Query 048635
Match_columns 562
No_of_seqs 432 out of 4188
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.3E-55 1.4E-59 489.7 36.5 511 15-543 46-594 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.8E-47 1.9E-51 423.9 29.3 468 70-554 86-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.7E-39 1.2E-43 307.8 8.7 310 197-543 126-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.2E-38 1.4E-42 300.7 7.4 298 197-529 150-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5E-41 1.1E-45 308.4 -16.0 432 38-533 45-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 3.7E-34 7.9E-39 277.0 -5.0 368 76-533 6-375 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 1.5E-35 3.3E-40 272.4 -16.2 424 70-544 61-528 (565)
8 KOG0444 Cytoskeletal regulator 100.0 5.2E-33 1.1E-37 269.0 -5.8 359 100-549 6-367 (1255)
9 KOG0618 Serine/threonine phosp 100.0 7E-33 1.5E-37 279.9 -5.4 413 40-531 47-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 6.3E-31 1.4E-35 265.9 -6.6 424 72-552 40-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.1E-23 4.6E-28 235.0 28.8 287 197-532 612-905 (1153)
12 PLN03210 Resistant to P. syrin 99.9 8E-23 1.7E-27 230.4 27.7 199 70-301 551-756 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.2E-24 7E-29 197.8 -2.2 265 161-439 68-360 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.1E-25 195.5 18.7 261 198-538 203-463 (788)
15 KOG4237 Extracellular matrix p 99.8 3E-23 6.5E-28 191.5 -5.5 394 79-530 69-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 7.6E-20 1.6E-24 191.7 18.1 266 161-518 202-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 7.5E-18 1.6E-22 178.0 14.0 247 196-509 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 4.7E-18 1E-22 179.5 11.6 251 160-485 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-19 8.8E-24 174.6 -2.2 163 351-532 137-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-18 3.8E-23 170.1 -0.9 239 266-535 21-293 (319)
21 KOG0617 Ras suppressor protein 99.7 7.8E-19 1.7E-23 144.0 -4.1 161 349-538 31-191 (264)
22 KOG0617 Ras suppressor protein 99.6 6.6E-18 1.4E-22 138.6 -4.9 185 312-538 30-217 (264)
23 KOG0532 Leucine-rich repeat (L 99.3 2E-13 4.4E-18 132.8 -4.3 159 341-533 89-247 (722)
24 KOG1909 Ran GTPase-activating 99.2 5.8E-13 1.3E-17 122.3 -2.4 90 349-438 155-254 (382)
25 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.4E-16 125.4 6.4 197 272-513 97-294 (394)
26 KOG1909 Ran GTPase-activating 99.2 6E-13 1.3E-17 122.2 -5.0 201 72-305 25-254 (382)
27 KOG3207 Beta-tubulin folding c 99.1 8.4E-12 1.8E-16 118.0 0.3 64 265-328 118-185 (505)
28 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.5E-16 110.4 1.8 137 287-441 279-415 (490)
29 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.5E-15 117.9 7.0 200 248-492 97-297 (394)
30 PLN03150 hypothetical protein; 99.1 3.5E-10 7.5E-15 119.7 10.8 127 18-171 390-526 (623)
31 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.9E-16 110.1 0.9 58 352-412 285-342 (490)
32 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3E-16 116.6 0.0 212 98-328 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 9.2E-11 2E-15 101.4 4.9 111 311-438 15-126 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.7E-17 123.6 -4.9 126 246-412 77-202 (722)
35 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 99.3 5.1 128 371-528 15-148 (175)
36 PLN03150 hypothetical protein; 99.0 7.1E-10 1.5E-14 117.4 8.3 113 401-538 420-533 (623)
37 KOG0531 Protein phosphatase 1, 98.9 1E-10 2.3E-15 118.3 -1.4 245 245-539 73-324 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 4.6E-10 1E-14 79.7 2.2 61 472-532 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 4.5E-10 9.8E-15 113.7 -0.0 196 75-305 70-268 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 5E-09 1.1E-13 74.3 3.2 59 352-410 2-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 7.7E-09 1.7E-13 112.0 3.6 280 243-539 544-848 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.6 1.9E-08 4.1E-13 109.0 3.6 224 197-439 546-784 (889)
43 COG5238 RNA1 Ran GTPase-activa 98.5 8.2E-09 1.8E-13 92.0 -2.8 246 38-306 30-317 (388)
44 COG5238 RNA1 Ran GTPase-activa 98.5 6.9E-09 1.5E-13 92.5 -4.0 167 154-328 86-285 (388)
45 KOG2120 SCF ubiquitin ligase, 98.4 4.4E-09 9.5E-14 95.0 -6.6 162 347-530 206-373 (419)
46 KOG2982 Uncharacterized conser 98.3 4.5E-08 9.7E-13 88.6 -1.7 61 267-327 70-133 (418)
47 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.5E-12 85.9 0.4 43 468-510 220-263 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 6.8E-09 1.5E-13 104.5 -8.6 127 293-437 165-291 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.3 7.3E-09 1.6E-13 93.6 -7.6 181 77-280 185-375 (419)
50 KOG1859 Leucine-rich repeat pr 98.2 2.3E-08 5.1E-13 100.8 -7.5 125 377-533 166-292 (1096)
51 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.3E-12 75.2 -2.4 137 377-541 29-167 (177)
52 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 75.7 -4.0 114 399-539 27-141 (177)
53 PF12799 LRR_4: Leucine Rich r 98.0 4.6E-06 1E-10 54.0 3.1 36 473-509 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 3.7E-06 7.9E-11 54.4 2.6 37 496-533 1-37 (44)
55 PRK15386 type III secretion pr 97.9 7.8E-05 1.7E-09 73.0 9.6 137 313-506 50-187 (426)
56 KOG1644 U2-associated snRNP A' 97.8 2.7E-05 5.9E-10 67.0 5.5 91 347-437 60-152 (233)
57 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.7E-10 67.1 5.1 112 77-209 42-153 (233)
58 PRK15386 type III secretion pr 97.8 9.9E-05 2.2E-09 72.2 9.3 139 288-483 48-188 (426)
59 KOG4341 F-box protein containi 97.7 5.2E-07 1.1E-11 85.7 -8.4 136 373-526 318-458 (483)
60 KOG4341 F-box protein containi 97.6 7.3E-07 1.6E-11 84.7 -7.7 13 99-111 162-174 (483)
61 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.8E-10 82.3 2.8 110 315-437 122-232 (699)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00036 7.9E-09 58.0 7.8 88 342-434 3-90 (129)
63 KOG3665 ZYG-1-like serine/thre 97.5 2E-05 4.4E-10 83.7 -0.3 62 347-410 169-231 (699)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0014 3.1E-08 54.4 7.7 121 263-401 7-128 (129)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00056 1.2E-08 61.7 1.4 92 73-174 39-130 (260)
66 PF08263 LRRNT_2: Leucine rich 96.8 0.00054 1.2E-08 44.1 1.0 22 14-35 20-43 (43)
67 KOG2123 Uncharacterized conser 96.7 4.9E-05 1.1E-09 68.7 -5.4 86 352-442 20-105 (388)
68 KOG2123 Uncharacterized conser 96.7 6.6E-05 1.4E-09 67.9 -5.1 82 132-232 18-100 (388)
69 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.6E-08 58.8 2.6 114 391-529 35-152 (260)
70 KOG1947 Leucine rich repeat pr 96.1 0.00048 1E-08 71.8 -3.8 89 76-171 187-280 (482)
71 KOG1947 Leucine rich repeat pr 96.0 0.00056 1.2E-08 71.3 -3.7 178 349-532 241-439 (482)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.5E-08 33.2 0.7 22 78-100 1-22 (22)
73 KOG4308 LRR-containing protein 95.6 0.00013 2.7E-09 74.3 -10.2 38 472-509 262-303 (478)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0073 1.6E-07 32.3 0.6 11 499-509 3-13 (22)
75 KOG4308 LRR-containing protein 93.4 0.00027 5.8E-09 72.0 -13.9 191 245-439 88-304 (478)
76 PF13504 LRR_7: Leucine rich r 92.1 0.096 2.1E-06 25.9 1.3 13 497-509 2-14 (17)
77 PF13516 LRR_6: Leucine Rich r 90.6 0.083 1.8E-06 28.8 0.2 15 496-510 2-16 (24)
78 smart00370 LRR Leucine-rich re 90.2 0.29 6.2E-06 27.2 2.2 14 496-509 2-15 (26)
79 smart00369 LRR_TYP Leucine-ric 90.2 0.29 6.2E-06 27.2 2.2 14 496-509 2-15 (26)
80 KOG3864 Uncharacterized conser 90.1 0.049 1.1E-06 47.5 -1.5 60 377-436 103-162 (221)
81 KOG0473 Leucine-rich repeat pr 88.5 0.016 3.5E-07 51.5 -5.7 88 420-533 37-124 (326)
82 smart00370 LRR Leucine-rich re 87.8 0.5 1.1E-05 26.3 2.0 22 471-492 1-22 (26)
83 smart00369 LRR_TYP Leucine-ric 87.8 0.5 1.1E-05 26.3 2.0 22 471-492 1-22 (26)
84 KOG4242 Predicted myosin-I-bin 87.6 2 4.4E-05 42.8 7.2 62 161-231 215-279 (553)
85 KOG3864 Uncharacterized conser 84.7 0.081 1.8E-06 46.2 -3.3 34 198-231 103-136 (221)
86 KOG0473 Leucine-rich repeat pr 76.7 0.064 1.4E-06 47.8 -6.7 88 239-328 37-124 (326)
87 smart00365 LRR_SD22 Leucine-ri 76.0 2.2 4.8E-05 23.8 1.6 14 496-509 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 71.4 2.9 6.2E-05 23.3 1.3 13 473-485 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 68.2 19 0.0004 36.3 7.0 289 219-532 164-480 (553)
90 smart00368 LRR_RI Leucine rich 65.3 3.9 8.4E-05 23.2 1.1 13 497-509 3-15 (28)
91 smart00367 LRR_CC Leucine-rich 49.5 13 0.00028 20.4 1.5 13 100-112 1-13 (26)
92 KOG3763 mRNA export factor TAP 49.3 9.7 0.00021 39.0 1.6 60 472-533 218-283 (585)
93 KOG3763 mRNA export factor TAP 47.9 7.1 0.00015 39.9 0.5 63 373-439 216-284 (585)
94 TIGR00864 PCC polycystin catio 34.9 25 0.00054 43.7 2.3 33 478-510 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-55 Score=489.70 Aligned_cols=511 Identities=31% Similarity=0.469 Sum_probs=364.5
Q ss_pred CCCCCCCCCCCCCCcceeeeCCCCCeEEEECCCCCCcceeec-CCCCCcCcccccC---------ccc-cCCCCCCCEEe
Q 048635 15 AKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLE-NASGLFSLQYMQS---------QFG-LANLTNLTYLN 83 (562)
Q Consensus 15 ~~~~~w~~~~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~~-~~~~l~~l~~L~~---------~~~-l~~l~~L~~L~ 83 (562)
+.+..|....+||.|.|++|+..++|+.||++++ .+.+.+. .+..+.+|+.|.. |.. +.++++|++|+
T Consensus 46 ~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~ 124 (968)
T PLN00113 46 KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124 (968)
T ss_pred ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEE
Confidence 4578898788999999999987789999999998 7776651 1222233333322 222 23666677777
Q ss_pred cCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCC
Q 048635 84 LSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQ 163 (562)
Q Consensus 84 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~ 163 (562)
+++|++++.+|. +.+++|++|++++|.+ ....|..++++++|++|++++|.+....+ ..+.++++|+
T Consensus 125 Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~--------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~ 191 (968)
T PLN00113 125 LSNNNFTGSIPR--GSIPNLETLDLSNNML--------SGEIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLE 191 (968)
T ss_pred CcCCccccccCc--cccCCCCEEECcCCcc--------cccCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCC
Confidence 777766655553 4566667777766653 34567778888888888888887765433 4667788888
Q ss_pred EEecccCCCCCccchhcccccCCC------------CcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635 164 VLNLSSCLLLGPINHHLANLRSHS------------QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~l~~~~------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 231 (562)
+|++++|.+.+..|..+..+..+. .+..++++++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 888888888777776665554311 13445666777777777777766677777777777777777776
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCC-
Q 048635 232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS- 310 (562)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~- 310 (562)
+.......+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 5443334555667777777777777766777777777777777777777766777777777777777777777655443
Q ss_pred CCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCC
Q 048635 311 FHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNML 377 (562)
Q Consensus 311 ~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 377 (562)
+..+++|+.|++++|.+. ..++++.|.+.+.+|.. +..+++|+.|++++|.+++..|..+..+++|
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 466677777777777654 34666667776666665 6667777778887777777777777777778
Q ss_pred CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-
Q 048635 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT- 456 (562)
Q Consensus 378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~- 456 (562)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. +..+ ..++|+.|++++|++.+..|..+.....+..+..
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 507 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence 88888888777777777777778888888888776543 3332 4577888888888888777765544334444333
Q ss_pred hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536 (562)
Q Consensus 457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 536 (562)
.+.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|++|+|++|++++.+|..+..+++|++|++++|++.+.+
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 55677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCC
Q 048635 537 PTAKHVL 543 (562)
Q Consensus 537 p~~~~~~ 543 (562)
|...++.
T Consensus 588 p~~~~~~ 594 (968)
T PLN00113 588 PSTGAFL 594 (968)
T ss_pred CCcchhc
Confidence 8765543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.8e-47 Score=423.90 Aligned_cols=468 Identities=31% Similarity=0.433 Sum_probs=344.6
Q ss_pred ccccCCCCCCCEEecCCccCcccCCccC-CCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCC
Q 048635 70 QFGLANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGL 148 (562)
Q Consensus 70 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 148 (562)
+..|..+++|++|+|++|++++.+|..+ ..+++|++|++++|.+. ...|. +.+++|++|++++|.+...
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--------~~~p~--~~l~~L~~L~Ls~n~~~~~ 155 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--------GSIPR--GSIPNLETLDLSNNMLSGE 155 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--------cccCc--cccCCCCEEECcCCccccc
Confidence 5678899999999999999998888775 49999999999999853 33332 5689999999999998754
Q ss_pred CCccccccCCCCCCCEEecccCCCCCccchhcccccCCC------------CcccccCCCCCCEEEccCCcCcccCChhh
Q 048635 149 GTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS------------QFFFVANLLNLTNLDLSQCDLRGKYPEKI 216 (562)
Q Consensus 149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 216 (562)
.+ ..+..+++|++|++++|.+.+..|..+..+..++ .|..++++++|++|++++|.+.+..|..+
T Consensus 156 ~p---~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 156 IP---NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred CC---hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 43 5688999999999999999988887766554421 13445566666666666666666666666
Q ss_pred hCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635 217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296 (562)
Q Consensus 217 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (562)
..+++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 66666666666666554333345556666666777666666666666666666777777766666666666666667777
Q ss_pred eeCcCCcccccCCC-CCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCc
Q 048635 297 VDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362 (562)
Q Consensus 297 L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 362 (562)
|++++|.+.+..+. +..+++|+.|++++|.+. ..+++++|++.+.+|.. +..+++|+.|++++|.
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNS 391 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCE
Confidence 77777666654433 456667777777766654 34666666666666655 5555666777777777
Q ss_pred ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS 442 (562)
Q Consensus 363 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 442 (562)
+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+.+|
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecC
Confidence 66666666777777777777777777666777777777777777777776544 5555667777888888887777666
Q ss_pred hhhhhhhhhhhhh-hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCC
Q 048635 443 QKCSTTLGMRYQA-TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF 521 (562)
Q Consensus 443 ~~~~~~~~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 521 (562)
..+. ...+..+. ..+.+.+..|..+..+++|+.|++++|.+.+.+|+.+.++++|++|+|++|.+++.+|..+..+++
T Consensus 470 ~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 470 DSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred cccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 5332 12233222 256677888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeCcCCcceecCCCCC---CCCccccchHHHHh
Q 048635 522 LSVLNLSYNNLVGQIPTAK---HVLPNFNLHRRQLQ 554 (562)
Q Consensus 522 L~~L~l~~n~l~~~~p~~~---~~~~~l~~~~~~l~ 554 (562)
|++|++++|++++.+|..+ ..+..+++++|++.
T Consensus 549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 9999999999999999765 44666777777665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-39 Score=307.84 Aligned_cols=310 Identities=24% Similarity=0.253 Sum_probs=201.5
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 276 (562)
+++.|+|.+|.|+....+.+..++.|++|||+.|.+.+...+.|..-.++++|+|++|.|+......|..+.+|..|.++
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 46666666666665555666666667777777666666666666666667777777777766655666666667777777
Q ss_pred CCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI 355 (562)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~ 355 (562)
.|+++...+..|..+++|+.|++..|.+... ...|+++++|+.|.+..|.+. .+.+.+|.++.++++
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~------------kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS------------KLDDGAFYGLEKMEH 273 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc------------cccCcceeeecccce
Confidence 7777655555566677777777777766543 345666777777777766665 455555666667777
Q ss_pred EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435 (562)
Q Consensus 356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 435 (562)
|+|+.|++..+--+++.++++|+.|+++.|.|..+.++.+..+++|++|+|+.|+++... ++.+..+..|++|.|++|
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc
Confidence 777777766666666667777777777777776666666666677777777777766555 556666667777777777
Q ss_pred cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCCCcccccC
Q 048635 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSMNNLSGKI 512 (562)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~ 512 (562)
++. ......|..+++|+.|||++|.+++.+. ..|..+++|+.|++.+|++..+.
T Consensus 352 si~-----------------------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 352 SID-----------------------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred chH-----------------------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 662 1112234556667777777776654432 23566777777777777777555
Q ss_pred hhhhcCCCCCCeEeCcCCcceecCCCCCCCC
Q 048635 513 PAQLASLNFLSVLNLSYNNLVGQIPTAKHVL 543 (562)
Q Consensus 513 p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 543 (562)
..+|.+++.|++|||.+|.|...-|.+|..+
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc
Confidence 5666777777777777777766666666655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-38 Score=300.75 Aligned_cols=298 Identities=22% Similarity=0.219 Sum_probs=220.2
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 276 (562)
.|+.|||+.|.|+...-..|..-.++++|+|++|.+.......|..+.+|..|.|+.|+++...+..|..+++|+.|++.
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 35555555555543333334344566666666666666666666666667777777777766666666677777777777
Q ss_pred CCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI 355 (562)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~ 355 (562)
.|++.-.--..|.++++|+.|.+..|.+.... ..|..+.++++|+|..|++. .+.+..+.++.+|+.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~------------~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ------------AVNEGWLFGLTSLEQ 297 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh------------hhhcccccccchhhh
Confidence 77765332345667777777777777776533 34567777788888777776 555555777888888
Q ss_pred EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435 (562)
Q Consensus 356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 435 (562)
|++++|.|..+.++++..+++|++|+|+.|+++...+..|..+..|++|+|+.|.+.... ...+..+.+|++|||+.|
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCC
Confidence 999999888888888888899999999999998888888888889999999999888665 566777888999999999
Q ss_pred cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh
Q 048635 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515 (562)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 515 (562)
.++..+. .....+..+++|+.|++.+|++..+...+|..+++|++|||.+|.|..+-|++
T Consensus 376 ~ls~~IE--------------------Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 376 ELSWCIE--------------------DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred eEEEEEe--------------------cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 8865443 23345677889999999999998555578999999999999999998888888
Q ss_pred hcCCCCCCeEeCcC
Q 048635 516 LASLNFLSVLNLSY 529 (562)
Q Consensus 516 l~~l~~L~~L~l~~ 529 (562)
|..+ .|++|.+..
T Consensus 436 Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 436 FEPM-ELKELVMNS 448 (873)
T ss_pred cccc-hhhhhhhcc
Confidence 8887 888888764
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5e-41 Score=308.44 Aligned_cols=432 Identities=28% Similarity=0.347 Sum_probs=310.5
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccC--------ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQS--------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLS 109 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~--------~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 109 (562)
..+..+++++| .+....++...+..+..|.. |++++.+..++.++.++|+++ .+|+.++.+.+|+.++++
T Consensus 45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 34566777777 55444332222222222211 556666666666666666666 566666666666666666
Q ss_pred CCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCc
Q 048635 110 SREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189 (562)
Q Consensus 110 ~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~ 189 (562)
+|.+ ...++.++.+..|+.++..+|++++.+ +++..+.+|..+++.+|++....+..+.
T Consensus 123 ~n~~---------~el~~~i~~~~~l~dl~~~~N~i~slp----~~~~~~~~l~~l~~~~n~l~~l~~~~i~-------- 181 (565)
T KOG0472|consen 123 SNEL---------KELPDSIGRLLDLEDLDATNNQISSLP----EDMVNLSKLSKLDLEGNKLKALPENHIA-------- 181 (565)
T ss_pred ccce---------eecCchHHHHhhhhhhhccccccccCc----hHHHHHHHHHHhhccccchhhCCHHHHH--------
Confidence 6653 344555666666666666666666665 3555666666667777766655544332
Q ss_pred ccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCC
Q 048635 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKY 269 (562)
Q Consensus 190 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 269 (562)
++.|++|+...|.+. .+|..++.+.+|..|++..|.+ ...+.|.++..|++|+++.|.+.....+....+++
T Consensus 182 -----m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 -----MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred -----HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 567999999999888 7888899999999999999987 45669999999999999999987433344458999
Q ss_pred CcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc---------------------
Q 048635 270 LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN--------------------- 328 (562)
Q Consensus 270 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~--------------------- 328 (562)
+..|++++|+++ +.|+.+.-+.+|.+||+++|.+++.++.++.+ .|+.|.+.+|++.
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 999999999998 78888999999999999999999988888888 8999999999876
Q ss_pred ---------------------------------ceEECCCCcCcccCCccccCCCC--CcCEEECcCCcccccCCccCCC
Q 048635 329 ---------------------------------GVLNLGRNNLNGTLSDIIFPRNC--GLHILDLSGNQLQGVVPKSLAN 373 (562)
Q Consensus 329 ---------------------------------~~l~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~ 373 (562)
++++++..+++ .+|..+|..-. -.+.++++.|++. .+|..+..
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~ 409 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE 409 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence 23333333333 34443333221 1445555565555 44544444
Q ss_pred CCCCCE-EEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635 374 CNMLQV-LDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR 452 (562)
Q Consensus 374 l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 452 (562)
++.+.+ +.+++|.+ +.+|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|++
T Consensus 410 lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln---~LP~e~~~lv~Lq~LnlS~NrF--------------- 470 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN---DLPEEMGSLVRLQTLNLSFNRF--------------- 470 (565)
T ss_pred HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh---hcchhhhhhhhhheeccccccc---------------
Confidence 444333 33333333 446777888999999999999887 3477888888899999999987
Q ss_pred hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635 453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532 (562)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 532 (562)
...|..+-.+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|+++||+|
T Consensus 471 ---------r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 471 ---------RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ---------ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 456666666677777777889998666677999999999999999999 7888999999999999999999
Q ss_pred e
Q 048635 533 V 533 (562)
Q Consensus 533 ~ 533 (562)
.
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 8
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.7e-34 Score=276.96 Aligned_cols=368 Identities=23% Similarity=0.285 Sum_probs=236.6
Q ss_pred CCCCCEEecCCccCc-ccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 76 LTNLTYLNLSHCGFT-GEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 76 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
++..+-+|+++|.++ +..|.....+++++.|.|....+ ..+|+.++.+.+|++|.+++|++..+. .
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L---------~~vPeEL~~lqkLEHLs~~HN~L~~vh----G 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL---------EQVPEELSRLQKLEHLSMAHNQLISVH----G 72 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh---------hhChHHHHHHhhhhhhhhhhhhhHhhh----h
Confidence 444566677777776 34676677777777777766653 445666777777777777777776654 4
Q ss_pred ccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLL 233 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 233 (562)
.++.++.|+.+.+.+|++... +|.. +..+..|+.|++++|+++ ..|..+...+++-.|+|++|++.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~d------------iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTD------------IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCch------------hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence 677788888888888876442 2222 445566888899988888 77888888888888999998887
Q ss_pred CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCC
Q 048635 234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313 (562)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 313 (562)
...-+.|..+..|-.|+|++|++. .+|+.+..+.+|++|.+++|.+...-...+..+++|+.|.+++.+-+-.
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~------ 212 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD------ 212 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh------
Confidence 666667777888888888888887 4556677788888888888877633222344455566666666543321
Q ss_pred CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchH
Q 048635 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393 (562)
Q Consensus 314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 393 (562)
.+|.. +..+.+|..+|++.|.+. ..|+.+..+.+|+.|+|++|+++. +..
T Consensus 213 ---------------------------N~Pts-ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~ 262 (1255)
T KOG0444|consen 213 ---------------------------NIPTS-LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNM 262 (1255)
T ss_pred ---------------------------cCCCc-hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eec
Confidence 22322 334444455555555444 444555555555555555555544 222
Q ss_pred HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCC
Q 048635 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKS 473 (562)
Q Consensus 394 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~ 473 (562)
..+...+|++|+++.|+++ .+|.++..++.|+.|.+.+|++. ...+|..|+.+.+
T Consensus 263 ~~~~W~~lEtLNlSrNQLt---~LP~avcKL~kL~kLy~n~NkL~----------------------FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLT---VLPDAVCKLTKLTKLYANNNKLT----------------------FEGIPSGIGKLIQ 317 (1255)
T ss_pred cHHHHhhhhhhccccchhc---cchHHHhhhHHHHHHHhccCccc----------------------ccCCccchhhhhh
Confidence 2333445555555555554 23455555555555555555552 2345666777777
Q ss_pred CCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635 474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 474 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
|+.+..++|.+. .+|+.++.|..|+.|.|++|++- .+|+++.-++-|+.||+..|+-.
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 777777777776 67777777777777777777776 67777777777777777777644
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.5e-35 Score=272.42 Aligned_cols=424 Identities=23% Similarity=0.285 Sum_probs=312.2
Q ss_pred ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCC
Q 048635 70 QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLG 149 (562)
Q Consensus 70 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 149 (562)
..++.++..|.+|++++|+++ .+|++++.+..++.+++++|.+ ..+|..+.++.+|+.+++++|.+..++
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---------SELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---------hhccHHHhhhhhhhhhhccccceeecC
Confidence 456788888999999999888 6788889999999999999874 567888889999999999999888887
Q ss_pred CccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635 150 TERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY 229 (562)
Q Consensus 150 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 229 (562)
+ .+..+..|+.++..+|++....++ +..+.++..+++.+|++.. .|...-.++.|++|+...
T Consensus 131 ~----~i~~~~~l~dl~~~~N~i~slp~~-------------~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 131 D----SIGRLLDLEDLDATNNQISSLPED-------------MVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNS 192 (565)
T ss_pred c----hHHHHhhhhhhhccccccccCchH-------------HHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccch
Confidence 4 677788888889888888665433 4445568889999999984 444444589999999988
Q ss_pred CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC
Q 048635 230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309 (562)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 309 (562)
|- ...-.+.++.+.+|+.|++..|++. .+| .|.++..|+++++..|.+.-...+...+++++..||+.+|++++.+.
T Consensus 193 N~-L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 193 NL-LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred hh-hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 85 4445567888999999999999987 445 78899999999999999984333445589999999999999998777
Q ss_pred CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC----------------------
Q 048635 310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV---------------------- 367 (562)
Q Consensus 310 ~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---------------------- 367 (562)
.+.-+.+|++||+++|.++ .+|-. ++++ .|+.|-+.||.+...-
T Consensus 270 e~clLrsL~rLDlSNN~is------------~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDIS------------SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred HHHHhhhhhhhcccCCccc------------cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 7788889999999999887 56655 6666 6777878777654110
Q ss_pred ---------------Cc----cCCCCCCCCEEEcccCCCCCcchHHhhcCC--CCCEEEccCcccceecCCCCCCCCCCC
Q 048635 368 ---------------PK----SLANCNMLQVLDFRNNHISDNFPCWLRNAS--SLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 368 ---------------~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
+. .....-+.++|++++-+++....+.|..-. -...+++++|++... |..+..+..
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el---Pk~L~~lke 412 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL---PKRLVELKE 412 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh---hhhhHHHHH
Confidence 00 011234567777777777775444444322 256777777776632 333333332
Q ss_pred CCEE-EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCC
Q 048635 427 LQIV-DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM 505 (562)
Q Consensus 427 L~~L-~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~ 505 (562)
+.+. ++++|.+ +.+|........+.++...+++...+|..++.+..|+.|++|.|.+. ..|.++..+..++.+-.++
T Consensus 413 lvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 2222 2222222 33332222222334444444445778888999999999999999998 8899888888899999999
Q ss_pred CcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCc
Q 048635 506 NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP 544 (562)
Q Consensus 506 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 544 (562)
|++....|+.+.++.+|.+||+.+|.+. .+|+....++
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 9999888888999999999999999998 6776655554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.2e-33 Score=268.99 Aligned_cols=359 Identities=24% Similarity=0.331 Sum_probs=283.2
Q ss_pred CCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchh
Q 048635 100 LPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHH 179 (562)
Q Consensus 100 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 179 (562)
++-.|-+|+++|.+. +...|.....+++++.|.|...++..+| ..++.+.+
T Consensus 6 LpFVrGvDfsgNDFs-------g~~FP~~v~qMt~~~WLkLnrt~L~~vP----eEL~~lqk------------------ 56 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFS-------GDRFPHDVEQMTQMTWLKLNRTKLEQVP----EELSRLQK------------------ 56 (1255)
T ss_pred cceeecccccCCcCC-------CCcCchhHHHhhheeEEEechhhhhhCh----HHHHHHhh------------------
Confidence 344555666666543 2344555556666666666555555443 23444444
Q ss_pred cccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCC-CCCCCCCCCEEEccCCcCCC
Q 048635 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSG 258 (562)
Q Consensus 180 ~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~ 258 (562)
|++|.+.+|.+. .+...+..++.|+.+.+..|++....++ .+..+..|..|+|+.|++.
T Consensus 57 ------------------LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~- 116 (1255)
T KOG0444|consen 57 ------------------LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR- 116 (1255)
T ss_pred ------------------hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-
Confidence 555555555554 3344566677788888887777666555 5666788888888888887
Q ss_pred CCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcC
Q 048635 259 ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNL 338 (562)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~ 338 (562)
.+|..+.+.+++-.|++++|.|....-..+.++..|-.||+++|++...+|....+..|++|++++|++.
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~---------- 186 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN---------- 186 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh----------
Confidence 5678888888999999999999855445667888999999999999988888899999999999999876
Q ss_pred cccCCccccCCCCCcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCC
Q 048635 339 NGTLSDIIFPRNCGLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISY 417 (562)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 417 (562)
...-..++.+.+|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+.. .|+++..+++|+.|+|++|.++..
T Consensus 187 --hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL--- 260 (1255)
T KOG0444|consen 187 --HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITEL--- 260 (1255)
T ss_pred --HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeee---
Confidence 222222667778999999997643 3588899999999999999999987 899999999999999999999854
Q ss_pred CCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc-cCcChhccCCC
Q 048635 418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT-GSIPSSFGNLK 496 (562)
Q Consensus 418 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~p~~l~~l~ 496 (562)
.-....+.+|++|++|.|++ ...|.+++.+++|+.|.+.+|+++ .-+|..++.+.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQL------------------------t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQL------------------------TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred eccHHHHhhhhhhccccchh------------------------ccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 45667789999999999998 478899999999999999999987 34899999999
Q ss_pred CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCccccch
Q 048635 497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLH 549 (562)
Q Consensus 497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 549 (562)
+|+.+..++|++. ..|+.++.+..|+.|.|+.|++. .+|++.+.++.+++-
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVL 367 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCccee
Confidence 9999999999998 99999999999999999999998 899999998876543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=7e-33 Score=279.89 Aligned_cols=413 Identities=27% Similarity=0.313 Sum_probs=243.3
Q ss_pred eEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCc
Q 048635 40 VIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSW 119 (562)
Q Consensus 40 v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 119 (562)
+.+||++.+ .+. .. |..+..+.+|+.|+++.|.|. ..|.+..++.+|++++|.+|..
T Consensus 47 L~~l~lsnn-~~~-~f--------------p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l------ 103 (1081)
T KOG0618|consen 47 LKSLDLSNN-QIS-SF--------------PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL------ 103 (1081)
T ss_pred eEEeecccc-ccc-cC--------------CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh------
Confidence 677888877 322 22 334555555666666666555 4455555666666666655542
Q ss_pred cccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccC-------------------CCCCccchhc
Q 048635 120 RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSC-------------------LLLGPINHHL 180 (562)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n-------------------~~~~~~~~~~ 180 (562)
...|..+..+++|++|+++.|.+..+|. .+..+..++.+..++| .+.+.++..+
T Consensus 104 ---~~lP~~~~~lknl~~LdlS~N~f~~~Pl----~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 104 ---QSLPASISELKNLQYLDLSFNHFGPIPL----VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred ---hcCchhHHhhhcccccccchhccCCCch----hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 3445555566666666666665555542 2333333333333333 3333222222
Q ss_pred ccccC---CCC----cccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccC
Q 048635 181 ANLRS---HSQ----FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253 (562)
Q Consensus 181 ~~l~~---~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~ 253 (562)
..+.. +.. ...+..+.+|+.|....|.+.... -.-++++.|+.++|.+. ....-....+|++++++.
T Consensus 177 ~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISH 250 (1081)
T ss_pred hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce--eeccccccccceeeecch
Confidence 11110 000 001222233333333333332110 11255666666666654 222222245788888888
Q ss_pred CcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEEC
Q 048635 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL 333 (562)
Q Consensus 254 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l 333 (562)
++++. +|.|+..+.+|+.+++.+|.++ .+|..+....+|+.|.+..|.+...++.....++|++|+|..|.+.
T Consensus 251 n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~----- 323 (1081)
T KOG0618|consen 251 NNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP----- 323 (1081)
T ss_pred hhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-----
Confidence 88884 4588888899999999998886 6777777888899999999888877776677889999999988876
Q ss_pred CCCcCcccCCccccCCCCC-cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc
Q 048635 334 GRNNLNGTLSDIIFPRNCG-LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412 (562)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 412 (562)
.+|..++..... +..++.+.|++.......=..++.|+.|++.+|.+++.....+.++++|+.|+|++|++.
T Consensus 324 -------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 324 -------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred -------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 566554444443 666777777766433222234567888899999998877777888889999999999888
Q ss_pred eecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc
Q 048635 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF 492 (562)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l 492 (562)
.+. ...+.+++.|++|++|+|++. .+|..+..++.|++|...+|++. ..| .+
T Consensus 397 ~fp--as~~~kle~LeeL~LSGNkL~------------------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 397 SFP--ASKLRKLEELEELNLSGNKLT------------------------TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cCC--HHHHhchHHhHHHhcccchhh------------------------hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 666 667788888999999999883 33444444444555555555544 344 34
Q ss_pred cCCCCCCeeeCCCCccccc-ChhhhcCCCCCCeEeCcCCc
Q 048635 493 GNLKQIESLDLSMNNLSGK-IPAQLASLNFLSVLNLSYNN 531 (562)
Q Consensus 493 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~ 531 (562)
..++.|+.+|+|.|+++.. +|..... ++|++||++||.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 4455555555555554431 2222111 445555555543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=6.3e-31 Score=265.86 Aligned_cols=424 Identities=25% Similarity=0.280 Sum_probs=272.6
Q ss_pred ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635 72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE 151 (562)
Q Consensus 72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 151 (562)
.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+ ...|....++.+|+++.|.+|.+...|
T Consensus 40 ~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i---------~~vp~s~~~~~~l~~lnL~~n~l~~lP-- 107 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI---------RSVPSSCSNMRNLQYLNLKNNRLQSLP-- 107 (1081)
T ss_pred HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH---------hhCchhhhhhhcchhheeccchhhcCc--
Confidence 3455666999999999998 7899999999999999999975 455678899999999999999999887
Q ss_pred cccccCCCCCCCEEecccCCCCCccchhcccccCCCC--------cccccCCCCCCEEEccCCcCcccCChhhhCCCCcc
Q 048635 152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ--------FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLE 223 (562)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 223 (562)
..+..+.+|+.|++++|.+.... ..+..+..... ...++.. .++.+++..+.+.+.++..+..+..
T Consensus 108 --~~~~~lknl~~LdlS~N~f~~~P-l~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 108 --ASISELKNLQYLDLSFNHFGPIP-LVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH-- 181 (1081)
T ss_pred --hhHHhhhcccccccchhccCCCc-hhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhhhe--
Confidence 57899999999999999886542 22222211000 1112222 2677777777777666666655555
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCc
Q 048635 224 TLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNH 303 (562)
Q Consensus 224 ~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 303 (562)
.|++.+|.+. ...+..+.+|+.+....|++.... -.-++++.|+.+.|.++...+. ....+|++++++.|.
T Consensus 182 ~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 182 QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN 252 (1081)
T ss_pred eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhh
Confidence 5778777653 223333445555555555443221 1223445555555544421111 111344555555555
Q ss_pred ccccCCCCCCCCCCCEEEcCCCCCc------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC
Q 048635 304 FSGPIPSFHESRNLNYLDLSSNNLN------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371 (562)
Q Consensus 304 ~~~~~~~~~~~~~L~~L~l~~n~l~------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 371 (562)
+.+.+.....+.+|+.++..+|.++ ..+....|.+. .+|.. ..+.+.|++|++..|++....+..+
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHH
Confidence 5443333344455555555555443 01111111111 44444 4556667777777776663333222
Q ss_pred CCCCC-CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 372 ANCNM-LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 372 ~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
..... |+.|+.+.|++.......=..++.|+.|.+.+|.++... ...+..++.|+.|+|++|++. ++|
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fp-------- 399 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFP-------- 399 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCC--------
Confidence 22222 555566666655422111123567888899999888654 667778899999999999882 222
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCC
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 530 (562)
...+.+++.|++|+||+|.++ .+|+.+..++.|++|...+|++. ..| .+..+++|+.+|++.|
T Consensus 400 --------------as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 400 --------------ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred --------------HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 234678889999999999999 78899999999999999999999 788 7889999999999999
Q ss_pred ccee-cCCCCC--CCCccccchHHH
Q 048635 531 NLVG-QIPTAK--HVLPNFNLHRRQ 552 (562)
Q Consensus 531 ~l~~-~~p~~~--~~~~~l~~~~~~ 552 (562)
+++. .+|+.. ..+..|++.+|-
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCc
Confidence 9873 334432 456666666654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.1e-23 Score=235.01 Aligned_cols=287 Identities=20% Similarity=0.270 Sum_probs=153.1
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 276 (562)
+|++|++.++.+. .++..+..+++|+.|+++++.. ...++.+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKN-LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCC-cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3444444444443 2333334444455555544321 1223334444555555555554434445555555555555555
Q ss_pred CCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356 (562)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L 356 (562)
+|...+.+|..+ ++++|+.|++++|......|.. ..+|+.|++++|.+. .+|.. + .+++|+.|
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~------------~lP~~-~-~l~~L~~L 752 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE------------EFPSN-L-RLENLDEL 752 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc------------ccccc-c-cccccccc
Confidence 544333444333 4555555555555433222221 234555555555543 33332 1 23445555
Q ss_pred ECcCCccc-------ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635 357 DLSGNQLQ-------GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429 (562)
Q Consensus 357 ~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 429 (562)
.+.++... ...+......++|+.|++++|.....+|..++++++|+.|++++|...... |... .+++|+.
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~ 829 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLES 829 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCE
Confidence 55443211 011111223456777777777666666777777777777777776533222 3333 5677777
Q ss_pred EEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 430 L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
|++++|.....+ |. ..++|+.|+|++|.++ .+|.++..+++|+.|++++|+--
T Consensus 830 L~Ls~c~~L~~~-----------------------p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 830 LDLSGCSRLRTF-----------------------PD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EECCCCCccccc-----------------------cc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 777776542221 11 1246777888888777 66777777888888888775443
Q ss_pred ccChhhhcCCCCCCeEeCcCCcc
Q 048635 510 GKIPAQLASLNFLSVLNLSYNNL 532 (562)
Q Consensus 510 ~~~p~~l~~l~~L~~L~l~~n~l 532 (562)
..+|..+..+++|+.+++++|.-
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CccCcccccccCCCeeecCCCcc
Confidence 35666677777788888877753
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8e-23 Score=230.36 Aligned_cols=199 Identities=23% Similarity=0.263 Sum_probs=119.7
Q ss_pred ccccCCCCCCCEEecCCcc------CcccCCccCCCCC-CCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccC
Q 048635 70 QFGLANLTNLTYLNLSHCG------FTGEIPTEISSLP-RLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDN 142 (562)
Q Consensus 70 ~~~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 142 (562)
...|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+ ...|..| ...+|++|++.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l---------~~lP~~f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL---------RCMPSNF-RPENLVKLQMQG 620 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC---------CCCCCcC-CccCCcEEECcC
Confidence 3457778888888776543 2234566666654 588888877763 3334444 457778888888
Q ss_pred ccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCc
Q 048635 143 VDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTL 222 (562)
Q Consensus 143 ~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 222 (562)
+++..++ ..+..+++|+.|+++++......|. ++.+++|++|++++|.....+|..+..+++|
T Consensus 621 s~l~~L~----~~~~~l~~Lk~L~Ls~~~~l~~ip~-------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 621 SKLEKLW----DGVHSLTGLRNIDLRGSKNLKEIPD-------------LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccccccc----cccccCCCCCEEECCCCCCcCcCCc-------------cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 7776654 3456777788888877654333321 4456677777777776555677777777777
Q ss_pred cEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcC
Q 048635 223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301 (562)
Q Consensus 223 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 301 (562)
+.|++++|... ..++....+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|++|.+.+
T Consensus 684 ~~L~L~~c~~L-~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 684 EDLDMSRCENL-EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred CEEeCCCCCCc-CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 77777776422 22332224566667777666544333322 345666666666654 344332 345555555554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-24 Score=197.81 Aligned_cols=265 Identities=19% Similarity=0.165 Sum_probs=188.1
Q ss_pred CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC-CCCCCCCCCC
Q 048635 161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY-NPLLQGSLPN 239 (562)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~ 239 (562)
.-..+.|..|.|+...+..|.. +++|+.|+|+.|.|+.+.|++|.++..+.+|-+-+ |.|....-..
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 5566777777777766555443 44577888888877777777777777766655544 6666666667
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc------------
Q 048635 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP------------ 307 (562)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~------------ 307 (562)
|.++..++.|.+.-|++.-...+.+..++++..|.+.+|.+.......+..+..++.+.+..|.+...
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 77777777777777777766666777777777777777777644444666777777777766652210
Q ss_pred -CCCCCCCCCCCEEEcCCCCCc-----------ceE--EC-CCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635 308 -IPSFHESRNLNYLDLSSNNLN-----------GVL--NL-GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372 (562)
Q Consensus 308 -~~~~~~~~~L~~L~l~~n~l~-----------~~l--~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 372 (562)
+..+++.....-..+.+.++. +.+ .+ +.....+..|...|.++++|++|++++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 001122222221222221111 000 11 122234567887899999999999999999999999999
Q ss_pred CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
+...+++|.|..|++.......|.++..|+.|+|.+|+++... +.++.....|.+|.+-.|++--
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeehccCcccC
Confidence 9999999999999998877778999999999999999999877 8889999999999999888743
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.4e-20 Score=195.50 Aligned_cols=261 Identities=24% Similarity=0.271 Sum_probs=139.0
Q ss_pred CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 277 (562)
-..|+++++.++ .+|..+. ++|+.|++.+|.+.. ++.. .++|++|++++|+++. +|. ..++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC--CCCC--CCCCcEEEecCCccCc-ccC---cccccceeeccC
Confidence 445666666665 4454443 356666666665432 2221 3556666666666653 232 134566666666
Q ss_pred CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357 (562)
Q Consensus 278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 357 (562)
|.++ .+|.. ..+|+.|++++|.++..+. ..++|+.|++++|.++ .+|.. ...|+.|+
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~------------~Lp~l----p~~L~~L~ 328 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA------------SLPAL----PSELCKLW 328 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccc------------cCCCC----cccccccc
Confidence 6665 23321 2456666666666654322 2345666666666554 23221 12355666
Q ss_pred CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+++|.+++ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|.+... +.. ..+|+.|++++|++
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~L 394 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRL 394 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC---ccc---ccccceEEecCCcc
Confidence 66666653 3321 2356666666666665 2321 24566666666666532 221 23566666666665
Q ss_pred CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhc
Q 048635 438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLA 517 (562)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 517 (562)
++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.
T Consensus 395 t~------------------------LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 395 TS------------------------LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred cC------------------------CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHh
Confidence 31 1111 135666666666666 34432 234566666666666 5666666
Q ss_pred CCCCCCeEeCcCCcceecCCC
Q 048635 518 SLNFLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 518 ~l~~L~~L~l~~n~l~~~~p~ 538 (562)
.+++|+.|++++|++++..|.
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hccCCCeEECCCCCCCchHHH
Confidence 666666666666666665544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=3e-23 Score=191.45 Aligned_cols=394 Identities=22% Similarity=0.240 Sum_probs=232.2
Q ss_pred CCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccC-ccCCCCCCccccccC
Q 048635 79 LTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDN-VDLSGLGTERCKALS 157 (562)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~ 157 (562)
-..++|..|+|+...|.+|..+++||.|||++|++ ....|++|.++++|..|-+.+ |+|++++. ..+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~ 137 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFG 137 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhh
Confidence 45688888999877888889999999999998884 466788888888887777776 88888876 5677
Q ss_pred CCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC-CC
Q 048635 158 FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ-GS 236 (562)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~ 236 (562)
++..|+.|.+..|++.-...+.|.. ++++..|.+..|.+....-..|..+..++.+.+..|++.. ..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~d------------L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRD------------LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHH------------hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 7888888888888877766555544 4457777888887774444467777777777777765311 11
Q ss_pred CCC-----------CCCCCCCCEEEccCCcCCCCCCCCCcCC-CCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCc
Q 048635 237 LPN-----------FPKNSYLQNLNLANTSFSGILPDPIGIL-KYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNH 303 (562)
Q Consensus 237 ~~~-----------~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~ 303 (562)
.+. +++..-.....+.+.++..+-+..+... ..+..--.+.+...+..| ..|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 111 1111111111222222221111111110 011111111122222222 235667777777777777
Q ss_pred ccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEc
Q 048635 304 FSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF 382 (562)
Q Consensus 304 ~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 382 (562)
++... ..|.+...+++|.|..|++. .+...+|.++..|+.|+|++|+|+.+.|.+|..+.+|.+|++
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLE------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHH------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 76643 34566677777777777665 555556777777777777777777777777777777777777
Q ss_pred ccCCCCC-----cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC---------------CCcCC
Q 048635 383 RNNHISD-----NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF---------------GGRLS 442 (562)
Q Consensus 383 ~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~---------------~~~~~ 442 (562)
-.|.+.- -..+|+..-. ..++ .--.....++.+++++..+ ++..|
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~------~~~~---------~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP 418 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKS------VVGN---------PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP 418 (498)
T ss_pred ccCcccCccchHHHHHHHhhCC------CCCC---------CCCCCCchhccccchhccccccccCCccccCCCCCCCCC
Confidence 6665532 1122322100 0000 0001112233333333222 11222
Q ss_pred hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCC
Q 048635 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 522 (562)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 522 (562)
+.+...-.. ..-.+.....+|+.+. ....+|.+.+|.++ .+|.. .+..| .+|+++|+++...-..|.++++|
T Consensus 419 ~~c~c~~tV--vRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql 490 (498)
T KOG4237|consen 419 PPCTCLDTV--VRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL 490 (498)
T ss_pred CCcchhhhh--HhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhh
Confidence 222111100 0001112233444443 34678999999999 77876 67888 99999999996666778999999
Q ss_pred CeEeCcCC
Q 048635 523 SVLNLSYN 530 (562)
Q Consensus 523 ~~L~l~~n 530 (562)
.+|-|++|
T Consensus 491 ~tlilsyn 498 (498)
T KOG4237|consen 491 STLILSYN 498 (498)
T ss_pred heeEEecC
Confidence 99999886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=7.6e-20 Score=191.73 Aligned_cols=266 Identities=24% Similarity=0.269 Sum_probs=178.9
Q ss_pred CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCC
Q 048635 161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240 (562)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 240 (562)
+-..|+++++.++. +|..+. .+|+.|++.+|.++ .+|. .+++|++|++++|.+... +.+
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--------------~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL--P~l 260 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--------------AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL--PVL 260 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--------------cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc--cCc
Confidence 45566666666653 332221 24677777777766 3443 246777777777766432 222
Q ss_pred CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEE
Q 048635 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYL 320 (562)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 320 (562)
.++|+.|++++|.++. +|.. .+.|+.|++++|+++ .+|. ..++|+.|++++|.+.+... + ..+|+.|
T Consensus 261 --p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L 327 (788)
T PRK15387 261 --PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKL 327 (788)
T ss_pred --ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC-C--ccccccc
Confidence 3567777777777763 3332 245777888888777 3443 23678888888888775432 1 2457777
Q ss_pred EcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCC
Q 048635 321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASS 400 (562)
Q Consensus 321 ~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 400 (562)
++++|.++ .+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++.. +|.. .++
T Consensus 328 ~Ls~N~L~------------~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 328 WAYNNQLT------------SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred ccccCccc------------ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 77777765 44431 1368889999888884 4442 3568888899998886 4543 357
Q ss_pred CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS 480 (562)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 480 (562)
|+.|++++|.+.... .. .++|+.|++++|++++ +|.. ..+|+.|+++
T Consensus 384 L~~LdLs~N~Lt~LP---~l---~s~L~~LdLS~N~Lss------------------------IP~l---~~~L~~L~Ls 430 (788)
T PRK15387 384 LKELIVSGNRLTSLP---VL---PSELKELMVSGNRLTS------------------------LPML---PSGLLSLSVY 430 (788)
T ss_pred cceEEecCCcccCCC---Cc---ccCCCEEEccCCcCCC------------------------CCcc---hhhhhhhhhc
Confidence 899999999887533 22 3678999999999842 2321 2467889999
Q ss_pred CCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcC
Q 048635 481 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 518 (562)
Q Consensus 481 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 518 (562)
+|+++ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 99999 78999999999999999999999888877643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=7.5e-18 Score=178.00 Aligned_cols=247 Identities=24% Similarity=0.357 Sum_probs=149.3
Q ss_pred CCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEc
Q 048635 196 LNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL 275 (562)
Q Consensus 196 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 275 (562)
.+...|+++++.++ .+|..+. +.|+.|++++|.+..... .+ .++|+.|++++|.++. +|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTS-IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence 35678888888777 4565442 468888888887653322 11 2478888888887773 44433 246788888
Q ss_pred cCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635 276 RSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI 355 (562)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~ 355 (562)
++|.+. .+|..+. .+|+.|++++|.+...+..+ .++|+.|++++|.++ .+|.. +. ++|+.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt------------~LP~~-lp--~sL~~ 308 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR------------TLPAH-LP--SGITH 308 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccc------------cCccc-ch--hhHHH
Confidence 888777 4555443 46777888777776543322 246777777777665 33332 11 24677
Q ss_pred EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435 (562)
Q Consensus 356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 435 (562)
|++++|.++. +|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|++... |..+ .++|+.|++++|
T Consensus 309 L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 309 LNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL---PETL--PPTITTLDVSRN 377 (754)
T ss_pred HHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC---Chhh--cCCcCEEECCCC
Confidence 7777777763 34333 2567777777777766 44443 25777777777776532 3322 256777777777
Q ss_pred cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc----cCCCCCCeeeCCCCccc
Q 048635 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF----GNLKQIESLDLSMNNLS 509 (562)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l----~~l~~L~~L~Ls~n~l~ 509 (562)
+++ . +|+.+. +.|+.|++++|++. .+|..+ ..++.+..|++.+|.++
T Consensus 378 ~Lt-~-----------------------LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 378 ALT-N-----------------------LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCC-C-----------------------CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 663 1 222222 24666777777776 444433 33466677777777766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.7e-18 Score=179.55 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=141.8
Q ss_pred CCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCC
Q 048635 160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239 (562)
Q Consensus 160 ~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 239 (562)
.+...|+++++.++.. |..+ .+.++.|++++|.++ .+|..+. ++|+.|++++|.+..... .
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~I--------------p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~-~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACI--------------PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPA-T 238 (754)
T ss_pred cCceEEEeCCCCcCcC-Cccc--------------ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCCh-h
Confidence 3456677766665542 2211 134777777777776 4454442 467777777776532211 1
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY 319 (562)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 319 (562)
+ ..+|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++.+..+ .++|+.
T Consensus 239 l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~ 308 (754)
T PRK15370 239 L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITH 308 (754)
T ss_pred h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHH
Confidence 1 235777777777766 3444332 45777777777776 3454443 46777777777766533222 235666
Q ss_pred EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635 320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS 399 (562)
Q Consensus 320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 399 (562)
|++++|.++ .+|.... ++|+.|++++|.+++ +|..+ .++|+.|++++|++.. +|..+ .+
T Consensus 309 L~Ls~N~Lt------------~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~ 367 (754)
T PRK15370 309 LNVQSNSLT------------ALPETLP---PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETL--PP 367 (754)
T ss_pred HHhcCCccc------------cCCcccc---ccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhh--cC
Confidence 666666655 3343211 356777777777664 44444 2567777777777764 44443 25
Q ss_pred CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM 479 (562)
Q Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 479 (562)
+|++|++++|.+... |..+. ..|+.|++++|++. .+|.. ++.....++.+..|++
T Consensus 368 ~L~~LdLs~N~Lt~L---P~~l~--~sL~~LdLs~N~L~-~LP~s-------------------l~~~~~~~~~l~~L~L 422 (754)
T PRK15370 368 TITTLDVSRNALTNL---PENLP--AALQIMQASRNNLV-RLPES-------------------LPHFRGEGPQPTRIIV 422 (754)
T ss_pred CcCEEECCCCcCCCC---CHhHH--HHHHHHhhccCCcc-cCchh-------------------HHHHhhcCCCccEEEe
Confidence 677777777776632 33222 35677777777764 22221 2222334466677777
Q ss_pred cCCcCc
Q 048635 480 SHNALT 485 (562)
Q Consensus 480 s~n~i~ 485 (562)
.+|.++
T Consensus 423 ~~Npls 428 (754)
T PRK15370 423 EYNPFS 428 (754)
T ss_pred eCCCcc
Confidence 777766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.1e-19 Score=174.59 Aligned_cols=163 Identities=23% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCC
Q 048635 351 CGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRN 420 (562)
Q Consensus 351 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~ 420 (562)
++|+.|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. .+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4566666666665521 233455566777777777777642 2233445567888888777765321 12334
Q ss_pred CCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCcc----CcChhccCC
Q 048635 421 NVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTG----SIPSSFGNL 495 (562)
Q Consensus 421 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~----~~p~~l~~l 495 (562)
+..+++|++|++++|++++.....+. ..+ ...+.|++|++++|.+++ .++..+..+
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 277 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALA-------------------SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHH-------------------HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence 55667888888888877542211110 001 124688999999998863 234556677
Q ss_pred CCCCeeeCCCCccccc----ChhhhcCC-CCCCeEeCcCCcc
Q 048635 496 KQIESLDLSMNNLSGK----IPAQLASL-NFLSVLNLSYNNL 532 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~l~~n~l 532 (562)
++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 278 ~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8899999999999854 44455555 7899999988874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.8e-18 Score=170.07 Aligned_cols=239 Identities=21% Similarity=0.240 Sum_probs=155.4
Q ss_pred CCCCCcEEEccCCccccc----CCccCCCCCCCCeeeCcCCcccc-------cCCCCCCCCCCCEEEcCCCCCcceEECC
Q 048635 266 ILKYLTRVDLRSCSFTGP----IPTSTTNLTQLFHVDFSSNHFSG-------PIPSFHESRNLNYLDLSSNNLNGVLNLG 334 (562)
Q Consensus 266 ~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~l~l~ 334 (562)
.++.|+.++++++.+++. ++..+...+.+++++++++.+.+ ....+..+++|+.|++++|.+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----- 95 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP----- 95 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-----
Confidence 334455555555554321 22233344455555555554431 01123446677777777776541
Q ss_pred CCcCcccCCccccCCC---CCcCEEECcCCcccc----cCCccCCCC-CCCCEEEcccCCCCCc----chHHhhcCCCCC
Q 048635 335 RNNLNGTLSDIIFPRN---CGLHILDLSGNQLQG----VVPKSLANC-NMLQVLDFRNNHISDN----FPCWLRNASSLQ 402 (562)
Q Consensus 335 ~~~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~ 402 (562)
..+.. +..+ ++|++|++++|.+.+ .+...+..+ ++|++|++++|.+++. .+..+..+++|+
T Consensus 96 ------~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 96 ------DGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred ------hHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 11111 2222 458899999888763 233345566 8999999999999842 344567788999
Q ss_pred EEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635 403 VLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS 480 (562)
Q Consensus 403 ~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 480 (562)
+|++++|.+.+.. .++..+..+++|++|++++|.+.+... +.+...+..+++|++|+++
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------------------SALAETLASLKSLEVLNLG 229 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------------------HHHHHHhcccCCCCEEecC
Confidence 9999999987421 113344556799999999999853321 2234456778999999999
Q ss_pred CCcCccCcChhccC-----CCCCCeeeCCCCcccc----cChhhhcCCCCCCeEeCcCCcceec
Q 048635 481 HNALTGSIPSSFGN-----LKQIESLDLSMNNLSG----KIPAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 481 ~n~i~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
+|.+++..+..+.. .+.|++|++++|.+++ .++..+..+++|+++++++|.+...
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 99998644433332 4799999999999973 3455677789999999999999844
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.8e-19 Score=144.00 Aligned_cols=161 Identities=27% Similarity=0.448 Sum_probs=128.4
Q ss_pred CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 428 (562)
.+..++.|.+++|+++ .+|..+..+.+|+.|++.+|++.+ .|..++.++.|+.|+++-|++. .+|..++.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh---cCccccCCCchhh
Confidence 3456777888888888 556668888889999999998877 6777888899999999888876 3478888999999
Q ss_pred EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508 (562)
Q Consensus 429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l 508 (562)
.||+++|++.. ...|..|..++.|+.|.+++|.+. .+|..++++++||.|.+..|.+
T Consensus 106 vldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 106 VLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 99999988852 345666777788888888888888 7777888888888888888888
Q ss_pred cccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635 509 SGKIPAQLASLNFLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 509 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 538 (562)
- .+|..++.+++|++|++.+|+++-..|+
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 7 6888888888888888888888844443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.6e-18 Score=138.62 Aligned_cols=185 Identities=27% Similarity=0.434 Sum_probs=141.1
Q ss_pred CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF 391 (562)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 391 (562)
..+..++.|.+++|+++ .+|.. +..+.+|+.|++++|+++ ..|..++.+++|+.|++.-|++.. .
T Consensus 30 f~~s~ITrLtLSHNKl~------------~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-l 94 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT------------VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-L 94 (264)
T ss_pred cchhhhhhhhcccCcee------------ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-C
Confidence 34455566666666665 55555 566667788888888887 577778888888888888888765 6
Q ss_pred hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc
Q 048635 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471 (562)
Q Consensus 392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 471 (562)
|..|+.+|.|+.|+++.|++... .+|..+..++.|+.|.+++|.+ ..+|+.++.+
T Consensus 95 prgfgs~p~levldltynnl~e~-~lpgnff~m~tlralyl~dndf------------------------e~lp~dvg~l 149 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDNDF------------------------EILPPDVGKL 149 (264)
T ss_pred ccccCCCchhhhhhccccccccc-cCCcchhHHHHHHHHHhcCCCc------------------------ccCChhhhhh
Confidence 88888888888888888887643 3578888888888888888887 5678889999
Q ss_pred CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC---CCCeEeCcCCcceecCCC
Q 048635 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN---FLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L~l~~n~l~~~~p~ 538 (562)
++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|..++.+. +=+.+.+.+|+....|.+
T Consensus 150 t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 150 TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred cceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 99999999999988 78999999999999999999999 6666666543 224555667776555543
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2e-13 Score=132.79 Aligned_cols=159 Identities=27% Similarity=0.418 Sum_probs=105.9
Q ss_pred cCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCC
Q 048635 341 TLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRN 420 (562)
Q Consensus 341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (562)
.+|.. +..+..|+.+.++.|.+. .+|..+.++..|+.+||+.|++.- .|..+..+| |+.|.+++|+++. +|+.
T Consensus 89 elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~~---lp~~ 161 (722)
T KOG0532|consen 89 ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLTS---LPEE 161 (722)
T ss_pred cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCcccc---CCcc
Confidence 66655 555566777788888777 677788888888888888888876 555566554 8888888888873 4666
Q ss_pred CCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCe
Q 048635 421 NVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES 500 (562)
Q Consensus 421 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~ 500 (562)
++..+.|..||.+.|.+ ..+|..++.+.+|+.|++.+|.+. .+|+.+. .=.|..
T Consensus 162 ig~~~tl~~ld~s~nei------------------------~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~ 215 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEI------------------------QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIR 215 (722)
T ss_pred cccchhHHHhhhhhhhh------------------------hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceee
Confidence 77778888888888887 234455555556666666666655 3444444 233555
Q ss_pred eeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635 501 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 501 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
||+|.|+++ .+|..|.+++.|++|-|.+|++.
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 666666665 55555666666666666666555
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=5.8e-13 Score=122.35 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=52.1
Q ss_pred CCCCcCEEECcCCcccccC----CccCCCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCC
Q 048635 349 RNCGLHILDLSGNQLQGVV----PKSLANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYP 418 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~ 418 (562)
.-+.|+++...+|.+.... ...|+..+.|+.+.++.|.|... ....+..+++|+.|+|++|-++... .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3345777777777665332 23445566777777777766432 2234666777777777777665322 223
Q ss_pred CCCCCCCCCCEEEcCCCcCC
Q 048635 419 RNNVSWPLLQIVDFASNKFG 438 (562)
Q Consensus 419 ~~~~~~~~L~~L~l~~n~~~ 438 (562)
..+..|++|++|++++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhcccchheeecccccccc
Confidence 44555556666666666553
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.1e-11 Score=125.39 Aligned_cols=197 Identities=30% Similarity=0.401 Sum_probs=95.0
Q ss_pred EEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCC-CCCEEEcCCCCCcceEECCCCcCcccCCccccCCC
Q 048635 272 RVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESR-NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRN 350 (562)
Q Consensus 272 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~ 350 (562)
.+....+.+... ...+...+.++.+++.+|.+....+...... +|+.|++++|.+. .+|.. ...+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~------------~l~~~-~~~l 162 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE------------SLPSP-LRNL 162 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh------------hhhhh-hhcc
Confidence 455665555311 2223344566666666666664444444442 5666666666554 33222 4455
Q ss_pred CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430 (562)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 430 (562)
++|+.|++++|++. .++......+.|+.|++++|++.. +|........|+++.+++|.+. ..+..+..+..+..+
T Consensus 163 ~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~---~~~~~~~~~~~l~~l 237 (394)
T COG4886 163 PNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII---ELLSSLSNLKNLSGL 237 (394)
T ss_pred ccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce---ecchhhhhccccccc
Confidence 55666666666655 233333345556666666665555 2332233334555555555322 113334444444444
Q ss_pred EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
.+.+|++. ..+..+..++.++.|++++|.++.. +. +..+.+++.|++++|.++.
T Consensus 238 ~l~~n~~~------------------------~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 238 ELSNNKLE------------------------DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccCCceee------------------------eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccc
Confidence 44444441 1133344444455555555555522 22 4455555555555555544
Q ss_pred cCh
Q 048635 511 KIP 513 (562)
Q Consensus 511 ~~p 513 (562)
..|
T Consensus 292 ~~~ 294 (394)
T COG4886 292 ALP 294 (394)
T ss_pred cch
Confidence 333
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=6e-13 Score=122.25 Aligned_cols=201 Identities=23% Similarity=0.238 Sum_probs=111.8
Q ss_pred ccCCCCCCCEEecCCccCccc----CCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCC
Q 048635 72 GLANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSG 147 (562)
Q Consensus 72 ~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 147 (562)
.+..+..+++++||+|.+... +...+...++|+..++++-. +.+....+|..+.-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-----tGR~~~Ei~e~L~~---------------- 83 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-----TGRLKDEIPEALKM---------------- 83 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-----cCCcHHHHHHHHHH----------------
Confidence 355566677777777766432 33334555666666665421 11222222222110
Q ss_pred CCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh------------
Q 048635 148 LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK------------ 215 (562)
Q Consensus 148 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------ 215 (562)
...++..+++|++++||+|-+....+..|..+ +..+..|++|++.+|.+.......
T Consensus 84 ----l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l--------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~k 151 (382)
T KOG1909|consen 84 ----LSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL--------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNK 151 (382)
T ss_pred ----HHHHHhcCCceeEeeccccccCccchHHHHHH--------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHh
Confidence 01455677788888888887766666655543 556778888888888776222222
Q ss_pred -hhCCCCccEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCcCCCC----CCCCCcCCCCCcEEEccCCccccc---
Q 048635 216 -ILQVSTLETLDLSYNPLLQGSLPN----FPKNSYLQNLNLANTSFSGI----LPDPIGILKYLTRVDLRSCSFTGP--- 283 (562)
Q Consensus 216 -l~~l~~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~--- 283 (562)
...-+.|+++...+|++...+... |...+.|+.+.++.|.|... ....+..+++|+.|++++|.++..
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 123466777777777654444332 23356677777776665422 123345666677777776666532
Q ss_pred -CCccCCCCCCCCeeeCcCCccc
Q 048635 284 -IPTSTTNLTQLFHVDFSSNHFS 305 (562)
Q Consensus 284 -~~~~l~~l~~L~~L~l~~n~~~ 305 (562)
+...+..++.|+.+++++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHhcccchheeecccccccc
Confidence 2234455566666666666554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.4e-12 Score=118.02 Aligned_cols=64 Identities=27% Similarity=0.285 Sum_probs=37.7
Q ss_pred cCCCCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCcccccCC---CCCCCCCCCEEEcCCCCCc
Q 048635 265 GILKYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNHFSGPIP---SFHESRNLNYLDLSSNNLN 328 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~l~ 328 (562)
.++..|+.+.+.++....... .....+++++.|+++.|-+....+ ....+++|+.|.++.|++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 345667777777776652211 244567777777777776554221 1245666666666666554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.6e-11 Score=110.40 Aligned_cols=137 Identities=26% Similarity=0.264 Sum_probs=100.7
Q ss_pred cCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc
Q 048635 287 STTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366 (562)
Q Consensus 287 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 366 (562)
.+..+..|+++|+++|.|+.......-.|.++.|++++|.+. .+.. +..+++|+.||+++|.++ .
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------------~v~n--La~L~~L~~LDLS~N~Ls-~ 343 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------------TVQN--LAELPQLQLLDLSGNLLA-E 343 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee------------eehh--hhhcccceEeecccchhH-h
Confidence 344556788888888888765555666788888888888776 2222 556677888888888877 4
Q ss_pred CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441 (562)
Q Consensus 367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 441 (562)
+.+|-..+-+.+.|.|++|.+.+ -..++.+-+|..|++++|++..... ...++++|.|+.+.+.+|++.+..
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence 55666677888888888888765 3446778888889999888875432 456788888999999999886543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.2e-10 Score=117.93 Aligned_cols=200 Identities=28% Similarity=0.392 Sum_probs=132.1
Q ss_pred EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCC-CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCC
Q 048635 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLT-QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNN 326 (562)
Q Consensus 248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 326 (562)
.+....+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|.+.........++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 5666666653221 23344567788888888777 4555555553 7888888888877554556777888888888887
Q ss_pred CcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEc
Q 048635 327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVL 406 (562)
Q Consensus 327 l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 406 (562)
+. .+|.. ....+.|+.|++++|++. .+|........|+++.+++|.+.. .+..+..+..+..+.+
T Consensus 175 l~------------~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l 239 (394)
T COG4886 175 LS------------DLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLEL 239 (394)
T ss_pred hh------------hhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhccccccccc
Confidence 76 44443 225566788888888877 455544455668888888885433 3445667777777777
Q ss_pred cCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635 407 RSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486 (562)
Q Consensus 407 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~ 486 (562)
.+|++... +..+..+++++.|++++|.++ .++. ++.+.+++.|++++|.+..
T Consensus 240 ~~n~~~~~---~~~~~~l~~l~~L~~s~n~i~------------------------~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 240 SNNKLEDL---PESIGNLSNLETLDLSNNQIS------------------------SISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred CCceeeec---cchhccccccceecccccccc------------------------cccc-ccccCccCEEeccCccccc
Confidence 77776632 456667777888888888773 2222 6677788888888888775
Q ss_pred CcChhc
Q 048635 487 SIPSSF 492 (562)
Q Consensus 487 ~~p~~l 492 (562)
..|...
T Consensus 292 ~~~~~~ 297 (394)
T COG4886 292 ALPLIA 297 (394)
T ss_pred cchhhh
Confidence 555443
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=3.5e-10 Score=119.73 Aligned_cols=127 Identities=29% Similarity=0.402 Sum_probs=94.8
Q ss_pred CCCCCCCCCC----CcceeeeCCC-----CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCcc
Q 048635 18 SQWSDSTNCC----DWTGVDCDEA-----GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCG 88 (562)
Q Consensus 18 ~~w~~~~~~c----~w~g~~c~~~-----~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~ 88 (562)
..|. ++.|+ .|.|+.|... ..|+.|+|+++ .+.+.+ |..+.++++|++|+|++|.
T Consensus 390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-~L~g~i--------------p~~i~~L~~L~~L~Ls~N~ 453 (623)
T PLN03150 390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-GLRGFI--------------PNDISKLRHLQSINLSGNS 453 (623)
T ss_pred CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-CccccC--------------CHHHhCCCCCCEEECCCCc
Confidence 3785 33442 7999999532 24888999998 777777 6788899999999999999
Q ss_pred CcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCC-CCCCCEEec
Q 048635 89 FTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNL 167 (562)
Q Consensus 89 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-l~~L~~L~l 167 (562)
+++.+|..++.+++|+.|++++|.+ ...+|..++++++|++|++++|.++...+ ..+.. ..++..+++
T Consensus 454 l~g~iP~~~~~l~~L~~LdLs~N~l--------sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 454 IRGNIPPSLGSITSLEVLDLSYNSF--------NGSIPESLGQLTSLRILNLNGNSLSGRVP---AALGGRLLHRASFNF 522 (623)
T ss_pred ccCcCChHHhCCCCCCEEECCCCCC--------CCCCchHHhcCCCCCEEECcCCcccccCC---hHHhhccccCceEEe
Confidence 9988998899999999999999984 35667778888888888888887765433 22322 234556666
Q ss_pred ccCC
Q 048635 168 SSCL 171 (562)
Q Consensus 168 ~~n~ 171 (562)
.+|.
T Consensus 523 ~~N~ 526 (623)
T PLN03150 523 TDNA 526 (623)
T ss_pred cCCc
Confidence 6664
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.8e-11 Score=110.14 Aligned_cols=58 Identities=31% Similarity=0.319 Sum_probs=29.4
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 412 (562)
.|+++|+++|.|+ .+.+...-.|.++.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 3555555555554 3344444455555555555555442 12444555555555555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-11 Score=116.60 Aligned_cols=212 Identities=25% Similarity=0.254 Sum_probs=128.9
Q ss_pred CCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccc
Q 048635 98 SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN 177 (562)
Q Consensus 98 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 177 (562)
.++.+|+.+.|.++.... ... -.....+++++.|||+.|-+....+ .+..+..+|+|+.|+++.|++.....
T Consensus 118 sn~kkL~~IsLdn~~V~~------~~~-~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED------AGI-EEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCccccc------cch-hhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCcc
Confidence 456777777777766321 000 0356677888888888876665432 23445678888888888887644321
Q ss_pred hhcccccCCCCcccccCCCCCCEEEccCCcCccc-CChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 048635 178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGK-YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256 (562)
Q Consensus 178 ~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 256 (562)
... -..+.+|+.|.+++|.++.. +...+..+|+|+.|+++.|...........-+..|++|+|++|++
T Consensus 190 s~~-----------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 190 SNT-----------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ccc-----------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 111 12355788888888888732 222334678888888888852222222223366788888888876
Q ss_pred CCCC-CCCCcCCCCCcEEEccCCcccccC-Ccc-----CCCCCCCCeeeCcCCcccc--cCCCCCCCCCCCEEEcCCCCC
Q 048635 257 SGIL-PDPIGILKYLTRVDLRSCSFTGPI-PTS-----TTNLTQLFHVDFSSNHFSG--PIPSFHESRNLNYLDLSSNNL 327 (562)
Q Consensus 257 ~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-----l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~l 327 (562)
.... -...+.+|.|..|+++.+.+.+.- |+. ...+++|++|++..|.+.. .......+++|+.|.+..|++
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5321 133567788888888888776432 221 2456777788887777753 222334556666666666665
Q ss_pred c
Q 048635 328 N 328 (562)
Q Consensus 328 ~ 328 (562)
+
T Consensus 339 n 339 (505)
T KOG3207|consen 339 N 339 (505)
T ss_pred c
Confidence 5
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=9.2e-11 Score=101.40 Aligned_cols=111 Identities=28% Similarity=0.354 Sum_probs=40.5
Q ss_pred CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC-CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC
Q 048635 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP-RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD 389 (562)
Q Consensus 311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 389 (562)
+.+...+++|++++|.++ .+.. +. .+.+|+.|++++|.++.. +.+..++.|++|++++|+++.
T Consensus 15 ~~n~~~~~~L~L~~n~I~------------~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS------------TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ---------------------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred cccccccccccccccccc------------cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc
Confidence 334455677777777665 2221 22 356788888888888743 357778889999999999988
Q ss_pred cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCC
Q 048635 390 NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG 438 (562)
Q Consensus 390 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~ 438 (562)
..+.....+|+|++|++++|++..... ...+..+++|++|++.+|++.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGG
T ss_pred cccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCccc
Confidence 433333468999999999999876543 355677899999999999884
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=4.5e-12 Score=123.58 Aligned_cols=126 Identities=28% Similarity=0.354 Sum_probs=65.7
Q ss_pred CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN 325 (562)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 325 (562)
-...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+.++++.|+++..+..+..++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp---------- 144 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP---------- 144 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc----------
Confidence 334555555555 34555555555566666555554 455555555555666665555553333322222
Q ss_pred CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEE
Q 048635 326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV 405 (562)
Q Consensus 326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 405 (562)
|+.|.+++|+++ .+|..++....|..||.+.|.+.. +|..++++.+|+.|+
T Consensus 145 ---------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 145 ---------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLN 195 (722)
T ss_pred ---------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHH
Confidence 555555555555 444455555555555555555554 344445555555555
Q ss_pred ccCcccc
Q 048635 406 LRSNNFS 412 (562)
Q Consensus 406 l~~n~l~ 412 (562)
++.|.+.
T Consensus 196 vrRn~l~ 202 (722)
T KOG0532|consen 196 VRRNHLE 202 (722)
T ss_pred Hhhhhhh
Confidence 5555544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2e-10 Score=99.28 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCCCCCEEEcccCCCCCcchHHhh-cCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh
Q 048635 371 LANCNMLQVLDFRNNHISDNFPCWLR-NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL 449 (562)
Q Consensus 371 l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 449 (562)
+.+..++++|+|.+|.|+.+ +.++ .+.+|+.|++++|.+... +.+..++.|++|++++|+++.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I~~---------- 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRISS---------- 78 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S----------
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc----cCccChhhhhhcccCCCCCCc----------
Confidence 34556788999999988763 3354 477889999999988753 345667888888888888732
Q ss_pred hhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccC---hhhhcCCCCCCe
Q 048635 450 GMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKI---PAQLASLNFLSV 524 (562)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~ 524 (562)
+.+.+ ..+++|++|++++|+|.+. .-..+..+++|+.|+|.+|.++..- ...+..+|+|+.
T Consensus 79 --------------i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 79 --------------ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp ---------------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred --------------cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 22223 3467888888888888642 1245677888888888888887421 234677888888
Q ss_pred EeCc
Q 048635 525 LNLS 528 (562)
Q Consensus 525 L~l~ 528 (562)
||-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 8743
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=7.1e-10 Score=117.41 Aligned_cols=113 Identities=30% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS 480 (562)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 480 (562)
++.|+|++|.+.+.. +..+..+++|+.|+|++|.+. +.+|..+..+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 420 IDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIR-----------------------GNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred EEEEECCCCCccccC--CHHHhCCCCCCEEECCCCccc-----------------------CcCChHHhCCCCCCEEECC
Confidence 566677777766544 666666777777777777763 4455556777788888888
Q ss_pred CCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCC-CCCCeEeCcCCcceecCCC
Q 048635 481 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 481 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 538 (562)
+|.+++.+|+.++++++|+.|+|++|++++.+|..+... .++..+++.+|+..+..|.
T Consensus 475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 888887778778888888888888888887787777653 4667777877775555553
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1e-10 Score=118.32 Aligned_cols=245 Identities=23% Similarity=0.246 Sum_probs=132.9
Q ss_pred CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS 324 (562)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 324 (562)
.++.+.+..|.+.. .-..+..+++|+.+++.+|.+.. +...+..+++|++|++++|.|+. +..+..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-ccchhhccchhhheecc
Confidence 34444444444432 11224445555555555555552 22224555666666666666652 23334444566666666
Q ss_pred CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 403 (562)
|.+. .+.. +..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..
T Consensus 150 N~i~------------~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~ 212 (414)
T KOG0531|consen 150 NLIS------------DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVL 212 (414)
T ss_pred Ccch------------hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHH
Confidence 6655 1111 3335566666777766664332 1 35666677777777766552 22333344444
Q ss_pred EEccCcccceecCCCCCCCCCC--CCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635 404 LVLRSNNFSGHISYPRNNVSWP--LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481 (562)
Q Consensus 404 L~l~~n~l~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 481 (562)
+++..|.+.... .+.... .|+.+++++|++. ..+..+..+..+..|++++
T Consensus 213 ~~l~~n~i~~~~----~l~~~~~~~L~~l~l~~n~i~------------------------~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 213 LSLLDNKISKLE----GLNELVMLHLRELYLSGNRIS------------------------RSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred hhcccccceecc----CcccchhHHHHHHhcccCccc------------------------cccccccccccccccchhh
Confidence 566667665433 222222 2677777777762 2224456667777788887
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCcccc---cChhh-hcCCCCCCeEeCcCCcceecCCCC
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLSG---KIPAQ-LASLNFLSVLNLSYNNLVGQIPTA 539 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~ 539 (562)
|.+... ..+...+.+..+..+.+++.. ..... ....+.++.+++.+|++....+..
T Consensus 265 n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 265 NRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred cccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence 777633 234556667777777777652 11111 445677788888888777665543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=4.6e-10 Score=79.69 Aligned_cols=61 Identities=46% Similarity=0.608 Sum_probs=56.7
Q ss_pred CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 532 (562)
|+|++|++++|+++...++.|..+++|++|++++|+++...|+.|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999976668999999999999999999988888999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=4.5e-10 Score=113.71 Aligned_cols=196 Identities=29% Similarity=0.280 Sum_probs=104.0
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
.+..++.+++..|.+.. +...+..+++|++|++.+|.+. .+...+..+++|++|++++|.|+.+ .
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~---------~i~~~l~~~~~L~~L~ls~N~I~~i-----~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE---------KIENLLSSLVNLQVLDLSFNKITKL-----E 134 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh---------hcccchhhhhcchheeccccccccc-----c
Confidence 45566666677776663 3334667777777777777642 1112255677777777777777766 3
Q ss_pred ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCC-hhhhCCCCccEEeccCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYP-EKILQVSTLETLDLSYNPLL 233 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~ 233 (562)
.+..++.|+.|++++|.+.... .+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~~--------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDIS--------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhccchhhheeccCcchhcc--------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 4566666777777777665421 13335566777777776664333 1 345566666666666542
Q ss_pred CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCC--CcEEEccCCcccccCCccCCCCCCCCeeeCcCCccc
Q 048635 234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKY--LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS 305 (562)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 305 (562)
.+..+.....+..+++..|.++..- .+..+.. |+.+++++|.+. ..+..+..+..+..+++.+|.+.
T Consensus 200 --~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 200 --EIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred --cccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 2222222333333455555544221 1122222 555555555554 12133344444555555544443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5e-09 Score=74.31 Aligned_cols=59 Identities=37% Similarity=0.499 Sum_probs=35.5
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcc
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN 410 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 410 (562)
+|++|++++|+++...+++|..+++|++|++++|++....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666665555556666666666666666665555556666666666666654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=7.7e-09 Score=111.99 Aligned_cols=280 Identities=19% Similarity=0.133 Sum_probs=140.8
Q ss_pred CCCCCEEEccCCc--CCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEE
Q 048635 243 NSYLQNLNLANTS--FSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYL 320 (562)
Q Consensus 243 ~~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 320 (562)
.+.|++|-+..|. +.......|..+|.|+.|++++|.-.+.+|..++.+-+|++|+++++.+...+..+..+..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 3456666666664 33333334566777777777766555567777777777777777777776666666667777777
Q ss_pred EcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCc--ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcC
Q 048635 321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ--LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNA 398 (562)
Q Consensus 321 ~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 398 (562)
++..+... ..+......+.+|++|.+..-. .+......+..+..|+.+....... . +..-+..+
T Consensus 624 nl~~~~~l------------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l~~~ 689 (889)
T KOG4658|consen 624 NLEVTGRL------------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L-LLEDLLGM 689 (889)
T ss_pred cccccccc------------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-H-hHhhhhhh
Confidence 77665432 1112224456667777665543 1222223344555555555543332 0 11111222
Q ss_pred CCCC----EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh-----h-hhhhhhhhCCCcccccccc
Q 048635 399 SSLQ----VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT-----L-GMRYQATNKRCRDQATEEM 468 (562)
Q Consensus 399 ~~L~----~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~-~l~~~~~~~~~~~~~~~~l 468 (562)
+.|. .+.+.++... .....+..+.+|+.|.+.++...........+. + .+......+.-.-..+...
T Consensus 690 ~~L~~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HHHHHHhHhhhhcccccc---eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 2222 3333222221 225566677788888887777643222110000 0 0000000111111122222
Q ss_pred cCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc-ChhhhcCC----------CCCCeEeCcCCcceecCC
Q 048635 469 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASL----------NFLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 469 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l----------~~L~~L~l~~n~l~~~~p 537 (562)
...++|+.|.+.++.....+......+..+..+-+..+.+.+. .-...+.+ +.|+.+.+..|+-.+..|
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence 3457888888888876655544555555555555555555432 11112222 225666666666666666
Q ss_pred CC
Q 048635 538 TA 539 (562)
Q Consensus 538 ~~ 539 (562)
..
T Consensus 847 ~~ 848 (889)
T KOG4658|consen 847 LL 848 (889)
T ss_pred cc
Confidence 43
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=1.9e-08 Score=109.02 Aligned_cols=224 Identities=21% Similarity=0.189 Sum_probs=100.6
Q ss_pred CCCEEEccCCc--CcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635 197 NLTNLDLSQCD--LRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274 (562)
Q Consensus 197 ~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 274 (562)
.|++|-+.++. +.....+.|..++.|+.||+++|.-...-+..++.+.+|++|++++..+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555553 33233333455555555555554322222223444555555555555555 4455555555555555
Q ss_pred ccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC---CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCC
Q 048635 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF---HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNC 351 (562)
Q Consensus 275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~ 351 (562)
+..+.....++.....+++|++|.+............ ..+..|+.+....... .+-.. +..+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-------------~~~e~-l~~~~ 690 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-------------LLLED-LLGMT 690 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-------------HhHhh-hhhhH
Confidence 5555443333444444555555555443311111111 2222222222211110 00000 11111
Q ss_pred CcC----EEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc------CCCCCEEEccCcccceecCCCCCC
Q 048635 352 GLH----ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN------ASSLQVLVLRSNNFSGHISYPRNN 421 (562)
Q Consensus 352 ~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~~~~~~~~~ 421 (562)
.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+....+... ++++..+.+.++..... +...
T Consensus 691 ~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~---l~~~ 766 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD---LTWL 766 (889)
T ss_pred HHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc---cchh
Confidence 121 2222222222 33445667788888888888776533322111 23344444444432211 2233
Q ss_pred CCCCCCCEEEcCCCcCCC
Q 048635 422 VSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 422 ~~~~~L~~L~l~~n~~~~ 439 (562)
...++|+.|.+..++...
T Consensus 767 ~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred hccCcccEEEEecccccc
Confidence 456888999998887643
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=8.2e-09 Score=92.03 Aligned_cols=246 Identities=21% Similarity=0.181 Sum_probs=129.4
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCcc---CcccC-------CccCCCCCCCcEEe
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCG---FTGEI-------PTEISSLPRLVTLD 107 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~---i~~~~-------~~~~~~l~~L~~L~ 107 (562)
..++.+||||| .+...- ...+ ...|.+-.+|+..+++.-- ..+.+ ..++.+||+|+..+
T Consensus 30 d~~~evdLSGN-tigtEA--~e~l--------~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 30 DELVEVDLSGN-TIGTEA--MEEL--------CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred cceeEEeccCC-cccHHH--HHHH--------HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 56889999999 443221 0001 1235556666666666531 11112 22355677777777
Q ss_pred CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc----------ccccCCCCCCCEEecccCCCCCccc
Q 048635 108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER----------CKALSFLPNLQVLNLSSCLLLGPIN 177 (562)
Q Consensus 108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~----------~~~l~~l~~L~~L~l~~n~~~~~~~ 177 (562)
||+|.+...+ .-..-+.++.-+.|.+|.+++|.+.-+.... .+....-|.|++...+.|++..-..
T Consensus 99 LSDNAfg~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 99 LSDNAFGSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccccccCccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 7777643211 1111233555667777777777654322110 0122345677777777777655433
Q ss_pred hhcccccCCCCcccccCCCCCCEEEccCCcCcccCC-----hhhhCCCCccEEeccCCCCCCCCCC----CCCCCCCCCE
Q 048635 178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYP-----EKILQVSTLETLDLSYNPLLQGSLP----NFPKNSYLQN 248 (562)
Q Consensus 178 ~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~ 248 (562)
..++.. +..-.+|+++.+.+|.|..... ..+..+.+|+.|++..|.++..... .++..+.|++
T Consensus 175 ~~~a~~--------l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 175 ELSAAL--------LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred HHHHHH--------HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 322211 1112467777777777653211 1223456777777777755432221 2333445777
Q ss_pred EEccCCcCCCCCCCCC------cCCCCCcEEEccCCcccccCCcc-------CCCCCCCCeeeCcCCcccc
Q 048635 249 LNLANTSFSGILPDPI------GILKYLTRVDLRSCSFTGPIPTS-------TTNLTQLFHVDFSSNHFSG 306 (562)
Q Consensus 249 L~L~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~~~~ 306 (562)
|.+.+|-++.....++ ...|+|..|....|.+.+..... -..+|-|..|.+.+|.+..
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7777776654322211 23567777777777665332211 1246667777778887764
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=6.9e-09 Score=92.50 Aligned_cols=167 Identities=20% Similarity=0.154 Sum_probs=111.3
Q ss_pred cccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhh-------------hCCC
Q 048635 154 KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI-------------LQVS 220 (562)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~ 220 (562)
.++.+||+|+..++|.|-+....|..+..+ ++.-+.|++|.+++|.+.......+ ..-|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~--------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp 157 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDL--------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP 157 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHH--------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC
Confidence 456788888888888888877776666543 6667788888888887653222212 2357
Q ss_pred CccEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCcCCCCC-----CCCCcCCCCCcEEEccCCccccc----CCcc
Q 048635 221 TLETLDLSYNPLLQGSLPN----FPKNSYLQNLNLANTSFSGIL-----PDPIGILKYLTRVDLRSCSFTGP----IPTS 287 (562)
Q Consensus 221 ~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 287 (562)
.|++.....|++..++... +.....|+++.+..|.|.... ...+.++.+|+.|++++|.++.. +...
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 8899999888876655432 222457888999888775321 12335678899999999988733 2334
Q ss_pred CCCCCCCCeeeCcCCcccccCC-----CC--CCCCCCCEEEcCCCCCc
Q 048635 288 TTNLTQLFHVDFSSNHFSGPIP-----SF--HESRNLNYLDLSSNNLN 328 (562)
Q Consensus 288 l~~l~~L~~L~l~~n~~~~~~~-----~~--~~~~~L~~L~l~~n~l~ 328 (562)
+..++.|++|.+.+|-++.... .| ...++|..|...+|.+.
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 5667788999998887764221 11 34566777777666543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.4e-09 Score=94.99 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=76.7
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcc-hHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNF-PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 424 (562)
+..+.+|+.|.+.|+++.+.+...++.-.+|+.|+++.|. ++... .-.+.+++.|++|+++.|.+...........--
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3444455555555555555555555555556666665553 22211 113455566666666666544321101111112
Q ss_pred CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCCeeeC
Q 048635 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDL 503 (562)
Q Consensus 425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~L 503 (562)
++|..|+++++.-. ++ ...+..-...+|+|..||||+|. ++......|-+++.|++|.+
T Consensus 286 e~l~~LNlsG~rrn----------l~----------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRN----------LQ----------KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred hhhhhhhhhhhHhh----------hh----------hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 44555555554320 00 00011112345666666666654 33333334555666666666
Q ss_pred CCCcccccChhh---hcCCCCCCeEeCcCC
Q 048635 504 SMNNLSGKIPAQ---LASLNFLSVLNLSYN 530 (562)
Q Consensus 504 s~n~l~~~~p~~---l~~l~~L~~L~l~~n 530 (562)
+.|.. .+|+. +...|+|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66653 34443 334456666666554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=4.5e-08 Score=88.56 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=35.0
Q ss_pred CCCCcEEEccCCcccc--cCCccCCCCCCCCeeeCcCCcccccCCCC-CCCCCCCEEEcCCCCC
Q 048635 267 LKYLTRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNL 327 (562)
Q Consensus 267 ~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l 327 (562)
++.++.+++.+|.+++ ++...+.++|.|+.|+++.|.+...+... ....+|+++.+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 4566667777776652 23334556666777777766666544443 3445566666555544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.2e-07 Score=85.95 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=22.9
Q ss_pred ccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccc
Q 048635 468 MGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 468 l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
...+|.+-.|+|+.++|... .-+.+..+++|..|.++++.+.+
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 33444555666666666521 12345556666666666666553
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=6.8e-09 Score=104.55 Aligned_cols=127 Identities=30% Similarity=0.273 Sum_probs=63.0
Q ss_pred CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635 293 QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372 (562)
Q Consensus 293 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 372 (562)
.|...+++.|.+......+.-++.++.|+|++|+++ .+. .+..++.|++|||+.|.+..+.--...
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~------------~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT------------KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV 230 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh------------hhH--HHHhcccccccccccchhccccccchh
Confidence 455555566655544334444555666666666554 111 144555566666666655532211222
Q ss_pred CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+++ |+.|.+++|.++.. ..+.++.+|+.|+++.|-+.+... .+.+..+..|+.|.|.+|++
T Consensus 231 gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence 233 55666666655442 224455556666666555543321 22334445555555555554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.3e-09 Score=93.56 Aligned_cols=181 Identities=26% Similarity=0.282 Sum_probs=124.3
Q ss_pred CCCCEEecCCccCccc-CCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCcc-CCCCCCcccc
Q 048635 77 TNLTYLNLSHCGFTGE-IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVD-LSGLGTERCK 154 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~ 154 (562)
+.|++||||+..|+.. +-.-+..|.+|+.|.+.++++ ...+...+++..+|+.|+++.++ +++... .-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~--~l 254 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNSNLVRLNLSMCSGFTENAL--QL 254 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc--------CcHHHHHHhccccceeeccccccccchhHH--HH
Confidence 3589999999887632 333367889999999998874 45566678888999999999864 443322 13
Q ss_pred ccCCCCCCCEEecccCCCCCccch-hcccccCCCCcccccCCCCCCEEEccCCcCc---ccCChhhhCCCCccEEeccCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINH-HLANLRSHSQFFFVANLLNLTNLDLSQCDLR---GKYPEKILQVSTLETLDLSYN 230 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~~ 230 (562)
.+..|+.|..|++++|........ .+.+ --++|+.|+++|+.-. ..+..-...+++|.+|||++|
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~h-----------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAH-----------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhh-----------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 457899999999999976553321 1112 1246888999887532 112222357899999999987
Q ss_pred CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCCC---CCcCCCCCcEEEccCCcc
Q 048635 231 PLLQG-SLPNFPKNSYLQNLNLANTSFSGILPD---PIGILKYLTRVDLRSCSF 280 (562)
Q Consensus 231 ~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l 280 (562)
..... ....|.+++.|++|.++.|.. ++|. .+...|.|.+|++.++--
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 54332 233577789999999999863 2333 346788999999988643
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=2.3e-08 Score=100.81 Aligned_cols=125 Identities=34% Similarity=0.320 Sum_probs=66.5
Q ss_pred CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT 456 (562)
Q Consensus 377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~ 456 (562)
|...+.+.|.+.. ....+.-++.|+.|+|+.|++... ..+..++.|++|||++|.+.
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~------------------ 222 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLR------------------ 222 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhc------------------
Confidence 4455555555543 334455555666666666665531 24455566666666666552
Q ss_pred hCCCcccccc-cccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC-hhhhcCCCCCCeEeCcCCcce
Q 048635 457 NKRCRDQATE-EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 457 ~~~~~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~ 533 (562)
.+|. ....+. |+.|++++|.++.. ..+.++.+|+.||+++|-+.+-. -.-+..+..|++|.|.||++.
T Consensus 223 ------~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 223 ------HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ------cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 1111 111222 66677777766622 24566677777777777665411 111344556677777777664
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.5e-07 Score=75.21 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCEEEcccCCCCCc--chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhh
Q 048635 377 LQVLDFRNNHISDN--FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ 454 (562)
Q Consensus 377 L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~ 454 (562)
+..++|+.|++-.+ .+..+.....|+..++++|.+.... +.....++.++.+++++|.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~nei----------------- 89 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEI----------------- 89 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC--HHHhhccchhhhhhcchhhh-----------------
Confidence 33455555554321 1122333444555566666555333 22333344555555555554
Q ss_pred hhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635 455 ATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 455 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 534 (562)
..+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+.. +|-.+-.-+..-..++.++++.+
T Consensus 90 -------sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 90 -------SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred -------hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccc
Confidence 244555666667777777777776 555555556667777777776663 33223222333333445556665
Q ss_pred cCCCCCC
Q 048635 535 QIPTAKH 541 (562)
Q Consensus 535 ~~p~~~~ 541 (562)
.-|...+
T Consensus 161 ~~~~klq 167 (177)
T KOG4579|consen 161 ETKKKLQ 167 (177)
T ss_pred cCccccc
Confidence 5554433
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=75.66 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=89.9
Q ss_pred CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc-CcCCCCEE
Q 048635 399 SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG-RFKSLYAL 477 (562)
Q Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~-~l~~L~~L 477 (562)
..+..++|+.|.+.........+.....|..+++++|.+ ..+|+.|. ..+.++.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f------------------------k~fp~kft~kf~t~t~l 82 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF------------------------KKFPKKFTIKFPTATTL 82 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh------------------------hhCCHHHhhccchhhhh
Confidence 356778888888764433344556667788899999998 23444444 34588999
Q ss_pred eCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 539 (562)
++++|.|+ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+.-+|.+. ++|.+
T Consensus 83 Nl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 83 NLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 99999999 68888999999999999999999 67888888999999999999887 66655
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.6e-06 Score=53.95 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=19.3
Q ss_pred CCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 473 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34444555666666666666555
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=3.7e-06 Score=54.43 Aligned_cols=37 Identities=43% Similarity=0.653 Sum_probs=32.2
Q ss_pred CCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635 496 KQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
++|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56777999999999999999998
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=7.8e-05 Score=72.97 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=77.7
Q ss_pred CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCcc
Q 048635 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDNF 391 (562)
Q Consensus 313 ~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 391 (562)
.+.+++.|++++|.++ .+|. ++ ++|+.|.+++|.--..+|+.+ .++|++|++++| .+.. +
T Consensus 50 ~~~~l~~L~Is~c~L~------------sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L 110 (426)
T PRK15386 50 EARASGRLYIKDCDIE------------SLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L 110 (426)
T ss_pred HhcCCCEEEeCCCCCc------------ccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c
Confidence 4677888888888766 4552 22 258888887754333555544 357888888877 4432 3
Q ss_pred hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc
Q 048635 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471 (562)
Q Consensus 392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 471 (562)
| ++|+.|.+..+.......+| ++|+.|.+.+++... ....+..+ .
T Consensus 111 P------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~---------------------~~~lp~~L--P 155 (426)
T PRK15386 111 P------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPEN---------------------QARIDNLI--S 155 (426)
T ss_pred c------cccceEEeCCCCCcccccCc------chHhheecccccccc---------------------cccccccc--C
Confidence 3 35677777665544322222 345666664322100 00111111 1
Q ss_pred CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n 506 (562)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 57888888888766 4555444 57888888765
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.7e-05 Score=67.03 Aligned_cols=91 Identities=24% Similarity=0.211 Sum_probs=64.3
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc-hHHhhcCCCCCEEEccCcccceecCCC-CCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNFSGHISYP-RNNVSW 424 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ 424 (562)
|+.++.|.+|.+.+|.|+.+-|..-.-+++|+.|.+.+|++.... ..-+..+|.|++|.+-+|++......- -.+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 677777888888888888666655555677888888888776521 123667888999998888877543322 235678
Q ss_pred CCCCEEEcCCCcC
Q 048635 425 PLLQIVDFASNKF 437 (562)
Q Consensus 425 ~~L~~L~l~~n~~ 437 (562)
|+|+.||..+-..
T Consensus 140 p~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 140 PSLRTLDFQKVTR 152 (233)
T ss_pred CcceEeehhhhhH
Confidence 8899998876554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=2.6e-05 Score=67.10 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=76.3
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
.....+||++|.+. .++ .|..++.|.+|.+.+|.++ ...|..-.-+++|+.|.+.+|++.++.. ...+
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~d--l~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGD--LDPL 109 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhh--cchh
Confidence 34567888888776 233 3777888888888888753 3334444456778888888888877654 3567
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCc
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR 209 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 209 (562)
..+|+|++|.+-+|.+....... ...+..+++|+.||+++-...
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR---------~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYR---------LYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ccCCccceeeecCCchhcccCce---------eEEEEecCcceEeehhhhhHH
Confidence 78888888888888765543211 234677888999888876543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=9.9e-05 Score=72.23 Aligned_cols=139 Identities=16% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCC-ccccc
Q 048635 288 TTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN-QLQGV 366 (562)
Q Consensus 288 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 366 (562)
+..+..++.|++++|.+... |. -..+|+.|.+++|.-. ..+|.. ++ ++|+.|++++| .+. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nL-----------tsLP~~-LP--~nLe~L~Ls~Cs~L~-s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNL-----------TTLPGS-IP--EGLEKLTVCHCPEIS-G 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCc-----------ccCCch-hh--hhhhheEccCccccc-c
Confidence 33467899999999987754 32 2347999999885421 144433 22 46999999998 454 3
Q ss_pred CCccCCCCCCCCEEEcccCCCCCcchHHhhcC-CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhh
Q 048635 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNA-SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKC 445 (562)
Q Consensus 367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 445 (562)
+| .+|+.|+++++.... +..+ ++|+.|.+.+++.......+ ..-.++|++|++++|...
T Consensus 110 LP------~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i------- 169 (426)
T PRK15386 110 LP------ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI------- 169 (426)
T ss_pred cc------cccceEEeCCCCCcc-----cccCcchHhheeccccccccccccc--cccCCcccEEEecCCCcc-------
Confidence 44 357888887765543 1122 35778887543311111111 112368999999988752
Q ss_pred hhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc
Q 048635 446 STTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA 483 (562)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 483 (562)
..|+.+. .+|+.|.++.+.
T Consensus 170 -----------------~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 170 -----------------ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred -----------------cCccccc--ccCcEEEecccc
Confidence 1233333 588999998774
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=5.2e-07 Score=85.69 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCCCCEEEcccCC-CCCcchHHh-hcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 373 NCNMLQVLDFRNNH-ISDNFPCWL-RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 373 ~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
++.+|+.|-+++|+ +++.-...+ .+++.|+.+++.++.......+...-..++.|+.+.+++|.....- +.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi----- 390 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GI----- 390 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hh-----
Confidence 45566666666664 222222222 2356666666666654433333344445666666666655431000 00
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcC-ccCcChhccCCCCCCeeeCCCCccc--ccChhhhcCCCCCCeEe
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL-TGSIPSSFGNLKQIESLDLSMNNLS--GKIPAQLASLNFLSVLN 526 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i-~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ 526 (562)
......-..+..|..+.+++++. ++..-+.+..+++|+.+++-+++-- ..+...-..+|++++.-
T Consensus 391 -----------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 391 -----------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred -----------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 00111123455677777777764 3444455667777777777776532 12222234556665543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=7.3e-07 Score=84.72 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=6.1
Q ss_pred CCCCCcEEeCCCC
Q 048635 99 SLPRLVTLDLSSR 111 (562)
Q Consensus 99 ~l~~L~~L~l~~n 111 (562)
.++++++|++.+|
T Consensus 162 ~CpnIehL~l~gc 174 (483)
T KOG4341|consen 162 NCPNIEHLALYGC 174 (483)
T ss_pred hCCchhhhhhhcc
Confidence 4444444444444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.1e-05 Score=82.25 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=60.7
Q ss_pred CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc-cCCccCCCCCCCCEEEcccCCCCCcchH
Q 048635 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG-VVPKSLANCNMLQVLDFRNNHISDNFPC 393 (562)
Q Consensus 315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 393 (562)
.+|++|++++... +....|...-..+|+|+.|.+.+-.+.. ..-....++++|..||+|++.++.. .
T Consensus 122 ~nL~~LdI~G~~~----------~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSEL----------FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--S 189 (699)
T ss_pred HhhhhcCccccch----------hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--H
Confidence 5677777766432 1223333334456667777776654432 2223345667777777777777663 4
Q ss_pred HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 394 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+++.+++|+.|.+.+=.+..... ...+..+++|+.||+|..+.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhccccHHHHhccCCCCCchhh-HHHHhcccCCCeeecccccc
Confidence 56667777777666554442110 22344566666666665544
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00036 Score=58.00 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=42.7
Q ss_pred CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC
Q 048635 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421 (562)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (562)
++..+|.++.+|+.+.+.. .+......+|.++++|+.+++.++ +.......|..+++++.+.+.+ .+.... ...+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~--~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG--DNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc--cccc
Confidence 4444566766777777764 455455666777777777777664 5554445566666777777754 333222 3334
Q ss_pred CCCCCCCEEEcCC
Q 048635 422 VSWPLLQIVDFAS 434 (562)
Q Consensus 422 ~~~~~L~~L~l~~ 434 (562)
..+++|+.+++..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 4455555555543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=2e-05 Score=83.67 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=29.0
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC-cchHHhhcCCCCCEEEccCcc
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSNN 410 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~ 410 (562)
+.++++|..||+++++++.. ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 34444555555555555422 344455555555555444432 111223345555555555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.0014 Score=54.35 Aligned_cols=121 Identities=18% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341 (562)
Q Consensus 263 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~ 341 (562)
.|..+++|+.+.+.. .+.......+..+++|+.+.+.++ +... ...+..+++++.+.+.. .+. .
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~------------~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK------------S 71 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-------------E
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc------------c
Confidence 344444455555442 233233334444445555555443 2211 11233343444444432 111 2
Q ss_pred CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401 (562)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 401 (562)
++...|..+++++.+++..+ +......++.++ .++.+.+.. .+.......|.++++|
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 33333444555555555443 332333444444 555555543 3333333444444444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00056 Score=61.73 Aligned_cols=92 Identities=25% Similarity=0.326 Sum_probs=60.9
Q ss_pred cCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc
Q 048635 73 LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER 152 (562)
Q Consensus 73 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 152 (562)
.-.+..|+.|++.+..++.. ..|..+++|++|.++.|.+. +.....-...++++|+++++++|++..+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~------~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-- 108 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRR------VSGGLEVLAEKAPNLKVLNLSGNKIKDLST-- 108 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccc------ccccceehhhhCCceeEEeecCCccccccc--
Confidence 34556677777777776632 23667888888888888421 223333345566888888888888775332
Q ss_pred ccccCCCCCCCEEecccCCCCC
Q 048635 153 CKALSFLPNLQVLNLSSCLLLG 174 (562)
Q Consensus 153 ~~~l~~l~~L~~L~l~~n~~~~ 174 (562)
...+..+.+|..|++.+|..+.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcchhhhhcccCCccc
Confidence 3456777888888888886655
No 66
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.77 E-value=0.00054 Score=44.13 Aligned_cols=22 Identities=41% Similarity=1.143 Sum_probs=15.7
Q ss_pred CCCCCCCCCC--CCCCCcceeeeC
Q 048635 14 PAKMSQWSDS--TNCCDWTGVDCD 35 (562)
Q Consensus 14 ~~~~~~w~~~--~~~c~w~g~~c~ 35 (562)
.+.+..|+.. .+||.|.||+|+
T Consensus 20 ~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 20 SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcccccCCCcCCCCCeeeccEEeC
Confidence 4889999986 799999999995
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=4.9e-05 Score=68.68 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=43.4
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
+.+.|++.||.+.++ .....++.|+.|.|+-|+|+..-| +..|+.|++|+|..|.|..... ...+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHh
Confidence 345555555555432 223345555666666665555333 4455556666666555543221 23344555666666
Q ss_pred cCCCcCCCcCC
Q 048635 432 FASNKFGGRLS 442 (562)
Q Consensus 432 l~~n~~~~~~~ 442 (562)
|..|+..|.-+
T Consensus 95 L~ENPCc~~ag 105 (388)
T KOG2123|consen 95 LDENPCCGEAG 105 (388)
T ss_pred hccCCcccccc
Confidence 66665544443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=6.6e-05 Score=67.89 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=55.0
Q ss_pred CCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCccc
Q 048635 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGK 211 (562)
Q Consensus 132 l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 211 (562)
+.+.+.|++.++.+.++ ..+.+++.|++|.|+-|+|+...| +..+++|++|+|..|.|.+.
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--------------l~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--------------LQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--------------HHHHHHHHHHHHHhcccccH
Confidence 34556677777777665 355677788888888877765432 56677788888888777632
Q ss_pred C-ChhhhCCCCccEEeccCCCC
Q 048635 212 Y-PEKILQVSTLETLDLSYNPL 232 (562)
Q Consensus 212 ~-~~~l~~l~~L~~L~L~~~~~ 232 (562)
. ...+.++++|+.|.|..|+-
T Consensus 79 dEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 79 DELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHHHHHhcCchhhhHhhccCCc
Confidence 1 23456777888888777764
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0016 Score=58.80 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=74.5
Q ss_pred chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC
Q 048635 391 FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470 (562)
Q Consensus 391 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 470 (562)
+......+..|+.+.+.+..++.. ..+..+++|+.|+++.|.... .+.+..-...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~---------------------~~~l~vl~e~ 89 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRV---------------------SGGLEVLAEK 89 (260)
T ss_pred cccccccccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccc---------------------cccceehhhh
Confidence 333444567788888888888753 345577899999999994422 1223333445
Q ss_pred cCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccC---hhhhcCCCCCCeEeCcC
Q 048635 471 FKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKI---PAQLASLNFLSVLNLSY 529 (562)
Q Consensus 471 l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~l~~ 529 (562)
+|+|+.|++++|+|... --..+..+.+|..|++.+|..+..- -..+.-+++|++||-..
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 68999999999998731 0123556777889999988876521 12355567777766443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.00048 Score=71.82 Aligned_cols=89 Identities=29% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCCCCEEecCCc-cCccc-CCccCCCCCCCcEEeCCCC-CCCCCCCccccCCCcccccCCCCCCEEEccCcc-CCCCCCc
Q 048635 76 LTNLTYLNLSHC-GFTGE-IPTEISSLPRLVTLDLSSR-EPISGFSWRLGIPNFNFFQNLKELRELYLDNVD-LSGLGTE 151 (562)
Q Consensus 76 l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~ 151 (562)
++.|+.|.+..+ .+... .-.....+++|+.|+++++ ..... ...........+.+|+.|+++++. +++...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l- 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL----SPLLLLLLLSICRKLKSLDLSGCGLVTDIGL- 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc----chhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence 566666666655 23311 2233455666666666552 11000 000011123344556666666555 333322
Q ss_pred cccccC-CCCCCCEEecccCC
Q 048635 152 RCKALS-FLPNLQVLNLSSCL 171 (562)
Q Consensus 152 ~~~~l~-~l~~L~~L~l~~n~ 171 (562)
..+. .+++|++|.+.+|.
T Consensus 262 --~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 262 --SALASRCPNLETLSLSNCS 280 (482)
T ss_pred --HHHHhhCCCcceEccCCCC
Confidence 2222 25566666655554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.00 E-value=0.00056 Score=71.33 Aligned_cols=178 Identities=23% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCCCcCEEECcCCc-ccccCCccCC-CCCCCCEEEcccCC-CCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQ-LQGVVPKSLA-NCNMLQVLDFRNNH-ISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424 (562)
Q Consensus 349 ~~~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 424 (562)
.+.+|+.++++++. +++..-..+. .+++|++|.+.+|. +++..- .....++.|++|+++.|.......+......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 33455666666555 4433222222 25666666666665 444222 22334666777776666543221112223334
Q ss_pred CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc-ChhccCCCCC-----
Q 048635 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQI----- 498 (562)
Q Consensus 425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L----- 498 (562)
++++.+.+....--..+ ....+........ .......+..++.++.+.+.++.+.... ...+..++.|
T Consensus 321 ~~l~~l~~~~~~~c~~l-----~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~ 394 (482)
T KOG1947|consen 321 PNLRELKLLSLNGCPSL-----TDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLE 394 (482)
T ss_pred cchhhhhhhhcCCCccH-----HHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHH
Confidence 55544443322210000 0000000000000 0112223566778888888887744322 2334455544
Q ss_pred ---------CeeeCCCCccc-ccChhhhcC-CCCCCeEeCcCCcc
Q 048635 499 ---------ESLDLSMNNLS-GKIPAQLAS-LNFLSVLNLSYNNL 532 (562)
Q Consensus 499 ---------~~L~Ls~n~l~-~~~p~~l~~-l~~L~~L~l~~n~l 532 (562)
+.|+++.+... ...-..... +..++.+++.+++.
T Consensus 395 ~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 395 LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 55555555433 122222222 44556666666543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0044 Score=33.18 Aligned_cols=22 Identities=50% Similarity=0.776 Sum_probs=15.9
Q ss_pred CCCEEecCCccCcccCCccCCCC
Q 048635 78 NLTYLNLSHCGFTGEIPTEISSL 100 (562)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~~~~l 100 (562)
+|++||+++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 677666553
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.57 E-value=0.00013 Score=74.29 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=18.5
Q ss_pred CCCCEEeCcCCcCccCc----ChhccCCCCCCeeeCCCCccc
Q 048635 472 KSLYALNMSHNALTGSI----PSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~----p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
..++.++++.|.|++.. .+.+..++.++++.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44555555555554322 233344455555555555554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0073 Score=32.29 Aligned_cols=11 Identities=73% Similarity=0.794 Sum_probs=4.1
Q ss_pred CeeeCCCCccc
Q 048635 499 ESLDLSMNNLS 509 (562)
Q Consensus 499 ~~L~Ls~n~l~ 509 (562)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.36 E-value=0.00027 Score=71.99 Aligned_cols=191 Identities=23% Similarity=0.203 Sum_probs=113.0
Q ss_pred CCCEEEccCCcCCCCC----CCCCcCCCCCcEEEccCCcccccCC----ccCCCC-CCCCeeeCcCCcccccCC-----C
Q 048635 245 YLQNLNLANTSFSGIL----PDPIGILKYLTRVDLRSCSFTGPIP----TSTTNL-TQLFHVDFSSNHFSGPIP-----S 310 (562)
Q Consensus 245 ~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~~~~-----~ 310 (562)
.+..+.+.+|.+.... ...+...+.|+.|++++|.+.+... ..+... ..+++|++..|.++.... .
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3778888888876432 2345667888999999998874322 223332 567778888887765322 1
Q ss_pred CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC----CccCCCCCC-CCEEEcccC
Q 048635 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV----PKSLANCNM-LQVLDFRNN 385 (562)
Q Consensus 311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~n 385 (562)
+.....++.++++.|.+. ..+...+...++. .+....++++|.+.+|.++... ...+...+. +.++++..|
T Consensus 168 L~~~~~l~~l~l~~n~l~---~~g~~~l~~~l~~-~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI---ELGLLVLSQALES-AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HhcccchhHHHHHhcccc---hhhhHHHhhhhhh-hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 234677888888888764 1111111111111 1224556788888887766321 223444455 666888888
Q ss_pred CCCCcc----hHHhhcC-CCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 386 HISDNF----PCWLRNA-SSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 386 ~l~~~~----~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
++.+.. ...+..+ +.++.+++..|.++... .+...+..++.++++.++.|.+..
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 776532 2233444 56677888888776432 124455566777888887777743
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.13 E-value=0.096 Score=25.88 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=4.8
Q ss_pred CCCeeeCCCCccc
Q 048635 497 QIESLDLSMNNLS 509 (562)
Q Consensus 497 ~L~~L~Ls~n~l~ 509 (562)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555444
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.59 E-value=0.083 Score=28.82 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=6.4
Q ss_pred CCCCeeeCCCCcccc
Q 048635 496 KQIESLDLSMNNLSG 510 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~~ 510 (562)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.17 E-value=0.29 Score=27.24 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=7.1
Q ss_pred CCCCeeeCCCCccc
Q 048635 496 KQIESLDLSMNNLS 509 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~ 509 (562)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.17 E-value=0.29 Score=27.24 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=7.1
Q ss_pred CCCCeeeCCCCccc
Q 048635 496 KQIESLDLSMNNLS 509 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~ 509 (562)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=0.049 Score=47.51 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=26.8
Q ss_pred CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436 (562)
Q Consensus 377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 436 (562)
++.++-+++.|..+.-+.+..+++++.|.+.+|.-.+...+...-.-.++|+.|++++|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 444555555544444444455555555555554422211111111133566666666554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.48 E-value=0.016 Score=51.49 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCC
Q 048635 420 NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 499 (562)
Q Consensus 420 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~ 499 (562)
.+......+.||++.|++. ..-..++-++.+..|+++.|++. -.|..+.....+.
T Consensus 37 ei~~~kr~tvld~~s~r~v------------------------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~ 91 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV------------------------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV 91 (326)
T ss_pred hhhccceeeeehhhhhHHH------------------------hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence 3445567788888888762 22334556678888999999998 7888899999999
Q ss_pred eeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635 500 SLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 500 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
.+++..|..+ ..|..+...+.++++++.+|++.
T Consensus 92 ~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 92 NAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 9999999988 78888899999999999998865
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.77 E-value=0.5 Score=26.26 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=16.8
Q ss_pred cCCCCEEeCcCCcCccCcChhc
Q 048635 471 FKSLYALNMSHNALTGSIPSSF 492 (562)
Q Consensus 471 l~~L~~L~Ls~n~i~~~~p~~l 492 (562)
+++|+.|+|++|+|....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4689999999999995444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.77 E-value=0.5 Score=26.26 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=16.8
Q ss_pred cCCCCEEeCcCCcCccCcChhc
Q 048635 471 FKSLYALNMSHNALTGSIPSSF 492 (562)
Q Consensus 471 l~~L~~L~Ls~n~i~~~~p~~l 492 (562)
+++|+.|+|++|+|....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4689999999999995444444
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.57 E-value=2 Score=42.78 Aligned_cols=62 Identities=29% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc---cCChhhhCCCCccEEeccCCC
Q 048635 161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG---KYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~L~~~~ 231 (562)
.+.+++++.|...+.+|..+.. ...-..++.++.+...+.- ..+......++++..+++.|.
T Consensus 215 ~lteldls~n~~Kddip~~~n~---------~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNK---------KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred cccccccccCCCCccchhHHHH---------hhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 4677777777776666544332 1222235566665555431 112222334556666666554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=0.081 Score=46.22 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=19.6
Q ss_pred CCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 231 (562)
++.++-+++.|..+.-+.+..++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 5566666666555555555556666666665553
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.66 E-value=0.064 Score=47.81 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=57.7
Q ss_pred CCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCC
Q 048635 239 NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLN 318 (562)
Q Consensus 239 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~ 318 (562)
.+..+...+.||++.|++.. .-..+..++.+..|+++.|.+. ..|..+.+...++.++...|..+..+..+...+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 44445566666766666542 2234555666777777777776 566677777777777777777776666667777777
Q ss_pred EEEcCCCCCc
Q 048635 319 YLDLSSNNLN 328 (562)
Q Consensus 319 ~L~l~~n~l~ 328 (562)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777776654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.96 E-value=2.2 Score=23.80 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=8.6
Q ss_pred CCCCeeeCCCCccc
Q 048635 496 KQIESLDLSMNNLS 509 (562)
Q Consensus 496 ~~L~~L~Ls~n~l~ 509 (562)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.40 E-value=2.9 Score=23.27 Aligned_cols=13 Identities=62% Similarity=0.692 Sum_probs=7.4
Q ss_pred CCCEEeCcCCcCc
Q 048635 473 SLYALNMSHNALT 485 (562)
Q Consensus 473 ~L~~L~Ls~n~i~ 485 (562)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.23 E-value=19 Score=36.32 Aligned_cols=289 Identities=19% Similarity=0.151 Sum_probs=133.4
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCC---cCCCCCcEEEccCCcccccCCccCCC---CC
Q 048635 219 VSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI---GILKYLTRVDLRSCSFTGPIPTSTTN---LT 292 (562)
Q Consensus 219 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l~~---l~ 292 (562)
-+.++.++++.|.+.......+..-.. -+.++.|..+..+...+ ..-..+.+++++.|...+.+|..+.. -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 356777888888765544444433111 15555555443211100 11124677788887777666543322 22
Q ss_pred CCCeeeCcCCccccc--CC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635 293 QLFHVDFSSNHFSGP--IP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368 (562)
Q Consensus 293 ~L~~L~l~~n~~~~~--~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (562)
-++.++.+...+... .. .++..+.++..+++.|..... ..+...++--+. |..-+++ +|++.++....+-+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~s---kg~Egg~~~k~~-fS~~~sg-hln~~~~~~psE~l 316 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPS---KGEEGGGAEKDT-FSPDPSG-HLNSRPRYTPSEKL 316 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcc---cccccccccccc-cCcCccc-ccccccccCchhhh
Confidence 355666665554321 11 124445666666666644300 011111111111 3333444 55555544332211
Q ss_pred ccC------CCCCCCCEEEcccCCCCCcc-hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635 369 KSL------ANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441 (562)
Q Consensus 369 ~~l------~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 441 (562)
..+ ..-+.=-++++..|...+.- .+.-..=..+++|.+.+|.+.+...-...+...++.+.+++..-.-....
T Consensus 317 ks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm 396 (553)
T KOG4242|consen 317 KSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVM 396 (553)
T ss_pred hhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceec
Confidence 110 00111124555555544311 11111112467777777766554322223344455555555332110000
Q ss_pred ChhhhhhhhhhhhhhhCCCcccccccc----cCcCCCCEEeCcCCcCccCcCh---hccCCCCCCeeeCCCCcccc----
Q 048635 442 SQKCSTTLGMRYQATNKRCRDQATEEM----GRFKSLYALNMSHNALTGSIPS---SFGNLKQIESLDLSMNNLSG---- 510 (562)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~l----~~l~~L~~L~Ls~n~i~~~~p~---~l~~l~~L~~L~Ls~n~l~~---- 510 (562)
. .+.....+ ...--+..+.++.|......-. ....-+.+..|++++|....
T Consensus 397 ~------------------s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap 458 (553)
T KOG4242|consen 397 D------------------SSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAP 458 (553)
T ss_pred c------------------ccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCC
Confidence 0 00000000 1112367788888887632222 23445778899999998764
Q ss_pred cChhhhcCCCCCCeEeCcCCcc
Q 048635 511 KIPAQLASLNFLSVLNLSYNNL 532 (562)
Q Consensus 511 ~~p~~l~~l~~L~~L~l~~n~l 532 (562)
.+|..+..-.+++....+.|..
T Consensus 459 ~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 459 PLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cCccccCCCCccCCCCCCCCCc
Confidence 4566666667788877777744
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.25 E-value=3.9 Score=23.20 Aligned_cols=13 Identities=46% Similarity=0.649 Sum_probs=6.4
Q ss_pred CCCeeeCCCCccc
Q 048635 497 QIESLDLSMNNLS 509 (562)
Q Consensus 497 ~L~~L~Ls~n~l~ 509 (562)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.47 E-value=13 Score=20.45 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=8.3
Q ss_pred CCCCcEEeCCCCC
Q 048635 100 LPRLVTLDLSSRE 112 (562)
Q Consensus 100 l~~L~~L~l~~n~ 112 (562)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566677776665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.27 E-value=9.7 Score=39.02 Aligned_cols=60 Identities=30% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCCEEeCcCCcCccCc--ChhccCCCCCCeeeCCCC--cccccChhhhcCC--CCCCeEeCcCCcce
Q 048635 472 KSLYALNMSHNALTGSI--PSSFGNLKQIESLDLSMN--NLSGKIPAQLASL--NFLSVLNLSYNNLV 533 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~--p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l--~~L~~L~l~~n~l~ 533 (562)
+.+..++|++|++-... ..--..-|+|.+|+|++| .+.. ..++.++ .-|++|-+.||++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 45666777777665221 111123466777777777 3331 1122222 34677777777765
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.88 E-value=7.1 Score=39.94 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=38.6
Q ss_pred CCCCCCEEEcccCCCCCc--chHHhhcCCCCCEEEccCc--ccceecCCCCCCC--CCCCCCEEEcCCCcCCC
Q 048635 373 NCNMLQVLDFRNNHISDN--FPCWLRNASSLQVLVLRSN--NFSGHISYPRNNV--SWPLLQIVDFASNKFGG 439 (562)
Q Consensus 373 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~--~~~~L~~L~l~~n~~~~ 439 (562)
+.+.+..++|++|++... +...-...|.|+.|+|++| .+.... .+. ....|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~----el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES----ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh----hhhhhcCCCHHHeeecCCcccc
Confidence 456677888888887652 1222334688888888888 333221 122 23457778888888743
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.94 E-value=25 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred eCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999996666788899999999999998863
Done!