Query 048634
Match_columns 175
No_of_seqs 115 out of 1061
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01198 pgl 6-phosphoglucono 100.0 7.2E-50 1.6E-54 321.6 16.9 166 1-175 66-233 (233)
2 PLN02360 probable 6-phosphoglu 100.0 4.8E-49 1E-53 322.6 17.3 174 1-175 83-261 (268)
3 KOG3147 6-phosphogluconolacton 100.0 2.3E-48 5E-53 308.1 15.6 165 1-175 81-248 (252)
4 PTZ00285 glucosamine-6-phospha 100.0 2.4E-46 5.2E-51 304.4 15.6 158 2-175 77-247 (253)
5 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 3.1E-45 6.7E-50 292.2 16.1 156 1-167 62-219 (219)
6 COG0363 NagB 6-phosphogluconol 100.0 3.8E-45 8.2E-50 294.3 13.7 159 1-175 73-236 (238)
7 PRK09762 galactosamine-6-phosp 100.0 2.8E-43 6.1E-48 283.1 13.2 154 1-169 71-232 (232)
8 TIGR00502 nagB glucosamine-6-p 100.0 5.9E-43 1.3E-47 285.3 15.2 158 2-175 77-247 (259)
9 PRK12358 putative 6-phosphoglu 100.0 9.6E-43 2.1E-47 281.1 13.9 151 5-175 74-237 (239)
10 PF01182 Glucosamine_iso: Gluc 100.0 8.4E-41 1.8E-45 263.1 10.5 136 1-144 62-199 (199)
11 PRK02122 glucosamine-6-phospha 100.0 4.4E-40 9.5E-45 296.3 15.5 158 2-175 103-274 (652)
12 cd01399 GlcN6P_deaminase GlcN6 100.0 5.5E-35 1.2E-39 233.7 14.6 158 2-175 63-232 (232)
13 PRK00443 nagB glucosamine-6-ph 100.0 1.1E-33 2.5E-38 230.2 14.7 158 2-175 77-247 (261)
14 KOG3148 Glucosamine-6-phosphat 100.0 6.1E-32 1.3E-36 207.5 9.1 156 2-174 77-246 (273)
15 cd00458 SugarP_isomerase Sugar 99.9 7.4E-26 1.6E-30 174.0 10.5 110 1-167 60-169 (169)
16 COG2390 DeoR Transcriptional r 95.8 0.08 1.7E-06 44.8 9.3 51 110-174 265-315 (321)
17 PF04198 Sugar-bind: Putative 95.6 0.0092 2E-07 48.7 2.8 94 67-174 143-252 (255)
18 PRK15418 transcriptional regul 93.2 0.11 2.4E-06 43.8 3.9 50 111-174 263-312 (318)
19 TIGR00722 ttdA_fumA_fumB hydro 54.9 21 0.00047 29.6 4.3 17 6-22 188-204 (273)
20 PF00098 zf-CCHC: Zinc knuckle 53.2 9.3 0.0002 18.1 1.1 11 77-87 7-17 (18)
21 PLN02772 guanylate kinase 44.8 27 0.00058 30.6 3.5 97 73-170 68-190 (398)
22 KOG3363 Uncharacterized conser 42.8 17 0.00037 28.0 1.7 22 67-88 110-131 (196)
23 TIGR00696 wecB_tagA_cpsF bacte 36.2 49 0.0011 25.4 3.4 11 68-78 100-110 (177)
24 PF03808 Glyco_tran_WecB: Glyc 34.9 50 0.0011 25.0 3.3 11 68-78 101-111 (172)
25 cd05560 Xcc1710_like Xcc1710_l 33.7 53 0.0012 23.1 3.1 14 68-81 52-65 (109)
26 PRK08230 tartrate dehydratase 32.6 1.2E+02 0.0026 25.5 5.4 18 6-23 198-215 (299)
27 PF08940 DUF1918: Domain of un 29.2 20 0.00044 22.6 0.2 23 65-90 33-55 (58)
28 cd06533 Glyco_transf_WecG_TagA 29.1 70 0.0015 24.2 3.2 11 68-78 99-109 (171)
29 PRK03692 putative UDP-N-acetyl 27.7 77 0.0017 25.7 3.4 11 68-78 157-167 (243)
30 COG0123 AcuC Deacetylases, inc 27.0 1.2E+02 0.0025 26.0 4.5 16 68-83 239-254 (340)
31 COG1646 Predicted phosphate-bi 25.5 64 0.0014 26.2 2.5 15 68-83 41-55 (240)
32 cd05126 Mth938 Mth938 domain. 25.4 91 0.002 22.3 3.1 14 68-81 58-71 (117)
33 cd00248 Mth938-like Mth938-lik 24.7 58 0.0013 22.8 2.0 14 68-81 52-65 (109)
34 TIGR03847 conserved hypothetic 24.5 77 0.0017 24.6 2.7 34 41-83 140-173 (177)
35 PF00850 Hist_deacetyl: Histon 23.4 87 0.0019 26.1 3.1 37 37-84 220-256 (311)
36 PF10078 DUF2316: Uncharacteri 22.3 65 0.0014 22.1 1.7 31 136-168 58-89 (89)
37 COG4367 Uncharacterized protei 22.2 91 0.002 21.5 2.4 34 135-170 56-90 (97)
38 PF04430 DUF498: Protein of un 21.5 61 0.0013 22.6 1.5 13 67-79 52-64 (110)
39 KOG3655 Drebrins and related a 21.2 45 0.00098 29.8 0.9 15 73-88 463-477 (484)
40 COG1922 WecG Teichoic acid bio 20.9 1.2E+02 0.0025 25.0 3.2 11 68-78 161-171 (253)
41 PTZ00346 histone deacetylase; 20.9 2E+02 0.0044 25.5 4.9 16 68-83 268-283 (429)
42 PRK03359 putative electron tra 20.0 1.8E+02 0.0039 23.8 4.2 54 12-84 71-129 (256)
No 1
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=7.2e-50 Score=321.57 Aligned_cols=166 Identities=44% Similarity=0.680 Sum_probs=148.9
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEccccc
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDAL-SAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPD 79 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~-~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~D 79 (175)
|||++|++||++++|++||++++++++|+|+++++. +++++|++|++.|++..+. .+.|.||+++||||+|
T Consensus 66 ~Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~--------~~~p~fDl~lLGmG~D 137 (233)
T TIGR01198 66 YVPLDHADSNTGLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQP--------IVFPVFDLLLLGMGPD 137 (233)
T ss_pred ccCCCCccchHHHHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhcc--------cCCCcccEEEECCcCC
Confidence 799999999999999999999999999999999876 7999999999999886421 1246799999999999
Q ss_pred CcccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHc-CCCCCccccccccc
Q 048634 80 GHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALG-NNQNSDLLPVQMAL 158 (175)
Q Consensus 80 GH~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~-~~~~~~~~Pas~l~ 158 (175)
|||||||||++.+++..+++....++|++|++|||||++.|++||+|+|+++|++|+++++++++ ++.+. .+|++.++
T Consensus 138 GHtASlFPg~~~l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~~~-~~Pas~l~ 216 (233)
T TIGR01198 138 GHTASLFPHTPALQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAEPY-PLPAAGVL 216 (233)
T ss_pred ccceeCCCCChhhccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCCcc-cCCHhHcC
Confidence 99999999998887777776666678999999999999999999999999999999999999998 45544 49999999
Q ss_pred cCCeEEEEechhhhcCC
Q 048634 159 AEEEFTWFLDKDATSKL 175 (175)
Q Consensus 159 ~~~~~~~~~D~~Aa~~l 175 (175)
.|++++||+|++|+++|
T Consensus 217 ~~~~~~~~~D~~Aa~~l 233 (233)
T TIGR01198 217 HSGKTLWLLDYAAARKL 233 (233)
T ss_pred CCCcEEEEEChHhhhcC
Confidence 88999999999999876
No 2
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=4.8e-49 Score=322.63 Aligned_cols=174 Identities=55% Similarity=0.948 Sum_probs=148.5
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
|||++|++||++++|++||++++++++|+|++++..+++++|++|++.|+++++.........++.|+||++|||||+||
T Consensus 83 ~Vp~~~~~SN~~~~r~~Ll~~~~i~~~~i~~~~~~~~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG~DG 162 (268)
T PLN02360 83 VVAKNHADSNYKLAKDGLLSKVPVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMGSDG 162 (268)
T ss_pred cCCCCCcchHHHHHHHHhhccCCCChhhcccCCCCCCHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccCCCC
Confidence 79999999999999999999999999999999987779999999999998864311100001123578999999999999
Q ss_pred cccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHc----CCCCCccccccc
Q 048634 81 HIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALG----NNQNSDLLPVQM 156 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~----~~~~~~~~Pas~ 156 (175)
||||||||++.+++...+++.+.++|++|++|||||++.|++||+|+|+++|++|++++++++. ++++. .+|++.
T Consensus 163 HtASlFPg~~~l~~~~~~v~~~~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~~~-~~Pas~ 241 (268)
T PLN02360 163 HVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPDAP-SLPARM 241 (268)
T ss_pred ceeccCCCCchhhhccceEEeecCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCCcc-cCChhh
Confidence 9999999998777666677666677899999999999999999999999999999999999995 54444 599999
Q ss_pred cccCC-eEEEEechhhhcCC
Q 048634 157 ALAEE-EFTWFLDKDATSKL 175 (175)
Q Consensus 157 l~~~~-~~~~~~D~~Aa~~l 175 (175)
|+.|+ +++||+|++|+++|
T Consensus 242 l~~~~~~~~w~~D~~Aa~~l 261 (268)
T PLN02360 242 VQPTKGKLVWFLDKPAASKL 261 (268)
T ss_pred hcCCCCcEEEEECHHHHhhC
Confidence 98774 99999999999875
No 3
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=308.13 Aligned_cols=165 Identities=57% Similarity=0.945 Sum_probs=152.4
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC--CHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccc
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDAL--SAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGP 78 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~--~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~ 78 (175)
.||.+|++|||+..+++||++++++..|+|++|.+. +++++++.|+++|.+.+.+ ...|.||++|||||+
T Consensus 81 ~Vp~~~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~--------~s~p~FDL~LLG~Gp 152 (252)
T KOG3147|consen 81 VVPLDDPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVAN--------DSFPVFDLLLLGMGP 152 (252)
T ss_pred ccCCCCCcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHhcc--------CCCcceeEEEeccCC
Confidence 489999999999999999999999999999999874 6999999999999988653 126789999999999
Q ss_pred cCcccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCccccccccc
Q 048634 79 DGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMAL 158 (175)
Q Consensus 79 DGH~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas~l~ 158 (175)
||||||||||+..+.++.+||++++++|++|++|||+|+++|++|++++|+++|+.|+++++.+++... +++|++++.
T Consensus 153 DGHtaSLFP~~~~l~e~~~wV~~itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~--~~lPaa~V~ 230 (252)
T KOG3147|consen 153 DGHTASLFPGHPLLNEKLKWVVPITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKE--KKLPAALVN 230 (252)
T ss_pred CCCeeecCCCchhhhcccCEEEEeCCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhccc--ccCCchhee
Confidence 999999999988888989999999999999999999999999999999999999999999999998765 359999996
Q ss_pred -cCCeEEEEechhhhcCC
Q 048634 159 -AEEEFTWFLDKDATSKL 175 (175)
Q Consensus 159 -~~~~~~~~~D~~Aa~~l 175 (175)
..++++||+|++|+++|
T Consensus 231 ~~~~~l~WflD~~A~~~l 248 (252)
T KOG3147|consen 231 PAKGKLVWFLDDDAASKL 248 (252)
T ss_pred ccCCeEEEEEchHHhcCC
Confidence 56799999999999875
No 4
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.4e-46 Score=304.39 Aligned_cols=158 Identities=27% Similarity=0.371 Sum_probs=140.1
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
||.+|++||+++++++||+++++|++|+|++++. .+++++|++|++.|++. ++||++|||||+||
T Consensus 77 Vp~~~~~Sn~~~~~~~l~~~~~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~~--------------~~~Dl~lLG~G~DG 142 (253)
T PTZ00285 77 LPRDHPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRAV--------------GGIDLFLAGIGTDG 142 (253)
T ss_pred CCCCchHHHHHHHHHHHhccCCCCHhhEEcCCCCCcCHHHHHHHHHHHHHHh--------------CCCcEEEeCCCCCC
Confidence 8999999999999999999999999999999876 47889999999999874 47999999999999
Q ss_pred cccccCCCCCCCccCCceEEe------------ccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCC
Q 048634 81 HIASLFPGHPLLKENEKWVTF------------IKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQN 148 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~~------------~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~ 148 (175)
||||||||++. .+..++|.. ..+.|++|++|||||++.|++||+|+|+++|++|+++|+++++++.+
T Consensus 143 H~AslfP~~~~-~~~~~~v~~~~~t~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~~ 221 (253)
T PTZ00285 143 HIAFNEPGSSL-DSRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVT 221 (253)
T ss_pred ceeecCCCCcc-CCceEEEECCHHHHHHHhhhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCCC
Confidence 99999999875 333344332 13357889999999999999999999999999999999999998765
Q ss_pred CccccccccccCCeEEEEechhhhcCC
Q 048634 149 SDLLPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 149 ~~~~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
.. +|++.|+.|++++||+|++|+++|
T Consensus 222 ~~-~Pas~l~~~~~~~~~~D~~Aa~~l 247 (253)
T PTZ00285 222 HM-CPASALQMHPAAVLCLDEDATLEL 247 (253)
T ss_pred Cc-cchHHhccCCCEEEEEcHHHHhhh
Confidence 54 999999999999999999999865
No 5
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=3.1e-45 Score=292.19 Aligned_cols=156 Identities=49% Similarity=0.848 Sum_probs=139.1
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
|||++|++||++++|++||++++++++|+|++++..+++++|++|++.|++.+ ++.++||+++||||+||
T Consensus 62 ~Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~----------~~~~~~Dl~lLGmG~DG 131 (219)
T cd01400 62 CVPPDDPDSNYRLAREALLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALF----------GGVPPFDLVLLGMGPDG 131 (219)
T ss_pred ccCCCCcccHHHHHHHHhhccCCCCHhhEEeCCCCCCHHHHHHHHHHHHHHHh----------cCCCCCCEEEECCcCCC
Confidence 79999999999999999999999999999999988789999999999998753 12468999999999999
Q ss_pred cccccCCCCCCC-ccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCcccccccccc
Q 048634 81 HIASLFPGHPLL-KENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALA 159 (175)
Q Consensus 81 H~AslfP~~~~l-~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas~l~~ 159 (175)
||||||||++.+ .+..++++.+.+++++|++|||||++.|++||+|+|+++|++|+++++++++++.+.+ +|++.++.
T Consensus 132 H~ASlfP~~~~~~~~~~~~v~~~~~~~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~~~~-~Pas~l~~ 210 (219)
T cd01400 132 HTASLFPGHPALLEETDRLVVAVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEE-LPAARVLP 210 (219)
T ss_pred ceeecCCCCcccccccCceEEEEeCCCCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCCCCC-CChhhhcC
Confidence 999999999876 4445567766666788999999999999999999999999999999999999887554 99999987
Q ss_pred C-CeEEEEe
Q 048634 160 E-EEFTWFL 167 (175)
Q Consensus 160 ~-~~~~~~~ 167 (175)
| .+++|++
T Consensus 211 ~~~~~~w~~ 219 (219)
T cd01400 211 RPGEVLWFL 219 (219)
T ss_pred CCCcEEEeC
Confidence 7 6788874
No 6
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=294.32 Aligned_cols=159 Identities=38% Similarity=0.615 Sum_probs=140.0
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHH-HHHHHHHHhhccchhhccccCCCCcccEEEEccccc
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAE-DYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPD 79 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~-~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~D 79 (175)
+||++|++||+++||++||+++.++++|+|.++.+. .+++|+ +|++.|.+. ++||+++||||+|
T Consensus 73 ~vp~~~~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~e~~~~ye~~i~~~--------------~~~Dl~lLG~G~D 137 (238)
T COG0363 73 VVPPDDPESNYGLMRRNLFDHIDIPAEFIHNGDASD-PDAECAARYEAKLPSA--------------GGFDLILLGMGED 137 (238)
T ss_pred ccCCCCchhHHHHHHHHHhccccCcHhhcCCCCccC-hhHHHHHHHHhhcccc--------------CCCCEEEEcccCC
Confidence 589999999999999999999999999988777543 444666 999988653 4799999999999
Q ss_pred CcccccCCCCCCCc----cCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCcccccc
Q 048634 80 GHIASLFPGHPLLK----ENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ 155 (175)
Q Consensus 80 GH~AslfP~~~~l~----~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas 155 (175)
||||||||+++.+. +....+.+..+.|++|.+|||||++.|++||+|+|+++|++|+++++++++++.+.. ||++
T Consensus 138 GHias~fP~~~~l~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~~~-~Pas 216 (238)
T COG0363 138 GHIASLFPGTPALDSATTEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTEL-YPAS 216 (238)
T ss_pred CcccccCCCCcccccccchhhceeeecCCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCCccc-ccHH
Confidence 99999999999554 233445556778999999999999999999999999999999999999999999876 9999
Q ss_pred ccccCCeEEEEechhhhcCC
Q 048634 156 MALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 156 ~l~~~~~~~~~~D~~Aa~~l 175 (175)
.|+.|++++||+|++|+++|
T Consensus 217 ~l~~~~~~~~~~d~~A~~~l 236 (238)
T COG0363 217 ILQLHPNVTWFLDEEAASLL 236 (238)
T ss_pred HHhcCCCeEEEEchHHhhhc
Confidence 99999999999999999875
No 7
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.8e-43 Score=283.14 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=134.1
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
+||++|++||++++|++||++++++++|+|++++..+++++|++|++.|++. ++||+++||||+||
T Consensus 71 ~vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~i~~~--------------~~~Dl~lLGmG~DG 136 (232)
T PRK09762 71 DLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARK--------------GGLDLCVLGLGKNG 136 (232)
T ss_pred cCCCCccHHHHHHHHHHhcCCCCCCHHHEECCCCCcccHHHHHHHHHHHHhc--------------CCCCEEEEccCCCC
Confidence 4799999999999999999999999999999987755588899999999764 58999999999999
Q ss_pred cccccCCCCCCCc--------cCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCccc
Q 048634 81 HIASLFPGHPLLK--------ENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLL 152 (175)
Q Consensus 81 H~AslfP~~~~l~--------~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~ 152 (175)
||||||||+++.. +..+++....+.+++|++|||||++.|++||+|+|+++|++|+++++++++++.+.. +
T Consensus 137 H~A~n~P~~slfp~~~~~~l~~~~~~~~~~~~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~~~~-~ 215 (232)
T PRK09762 137 HLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTA-I 215 (232)
T ss_pred ceecCCCCCCCCCCceeeeccHhhhhhhccCCCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCCCCc-c
Confidence 9998888865432 222343334456788999999999999999999999999999999999999887764 9
Q ss_pred cccccccCCeEEEEech
Q 048634 153 PVQMALAEEEFTWFLDK 169 (175)
Q Consensus 153 Pas~l~~~~~~~~~~D~ 169 (175)
|+++|+.|+++++++|+
T Consensus 216 Pas~l~~h~~~~~~~d~ 232 (232)
T PRK09762 216 PASFLWLHSNFICLIDR 232 (232)
T ss_pred cHHHHhhCCCEEEEecC
Confidence 99999999999999995
No 8
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=5.9e-43 Score=285.34 Aligned_cols=158 Identities=25% Similarity=0.360 Sum_probs=138.8
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
||++|++||++++|++||+++++|++|+|++++. .+++++|++|++.|++. ++||+++||||+||
T Consensus 77 vp~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~--------------~~~Dl~llG~G~DG 142 (259)
T TIGR00502 77 LSEEHPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRYEEKIRSY--------------GGIDLFMGGIGPDG 142 (259)
T ss_pred CCCCchHHHHHHHHHHhcccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHc--------------CCCCEEEEccCCCC
Confidence 9999999999999999999999999999999976 58899999999999764 57999999999999
Q ss_pred cccccCCCCCCCccCCceEEec------------cCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCC
Q 048634 81 HIASLFPGHPLLKENEKWVTFI------------KDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQN 148 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~~~------------~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~ 148 (175)
|||||||+++...+ .+++... .+.+.+|++|||||++.|++||+++++++|++|+++++++++++.+
T Consensus 143 H~As~fP~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~~ 221 (259)
T TIGR00502 143 HIAFNEPGSSLTSR-TRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGVN 221 (259)
T ss_pred ceecCCCCCCCCCc-eEEEEcchhhHHHHhhhhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCCC
Confidence 99999999864332 2333210 1345678899999999999999999999999999999999998877
Q ss_pred CccccccccccCCeEEEEechhhhcCC
Q 048634 149 SDLLPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 149 ~~~~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
.. +|++.++.|++++||+|++|+++|
T Consensus 222 ~~-~Pas~l~~~~~~~~~~d~~Aa~~l 247 (259)
T TIGR00502 222 HM-WTISALQLHKHAIVVCDENATQEL 247 (259)
T ss_pred Cc-cchHHhccCCCEEEEEcHHHHhhh
Confidence 64 999999989999999999999874
No 9
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=9.6e-43 Score=281.15 Aligned_cols=151 Identities=21% Similarity=0.323 Sum_probs=131.7
Q ss_pred CChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccCcccc
Q 048634 5 DHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIAS 84 (175)
Q Consensus 5 ~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DGH~As 84 (175)
++.+||++++|++||++++||++|+|++++ +++++|++.|++. ++||++|||||+||||||
T Consensus 74 ~~~~s~~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~y~~~i~~~--------------~~~Dl~lLG~G~DGH~As 134 (239)
T PRK12358 74 EGEGVTITNLRNLFFTPAGIKEENIHKLTI-----DNYREHDQKLARD--------------GGLDLVVLGLGADGHFCG 134 (239)
T ss_pred cccccHHHHHHHHhcCcCCCCHHHeeCCCH-----HHHHHHHHHHHhc--------------CCCCEEEEccCCCCceee
Confidence 445689999999999999999999999884 2589999999763 689999999999999999
Q ss_pred cCCCCCCCccCCceEEec-------------cCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCcc
Q 048634 85 LFPGHPLLKENEKWVTFI-------------KDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDL 151 (175)
Q Consensus 85 lfP~~~~l~~~~~~v~~~-------------~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~ 151 (175)
||||++.+.+..+++... .++|++|++|||||++.|++||+|+|+++|++|+++++++++++.+.+
T Consensus 135 ~fPg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~~~~- 213 (239)
T PRK12358 135 NLPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVTED- 213 (239)
T ss_pred cCCCCCcCCCceEEEECcHHHHHHhhhhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCCCCC-
Confidence 999987665544444322 136788999999999999999999999999999999999999888654
Q ss_pred ccccccccCCeEEEEechhhhcCC
Q 048634 152 LPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 152 ~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
+|+++++.|++++||+|++|+++|
T Consensus 214 ~Pas~l~~h~~~~~~~D~~aa~~l 237 (239)
T PRK12358 214 VPASILQLHPNLTVILDEAAAAEL 237 (239)
T ss_pred cCcHHhccCCCEEEEECHHHHhhc
Confidence 999999999999999999999875
No 10
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=8.4e-41 Score=263.14 Aligned_cols=136 Identities=51% Similarity=0.837 Sum_probs=115.3
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCC-CCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEccccc
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAIND-ALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPD 79 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~-~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~D 79 (175)
|||++|++||+++++++||++++||++|+|++++ ..+++++|++|++.|++..+.. +.|.||+++||||+|
T Consensus 62 ~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~--------~~p~~Dl~lLG~G~D 133 (199)
T PF01182_consen 62 VVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEA--------GFPGFDLVLLGMGED 133 (199)
T ss_dssp SSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSE--------ECESBSEEEEE--TT
T ss_pred ccCCCCCccHHHHHHHHhhccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhcccc--------CCCceeEEEeccccC
Confidence 6899999999999999999999999999999997 4799999999999999874310 135699999999999
Q ss_pred CcccccCCCCCCCc-cCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHc
Q 048634 80 GHIASLFPGHPLLK-ENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALG 144 (175)
Q Consensus 80 GH~AslfP~~~~l~-~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~ 144 (175)
|||||||||++.+. +..+++..+.++|++|++|||||++.|++||+|+|+++|++|+++|+++++
T Consensus 134 GH~aslfPg~~~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 134 GHTASLFPGSPALLEESERWVVAVTDSPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp S-BTTB-TTCHTTHHHHSSSSEEEECCTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred CCeeccCCCCccccccccceEEEecCCCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 99999999998854 333466667778999999999999999999999999999999999999984
No 11
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=4.4e-40 Score=296.32 Aligned_cols=158 Identities=22% Similarity=0.321 Sum_probs=139.5
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC---CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccc
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA---LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGP 78 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~---~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~ 78 (175)
||++|++||+++|+++||++++||++|+|.+++. .+++++|++|++.|++. ++||++|||||+
T Consensus 103 vp~d~~~Sn~~~~re~L~~~i~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~~--------------gg~DlvLLGiG~ 168 (652)
T PRK02122 103 MQPDSLQSYHRFMKENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEAA--------------GGIDFQLLGIGR 168 (652)
T ss_pred CCCCcHHHHHHHHHHHhhccCCCCHHHeecCCCccCcCCHHHHHHHHHHHHHhh--------------CCCcEEEeCCCC
Confidence 8999999999999999999999999999999875 37889999999999874 579999999999
Q ss_pred cCcccccCCCCCCCccCCceEEe-----------ccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCC
Q 048634 79 DGHIASLFPGHPLLKENEKWVTF-----------IKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ 147 (175)
Q Consensus 79 DGH~AslfP~~~~l~~~~~~v~~-----------~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~ 147 (175)
||||||||||++..+. .+.+.. +...+.+|++|||||++.|++||+|+|+++|++|+++++++++++.
T Consensus 169 DGHiAsnfPgs~~~s~-tr~v~l~~~tr~~aa~~f~~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~ 247 (652)
T PRK02122 169 TGHIGFNEPGSGRNSR-TRLVTLDHITRRDAASDFFGEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEI 247 (652)
T ss_pred CCceeccCCCCccccc-ceEEEccchhhhhhccccCCCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCC
Confidence 9999999999875332 233211 1245788999999999999999999999999999999999999887
Q ss_pred CCccccccccccCCeEEEEechhhhcCC
Q 048634 148 NSDLLPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 148 ~~~~~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
+.. +|++.|+.|++++||+|++||++|
T Consensus 248 ~~~-~PAs~Lq~h~~~~~~lD~~AA~~L 274 (652)
T PRK02122 248 SDE-VPASYLQEHPNATFVLDLAAASEL 274 (652)
T ss_pred CCc-cchHHhccCCCEEEEEcHHHhhhc
Confidence 664 999999999999999999999875
No 12
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=5.5e-35 Score=233.66 Aligned_cols=158 Identities=27% Similarity=0.412 Sum_probs=136.5
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
||.+|++||++++++.|+++++++..|+|.++++ .++..+++.|++.|+.. ++||+++||||+||
T Consensus 63 v~~~~~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~~--------------~~~Dl~llGiG~dg 128 (232)
T cd01399 63 LPPDHPQSYHYFMRENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAEA--------------GGIDLQLLGIGENG 128 (232)
T ss_pred CCCCcchhHHHHHHHHhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHc--------------CCCCEEEECCCCCc
Confidence 8899999999999999999999999999999865 46788899999999763 57999999999999
Q ss_pred cccccCCCCCCCccCCceEE-----------eccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCC
Q 048634 81 HIASLFPGHPLLKENEKWVT-----------FIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNS 149 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~-----------~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~ 149 (175)
|+|||||++..+.+.. ... ++...+..|.+|||||++.|+++++++++++|++|+++++.++.++.+.
T Consensus 129 h~as~~p~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~~~ 207 (232)
T cd01399 129 HIGFNEPGSSLDSRTR-VVTLDESTRQANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVTE 207 (232)
T ss_pred eeeecCCCCCCCCceE-EEECCHHhHHHHhhhcCCcCCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCCCC
Confidence 9999999986653321 111 1112267789999999999999999999999999999999999998766
Q ss_pred ccccccccccCCeEEEEechhhhcCC
Q 048634 150 DLLPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 150 ~~~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
+ +|++.++.|++++||+|++||++|
T Consensus 208 ~-~P~~~l~~~~~~~~~~d~~aa~~~ 232 (232)
T cd01399 208 E-CPASILQLHPNVTVILDEAAASEL 232 (232)
T ss_pred C-cchHHHhhCCCeEEEEcHHHhccC
Confidence 4 999999989999999999999875
No 13
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=1.1e-33 Score=230.22 Aligned_cols=158 Identities=28% Similarity=0.401 Sum_probs=135.6
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
||.+|++||+.++++.|+++++++..++|.+++. .++..++..|++.|+.. ++||++|||||+||
T Consensus 77 v~~~~~~s~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~--------------~~~Dl~llGiG~dg 142 (261)
T PRK00443 77 LPADHPESYRYFMRENFFDHVDIPPENINLLNGNAPDPEAECRRYEEKIKSA--------------GGIDLQILGIGENG 142 (261)
T ss_pred CCCCChHHHHHHHHHHHhccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHHc--------------CCCCEEEEccCCCC
Confidence 8999999999999999999999999999999765 57888899999999763 57999999999999
Q ss_pred cccccCCCCCCCccCCceEE-----------ec-cCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCC
Q 048634 81 HIASLFPGHPLLKENEKWVT-----------FI-KDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQN 148 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~-----------~~-~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~ 148 (175)
|+|||||++....+. ..+. ++ .+.+..|.+|||||++.|++|++++++++|++|+++++.+|.+..+
T Consensus 143 h~aslfp~~~~~~~~-~~~~l~~~~~~~~~~~~d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~~ 221 (261)
T PRK00443 143 HIAFNEPGSSFASRT-RIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVN 221 (261)
T ss_pred cccccCCCCCCCCCe-EEEEccHhhHHHHHhhcCCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCCC
Confidence 999999997643221 1111 01 1235678899999999999999999999999999999999998876
Q ss_pred CccccccccccCCeEEEEechhhhcCC
Q 048634 149 SDLLPVQMALAEEEFTWFLDKDATSKL 175 (175)
Q Consensus 149 ~~~~Pas~l~~~~~~~~~~D~~Aa~~l 175 (175)
.+ +|++.++.|++++||+|++|++.|
T Consensus 222 ~~-~Pa~~l~~~~~~~~~~d~~aa~~l 247 (261)
T PRK00443 222 HM-WPASILQLHPKATLVLDEAAASEL 247 (261)
T ss_pred CC-cchHHHhhCCCEEEEEcHHHHhHH
Confidence 64 999999989999999999999864
No 14
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.1e-32 Score=207.46 Aligned_cols=156 Identities=24% Similarity=0.419 Sum_probs=141.1
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
+|.||++|.-.+|+++||+|++|.++|+|.+++. .|.+++|++||.+|++. +++|+-+-|||+||
T Consensus 77 lprdh~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kikea--------------ggidlfvggigpdg 142 (273)
T KOG3148|consen 77 LPRDHPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKEA--------------GGIDLFVGGIGPDG 142 (273)
T ss_pred CCCCChhHHHHHHHHhhhhhcccCcccceeecCchHHHHHHHHHHHHHHHhc--------------CCeEEEeeccCCCC
Confidence 5899999999999999999999999999999997 58999999999999874 68999999999999
Q ss_pred cccccCCCCCCCccCC-------------ceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCC
Q 048634 81 HIASLFPGHPLLKENE-------------KWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ 147 (175)
Q Consensus 81 H~AslfP~~~~l~~~~-------------~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~ 147 (175)
|+|+|+||+++.+.+. +++ -.+-.++|++.+|+|....+.||.|.++++|+.|+-++-++++...
T Consensus 143 hiafnepgsslvsrtrvktla~dti~anarff--dgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegv 220 (273)
T KOG3148|consen 143 HIAFNEPGSSLVSRTRVKTLAMDTILANARFF--DGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV 220 (273)
T ss_pred ceeeCCCcchhhhhhhHHHHhHHHHHhhceec--CCccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcc
Confidence 9999999998765421 222 2566799999999999999999999999999999999999999998
Q ss_pred CCccccccccccCCeEEEEechhhhcC
Q 048634 148 NSDLLPVQMALAEEEFTWFLDKDATSK 174 (175)
Q Consensus 148 ~~~~~Pas~l~~~~~~~~~~D~~Aa~~ 174 (175)
+.. |.+|..|.|++.+++||++|.-+
T Consensus 221 nhm-wtvsafqqh~~t~ficdedatle 246 (273)
T KOG3148|consen 221 NHM-WTVSAFQQHPRTTFICDEDATLE 246 (273)
T ss_pred cce-eehhhHhhCCceEEEecCCceeE
Confidence 875 99999999999999999998643
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=99.93 E-value=7.4e-26 Score=173.97 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=97.0
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634 1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG 80 (175)
Q Consensus 1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG 80 (175)
|||.+|++||+++++++|++++++|++|+|++++..++++++.+|++.+.+. .++||++|||||
T Consensus 60 ~v~~~~~~Sn~~~~~~~ll~~~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~-------------~~~~Dl~lLG~G--- 123 (169)
T cd00458 60 YVPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIEKACEKYEREILDQ-------------VDAIDLAVDGAG--- 123 (169)
T ss_pred cCCCCCchHHHHHHHHHhhccCCCCHHHeecCCCCCCcHHHHHHHHHHHHhh-------------CCCCCEEEECcC---
Confidence 7999999999999999999999999999999998766666666776655432 257999999999
Q ss_pred cccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCccccccccccC
Q 048634 81 HIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAE 160 (175)
Q Consensus 81 H~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas~l~~~ 160 (175)
++||+++|+++|++|+++|+++++++++.. +|++.++.|
T Consensus 124 ----------------------------------------~~a~~i~~~~~G~~Ka~~l~~~~~~~~~~~-~Pas~l~~~ 162 (169)
T cd00458 124 ----------------------------------------YRAGTVIVLVDGRKKVDYLCQNTEPGVIEN-GIFADIRGK 162 (169)
T ss_pred ----------------------------------------ccccEEEEEecChhHHHHHHHHhcCCCCCc-CCHHHhccC
Confidence 889999999999999999999999877654 999999999
Q ss_pred CeEEEEe
Q 048634 161 EEFTWFL 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
++++||+
T Consensus 163 ~~~~~~~ 169 (169)
T cd00458 163 EKDIVIV 169 (169)
T ss_pred CCeEEeC
Confidence 9999985
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.85 E-value=0.08 Score=44.79 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=42.6
Q ss_pred CceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCccccccccccCCeEEEEechhhhcC
Q 048634 110 PERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSK 174 (175)
Q Consensus 110 ~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~ 174 (175)
..-|++++..|.++++++.++-|++|++++..+|.+.- --++++|+.+|..
T Consensus 265 ~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~--------------~n~LITDe~tA~~ 315 (321)
T COG2390 265 DRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGY--------------INVLITDEATAEA 315 (321)
T ss_pred CceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCCC--------------CCEEEeCHHHHHH
Confidence 34679999999999999999999999999999998753 2345778887764
No 17
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=95.64 E-value=0.0092 Score=48.70 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=58.5
Q ss_pred CcccEEEEcccccCcccccCCCCCC-------CccCC-------ceEEeccC--CCCCCCceEEeChHHHhccCceEEEE
Q 048634 67 PKFDLMLLGMGPDGHIASLFPGHPL-------LKENE-------KWVTFIKD--SPKPPPERITFTFPVINSSAYIAMVV 130 (175)
Q Consensus 67 ~~~Dl~lLGmG~DGH~AslfP~~~~-------l~~~~-------~~v~~~~~--~~~~p~~riTlt~~~i~~ar~v~~lv 130 (175)
...|++++|+|.=...++++-..-. +.+.. +++..-.. ......+.|++++..|.+.++++.++
T Consensus 143 ~~~dial~giG~~~~~~~~~~~~~~~~~~~~~l~~~gAVGdi~~~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va 222 (255)
T PF04198_consen 143 RKADIALVGIGSPSSDSTLYRSGYLSEEEIEELREKGAVGDICGRFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVA 222 (255)
T ss_dssp CT-SEEEEEEEEHHHHHHHCHHTTSCHHHHHHHHHTTEEEEETTEEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE
T ss_pred HhCCEEEEecCCCCCcchHHHhCCCCHHHHHHHHHCCcEEEhhchhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEc
Confidence 4689999999987776655532111 11110 11110000 00112457899999999999999999
Q ss_pred cCCCHHHHHHHHHcCCCCCccccccccccCCeEEEEechhhhcC
Q 048634 131 CGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSK 174 (175)
Q Consensus 131 ~G~~K~~~l~~~l~~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~ 174 (175)
.|..|.+++..+|.+.-- -++++|++.|..
T Consensus 223 ~G~~K~~aI~aALr~g~i--------------~~LItDe~tA~~ 252 (255)
T PF04198_consen 223 GGEEKAEAILAALRGGYI--------------NVLITDESTARA 252 (255)
T ss_dssp -SGGGHHHHHHHHHTTST--------------SEEEEEHHHHHH
T ss_pred CchhhHHHHHHHHhcCCC--------------CEEEECHHHHHH
Confidence 999999999999998531 245788888764
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=93.17 E-value=0.11 Score=43.78 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=42.6
Q ss_pred ceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCccccccccccCCeEEEEechhhhcC
Q 048634 111 ERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSK 174 (175)
Q Consensus 111 ~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~ 174 (175)
..|++++..|.+.++++.++.|.+|++++..+|.+.-- -++++|+++|..
T Consensus 263 r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg~i--------------~~LITDe~tA~~ 312 (318)
T PRK15418 263 ELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGGYI--------------NALVTDEKTARA 312 (318)
T ss_pred ceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcCCC--------------CEEEECHHHHHH
Confidence 46799999999999999999999999999999998531 245889888865
No 19
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=54.88 E-value=21 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHhcCCC
Q 048634 6 HDDSNYKLAYDGFLSQV 22 (175)
Q Consensus 6 ~~~Sn~~~~~~~ll~~~ 22 (175)
..+....++|+.|+.++
T Consensus 188 t~d~aa~LaK~Allr~i 204 (273)
T TIGR00722 188 SFETAAKLAKKALLRPI 204 (273)
T ss_pred CHHHHHHHHHHHhhhhh
Confidence 45678899999999865
No 20
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=53.16 E-value=9.3 Score=18.11 Aligned_cols=11 Identities=55% Similarity=0.818 Sum_probs=9.2
Q ss_pred cccCcccccCC
Q 048634 77 GPDGHIASLFP 87 (175)
Q Consensus 77 G~DGH~AslfP 87 (175)
|.-||++...|
T Consensus 7 ~~~GH~~~~Cp 17 (18)
T PF00098_consen 7 GEPGHIARDCP 17 (18)
T ss_dssp SCSSSCGCTSS
T ss_pred CCcCcccccCc
Confidence 78899998776
No 21
>PLN02772 guanylate kinase
Probab=44.77 E-value=27 Score=30.59 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=49.7
Q ss_pred EEcccc---cCcccccCCCCCCC-------ccCCceEEeccCCCCCCCceEEeChH-------HHhccCceEEEE--cCC
Q 048634 73 LLGMGP---DGHIASLFPGHPLL-------KENEKWVTFIKDSPKPPPERITFTFP-------VINSSAYIAMVV--CGA 133 (175)
Q Consensus 73 lLGmG~---DGH~AslfP~~~~l-------~~~~~~v~~~~~~~~~p~~riTlt~~-------~i~~ar~v~~lv--~G~ 133 (175)
++|-+| |||+|...-+...| .+...|+.-+ +.|....++=.++=. .....+++++++ +|.
T Consensus 68 V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~-~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGv 146 (398)
T PLN02772 68 VLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV-DTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGV 146 (398)
T ss_pred ccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc-CCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCC
Confidence 455543 78888876554332 1223466543 445444443333322 233344444442 567
Q ss_pred CHHHHHHHHHcCCCCCcccccccccc-------CCeEEEEechh
Q 048634 134 GKSSAVQTALGNNQNSDLLPVQMALA-------EEEFTWFLDKD 170 (175)
Q Consensus 134 ~K~~~l~~~l~~~~~~~~~Pas~l~~-------~~~~~~~~D~~ 170 (175)
+|..+++++++..+..-.+.++.-.. ++.-++|++.+
T Consensus 147 GKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~e 190 (398)
T PLN02772 147 GKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERS 190 (398)
T ss_pred CHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHH
Confidence 79999999887543211244444422 12237777754
No 22
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=42.78 E-value=17 Score=27.98 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=18.2
Q ss_pred CcccEEEEcccccCcccccCCC
Q 048634 67 PKFDLMLLGMGPDGHIASLFPG 88 (175)
Q Consensus 67 ~~~Dl~lLGmG~DGH~AslfP~ 88 (175)
|.+|+.|+|+|.+-|.--+=|.
T Consensus 110 PkidlLIvG~Gd~~~p~~v~~~ 131 (196)
T KOG3363|consen 110 PKIDLLIVGCGDKKHPDKVRPS 131 (196)
T ss_pred CCccEEEEecCCcCCchhcCHH
Confidence 6899999999999998655554
No 23
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.23 E-value=49 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=9.8
Q ss_pred cccEEEEcccc
Q 048634 68 KFDLMLLGMGP 78 (175)
Q Consensus 68 ~~Dl~lLGmG~ 78 (175)
+.|++++|||.
T Consensus 100 ~~dil~VglG~ 110 (177)
T TIGR00696 100 GAGIVFVGLGC 110 (177)
T ss_pred CCCEEEEEcCC
Confidence 57999999995
No 24
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.89 E-value=50 Score=25.01 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=9.8
Q ss_pred cccEEEEcccc
Q 048634 68 KFDLMLLGMGP 78 (175)
Q Consensus 68 ~~Dl~lLGmG~ 78 (175)
+.|++++|||.
T Consensus 101 ~pdiv~vglG~ 111 (172)
T PF03808_consen 101 GPDIVFVGLGA 111 (172)
T ss_pred CCCEEEEECCC
Confidence 57999999995
No 25
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=33.73 E-value=53 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=12.4
Q ss_pred cccEEEEcccccCc
Q 048634 68 KFDLMLLGMGPDGH 81 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH 81 (175)
.+|++++|.|..++
T Consensus 52 ~peiliiGTG~~~~ 65 (109)
T cd05560 52 QPEVILLGTGERQR 65 (109)
T ss_pred CCCEEEEecCCCCC
Confidence 36999999999887
No 26
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=32.65 E-value=1.2e+02 Score=25.52 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHhcCCCC
Q 048634 6 HDDSNYKLAYDGFLSQVP 23 (175)
Q Consensus 6 ~~~Sn~~~~~~~ll~~~~ 23 (175)
..+....++|+.|+.++.
T Consensus 198 t~d~aa~LaK~Allr~i~ 215 (299)
T PRK08230 198 SVETAAVLSKKAILRPIG 215 (299)
T ss_pred CHHHHHHHHHHHhccccc
Confidence 457788999999998664
No 27
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=29.16 E-value=20 Score=22.60 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=12.8
Q ss_pred CCCcccEEEEcccccCcccccCCCCC
Q 048634 65 GFPKFDLMLLGMGPDGHIASLFPGHP 90 (175)
Q Consensus 65 ~~~~~Dl~lLGmG~DGH~AslfP~~~ 90 (175)
+.|++.+=+. .|||.+..|||.+
T Consensus 33 G~PPY~VRw~---D~Ghe~lv~PGPD 55 (58)
T PF08940_consen 33 GSPPYLVRWD---DTGHESLVFPGPD 55 (58)
T ss_dssp S-S-EEEEET---TTTEEEEE---SS
T ss_pred CCCCEEEEec---CCCcEEEEeCCCC
Confidence 4467777653 4599999999964
No 28
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.09 E-value=70 Score=24.17 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=9.8
Q ss_pred cccEEEEcccc
Q 048634 68 KFDLMLLGMGP 78 (175)
Q Consensus 68 ~~Dl~lLGmG~ 78 (175)
+.|++++|||.
T Consensus 99 ~pdiv~vglG~ 109 (171)
T cd06533 99 GADILFVGLGA 109 (171)
T ss_pred CCCEEEEECCC
Confidence 57999999995
No 29
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=27.74 E-value=77 Score=25.70 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=9.8
Q ss_pred cccEEEEcccc
Q 048634 68 KFDLMLLGMGP 78 (175)
Q Consensus 68 ~~Dl~lLGmG~ 78 (175)
+.|++++|||.
T Consensus 157 ~~dil~VglG~ 167 (243)
T PRK03692 157 GAKIVTVAMGS 167 (243)
T ss_pred CCCEEEEECCC
Confidence 68999999994
No 30
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.02 E-value=1.2e+02 Score=26.01 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=14.4
Q ss_pred cccEEEEcccccCccc
Q 048634 68 KFDLMLLGMGPDGHIA 83 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH~A 83 (175)
.+|++++-.|-|+|-.
T Consensus 239 ~PdlvivsaG~D~h~~ 254 (340)
T COG0123 239 KPDLVIVSAGFDAHRG 254 (340)
T ss_pred CCCEEEEecCcccCCC
Confidence 5799999999999976
No 31
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=25.54 E-value=64 Score=26.24 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.5
Q ss_pred cccEEEEcccccCccc
Q 048634 68 KFDLMLLGMGPDGHIA 83 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH~A 83 (175)
+=|.+++| |.||++-
T Consensus 41 GTDaImIG-GS~gvt~ 55 (240)
T COG1646 41 GTDAIMIG-GSDGVTE 55 (240)
T ss_pred CCCEEEEC-CcccccH
Confidence 67999999 9999994
No 32
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.43 E-value=91 Score=22.29 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=11.9
Q ss_pred cccEEEEcccccCc
Q 048634 68 KFDLMLLGMGPDGH 81 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH 81 (175)
.++++|+|.|..|+
T Consensus 58 ~peivliGTG~~~~ 71 (117)
T cd05126 58 GVEVIVIGTGQSGA 71 (117)
T ss_pred CCCEEEEcCCCCcc
Confidence 47899999998765
No 33
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.74 E-value=58 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=12.4
Q ss_pred cccEEEEcccccCc
Q 048634 68 KFDLMLLGMGPDGH 81 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH 81 (175)
.+|++++|.|..++
T Consensus 52 ~peiliiGTG~~~~ 65 (109)
T cd00248 52 RPDILLIGTGAEIA 65 (109)
T ss_pred CCCEEEEcCCCCCC
Confidence 38999999999885
No 34
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=24.48 E-value=77 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccCccc
Q 048634 41 AAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIA 83 (175)
Q Consensus 41 ~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DGH~A 83 (175)
.++++.+..+++.+++ .|+-=+|=.=|+++||+|
T Consensus 140 ~ARafa~Ra~~VVaAG---------RP~CPlCg~PldP~GH~C 173 (177)
T TIGR03847 140 QARAFAKRARRVVAAG---------RPPCPLCGRPIDPDGHIC 173 (177)
T ss_pred HHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCccC
Confidence 5688888888776542 232234555679999998
No 35
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=23.42 E-value=87 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccCcccc
Q 048634 37 SAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIAS 84 (175)
Q Consensus 37 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DGH~As 84 (175)
+.++-...+++.|..++.. -.+|++++..|-|+|-.-
T Consensus 220 ~d~~y~~~~~~~l~~~~~~-----------f~P~~ivvsaG~D~~~~D 256 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEE-----------FRPDLIVVSAGFDAHAGD 256 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHH-----------HT-SEEEEEE-STTBTTS
T ss_pred chHHHHHHHhhccccchhc-----------ccCcEEEEccCcccchhc
Confidence 3444556666666443221 146999999999999874
No 36
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.25 E-value=65 Score=22.13 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=21.2
Q ss_pred HHHHHH-HHcCCCCCccccccccccCCeEEEEec
Q 048634 136 SSAVQT-ALGNNQNSDLLPVQMALAEEEFTWFLD 168 (175)
Q Consensus 136 ~~~l~~-~l~~~~~~~~~Pas~l~~~~~~~~~~D 168 (175)
++.+.. +.+.+.+ .+|-|.|..++.=+||+|
T Consensus 58 RdyL~~~i~~~G~e--P~PfS~L~g~~~~yWFl~ 89 (89)
T PF10078_consen 58 RDYLNDKIKEQGKE--PVPFSALKGDPADYWFLN 89 (89)
T ss_pred HHHHHHHHHHcCCC--CCCeeeeCCCcccccCCC
Confidence 344443 4444443 399999999988899975
No 37
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.21 E-value=91 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=22.6
Q ss_pred HHHHHHHHH-cCCCCCccccccccccCCeEEEEechh
Q 048634 135 KSSAVQTAL-GNNQNSDLLPVQMALAEEEFTWFLDKD 170 (175)
Q Consensus 135 K~~~l~~~l-~~~~~~~~~Pas~l~~~~~~~~~~D~~ 170 (175)
-++.+-+.+ +.+.++ .|-+.|....+-+||++-.
T Consensus 56 lRd~l~~~i~e~GqtP--~PfT~Lsgdk~~yWFl~~~ 90 (97)
T COG4367 56 LRDFLVQAIRESGQTP--VPFTALSGDKHQYWFLSWT 90 (97)
T ss_pred HHHHHHHHHHhcCCCC--CCeeeecCccccceeeccc
Confidence 345554444 444543 8999998877789998743
No 38
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.49 E-value=61 Score=22.65 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=10.9
Q ss_pred CcccEEEEccccc
Q 048634 67 PKFDLMLLGMGPD 79 (175)
Q Consensus 67 ~~~Dl~lLGmG~D 79 (175)
|.+|++++|.|..
T Consensus 52 p~pe~liiGtG~~ 64 (110)
T PF04430_consen 52 PKPEVLIIGTGKR 64 (110)
T ss_dssp CS-SEEEEEETTS
T ss_pred CCCcEEEEccCCc
Confidence 6889999999986
No 39
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=21.25 E-value=45 Score=29.79 Aligned_cols=15 Identities=53% Similarity=1.159 Sum_probs=14.0
Q ss_pred EEcccccCcccccCCC
Q 048634 73 LLGMGPDGHIASLFPG 88 (175)
Q Consensus 73 lLGmG~DGH~AslfP~ 88 (175)
+.|.|+|||.+ |||.
T Consensus 463 w~g~~pdG~~g-lfPa 477 (484)
T KOG3655|consen 463 WTGQGPDGEVG-LFPA 477 (484)
T ss_pred ccccCCCCCcC-cccc
Confidence 89999999999 9997
No 40
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.91 E-value=1.2e+02 Score=24.96 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=9.8
Q ss_pred cccEEEEcccc
Q 048634 68 KFDLMLLGMGP 78 (175)
Q Consensus 68 ~~Dl~lLGmG~ 78 (175)
+.|+++.|||.
T Consensus 161 ~pdil~VgmG~ 171 (253)
T COG1922 161 GPDILLVGMGV 171 (253)
T ss_pred CCCEEEEeCCC
Confidence 57999999995
No 41
>PTZ00346 histone deacetylase; Provisional
Probab=20.90 E-value=2e+02 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=14.5
Q ss_pred cccEEEEcccccCccc
Q 048634 68 KFDLMLLGMGPDGHIA 83 (175)
Q Consensus 68 ~~Dl~lLGmG~DGH~A 83 (175)
.+|++++..|-|+|..
T Consensus 268 ~PdlIvvsaG~Da~~~ 283 (429)
T PTZ00346 268 SPDAIVLQCGADSLAG 283 (429)
T ss_pred CCCEEEEECCccCCCC
Confidence 5799999999999976
No 42
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.01 E-value=1.8e+02 Score=23.78 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCCCCCCeEeCCC----CCCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccc-cCcccc
Q 048634 12 KLAYDGFLSQVPITTGNVYAIND----ALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGP-DGHIAS 84 (175)
Q Consensus 12 ~~~~~~ll~~~~i~~~~~~~~~~----~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~-DGH~As 84 (175)
..+|+.|- +-.++-+.+.. ..|+-.-+....+.|++. +||++|.|.+. ||-++-
T Consensus 71 ~~lr~aLA----mGaD~avli~d~~~~g~D~~~tA~~La~ai~~~---------------~~DLVl~G~~s~D~~tgq 129 (256)
T PRK03359 71 KGRKDVLS----RGPDELIVVIDDQFEQALPQQTASALAAAAQKA---------------GFDLILCGDGSSDLYAQQ 129 (256)
T ss_pred HHHHHHHH----cCCCEEEEEecCcccCcCHHHHHHHHHHHHHHh---------------CCCEEEEcCccccCCCCc
Confidence 45666653 33355454532 236666666666766653 59999999987 776654
Done!