS+F K+N VTF S P R+T TF +N
Sbjct: 147 ------QFDLAILGXGPDGHVASIFDLETGNKDN--LVTFTDPSGDPKVPRVTLTFRALN 198
Query: 122 SSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDK 169
+S Y+ ++ G K + + L + LP +E+ WF+ K
Sbjct: 199 TSLYVLFLIRGKEKINRLTEILKDTP----LPAYFVRGKEKTVWFVGK 242
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 1 VVPKDHDDSNYKLAYDGFLSQVP------ITTGNVYAINDALSAEG--AAEDYETCLKHL 52
+VP D DSNY +A + L +P T V +A SA+ AE Y L L
Sbjct: 78 MVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASL 137
Query: 53 TKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVT----FIKDSPKP 108
+ A P FD++LLG+G DGH AS+FPG KE + V F ++ KP
Sbjct: 138 LPLKSVG-EAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVSVGFPSETMKP 196
Query: 109 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLD 168
R+T + I + + ++ GA K V L + + + + E ++ LD
Sbjct: 197 KVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLD 256
Query: 169 KDATSKL 175
K+ L
Sbjct: 257 KEIAENL 263
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
V D +SNY A S++ N++ I + AE + H+ +
Sbjct: 72 VAPDDAESNYGEANALLFSKINXPAQNIHRILGENEPQAEAERFAQAXAHVIPTE----- 126
Query: 62 AATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIN 121
G P FD +LLG+G DGH ASLFPG + ++ + P+ R++ T V+
Sbjct: 127 --NGTPVFDWILLGVGADGHTASLFPGQTDYADAN--LSVVASHPESGQLRVSKTAKVLQ 182
Query: 122 SSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEE---FTWFLDKDATSKL 175
++ I+ +V GAGK+ V+ + ++ LP A W+LD DA +K+
Sbjct: 183 AAKRISYLVLGAGKAEIVEQI--HTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI 237
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 1 VVPKDHDDSNYKLAYDGFLSQVP------ITTGNVYAINDALSAEG--AAEDYETCLKHL 52
+VP D DSNY +A + L +P T V +A SA+ AE Y L L
Sbjct: 77 MVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASL 136
Query: 53 TKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVT----FIKDSPKP 108
+ A P FD++LLG+G DGH AS+FPG KE + V F ++ KP
Sbjct: 137 LPLKSVG-EAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVSVGFPSETMKP 195
Query: 109 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLD 168
R+T + I + + ++ GA K V L + + + + E ++ LD
Sbjct: 196 KVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLD 255
Query: 169 KDATSKL 175
K+ L
Sbjct: 256 KEIAENL 262
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 1 VVPKDHDDSNYKLAYDGFLSQVP----ITTGNVYAINDALSAEGA-------AEDYETCL 49
++ +D + SN+ +A L VP I+ A+ + +G A+DYE L
Sbjct: 77 LLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKL 136
Query: 50 KHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPP 109
+ + A P D++LLG G DGH AS+FP + E V+ SP
Sbjct: 137 LNCLPCKQI-NGTAKSVPVVDIVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMS 195
Query: 110 PE--RITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAE 160
P+ R+T + VI + ++ ++ G K+ V+ L + +D LPV L +
Sbjct: 196 PKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESP-TDPLPVSRFLRD 247
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 1 VVPKDHDDSNYKLAYDGFLSQVP----ITTGNVYAINDALSAEGA-------AEDYETCL 49
++ +D + SN+ +A L VP I+ A+ + +G A+DYE L
Sbjct: 78 LLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKL 137
Query: 50 KHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPP 109
+ + A P D++LLG G DGH AS+FP + E V+ SP
Sbjct: 138 LNCLPCKQI-NGTAKSVPVVDIVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMS 196
Query: 110 PE--RITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAE 160
P+ R+T + VI + ++ ++ G K+ V+ L + +D LPV L +
Sbjct: 197 PKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESP-TDPLPVSRFLRD 248
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAE----GAAEDYETCLKHLTKSN 56
+VP +H DSN L + L + + D + A DY LKH
Sbjct: 72 IVPTNHADSNTGLVREYLLKNKAAAAVWIPXVEDGKTETELHPDAVVDY--ALKH----- 124
Query: 57 ILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLK---ENEKWVTFIKDSP-KPPPER 112
+ + D+++LG G DGH AS+FP P + + V + +P P ER
Sbjct: 125 ---------YKQPDVLILGXGNDGHTASIFPKAPQFQTAIDGSAGVALVHTTPVTAPHER 175
Query: 113 ITFTFPVINSSAYIAMVVCGAGKSSAV-QTALGNNQNSDLLPVQMAL 158
I+ T I + ++ + + G K + Q A G N+ P+ + L
Sbjct: 176 ISXTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGENRE---YPISLVL 219
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAIN-DALSAEGAAEDYETCLKHLTKSNILAT 60
+P+DH +S + ++ F + I N + ++ +A+ + + +E +K
Sbjct: 77 LPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIK---------- 126
Query: 61 SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKE-------------NEKWVTFIKDSPK 107
AA G +L + G+GPDGHIA PG L+ N ++ F + K
Sbjct: 127 -AAGGI---ELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARF--FDGELTK 180
Query: 108 PPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFL 167
P +T + + + +++ GA K+ A+ A+ N + V +
Sbjct: 181 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNH-MWTVSAFQQHPRTVFVC 239
Query: 168 DKDATSKL 175
D+DAT +L
Sbjct: 240 DEDATLEL 247
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 64 TGFPK-FDLMLLGMGPDGHIASLFPGHPLLKE--NEKWVTFIKDSPKPPPERITFTFPVI 120
+ FP+ FD+++LG G DGH S FP L+ + + + P RIT + I
Sbjct: 124 SNFPRPFDVVVLGXGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITLSKSAI 183
Query: 121 NSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEE 162
+S I + + G K S + AL ++ + P++ LA+ +
Sbjct: 184 LNSRQIYLHLVGEQKLSVYRQALESD-DVHAXPIRAVLAQRK 224
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 70 DLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKP-----------PPERITFTFP 118
D+ LLG+G +GHI PG K VT + + + P + +T
Sbjct: 127 DIQLLGIGRNGHIGFNEPGTS-FKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQ 185
Query: 119 VINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATS 173
I SS I +++ G K+ AV+ L N + D P + T +D++A S
Sbjct: 186 TILSSKRILLLISGKSKAEAVRKLLEGNISED-FPASALHLHSDVTVLIDREAAS 239
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
+ ++H +S + ++ F S + I N+ +N S +L K
Sbjct: 98 IEENHPESYHSFMWNNFFSHIDIKKENINILNGNAS-------------NLKKECEEYEK 144
Query: 62 AATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENE-KWVT----------FIKDSPKPPP 110
F L + G+GPDGHIA PG L K +T F D K P
Sbjct: 145 KIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPK 204
Query: 111 ERITFTFPVINSSAYIAMVVCGAGKSSAVQTAL 143
+T I S + ++V G K+ A++ A+
Sbjct: 205 NALTVGIGTIMDSQEVLIIVNGHNKARALKHAI 237
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 26/154 (16%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAIN-DALSAEGAAEDYETCLKHLTKSNILAT 60
+PK+H +S Y + F V I N+ +N +A + YE ++
Sbjct: 77 LPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIR---------- 126
Query: 61 SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENE-KWVT----------FIKDSPKPP 109
+ K L + G+G DGHIA P L K +T F D + P
Sbjct: 127 ----SYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVP 182
Query: 110 PERITFTFPVINSSAYIAMVVCGAGKSSAVQTAL 143
+T + + + ++V G+ K+ A+Q A+
Sbjct: 183 KYALTVGVGTLLDAEEVMILVLGSQKALALQAAV 216
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAIN-DALSAEGAAEDYETCLKHLTKSNILAT 60
+PK+H +S Y + F V I N+ +N +A + YE ++
Sbjct: 77 LPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIR---------- 126
Query: 61 SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSP------------KP 108
+ K L + G+G DGHIA P L + T D+ +
Sbjct: 127 ----SYGKIHLFMGGVGNDGHIAFNEPASSLASRT-RIKTLTHDTRVANSRFADNDVNQV 181
Query: 109 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTAL 143
P +T + + + ++V G+ K+ A+Q A+
Sbjct: 182 PKYALTVGVGTLLDAEEVMILVLGSQKALALQAAV 216
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase
(Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043
At 1.88 A Resolution
Length = 226
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 72 MLLGMGPDGHIASLFPGHPLLKENEKWVT--FIKDSPKPPPERITFTFPVINSSAYIAMV 129
++LG G DGH ASLFP L + + + +P P RIT + + + +
Sbjct: 129 VILGXGGDGHTASLFPDSEQLATALETTSAAVVVHAPSVPQARITLSASRLADAGLHVLH 188
Query: 130 VCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWF 166
+ G K + AL + + LP++ L++ T++
Sbjct: 189 ITGNDKRRVLAEALAGD-DVRQLPIRAFLSQPIATYW 224
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 66 FPKFDLMLLGMGPDGHIASLFPG 88
+ K D+ +LG G D HIASLFP
Sbjct: 156 YTKVDIAILGXGSDFHIASLFPN 178
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
Length = 323
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 68 KFDLMLLGMGPDGHIASLFPGHPLLK 93
KFD++++G+GP + A+L+ +LK
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLK 40
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 68 KFDLMLLGMGPDGHIASLFPGHPLLK 93
KFD++++G+GP + A+L+ +LK
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLK 40
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 68 KFDLMLLGMGPDGHIASLFPGHPLLKEN--EKWV 99
KFD++++G GP G++A++ LK EK++
Sbjct: 3 KFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYI 36
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 11 YKLAYDGFLSQVPITTGNVY 30
+KLA DGF+ + P+T G ++
Sbjct: 204 FKLAKDGFIDECPVTDGVIF 223
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 68 KFDLMLLGMGPDGHIASL 85
KFD++++G GP G++A++
Sbjct: 3 KFDVIVIGAGPGGYVAAI 20
>pdb|1WCQ|A Chain A, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|B Chain B, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|C Chain C, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine
Length = 601
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 LATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 90
LA + GFP + + L + PDG + + + G P
Sbjct: 10 LAVNGREGFPNYRIPALTVTPDGDLLASYDGRP 42
>pdb|2BZD|A Chain A, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|B Chain B, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|C Chain C, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase
Length = 601
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 LATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 90
LA + GFP + + L + PDG + + + G P
Sbjct: 10 LAVNGREGFPNYRIPALTVTPDGDLLASYDGRP 42
>pdb|2BER|A Chain A, Y370g Active Site Mutant Of The Sialidase From
Micromonospora Viridifaciens In Complex With
Beta-Neu5ac (Sialic Acid)
Length = 601
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 LATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 90
LA + GFP + + L + PDG + + + G P
Sbjct: 10 LAVNGREGFPNYRIPALTVTPDGDLLASYDGRP 42
>pdb|1W8N|A Chain A, Contribution Of The Active Site Aspartic Acid To
Catalysis In The Bacterial Neuraminidase From
Micromonospora Viridifaciens.
pdb|1W8O|A Chain A, Contribution Of The Active Site Aspartic Acid To
Catalysis In The Bacterial Neuraminidase From
Micromonospora Viridifaciens
Length = 601
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 LATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 90
LA + GFP + + L + PDG + + + G P
Sbjct: 10 LAVNGREGFPNYRIPALTVTPDGDLLASYDGRP 42
>pdb|1EUT|A Chain A, Sialidase, Large 68kd Form, Complexed With Galactose
pdb|1EUU|A Chain A, Sialidase Or Neuraminidase, Large 68kd Form
Length = 605
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 LATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 90
LA + GFP + + L + PDG + + + G P
Sbjct: 14 LAVNGREGFPNYRIPALTVTPDGDLLASYDGRP 46
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 15 YDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLK 50
+DG +VP TG++ I L E AE+ LK
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALK 259
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 15 YDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLK 50
+DG +VP TG++ I L E AE+ LK
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALK 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,583,627
Number of Sequences: 62578
Number of extensions: 222939
Number of successful extensions: 542
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 37
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)