BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048635
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 152/394 (38%), Gaps = 89/394 (22%)
Query: 201 LDLSQCDLRGKYPEKILQVS-TLETLDLSYNPLLQGSLPNF---PKNSYLQNLNLANTSF 256
LDLS + G+ PE + +S +L TLDLS N LPN PKN+ LQ L L N F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGF 403
Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXX 316
+G +P + L + L +G IP+S +L++L + N G IP
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ 457
Query: 317 XXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
++++ + ILD N L G +P L+NC
Sbjct: 458 ---------------------------ELMYVKTLETLILDF--NDLTGEIPSGLSNCTN 488
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
L + NN ++ P W+ +L +L L +N+FSG+I P L +D +N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 546
Query: 437 FGGRL-------SQKCSTTL--GMRY-----QATNKRCRDQA---------TEEMGRFK- 472
F G + S K + G RY K C +E++ R
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 473 -----------------------SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
S+ L+MS+N L+G IP G++ + L+L N++S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 510 GKIPAQXXXXXXXXXXXXXXXXXVGQIPTAKHVL 543
G IP + G+IP A L
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 186/438 (42%), Gaps = 84/438 (19%)
Query: 89 FTGEIPTEISSL-PRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE-LRELYLDNVDLS 146
F+GE+P +++L L+TLDLSS FS + +PN QN K L+ELYL N +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQNPKNTLQELYLQNNGFT 404
Query: 147 GLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLA-NLRSHSQFFFVANLLNLTNLDLSQ 205
G S L ++ HL+ N S + + +L L +L L
Sbjct: 405 GKIPPTLSNCSEL----------------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 206 CDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNLANTSFSGILPDPI 264
L G+ P++++ V TLETL L +N L G +P+ N + L ++L+N +G +P I
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXX 324
G L+ L + L + SF+G IP + L +D ++N F+G IP+
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-------------- 553
Query: 325 XXXXXXXXXXXXXXXXXXXDIIFPRNCGLHI-LDLSGN--QLQGVVPKSLAN------CN 375
++ +N G+ +GN + QG+ + L CN
Sbjct: 554 --AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435
+ + H S F N S+ L + N SG+I P+ S P L I++ N
Sbjct: 612 ITSRV--YGGHTSPTF----DNNGSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHN 663
Query: 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL 495
G + +E+G + L L++S N L G IP + L
Sbjct: 664 DISGSI-----------------------PDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 496 KQIESLDLSMNNLSGKIP 513
+ +DLS NNLSG IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 133/331 (40%), Gaps = 44/331 (13%)
Query: 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
LE LD+S N G +P S LQ+L+++ SG I L +++ S F
Sbjct: 199 LEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 282 GPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341
GPIP L L ++ + N F+G IP F
Sbjct: 258 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT----------------------- 292
Query: 342 XXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASS 400
L LDLSGN G VP +C++L+ L +N+ S P L
Sbjct: 293 -----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG----RLSQKCSTTLGMRYQAT 456
L+VL L N FSG + N+S LL + D +SN F G L Q TL Y
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTL-DLSSNNFSGPILPNLCQNPKNTLQELY-LQ 399
Query: 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQX 516
N + + L +L++S N L+G+IPSS G+L ++ L L +N L G+IP +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 517 XXXXXXXXXXXXXXXXVGQIPTAKHVLPNFN 547
G+IP+ N N
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 136/544 (25%), Positives = 214/544 (39%), Gaps = 113/544 (20%)
Query: 17 MSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIG----------------------- 53
+ WS + N C + GV C + V +DLS++P+ +G
Sbjct: 27 LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 85
Query: 54 ------RLENASGLFSLQYMQSQFGXXXXXXXXXXXXSHCGF------TGEIPTEISS-- 99
+ ++ L SL ++ S F T + P ++S
Sbjct: 86 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 100 -LPRLVTLDLSSREPISG---FSWRLGIPNFNFFQNLKELRELYLDNVDLSG-LGTERCK 154
L L LDLS+ ISG W L EL+ L + +SG + RC
Sbjct: 146 KLNSLEVLDLSANS-ISGANVVGWVLS-------DGCGELKHLAISGNKISGDVDVSRCV 197
Query: 155 ALSFLPXXXXXXXXXXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPE 214
L FL +++ + F+ + L +LD+S L G +
Sbjct: 198 NLEFL-------------------DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 238
Query: 215 KILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI-GILKYLTRV 273
I + L+ L++S N + G +P P S LQ L+LA F+G +PD + G LT +
Sbjct: 239 AISTCTELKLLNISSNQFV-GPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 274 DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXX 333
DL F G +P + + L + SSN+FSG +P
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP------------------------ 332
Query: 334 XXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM-LQVLDFRNNHISDN-F 391
D + GL +LDLS N+ G +P+SL N + L LD +N+ S
Sbjct: 333 ---------MDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 392 PCWLRN-ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450
P +N ++LQ L L++N F+G I +N S L + + N G + +
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 451 MR-YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
+R + + +E+ K+L L + N LTG IPS N + + LS N L+
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 510 GKIP 513
G+IP
Sbjct: 501 GEIP 504
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 142/373 (38%), Gaps = 72/373 (19%)
Query: 88 GFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG-IPNFNFFQNLKELRELYLDNVDLS 146
GFTG+IP +S+ LV+L LS F++ G IP + +L +LR+L L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIP--SSLGSLSKLRDLKL------ 446
Query: 147 GLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQC 206
L+ L G I L +++ L L L
Sbjct: 447 --------WLNML-------------EGEIPQELMYVKT------------LETLILDFN 473
Query: 207 DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF-PKNSYLQNLNLANTSFSGILPDPIG 265
DL G+ P + + L + LS N L G +P + + L L L+N SFSG +P +G
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 266 ILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN---------------HFSGPIPS 310
+ L +DL + F G IP + + +F + H +G +
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 311 FHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKS 370
F F N + LD+S N L G +PK
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSP----TFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430
+ + L +L+ +N IS + P + + L +L L SN G I P+ + +L +
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEI 706
Query: 431 DFASNKFGGRLSQ 443
D ++N G + +
Sbjct: 707 DLSNNNLSGPIPE 719
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-----LQGSLPNFPKNSYL 246
V +L L LDLS L G+ P+ + ++ L +DLS N L G FP +L
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 247 QN 248
N
Sbjct: 733 NN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 152/394 (38%), Gaps = 89/394 (22%)
Query: 201 LDLSQCDLRGKYPEKILQVS-TLETLDLSYNPLLQGSLPNF---PKNSYLQNLNLANTSF 256
LDLS + G+ PE + +S +L TLDLS N LPN PKN+ LQ L L N F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGF 406
Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXX 316
+G +P + L + L +G IP+S +L++L + N G IP
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ 460
Query: 317 XXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
++++ + ILD N L G +P L+NC
Sbjct: 461 ---------------------------ELMYVKTLETLILDF--NDLTGEIPSGLSNCTN 491
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
L + NN ++ P W+ +L +L L +N+FSG+I P L +D +N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549
Query: 437 FGGRL-------SQKCSTTL--GMRY-----QATNKRCRDQA---------TEEMGRFK- 472
F G + S K + G RY K C +E++ R
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 473 -----------------------SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
S+ L+MS+N L+G IP G++ + L+L N++S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 510 GKIPAQXXXXXXXXXXXXXXXXXVGQIPTAKHVL 543
G IP + G+IP A L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 186/438 (42%), Gaps = 84/438 (19%)
Query: 89 FTGEIPTEISSL-PRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE-LRELYLDNVDLS 146
F+GE+P +++L L+TLDLSS FS + +PN QN K L+ELYL N +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQNPKNTLQELYLQNNGFT 407
Query: 147 GLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLA-NLRSHSQFFFVANLLNLTNLDLSQ 205
G S L ++ HL+ N S + + +L L +L L
Sbjct: 408 GKIPPTLSNCSEL----------------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 206 CDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNLANTSFSGILPDPI 264
L G+ P++++ V TLETL L +N L G +P+ N + L ++L+N +G +P I
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXX 324
G L+ L + L + SF+G IP + L +D ++N F+G IP+
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-------------- 556
Query: 325 XXXXXXXXXXXXXXXXXXXDIIFPRNCGLHI-LDLSGN--QLQGVVPKSLAN------CN 375
++ +N G+ +GN + QG+ + L CN
Sbjct: 557 --AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435
+ + H S F N S+ L + N SG+I P+ S P L I++ N
Sbjct: 615 ITSRV--YGGHTSPTF----DNNGSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHN 666
Query: 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL 495
G + +E+G + L L++S N L G IP + L
Sbjct: 667 DISGSI-----------------------PDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 496 KQIESLDLSMNNLSGKIP 513
+ +DLS NNLSG IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 133/331 (40%), Gaps = 44/331 (13%)
Query: 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
LE LD+S N G +P S LQ+L+++ SG I L +++ S F
Sbjct: 202 LEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 282 GPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341
GPIP L L ++ + N F+G IP F
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT----------------------- 295
Query: 342 XXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASS 400
L LDLSGN G VP +C++L+ L +N+ S P L
Sbjct: 296 -----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG----RLSQKCSTTLGMRYQAT 456
L+VL L N FSG + N+S LL + D +SN F G L Q TL Y
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTL-DLSSNNFSGPILPNLCQNPKNTLQELY-LQ 402
Query: 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQX 516
N + + L +L++S N L+G+IPSS G+L ++ L L +N L G+IP +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 517 XXXXXXXXXXXXXXXXVGQIPTAKHVLPNFN 547
G+IP+ N N
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 136/544 (25%), Positives = 214/544 (39%), Gaps = 113/544 (20%)
Query: 17 MSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIG----------------------- 53
+ WS + N C + GV C + V +DLS++P+ +G
Sbjct: 30 LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 88
Query: 54 ------RLENASGLFSLQYMQSQFGXXXXXXXXXXXXSHCGF------TGEIPTEISS-- 99
+ ++ L SL ++ S F T + P ++S
Sbjct: 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 100 -LPRLVTLDLSSREPISG---FSWRLGIPNFNFFQNLKELRELYLDNVDLSG-LGTERCK 154
L L LDLS+ ISG W L EL+ L + +SG + RC
Sbjct: 149 KLNSLEVLDLSANS-ISGANVVGWVLS-------DGCGELKHLAISGNKISGDVDVSRCV 200
Query: 155 ALSFLPXXXXXXXXXXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPE 214
L FL +++ + F+ + L +LD+S L G +
Sbjct: 201 NLEFL-------------------DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241
Query: 215 KILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI-GILKYLTRV 273
I + L+ L++S N + G +P P S LQ L+LA F+G +PD + G LT +
Sbjct: 242 AISTCTELKLLNISSNQFV-GPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 274 DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXX 333
DL F G +P + + L + SSN+FSG +P
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP------------------------ 335
Query: 334 XXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM-LQVLDFRNNHISDN-F 391
D + GL +LDLS N+ G +P+SL N + L LD +N+ S
Sbjct: 336 ---------MDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 392 PCWLRN-ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450
P +N ++LQ L L++N F+G I +N S L + + N G + +
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 451 MR-YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
+R + + +E+ K+L L + N LTG IPS N + + LS N L+
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 510 GKIP 513
G+IP
Sbjct: 504 GEIP 507
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 142/373 (38%), Gaps = 72/373 (19%)
Query: 88 GFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG-IPNFNFFQNLKELRELYLDNVDLS 146
GFTG+IP +S+ LV+L LS F++ G IP + +L +LR+L L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIP--SSLGSLSKLRDLKL------ 449
Query: 147 GLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQC 206
L+ L G I L +++ L L L
Sbjct: 450 --------WLNML-------------EGEIPQELMYVKT------------LETLILDFN 476
Query: 207 DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF-PKNSYLQNLNLANTSFSGILPDPIG 265
DL G+ P + + L + LS N L G +P + + L L L+N SFSG +P +G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 266 ILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN---------------HFSGPIPS 310
+ L +DL + F G IP + + +F + H +G +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 311 FHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKS 370
F F N + LD+S N L G +PK
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430
+ + L +L+ +N IS + P + + L +L L SN G I P+ + +L +
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEI 709
Query: 431 DFASNKFGGRLSQ 443
D ++N G + +
Sbjct: 710 DLSNNNLSGPIPE 722
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-----LQGSLPNFPKNSYL 246
V +L L LDLS L G+ P+ + ++ L +DLS N L G FP +L
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 247 QN 248
N
Sbjct: 736 NN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 47/276 (17%)
Query: 247 QNLNLANTSFSGI-LPDPIGI------LKYLTRVDLRSCS-FTGPIPTSTTNLTQLFHVD 298
Q + N SG+ LP P I L YL + + + GPIP + LTQL ++
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 299 FSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDL 358
+ + SG IP F L LD
Sbjct: 108 ITHTNVSGAIPDFLSQIKT-----------------------------------LVTLDF 132
Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL-QVLVLRSNNFSGHISY 417
S N L G +P S+++ L + F N IS P + S L + + N +G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477
N++ L VD + N G S + + K ++G K+L L
Sbjct: 193 TFANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
++ +N + G++P LK + SL++S NNL G+IP
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNL-- 249
+A L L L ++ ++ G P+ + Q+ TL TLD SYN L G+LP P S L NL
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP--PSISSLPNLVG 153
Query: 250 -NLANTSFSGILPDPIGIL-KYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
SG +PD G K T + + TG IP + NL F VD S N G
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEG 211
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 122/305 (40%), Gaps = 49/305 (16%)
Query: 14 PAKMSQWSDSTNCCD--WTGVDCD---EAGHVIGLDLSA----EPILIGRLENASGLFSL 64
P +S W +T+CC+ W GV CD + V LDLS +P I S L +L
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-----PSSLANL 75
Query: 65 QYMQSQFGXXXXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIP 124
Y+ + G IP I+ L +L L ++ +SG IP
Sbjct: 76 PYLNFLY-----------IGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSG-----AIP 118
Query: 125 NFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLANLR 184
+F L +++ L + + L ++S LP G I
Sbjct: 119 DF-----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--- 170
Query: 185 SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNS 244
S S+ F T++ +S+ L GK P ++ L +DLS N L + F +
Sbjct: 171 SFSKLF--------TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
Q ++LA S + L +G+ K L +DLR+ G +P T L L ++ S N+
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 305 SGPIP 309
G IP
Sbjct: 281 CGEIP 285
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 40 LRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ + + +P +NLT L H+D
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 299 FSSN 302
SSN
Sbjct: 156 LSSN 159
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 181 ANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240
+NL+ S+F +L NL LD+S R + +S+LE L ++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------ 453
Query: 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
NS+ +N LPD L+ LT +DL C PT+ +L+ L ++ +
Sbjct: 454 -GNSFQENF----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 301 SNH 303
SN
Sbjct: 503 SNQ 505
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
L NLT LDLSQC L P +S+L+ L+++ N L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 41 LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ +P +NLT L H+D
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 299 FSSN 302
SSN
Sbjct: 157 LSSN 160
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 42 LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ +P +NLT L H+D
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 299 FSSN 302
SSN
Sbjct: 158 LSSN 161
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 41 LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ + + +P +NLT L H+D
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 299 FSSN 302
SSN
Sbjct: 157 LSSN 160
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 40 LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ + + +P +NLT L H+D
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 299 FSSN 302
SSN
Sbjct: 156 LSSN 159
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 64 LRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ + + +P +NLT L H+D
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 299 FSSN 302
SSN
Sbjct: 180 LSSN 183
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 23/124 (18%)
Query: 181 ANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240
+NL+ S+F +L NL LD+S R + +S+LE L ++
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------ 477
Query: 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
NS+ +N LPD L+ LT +DL C PT+ +L+ L ++ S
Sbjct: 478 -GNSFQENF----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 301 SNHF 304
N+F
Sbjct: 527 HNNF 530
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
L NLT LDLSQC L P +S+L+ L++S+N SL FP
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 537
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 201 LDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL 260
LDLS+C+++ +S L TL L+ NP+ +L F S LQ L T+ + +
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 261 PDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVDFSSN 302
PIG LK L +++ + + +P +NLT L H+D SSN
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 23/124 (18%)
Query: 181 ANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240
+NL+ S+F +L NL LD+S R + +S+LE L ++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------ 453
Query: 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
NS+ +N LPD L+ LT +DL C PT+ +L+ L ++ S
Sbjct: 454 -GNSFQENF----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 301 SNHF 304
N+F
Sbjct: 503 HNNF 506
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
L NLT LDLSQC L P +S+L+ L++S+N SL FP
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 513
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L +L S+S F F L LDLS+C+++ +S L TL L+ NP+ +L
Sbjct: 42 LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
F S LQ L T+ + + PIG LK L +++ + + +P +NLT L H+D
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 299 FSSN 302
SSN
Sbjct: 158 LSSN 161
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L L+S+S +N L LDLS+C++ + + L L L+ NP+ S +
Sbjct: 39 LKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 94
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD-----LRSCSFTGPIPTSTTNLTQL 294
F + L+NL T + + PIG L L +++ + SC +P +NLT L
Sbjct: 95 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC----KLPAYFSNLTNL 150
Query: 295 FHVDFSSNH 303
HVD S N+
Sbjct: 151 VHVDLSYNY 159
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
L L+S+S +N L LDLS+C++ + + L L L+ NP+ S +
Sbjct: 44 LKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD-----LRSCSFTGPIPTSTTNLTQL 294
F + L+NL T + + PIG L L +++ + SC +P +NLT L
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC----KLPAYFSNLTNL 155
Query: 295 FHVDFSSNH 303
HVD S N+
Sbjct: 156 VHVDLSYNY 164
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN- 435
+Q LD H+ + P + +SL+ LVL +N+F N S+P L+ + N
Sbjct: 279 VQELDLTAAHL-NGLPSGIEGMNSLKKLVLNANSFDQLCQI--NAASFPSLRDLYIKGNM 335
Query: 436 ---KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF 492
G R +K + ++ D ++ + L LN+S+N G +F
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 493 GNLKQIESLDLSMNNLSGKIP 513
Q+E LD++ +L K P
Sbjct: 396 KECPQLELLDVAFTHLHVKAP 416
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
+ L+NL LDL++C + + + L T+ L+ NPL+ + + +L++L L
Sbjct: 53 SRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLT 112
Query: 253 NTSFSGILPDPIGILKYLTRVDLRS 277
T S + P+ L+ L + L S
Sbjct: 113 QTGISNLEFIPVHNLENLESLHLGS 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 23/124 (18%)
Query: 181 ANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240
+NL+ S+F +L NL LD+S R + +S+LE L ++
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------ 158
Query: 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
NS+ +N LPD L+ LT +DL C PT+ +L+ L ++ S
Sbjct: 159 -GNSFQEN----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 301 SNHF 304
N+F
Sbjct: 208 HNNF 211
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
L NLT LDLSQC L P +S+L+ L++S+N SL FP
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 218
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
+ANL NL +L + L P I + LE LDL L+ P F + L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNL 291
+ S LP I L L ++DLR C +P+ L
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL--LQGSLPNFPKNSYLQNLNLA 252
L+NL +L L +R P I + L++L + +PL L ++ + PK L+ L+L
Sbjct: 182 LVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEELDLR 237
Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDF 299
+ P G L R+ L+ CS +P LTQL +D
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 7/162 (4%)
Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI 415
L+L ++ + + LQ LD H+ P ++ + L+ LVL N+F
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLK-GLPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 416 SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG----MRYQATNKRCRDQATEEMGRF 471
N +P L + N L C LG + + D + ++
Sbjct: 315 QISAAN--FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
L LN+SHN G +F Q+E LDL+ L P
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 197 NLTNLDLSQCDLRGK--YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT 254
NL LDLS D+ ++ +S L+TL+LS+N L F + L+ L+LA T
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 255 SFSGILPD-PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
P P L +L ++L C L L H++ NHF
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
+ L+NLT LDL++C + + + L TL L+ NPL+ + + L++L L
Sbjct: 51 SRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLI 110
Query: 253 NTSFSGILPDPIGILKYLTRVDLRS 277
T S + P+ L+ L + L S
Sbjct: 111 QTGISNLEFIPVHNLENLESLYLGS 135
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
LQ LD H+S+ P L S+L+ LVL +N F +N +P L + N
Sbjct: 280 LQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIKGNT 336
Query: 437 FGGRLSQKCSTTLG----MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF 492
L C L + + D ++ L +LN+S+N +F
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 493 GNLKQIESLDLSMNNLSGK 511
Q+E LDL+ L K
Sbjct: 397 KECPQLELLDLAFTRLKVK 415
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 201 LDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN--LNLANTSFSG 258
L LS CDL + + +DLS+N L S+ S+L+ LNLA+ S
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGIYLNLASNHISI 537
Query: 259 ILPDPIGILKYLTRVDLR 276
ILP + IL ++LR
Sbjct: 538 ILPSLLPILSQQRTINLR 555
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 199 TNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSG 258
T L++SQ + + IL +S L L +S+N + + F N L+ L+L++
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83
Query: 259 ILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHF--SGPIPSFH 312
I P LK+L DL +F PI N++QL + S+ H S +P H
Sbjct: 84 ISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLR------SN 409
LDLS N L V S + L+ L N+I P S+L+ L L+ S
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Query: 410 NFSGHISYPRNNVSW-PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM 468
+ + H + + W L+ ++ N S + + ++Y + +K T
Sbjct: 313 SLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN 372
Query: 469 GRFKSL-----YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515
F SL LN++ N ++ +F L Q+ LDL +N + K+ Q
Sbjct: 373 ETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 82/249 (32%), Gaps = 26/249 (10%)
Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN------PLLQGSLPNFPKNSYLQNLN 250
N+T L+L+ LR P + S L LD +N P L LP L+ LN
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILP------LLKVLN 79
Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
L + S I LT +DL S S N L +D S N S
Sbjct: 80 LQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---- 135
Query: 311 FHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKS 370
++ F N L LDLS N L+ P
Sbjct: 136 -----TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 371 LANCNMLQVLDFRNN----HISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
L L N H+++ CW + +S+Q L L +N + + W
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKL-CWELSNTSIQNLSLANNQLLATSESTFSGLKWTN 249
Query: 427 LQIVDFASN 435
L +D + N
Sbjct: 250 LTQLDLSYN 258
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
L LDLS N L + ++ L+VL NNHI + + LQ L L N S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 413 GH-ISYPRNNVSWPLLQIVDFASNKF 437
+ ++ P L ++D +SNK
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 224 TLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277
+LDLS+N L P+ P+ + LN N SF+G+ P G+ L +DL S
Sbjct: 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSS 281
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 196 LNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL--LQGSLPNFPKNSYLQNLNLAN 253
LNLT+L ++ C+L + + L L+LSYNP+ ++GS+ + LQ + L
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLVG 281
Query: 254 TSFSGILPDPIGILKYL 270
+ + P L YL
Sbjct: 282 GQLAVVEPYAFRGLNYL 298
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
L +L L+L + L G P S ++ L L N + + S F L+ LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSF 280
L + S ++P L LT ++L S F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 469 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508
GR L L + N LTG P++F I+ L L N +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
L L GNQ +VPK L+N L ++D NN IS N + L L+L N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,353,475
Number of Sequences: 62578
Number of extensions: 524683
Number of successful extensions: 1383
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 296
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)