Query 048635
Match_columns 562
No_of_seqs 432 out of 4188
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-62 1.4E-66 533.3 37.7 513 16-543 29-727 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.4E-50 2.5E-54 436.5 34.2 445 74-534 197-742 (768)
3 3t6q_A CD180 antigen; protein- 100.0 6E-49 2E-53 420.0 39.1 438 38-538 33-541 (606)
4 4eco_A Uncharacterized protein 100.0 7.6E-50 2.6E-54 426.6 28.2 437 16-538 56-605 (636)
5 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-48 3E-52 416.5 40.0 487 38-537 25-601 (680)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-47 2.1E-51 404.4 41.9 436 38-537 57-564 (606)
7 4ecn_A Leucine-rich repeat pro 100.0 6.1E-48 2.1E-52 418.2 33.6 425 30-540 315-847 (876)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-47 7.7E-52 407.8 35.4 440 38-537 32-562 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 1E-45 3.6E-50 400.2 41.5 497 38-546 49-635 (680)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-46 1.4E-50 411.1 32.2 481 27-553 14-559 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.5E-45 5.2E-50 391.0 34.5 434 38-540 28-538 (570)
12 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-45 2.8E-49 387.9 39.0 427 38-513 56-562 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-44 6.5E-49 380.6 29.7 451 38-537 26-514 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 4.1E-44 1.4E-48 380.0 28.3 431 77-552 28-529 (570)
15 4eco_A Uncharacterized protein 100.0 1.2E-43 4.1E-48 378.7 26.8 433 77-557 81-603 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-42 4.9E-47 382.8 32.6 444 70-556 41-541 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 3.4E-43 1.1E-47 381.1 25.5 432 77-557 323-843 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-42 1.4E-46 360.0 26.6 424 38-537 21-485 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-39 1.4E-43 346.1 39.8 426 38-534 52-581 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-41 2.2E-45 351.0 22.3 425 41-553 3-480 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-40 4E-45 351.7 22.1 443 77-552 26-508 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.8E-44 335.1 27.6 369 77-539 30-414 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-38 4.2E-43 336.5 29.7 425 34-537 27-514 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 5.7E-38 1.9E-42 337.3 31.4 446 77-552 52-578 (635)
25 1jl5_A Outer protein YOPM; leu 100.0 1.2E-37 4.1E-42 318.0 30.2 387 38-552 11-427 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 2.8E-37 9.7E-42 317.9 29.8 340 38-437 30-383 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-37 1.9E-41 323.9 30.1 391 38-513 52-514 (562)
28 1o6v_A Internalin A; bacterial 100.0 1E-35 3.4E-40 306.6 32.0 346 75-510 44-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 4E-36 1.4E-40 306.8 28.2 370 75-555 9-410 (454)
30 1o6v_A Internalin A; bacterial 100.0 1.7E-35 6E-40 304.8 32.3 344 38-486 46-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.9E-40 303.7 29.4 347 72-539 37-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-34 3.7E-39 296.5 30.5 312 38-439 42-353 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 5.9E-34 2E-38 294.8 31.5 346 137-538 15-361 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 3.4E-34 1.2E-38 296.6 28.2 321 163-535 14-335 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 6.3E-33 2.2E-37 279.2 29.7 312 131-511 43-354 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-35 2.6E-39 283.3 14.7 272 15-326 22-302 (313)
37 4fmz_A Internalin; leucine ric 100.0 6.7E-33 2.3E-37 274.6 28.9 307 129-533 40-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 1E-32 3.6E-37 277.6 28.7 311 75-439 43-353 (390)
39 4fmz_A Internalin; leucine ric 100.0 2.7E-32 9.1E-37 270.3 28.7 308 72-438 39-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 4.5E-32 1.5E-36 287.8 29.7 313 131-512 49-361 (597)
41 3oja_B Anopheles plasmodium-re 100.0 3E-32 1E-36 289.1 28.2 313 75-441 49-361 (597)
42 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 5E-34 248.6 28.8 270 197-531 53-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-30 1.7E-34 252.1 24.2 287 161-531 34-331 (332)
44 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-31 1.2E-35 257.6 15.3 251 244-534 50-306 (313)
45 1xku_A Decorin; proteoglycan, 100.0 4.5E-29 1.5E-33 245.1 30.3 289 77-410 31-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-34 2.6E-38 292.8 -5.2 392 101-533 3-440 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 6.1E-34 2.1E-38 293.6 -8.0 398 77-513 3-444 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 5.4E-29 1.8E-33 244.7 26.9 295 133-507 33-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 3.6E-31 1.2E-35 281.8 -3.8 386 75-511 110-528 (592)
50 2z80_A TOLL-like receptor 2, v 100.0 3.3E-28 1.1E-32 241.3 17.3 276 200-512 35-317 (353)
51 4fcg_A Uncharacterized protein 100.0 1E-28 3.4E-33 241.5 13.2 250 15-304 45-313 (328)
52 2z66_A Variable lymphocyte rec 100.0 1.4E-27 4.9E-32 231.8 21.1 282 223-544 10-298 (306)
53 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4.2E-32 232.2 19.5 246 248-534 11-262 (306)
54 3ogk_B Coronatine-insensitive 100.0 6E-31 2.1E-35 280.0 -5.8 425 71-549 67-543 (592)
55 1ozn_A Reticulon 4 receptor; N 100.0 5.5E-27 1.9E-31 225.2 21.8 270 247-562 14-285 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 235.6 26.3 246 247-534 57-304 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 2.9E-26 9.8E-31 234.2 25.4 226 269-533 65-292 (440)
58 4fcg_A Uncharacterized protein 99.9 5.2E-27 1.8E-31 229.4 18.4 235 243-533 80-314 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-28 6E-33 239.1 5.7 251 243-543 33-286 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-26 2E-30 217.9 21.1 249 245-531 33-285 (285)
61 2z80_A TOLL-like receptor 2, v 99.9 5.3E-26 1.8E-30 225.3 19.7 281 75-442 29-318 (353)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.1E-29 228.6 29.2 269 160-520 40-308 (622)
63 3zyj_A Leucine-rich repeat-con 99.9 9.7E-25 3.3E-29 222.9 26.7 245 136-411 46-291 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-25 1.2E-29 232.8 23.6 291 15-398 10-307 (622)
65 3zyi_A Leucine-rich repeat-con 99.9 1E-24 3.6E-29 223.4 26.6 204 195-411 98-302 (452)
66 3oja_A Leucine-rich immune mol 99.9 5.8E-26 2E-30 234.0 13.9 236 243-528 33-270 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7E-27 2.4E-31 227.8 6.4 249 246-544 12-262 (317)
68 1wwl_A Monocyte differentiatio 99.9 3.3E-27 1.1E-31 229.5 2.1 205 290-534 93-310 (312)
69 1wwl_A Monocyte differentiatio 99.9 2.6E-26 9E-31 223.2 7.2 255 192-510 39-310 (312)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 199.9 22.3 217 24-281 2-218 (270)
71 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.8E-28 200.2 20.6 203 269-535 17-220 (270)
72 2p1m_B Transport inhibitor res 99.9 5.6E-28 1.9E-32 257.3 -10.2 411 74-530 102-541 (594)
73 3oja_A Leucine-rich immune mol 99.9 2.4E-25 8.2E-30 229.4 9.6 230 265-544 31-262 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 1.2E-23 4E-28 200.9 19.7 210 268-538 28-242 (276)
75 2p1m_B Transport inhibitor res 99.9 4E-28 1.4E-32 258.4 -14.0 406 72-533 61-519 (594)
76 2z62_A TOLL-like receptor 4, v 99.9 8.8E-23 3E-27 194.8 21.2 206 244-511 28-239 (276)
77 3rfs_A Internalin B, repeat mo 99.9 3.5E-23 1.2E-27 196.9 17.2 208 290-544 39-246 (272)
78 1p9a_G Platelet glycoprotein I 99.9 2.4E-22 8.3E-27 192.5 20.2 202 264-509 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.5E-22 5.3E-27 192.4 16.6 210 242-522 39-248 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.9E-26 187.2 21.7 202 216-437 6-207 (290)
81 3m19_A Variable lymphocyte rec 99.9 2.3E-21 7.9E-26 182.0 19.4 178 293-509 15-192 (251)
82 2ca6_A RAN GTPase-activating p 99.9 4.9E-24 1.7E-28 213.9 -1.3 251 260-537 24-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.4E-28 208.7 1.0 257 249-535 3-299 (362)
84 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 185.2 18.8 195 264-510 37-231 (308)
85 2ast_B S-phase kinase-associat 99.9 1.5E-22 5.3E-27 199.1 6.7 235 268-542 70-315 (336)
86 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 179.7 15.0 195 293-530 32-236 (239)
87 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.4E-25 176.9 19.2 159 352-535 36-194 (251)
88 4glp_A Monocyte differentiatio 99.9 5.1E-22 1.7E-26 192.8 8.1 231 268-534 64-308 (310)
89 2ast_B S-phase kinase-associat 99.9 3.5E-22 1.2E-26 196.5 6.8 242 270-554 49-306 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 179.3 13.1 197 314-550 30-235 (239)
91 4glp_A Monocyte differentiatio 99.9 6.3E-21 2.1E-25 185.1 15.3 201 268-510 91-308 (310)
92 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 8E-25 180.5 18.3 195 240-486 37-231 (308)
93 2ca6_A RAN GTPase-activating p 99.8 5.5E-23 1.9E-27 206.3 -1.4 246 283-554 23-316 (386)
94 3goz_A Leucine-rich repeat-con 99.8 1.1E-22 3.7E-27 202.0 -0.6 121 352-488 168-300 (362)
95 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 163.8 14.8 161 352-544 29-189 (208)
96 2o6s_A Variable lymphocyte rec 99.8 2.6E-19 8.7E-24 162.9 14.9 143 347-521 48-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 172.4 19.1 220 269-529 31-255 (350)
98 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.6E-23 180.4 18.2 191 269-521 60-255 (571)
99 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.3E-23 170.1 18.0 237 271-550 12-255 (350)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.6E-23 158.7 15.8 154 354-535 14-168 (220)
101 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.5E-23 171.7 16.5 156 353-533 41-202 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.8E-23 157.7 16.3 133 352-509 33-165 (220)
103 3cvr_A Invasion plasmid antige 99.8 3.6E-18 1.2E-22 177.2 19.0 189 245-497 60-255 (571)
104 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.1E-23 164.5 15.8 171 289-509 43-213 (291)
105 3e6j_A Variable lymphocyte rec 99.8 5.7E-18 1.9E-22 156.2 16.3 134 351-510 40-173 (229)
106 1m9s_A Internalin B; cell inva 99.8 4.9E-18 1.7E-22 178.2 14.7 191 269-511 22-212 (605)
107 4ezg_A Putative uncharacterize 99.8 5.6E-18 1.9E-22 152.5 13.0 154 348-534 41-195 (197)
108 2v9t_B SLIT homolog 2 protein 99.8 1.8E-17 6.3E-22 151.7 16.3 153 354-534 14-166 (220)
109 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.4E-22 160.5 13.6 172 265-486 43-214 (291)
110 3e6j_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 149.9 17.6 157 352-537 20-176 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.6E-22 151.1 14.5 134 353-511 34-168 (220)
112 2xot_A Amphoterin-induced prot 99.7 3.3E-17 1.1E-21 162.2 16.0 139 349-509 62-202 (361)
113 1m9s_A Internalin B; cell inva 99.7 3.7E-17 1.3E-21 171.6 15.9 198 245-494 22-219 (605)
114 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 157.3 10.1 63 468-534 124-186 (263)
115 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.4E-22 155.2 5.9 145 267-437 18-162 (263)
116 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.3E-21 143.0 10.5 105 195-303 43-147 (197)
117 3sb4_A Hypothetical leucine ri 99.7 5.3E-17 1.8E-21 158.7 6.3 221 195-432 100-328 (329)
118 2ell_A Acidic leucine-rich nuc 99.7 4.2E-16 1.4E-20 136.4 11.2 137 374-538 23-164 (168)
119 1w8a_A SLIT protein; signaling 99.6 5.1E-16 1.7E-20 138.9 11.3 130 354-511 11-141 (192)
120 1dce_A Protein (RAB geranylger 99.6 4.9E-19 1.7E-23 184.8 -9.7 37 265-302 346-382 (567)
121 1w8a_A SLIT protein; signaling 99.6 7.3E-16 2.5E-20 137.8 11.2 132 378-537 11-143 (192)
122 3sb4_A Hypothetical leucine ri 99.6 4.8E-16 1.6E-20 151.9 9.6 268 195-527 48-328 (329)
123 1dce_A Protein (RAB geranylger 99.6 3.8E-18 1.3E-22 178.0 -6.0 197 289-539 346-552 (567)
124 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 130.7 10.2 128 375-529 17-149 (149)
125 4fs7_A Uncharacterized protein 99.6 4.7E-14 1.6E-18 141.3 23.6 312 71-435 65-376 (394)
126 4fdw_A Leucine rich hypothetic 99.6 5.1E-14 1.7E-18 140.4 23.0 269 195-532 112-382 (401)
127 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 133.4 8.2 132 352-509 25-160 (168)
128 4b8c_D Glucose-repressible alc 99.6 3E-16 1E-20 168.9 5.0 185 292-513 173-358 (727)
129 4fs7_A Uncharacterized protein 99.6 2.2E-13 7.5E-18 136.5 24.1 334 89-524 59-392 (394)
130 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.2E-19 128.6 14.3 128 354-510 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 128.2 12.4 130 353-510 9-138 (177)
132 4fdw_A Leucine rich hypothetic 99.6 3.1E-13 1E-17 134.8 24.0 240 158-436 111-356 (401)
133 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 127.3 8.1 129 351-505 17-149 (149)
134 4b8c_D Glucose-repressible alc 99.6 5.2E-15 1.8E-19 159.3 11.0 185 301-509 210-404 (727)
135 2o6r_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 123.3 14.4 131 378-536 10-140 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 9E-19 125.8 11.2 133 371-533 15-153 (176)
137 2wfh_A SLIT homolog 2 protein 99.5 2.1E-13 7.3E-18 121.7 14.5 128 296-440 14-141 (193)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.8E-14 9.7E-19 125.6 7.1 132 349-510 17-154 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.4E-21 142.2 -8.1 150 352-533 19-185 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 113.5 11.5 105 377-509 11-115 (170)
141 4gt6_A Cell surface protein; l 99.4 1E-10 3.6E-15 116.9 24.2 320 71-437 57-390 (394)
142 2r9u_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 111.1 11.9 104 378-509 15-118 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 8.5E-15 2.9E-19 131.7 -5.6 135 374-538 17-158 (198)
144 3un9_A NLR family member X1; l 99.4 3.7E-14 1.2E-18 140.1 -1.6 195 314-534 71-284 (372)
145 3g39_A Variable lymphocyte rec 99.3 1.3E-11 4.6E-16 107.5 12.3 108 317-441 11-118 (170)
146 3un9_A NLR family member X1; l 99.3 7.4E-14 2.5E-18 137.9 -3.6 188 292-509 72-283 (372)
147 4gt6_A Cell surface protein; l 99.3 7.2E-10 2.5E-14 110.8 25.2 133 368-532 258-390 (394)
148 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 106.1 11.9 106 318-440 15-120 (174)
149 4h09_A Hypothetical leucine ri 99.1 1.9E-08 6.5E-13 99.9 27.0 60 468-528 282-341 (379)
150 2ifg_A High affinity nerve gro 99.1 3.4E-10 1.2E-14 111.2 11.0 105 378-510 11-117 (347)
151 2ifg_A High affinity nerve gro 99.0 2E-09 6.8E-14 105.7 12.0 96 341-441 23-119 (347)
152 4h09_A Hypothetical leucine ri 99.0 9E-08 3.1E-12 95.0 22.6 317 127-520 40-356 (379)
153 2ra8_A Uncharacterized protein 98.9 2.5E-09 8.6E-14 104.5 7.7 160 347-531 168-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 105.9 3.2 145 367-534 164-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 4.5E-09 1.5E-13 92.7 4.4 67 467-533 88-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.6E-08 5.6E-13 89.0 3.7 122 370-510 31-165 (185)
157 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.1E-12 79.7 3.6 85 424-531 60-150 (176)
158 3rw6_A Nuclear RNA export fact 98.2 2E-06 7E-11 79.4 6.9 57 468-526 192-257 (267)
159 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.7E-11 80.0 5.4 68 469-538 167-238 (267)
160 3e4g_A ATP synthase subunit S, 98.1 7.9E-07 2.7E-11 76.1 2.8 85 351-437 61-151 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.1E-05 1E-09 67.6 5.0 68 466-533 92-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 4.4E-05 1.5E-09 66.6 3.7 44 466-509 120-170 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.00098 3.4E-08 54.2 6.1 36 497-532 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0075 2.6E-07 48.8 6.6 38 472-509 31-68 (130)
165 2lz0_A Uncharacterized protein 59.7 9.4 0.00032 28.6 3.9 42 366-408 11-52 (100)
166 2lz0_A Uncharacterized protein 54.5 32 0.0011 25.7 6.1 42 211-253 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-62 Score=533.34 Aligned_cols=513 Identities=29% Similarity=0.440 Sum_probs=349.9
Q ss_pred CCCCCCCCCCCCCcceeeeCCCCCeEEEECCCCCCccee---ecCCCCCcCcccccC-----------ccccCCCCCCCE
Q 048635 16 KMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGR---LENASGLFSLQYMQS-----------QFGLANLTNLTY 81 (562)
Q Consensus 16 ~~~~w~~~~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~---~~~~~~l~~l~~L~~-----------~~~l~~l~~L~~ 81 (562)
.++.|..+.+||.|.||+|+ .++|++|||++. .+.+. + .+.+.++++|+. +..|+++++|++
T Consensus 29 ~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~-~l~g~~~~l--~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~ 104 (768)
T 3rgz_A 29 LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK-PLNVGFSAV--SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104 (768)
T ss_dssp SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS-CCCEEHHHH--HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCE
T ss_pred cccCCCCCCCCcCCcceEEC-CCcEEEEECCCC-CcCCccCcc--ChhHhccCcccccCCcCCCcCCCchhhccCCCCCE
Confidence 78999888899999999998 689999999998 77776 4 345666666665 368899999999
Q ss_pred EecCCccCcccCCc--cCCCCCCCcEEeCCCCCCCCCCCccccCCCcccc-cCCCCCCEEEccCccCCCCCCccccccCC
Q 048635 82 LNLSHCGFTGEIPT--EISSLPRLVTLDLSSREPISGFSWRLGIPNFNFF-QNLKELRELYLDNVDLSGLGTERCKALSF 158 (562)
Q Consensus 82 L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 158 (562)
|+|++|.+++.+|. .++++++|++|++++|.+. ...+..+ .++++|++|++++|.++...+..+..+..
T Consensus 105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--------CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred EECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--------CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 99999999988888 8999999999999998742 3333333 67777777777777776554422222455
Q ss_pred CCCCCEEecccCCCCCccch-hcccccC-------CCC-cccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635 159 LPNLQVLNLSSCLLLGPINH-HLANLRS-------HSQ-FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY 229 (562)
Q Consensus 159 l~~L~~L~l~~n~~~~~~~~-~~~~l~~-------~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 229 (562)
+++|++|++++|.+.+..+. .+..+.. +.+ ...++++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 55566666655555443321 1111111 000 11255666677777777776666666666666666666666
Q ss_pred CCCCC----------------------CCCCCCCC-CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635 230 NPLLQ----------------------GSLPNFPK-NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPT 286 (562)
Q Consensus 230 ~~~~~----------------------~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 286 (562)
|.+.. .....+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|.
T Consensus 257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 65421 11222223 36677777777777766777777777777777777777766665
Q ss_pred c-CCCCCCCCeeeCcCCcccccCCC-CCC---------------------------CCCCCEEEcCCCCCc---------
Q 048635 287 S-TTNLTQLFHVDFSSNHFSGPIPS-FHE---------------------------SRNLNYLDLSSNNLN--------- 328 (562)
Q Consensus 287 ~-l~~l~~L~~L~l~~n~~~~~~~~-~~~---------------------------~~~L~~L~l~~n~l~--------- 328 (562)
. +..+++|++|++++|.+.+..|. +.. +++|++|++++|.++
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 66677777777777766533221 111 234444444444332
Q ss_pred ----------------------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635 329 ----------------------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVL 380 (562)
Q Consensus 329 ----------------------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 380 (562)
+.+++++|.+.+.+|.. +..+++|+.|++++|.+++.+|.++..+++|++|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 34455555555555554 5556667777777777776777777777788888
Q ss_pred EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh----------
Q 048635 381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG---------- 450 (562)
Q Consensus 381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---------- 450 (562)
++++|++++.+|.+++.+++|++|++++|++.+.. |..+..+++|++|++++|++.|.+|..+.....
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 88888887777777888888888888888887665 778888888899999988888888876544211
Q ss_pred ------------------------------------------------------------hhhhh-hhCCCccccccccc
Q 048635 451 ------------------------------------------------------------MRYQA-TNKRCRDQATEEMG 469 (562)
Q Consensus 451 ------------------------------------------------------------l~~~~-~~~~~~~~~~~~l~ 469 (562)
+.++. ..+.+.+.+|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 00111 14456677777777
Q ss_pred CcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCC
Q 048635 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVL 543 (562)
Q Consensus 470 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 543 (562)
.+++|+.|+|++|.+++.+|..|+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+..++.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 88888888888888887788888888888888888888888888888888888888888888888888765544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-50 Score=436.49 Aligned_cols=445 Identities=27% Similarity=0.371 Sum_probs=324.0
Q ss_pred CCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccc
Q 048635 74 ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERC 153 (562)
Q Consensus 74 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 153 (562)
.++++|++|++++|.+++.+|. ++++++|++|++++|.+ ....+..+.++++|++|++++|.+....+.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l--------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-- 265 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL--------SGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC--------CSCHHHHTTTCSSCCEEECCSSCCEESCCC--
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC--------CCcccHHHhcCCCCCEEECCCCcccCccCc--
Confidence 3445555555555555444443 55555555555555542 233444555555555555555555433221
Q ss_pred cccCCCCCCCEEecccCCCCCccchhcccc-cCC------------CCcccccCCCCCCEEEccCCcCcccCChh-hhCC
Q 048635 154 KALSFLPNLQVLNLSSCLLLGPINHHLANL-RSH------------SQFFFVANLLNLTNLDLSQCDLRGKYPEK-ILQV 219 (562)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~~------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l 219 (562)
..+++|++|++++|.+.+..|..+... +.+ ..+..++++++|++|++++|.+.+.+|.. +..+
T Consensus 266 ---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 266 ---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp ---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred ---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 145555555555555554444443322 110 11344556666677777766666555544 6666
Q ss_pred CCccEEeccCCCCCCCCCCCCCCCC-CCCEEEccCCcCCCCCCCCCcC--CCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635 220 STLETLDLSYNPLLQGSLPNFPKNS-YLQNLNLANTSFSGILPDPIGI--LKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296 (562)
Q Consensus 220 ~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (562)
++|++|++++|.+.......+..++ +|+.|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 6777777766654333333444444 6777777777776666666655 677888888888888788888888888999
Q ss_pred eeCcCCcccccCC-CCCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCc
Q 048635 297 VDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362 (562)
Q Consensus 297 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 362 (562)
|++++|.+.+..| .+..+++|++|++++|.+. +.+++++|++.+.+|.. +..+++|+.|++++|+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNR 501 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCc
Confidence 9999888886554 4578888999999888776 56888889998888887 8899999999999999
Q ss_pred ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecC--------------------------
Q 048635 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHIS-------------------------- 416 (562)
Q Consensus 363 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-------------------------- 416 (562)
+++.+|.++..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+..+
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 999999999999999999999999999899999999999999999998874321
Q ss_pred ------------------------------------------CCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhh
Q 048635 417 ------------------------------------------YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ 454 (562)
Q Consensus 417 ------------------------------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~ 454 (562)
.+..+..+++|++||+++|+++|.+|..+.....+..+
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 12234557889999999999999999887666666655
Q ss_pred hh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCc-c
Q 048635 455 AT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-L 532 (562)
Q Consensus 455 ~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l 532 (562)
.. ++.+.+.+|..++.+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|+ +
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchh
Confidence 54 77899999999999999999999999999999999999999999999999999999975 445667777788997 4
Q ss_pred ee
Q 048635 533 VG 534 (562)
Q Consensus 533 ~~ 534 (562)
.|
T Consensus 741 cg 742 (768)
T 3rgz_A 741 CG 742 (768)
T ss_dssp ES
T ss_pred cC
Confidence 54
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-49 Score=420.01 Aligned_cols=438 Identities=21% Similarity=0.219 Sum_probs=248.1
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
..+++||++++ .+.... +..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus 33 ~~l~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---- 93 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQ--------------NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL---- 93 (606)
T ss_dssp TTCCEEECTTC-CCSEEC--------------TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred CcCcEEEccCC-ccCcCC--------------hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc----
Confidence 57999999999 777665 45677777777777777777766677777777777777777764
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
....+..|+++++|++|++++|.++.+++ ..+..+++|++|++++|.+.+.....+ ..+++
T Consensus 94 ----~~~~~~~~~~l~~L~~L~L~~n~i~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~------------~~l~~ 154 (606)
T 3t6q_A 94 ----IFMAETALSGPKALKHLFFIQTGISSIDF---IPLHNQKTLESLYLGSNHISSIKLPKG------------FPTEK 154 (606)
T ss_dssp ----SEECTTTTSSCTTCCEEECTTSCCSCGGG---SCCTTCTTCCEEECCSSCCCCCCCCTT------------CCCTT
T ss_pred ----cccChhhhcccccccEeeccccCcccCCc---chhccCCcccEEECCCCcccccCcccc------------cCCcc
Confidence 24445667777777777777777766543 345667777777777777665332211 12445
Q ss_pred CCEEEccCCcCcccCChhhhCCCCcc--EEeccCCCCCCCCCCCCCC---------------------------------
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLE--TLDLSYNPLLQGSLPNFPK--------------------------------- 242 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~--------------------------------- 242 (562)
|++|++++|.+++..+..+..+++|+ .|++++|.+.......+..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 66666666665555555555555555 5555555543322222111
Q ss_pred ----------------C--CCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635 243 ----------------N--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304 (562)
Q Consensus 243 ----------------~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 304 (562)
+ .+++.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc
Confidence 0 14555555555555555555555666666666666555 4455555566666666666655
Q ss_pred cccCC-CCCCCCCCCEEEcCCCCCc--------------ceEECCCCcCcccC--CccccCCCCCcCEEECcCCcccccC
Q 048635 305 SGPIP-SFHESRNLNYLDLSSNNLN--------------GVLNLGRNNLNGTL--SDIIFPRNCGLHILDLSGNQLQGVV 367 (562)
Q Consensus 305 ~~~~~-~~~~~~~L~~L~l~~n~l~--------------~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (562)
.+..+ .+..+++|++|++++|.+. +.+++++|.+.+.. +.. +..+++|++|++++|.+.+..
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEEC
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCC
Confidence 54432 3455556666666555433 12222222222211 222 445555555555555555555
Q ss_pred CccCCCCCCCCEEEcccCCCCCcchH-HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635 368 PKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS 446 (562)
Q Consensus 368 ~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 446 (562)
+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+...
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---- 466 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNI---- 466 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEE----
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCcccc----
Confidence 55555555555555555555543322 2455555555555555554433 4445555555555555555533110
Q ss_pred hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEe
Q 048635 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 526 (562)
Q Consensus 447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 526 (562)
..+..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|+.+..+++| +|+
T Consensus 467 ----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 467 ----------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp ----------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred ----------------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 112345556666666666666665555566666666666666666666666666666666 666
Q ss_pred CcCCcceecCCC
Q 048635 527 LSYNNLVGQIPT 538 (562)
Q Consensus 527 l~~n~l~~~~p~ 538 (562)
+++|++++.+|.
T Consensus 530 L~~N~l~~~~~~ 541 (606)
T 3t6q_A 530 LASNHISIILPS 541 (606)
T ss_dssp CCSSCCCCCCGG
T ss_pred CcCCcccccCHh
Confidence 666666655444
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.6e-50 Score=426.60 Aligned_cols=437 Identities=19% Similarity=0.288 Sum_probs=348.8
Q ss_pred CCCCCCCCCCCCCc---ceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCc--
Q 048635 16 KMSQWSDSTNCCDW---TGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFT-- 90 (562)
Q Consensus 16 ~~~~w~~~~~~c~w---~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~-- 90 (562)
..+.|+.+.+||.| .||+|+..++|+.|+|+++ .+.+.+ |.+|+++++|++|+|++|.+.
T Consensus 56 ~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~-~l~g~l--------------p~~l~~L~~L~~L~Ls~N~~~~~ 120 (636)
T 4eco_A 56 PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF-GASGRV--------------PDAIGQLTELEVLALGSHGEKVN 120 (636)
T ss_dssp --CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTS-CCEEEE--------------CGGGGGCTTCCEEESCCGGGGGT
T ss_pred cCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCc-ccCCcC--------------ChHHhcCccceEEECcCCccccC
Confidence 34689988899999 9999988899999999999 899998 789999999999999999762
Q ss_pred ----c---------------------------cCCccCC-------------------CCCCCcEEeCC--CCCCCCCCC
Q 048635 91 ----G---------------------------EIPTEIS-------------------SLPRLVTLDLS--SREPISGFS 118 (562)
Q Consensus 91 ----~---------------------------~~~~~~~-------------------~l~~L~~L~l~--~n~~~~~~~ 118 (562)
+ ..|..+. ....++.+.+. .|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~------ 194 (636)
T 4eco_A 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN------ 194 (636)
T ss_dssp CCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE------
T ss_pred CccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC------
Confidence 1 0111111 11112222221 122
Q ss_pred ccccCCCcccccCCCCCCEEEccCccCCC------------------CCCccccccC--CCCCCCEEecccCCCCCccch
Q 048635 119 WRLGIPNFNFFQNLKELRELYLDNVDLSG------------------LGTERCKALS--FLPNLQVLNLSSCLLLGPINH 178 (562)
Q Consensus 119 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------------~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~ 178 (562)
+.. +|..++++++|++|++++|.++. ++ ..+. ++++|++|++++|.+.+..|.
T Consensus 195 --l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip----~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 195 --ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp --EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred --Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc----hhhhhcccCCCCEEEecCCcCCccChH
Confidence 334 68889999999999999999988 54 4677 899999999999999888765
Q ss_pred hcccccCCCCcccccCCCCCCEEEccCCc-Ccc-cCChhhhCC------CCccEEeccCCCCCCCCCC---CCCCCCCCC
Q 048635 179 HLANLRSHSQFFFVANLLNLTNLDLSQCD-LRG-KYPEKILQV------STLETLDLSYNPLLQGSLP---NFPKNSYLQ 247 (562)
Q Consensus 179 ~~~~l~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~L~~~~~~~~~~~---~~~~~~~L~ 247 (562)
. ++++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+. .++ .+..+++|+
T Consensus 268 ~------------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 268 F------------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLG 333 (636)
T ss_dssp T------------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCC
T ss_pred H------------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCC
Confidence 5 4456679999999998 887 788888776 89999999999876 444 478899999
Q ss_pred EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCC-CCeeeCcCCcccccCCCCCCC--CCCCEEEcCC
Q 048635 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ-LFHVDFSSNHFSGPIPSFHES--RNLNYLDLSS 324 (562)
Q Consensus 248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~ 324 (562)
+|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+...+..+... ++|++|++++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence 99999999997788 8889999999999999998 78888999999 999999999998554444443 4899999988
Q ss_pred CCCcceEECCCCcCcccCCccccC-------CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFP-------RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 397 (562)
|.+. +.+|.. +. .+++|+.|++++|.+++..+..+..+++|++|++++|+++...+..+..
T Consensus 412 N~l~-----------~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 412 NEIG-----------SVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SCTT-----------TTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred CcCC-----------Ccchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 8776 344544 44 6678999999999999655555667899999999999998644434443
Q ss_pred CC-------CCCEEEccCcccceecCCCCCCC--CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccc
Q 048635 398 AS-------SLQVLVLRSNNFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM 468 (562)
Q Consensus 398 l~-------~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 468 (562)
.. +|++|++++|.+.. ++..+. .+++|++|++++|+++ + +|..+
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~-----------------------~-ip~~~ 532 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTK---LSDDFRATTLPYLVGIDLSYNSFS-----------------------K-FPTQP 532 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCB---CCGGGSTTTCTTCCEEECCSSCCS-----------------------S-CCCGG
T ss_pred ccccccccCCccEEECcCCcCCc---cChhhhhccCCCcCEEECCCCCCC-----------------------C-cChhh
Confidence 33 89999999999983 366666 8999999999999983 3 66778
Q ss_pred cCcCCCCEEeC------cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635 469 GRFKSLYALNM------SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 469 ~~l~~L~~L~L------s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 538 (562)
..+++|+.|++ ++|.+.+.+|..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++....+.
T Consensus 533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence 88999999999 567788899999999999999999999995 7887765 8999999999998755443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-48 Score=416.48 Aligned_cols=487 Identities=22% Similarity=0.176 Sum_probs=294.8
Q ss_pred CCeEEEECCCCCCcceeec-CCCCCcCcccccC---------ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEe
Q 048635 38 GHVIGLDLSAEPILIGRLE-NASGLFSLQYMQS---------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~-~~~~l~~l~~L~~---------~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 107 (562)
.++++||++++ .+.+... .+..+.++++|.. +..|+++++|++|++++|.+++..+.+|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 57888888888 5554431 2333334444333 44566777788888888777754445677788888888
Q ss_pred CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccc----
Q 048635 108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL---- 183 (562)
Q Consensus 108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l---- 183 (562)
+++|.+ ....+..|+++++|++|++++|.++..++ ..+..+++|++|++++|.+++..+..+..+
T Consensus 104 L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 104 LMSNSI--------QKIKNNPFVKQKNLITLDLSHNGLSSTKL---GTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp CCSSCC--------CCCCSCTTTTCTTCCEEECCSSCCSCCCC---CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred CCCCcc--------CccChhHccccCCCCEEECCCCcccccCc---hhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 877764 23444567777777777777777766554 345667777777777777666555433211
Q ss_pred -cC-------CCC--ccccc---------------------------CCCCCCEEEccCCcCcccCChhhhCCCC--ccE
Q 048635 184 -RS-------HSQ--FFFVA---------------------------NLLNLTNLDLSQCDLRGKYPEKILQVST--LET 224 (562)
Q Consensus 184 -~~-------~~~--~~~l~---------------------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~ 224 (562)
.. +.+ +..+. ..++|++|++++|.+.+..+..+..++. |+.
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 11 000 11111 1256777778888777777777776644 888
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccc-----cCC----ccCCCCCCCC
Q 048635 225 LDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-----PIP----TSTTNLTQLF 295 (562)
Q Consensus 225 L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~l~~l~~L~ 295 (562)
|++++|.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|...+ .+| ..+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 8888887766555667778888888888888887777778888888888887764432 122 2566778888
Q ss_pred eeeCcCCcccccCCC-CCCCCCCCEEEcCCCCCc-----------------ceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635 296 HVDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLN-----------------GVLNLGRNNLNGTLSDIIFPRNCGLHILD 357 (562)
Q Consensus 296 ~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~-----------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 357 (562)
+|++++|.+.+..+. +..+++|++|++++|.+. +.+++++|++.+..|.. +..+++|+.|+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLD 411 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCEEe
Confidence 888888888775543 577888888888877521 35666777776544443 66777777777
Q ss_pred CcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635 358 LSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436 (562)
Q Consensus 358 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 436 (562)
+++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+......+..+..+++|++|++++|+
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 77777765443 56666777777777777666555555556666666666666555333335555566666666666666
Q ss_pred CCCcCChhhhhhhhhhhhhh-hCCCccc--------ccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635 437 FGGRLSQKCSTTLGMRYQAT-NKRCRDQ--------ATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 507 (562)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~--------~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~ 507 (562)
+++..+..+.....++.+.. .+.+.+. .+..+..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 55433322222222222222 1112111 11124455555555555555553333345555555555555555
Q ss_pred ccccChhhhcCCCCCCeEeCcCCcceecCC
Q 048635 508 LSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 508 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 537 (562)
+++..+..+..+++|++|++++|++++..|
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 554444444555555555555555554433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-47 Score=404.41 Aligned_cols=436 Identities=23% Similarity=0.237 Sum_probs=297.3
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.... +..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.
T Consensus 57 ~~L~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--- 118 (606)
T 3t6q_A 57 INLTFLDLTRC-QIYWIH--------------EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS--- 118 (606)
T ss_dssp TTCSEEECTTC-CCCEEC--------------TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---
T ss_pred ccceEEECCCC-ccceeC--------------hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc---
Confidence 67999999999 666655 556777777888888887777777777777788888888777642
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
...+..++++++|++|++++|.++.++. ..+..+++|++|++++|.+.+..+..++.+..
T Consensus 119 -----~l~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------ 178 (606)
T 3t6q_A 119 -----SIDFIPLHNQKTLESLYLGSNHISSIKL---PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ------------ 178 (606)
T ss_dssp -----CGGGSCCTTCTTCCEEECCSSCCCCCCC---CTTCCCTTCCEEECCSSCCCEECHHHHHTTTT------------
T ss_pred -----cCCcchhccCCcccEEECCCCcccccCc---ccccCCcccCEEEcccCcccccChhhhhhhcc------------
Confidence 3334557777777777777777776543 23334777777777777776665554443332
Q ss_pred CC--EEEccCCcCcccCChhhhC-------------------------------------------------C--CCccE
Q 048635 198 LT--NLDLSQCDLRGKYPEKILQ-------------------------------------------------V--STLET 224 (562)
Q Consensus 198 L~--~L~l~~~~~~~~~~~~l~~-------------------------------------------------l--~~L~~ 224 (562)
|+ +|++++|.+++..+..+.. + .+|+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 33 3333333333222221110 0 03444
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635 225 LDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304 (562)
Q Consensus 225 L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 304 (562)
|++++|.+.......+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 444444443333333444445555555555444 3344444445555555555554444444444445555555555444
Q ss_pred cccCC--CCCCCCCCCEEEcCCCCCc---------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC
Q 048635 305 SGPIP--SFHESRNLNYLDLSSNNLN---------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367 (562)
Q Consensus 305 ~~~~~--~~~~~~~L~~L~l~~n~l~---------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (562)
.+..+ .+..+++|++|++++|.++ +.+++++|.+.+..|.. +..+++|+.|++++|.+.+..
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcc
Confidence 43222 1344444555555444433 23444444444444444 889999999999999998765
Q ss_pred Cc-cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccccee-cCCCCCCCCCCCCCEEEcCCCcCCCcCChhh
Q 048635 368 PK-SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH-ISYPRNNVSWPLLQIVDFASNKFGGRLSQKC 445 (562)
Q Consensus 368 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 445 (562)
+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ...+..+..+++|++|++++|+++
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~------- 489 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS------- 489 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-------
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-------
Confidence 54 488999999999999999998888999999999999999999763 222466889999999999999984
Q ss_pred hhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeE
Q 048635 446 STTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 525 (562)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 525 (562)
+..|..+..+++|++|++++|++++..|+.+.+++.| .|++++|++++..|..+..+++|++|
T Consensus 490 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 490 ----------------SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp ----------------EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred ----------------ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 4556778899999999999999999999999999999 99999999999999999999999999
Q ss_pred eCcCCcceecCC
Q 048635 526 NLSYNNLVGQIP 537 (562)
Q Consensus 526 ~l~~n~l~~~~p 537 (562)
++++|++.+..+
T Consensus 553 ~l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 NLRQNPLDCTCS 564 (606)
T ss_dssp ECTTCCEECSGG
T ss_pred eCCCCCccccCC
Confidence 999999997655
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.1e-48 Score=418.19 Aligned_cols=425 Identities=20% Similarity=0.255 Sum_probs=305.3
Q ss_pred ceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEec-CCccCcccCCccC-----------
Q 048635 30 TGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNL-SHCGFTGEIPTEI----------- 97 (562)
Q Consensus 30 ~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~L-s~n~i~~~~~~~~----------- 97 (562)
.||.|+..++|+.|+|+++ .+.+.+ |.+|+++++|++|+| ++|.+++..|...
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~-~L~G~i--------------p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~ 379 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGF-GAKGRV--------------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379 (876)
T ss_dssp TTEEECTTSCEEEEECTTT-CCEEEE--------------CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred CceEecCCCCEEEEECccC-CCCCcC--------------chHHhccccceEeeecccccccccccccccccccccchhH
Confidence 9999998899999999999 999998 889999999999999 8887766522110
Q ss_pred ----------------------------------------CCCCCCcEEeCCC--CCCCCCCCccccCCCcccccCCCCC
Q 048635 98 ----------------------------------------SSLPRLVTLDLSS--REPISGFSWRLGIPNFNFFQNLKEL 135 (562)
Q Consensus 98 ----------------------------------------~~l~~L~~L~l~~--n~~~~~~~~~~~~~~~~~~~~l~~L 135 (562)
.....++.+.+.. |. +.. +|..|+++++|
T Consensus 380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~--------L~~-IP~~l~~L~~L 450 (876)
T 4ecn_A 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--------ITF-ISKAIQRLTKL 450 (876)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE--------EEE-ECGGGGGCTTC
T ss_pred HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc--------ccc-hhHHHhcCCCC
Confidence 0111222222221 22 223 57778888888
Q ss_pred CEEEccCccCCC------------------CCCccccccC--CCCCCCEEecccCCCCCccchhcccccCCCCcccccCC
Q 048635 136 RELYLDNVDLSG------------------LGTERCKALS--FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANL 195 (562)
Q Consensus 136 ~~L~l~~~~l~~------------------~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l 195 (562)
++|++++|.++. +| ..+. .+++|++|++++|.+.+..|..+ .++
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP----~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l------------~~L 514 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EELSWSNLKDLTDVELYNCPNMTQLPDFL------------YDL 514 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEESCTTCCSCCGGG------------GGC
T ss_pred CEEECcCCcCCCCcccccccccccccccccCC----hhhhhccCCCCCEEECcCCCCCccChHHH------------hCC
Confidence 888888888877 44 3555 78888888888888777766544 445
Q ss_pred CCCCEEEccCCc-Ccc-cCChhhhCCC-------CccEEeccCCCCCCCCCCC---CCCCCCCCEEEccCCcCCCCCCCC
Q 048635 196 LNLTNLDLSQCD-LRG-KYPEKILQVS-------TLETLDLSYNPLLQGSLPN---FPKNSYLQNLNLANTSFSGILPDP 263 (562)
Q Consensus 196 ~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~ 263 (562)
++|++|++++|. +++ .+|..+..++ +|+.|++++|.+. .++. +..+++|+.|++++|.++ .+| .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 568888888887 776 6676555444 8888888888765 3443 677888888888888887 566 7
Q ss_pred CcCCCCCcEEEccCCcccccCCccCCCCCC-CCeeeCcCCcccccCCCCCCCC--CCCEEEcCCCCCcceEECCCCcCcc
Q 048635 264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQ-LFHVDFSSNHFSGPIPSFHESR--NLNYLDLSSNNLNGVLNLGRNNLNG 340 (562)
Q Consensus 264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~l~~~l~l~~~~~~~ 340 (562)
+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+...+..+...+ +|+.|++++|.+. +
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~-----------g 658 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-----------S 658 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT-----------T
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC-----------C
Confidence 788888888888888887 67777888887 8888888888874443444433 4888888877765 2
Q ss_pred cCCccc--cC--CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc-------CCCCCEEEccCc
Q 048635 341 TLSDII--FP--RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN-------ASSLQVLVLRSN 409 (562)
Q Consensus 341 ~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-------l~~L~~L~l~~n 409 (562)
.+|... +. ..++|+.|++++|.++...+..+..+++|+.|+|++|++....+..+.. +++|++|++++|
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence 222210 11 3347888888888888433333457788888888888887533333322 238888888888
Q ss_pred ccceecCCCCCCC--CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC------
Q 048635 410 NFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH------ 481 (562)
Q Consensus 410 ~l~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~------ 481 (562)
++. .++..+. .+++|+.|++++|++. + +|..+..+++|+.|+|++
T Consensus 739 ~L~---~lp~~l~~~~l~~L~~L~Ls~N~L~-----------------------~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 739 KLT---SLSDDFRATTLPYLSNMDVSYNCFS-----------------------S-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CCC---CCCGGGSTTTCTTCCEEECCSSCCS-----------------------S-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred CCc---cchHHhhhccCCCcCEEEeCCCCCC-----------------------c-cchhhhcCCCCCEEECCCCCCccc
Confidence 887 3356665 7888888888888873 2 566677888888888876
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCC
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK 540 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 540 (562)
|.+.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 777778888899999999999999999 47787655 689999999998876555443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-47 Score=407.83 Aligned_cols=440 Identities=22% Similarity=0.209 Sum_probs=230.1
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.+.. +..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus 32 ~~l~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l---- 92 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILK--------------SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI---- 92 (606)
T ss_dssp TTCCEEECTTS-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred CCcCEEECCCC-CcCEeC--------------hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc----
Confidence 67999999999 776665 34566666666666666666666666666666666666666663
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCC-ccchhcccccCCCCcccccCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLG-PINHHLANLRSHSQFFFVANLL 196 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~~~~~~~l~~l~ 196 (562)
....|..|+++++|++|++++|.++.+++ ..+..+++|++|++++|.+.+ ..|.. +++++
T Consensus 93 ----~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~------------~~~l~ 153 (606)
T 3vq2_A 93 ----QSFSPGSFSGLTSLENLVAVETKLASLES---FPIGQLITLKKLNVAHNFIHSCKLPAY------------FSNLT 153 (606)
T ss_dssp ----CCCCTTSSTTCTTCCEEECTTSCCCCSSS---SCCTTCTTCCEEECCSSCCCCCCCCGG------------GGTCT
T ss_pred ----cccChhhcCCcccCCEEEccCCccccccc---cccCCCCCCCEEeCCCCcccceechHh------------HhhcC
Confidence 23445666666666666666666666554 245666666666666666654 22333 33344
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCc----cEEeccCCCCCCCCCCCC--------------------------------
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTL----ETLDLSYNPLLQGSLPNF-------------------------------- 240 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~-------------------------------- 240 (562)
+|++|++++|.+++..+..+..+.+| ..|++++|.+.......+
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 55555555555554444444333322 244554444332222222
Q ss_pred ------------------------------------------------CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcE
Q 048635 241 ------------------------------------------------PKNSYLQNLNLANTSFSGILPDPIGILKYLTR 272 (562)
Q Consensus 241 ------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 272 (562)
..+++|+.|++++|.+.. +| .+..+++|++
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~ 311 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQS 311 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSE
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCE
Confidence 223444444444444432 22 3444445555
Q ss_pred EEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc--CCccccCCC
Q 048635 273 VDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT--LSDIIFPRN 350 (562)
Q Consensus 273 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~--~~~~~~~~~ 350 (562)
|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.++ +. ++.. +..+
T Consensus 312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~-----------~~~~~~~~-~~~~ 375 (606)
T 3vq2_A 312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALS-----------FSGCCSYS-DLGT 375 (606)
T ss_dssp EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEE-----------EEEECCHH-HHCC
T ss_pred EEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccC-----------CCcchhhh-hccC
Confidence 55555555 2333 22 4455555555555333222 3334455555555555443 22 1222 4455
Q ss_pred CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429 (562)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 429 (562)
++|+.|++++|.+++ +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 452 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNT 452 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc--hhhhcCCCCCCE
Confidence 556666666655553 33555555666666666665555444 34555566666666666555433 455555566666
Q ss_pred EEcCCCcCCCc-CChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635 430 VDFASNKFGGR-LSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 507 (562)
Q Consensus 430 L~l~~n~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~ 507 (562)
|++++|++.+. .|..+.....++.+.. .+.+.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 66666655332 1111111111111111 112233444455555666666666666665555556666666666666666
Q ss_pred ccccChhhhcCCC-CCCeEeCcCCcceecCC
Q 048635 508 LSGKIPAQLASLN-FLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 508 l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p 537 (562)
++ .+|..+..++ +|++|++++|++.+..+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 65 4444455554 36666666666554443
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-45 Score=400.20 Aligned_cols=497 Identities=21% Similarity=0.191 Sum_probs=375.6
Q ss_pred CCeEEEECCCCCCcceee-cCCCCCcCcccccC--------c-cccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEe
Q 048635 38 GHVIGLDLSAEPILIGRL-ENASGLFSLQYMQS--------Q-FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~-~~~~~l~~l~~L~~--------~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 107 (562)
.++++||++++ .+.+.. +.+..+.+|++|.. + ..|+++++|++|++++|.+++..|.+|+++++|++|+
T Consensus 49 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 57899999988 655543 11223344444443 3 3689999999999999999977778899999999999
Q ss_pred CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCC-
Q 048635 108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSH- 186 (562)
Q Consensus 108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~- 186 (562)
+++|.+. ...+..+.++++|++|++++|.++..++..+ ....+++|++|++++|.+.+..+..+..+..+
T Consensus 128 Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 128 LSHNGLS--------STKLGTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CCSSCCS--------CCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred CCCCccc--------ccCchhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 9999853 5566778899999999999999887765321 12356889999999998888777655443221
Q ss_pred ------------------------------------C--CcccccCCC--CCCEEEccCCcCcccCChhhhCCCCccEEe
Q 048635 187 ------------------------------------S--QFFFVANLL--NLTNLDLSQCDLRGKYPEKILQVSTLETLD 226 (562)
Q Consensus 187 ------------------------------------~--~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 226 (562)
. .+.++..++ +|++|++++|.+++..+..+..+++|+.|+
T Consensus 199 ~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 0 133455554 499999999999988888899999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEccCCcCCC-----CCC----CCCcCCCCCcEEEccCCcccccCCccCCCCCCCCee
Q 048635 227 LSYNPLLQGSLPNFPKNSYLQNLNLANTSFSG-----ILP----DPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHV 297 (562)
Q Consensus 227 L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 297 (562)
+++|.+.......+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 99998766666678888889999988765432 122 267778889999999998887777778888888888
Q ss_pred eCcCCcccccC-C--CCC--CCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECc
Q 048635 298 DFSSNHFSGPI-P--SFH--ESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLS 359 (562)
Q Consensus 298 ~l~~n~~~~~~-~--~~~--~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 359 (562)
++++|.+.... + .+. ..++|+.|++++|.++ +.+++++|.+.+.+|...+.++++|+.|+++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 88888754311 1 121 2257888888887765 4677888888778887678899999999999
Q ss_pred CCcccccCCccCCCCCCCCEEEcccCCCC--CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 360 GNQLQGVVPKSLANCNMLQVLDFRNNHIS--DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 360 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+|++.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCc
Confidence 99988888888888899999999998876 456777888889999999999888655 66678888999999999988
Q ss_pred CCcCChh-------hhhhh-hhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635 438 GGRLSQK-------CSTTL-GMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508 (562)
Q Consensus 438 ~~~~~~~-------~~~~~-~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l 508 (562)
++..+.. .+..+ .+..+.. .+.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 6542221 11111 3333333 3444533344689999999999999999977777789999999999999999
Q ss_pred cccChhhhc-CCCCCCeEeCcCCcceecCCCCCCCCccc
Q 048635 509 SGKIPAQLA-SLNFLSVLNLSYNNLVGQIPTAKHVLPNF 546 (562)
Q Consensus 509 ~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 546 (562)
++..|..+. .+++|++|++++|++.+..+....+..++
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 988888887 78999999999999988776433333333
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=411.07 Aligned_cols=481 Identities=21% Similarity=0.215 Sum_probs=281.3
Q ss_pred CCcceeeeCCCCCeEEEECCCCCCcceee-cCCCCCcCcccccC----------ccccCCCCCCCEEecCCccCcccCCc
Q 048635 27 CDWTGVDCDEAGHVIGLDLSAEPILIGRL-ENASGLFSLQYMQS----------QFGLANLTNLTYLNLSHCGFTGEIPT 95 (562)
Q Consensus 27 c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~-~~~~~l~~l~~L~~----------~~~l~~l~~L~~L~Ls~n~i~~~~~~ 95 (562)
|.|..+.+ ...++++|||++| .+.... ..+..+.+|++|.. +..|.++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56777777 5588999999999 666654 22333333333332 34466666666666666666656666
Q ss_pred cCCCCCCCcEEeCCCCCCCCCCCccccCCCcc--cccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCC
Q 048635 96 EISSLPRLVTLDLSSREPISGFSWRLGIPNFN--FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLL 173 (562)
Q Consensus 96 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 173 (562)
+|.++++|++|++++|.+. ...+. .|.++++|++|++++|.+++..+. ..+.++++|++|++++|.+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCC
T ss_pred HccCCcccCEeeCcCCCCC--------cccccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCC
Confidence 6666666666666666532 21222 356666666666666666554321 34556666666666666666
Q ss_pred CccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCC------ccEEeccCCCCCCCCCCCC-------
Q 048635 174 GPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVST------LETLDLSYNPLLQGSLPNF------- 240 (562)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~L~~~~~~~~~~~~~------- 240 (562)
+..+..+..+. .++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.......+
T Consensus 162 ~~~~~~l~~l~----------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 162 LVCEHELEPLQ----------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCSGGGHHHH----------HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred eeCHHHccccc----------CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 55544443321 045666666666666555555444443 6777776664322111111
Q ss_pred -----------------------------CC--CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCC
Q 048635 241 -----------------------------PK--NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTT 289 (562)
Q Consensus 241 -----------------------------~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 289 (562)
.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 11 14566666666666555555566666666666666666655555566
Q ss_pred CCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635 290 NLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368 (562)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (562)
.+++|++|++++|.+.+..+ .+..+++|++|++++|.+. .++...|..+++|+.|++++|.+++.
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~------------~~~~~~~~~l~~L~~L~Ls~N~l~~i-- 377 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA------------IIQDQTFKFLEKLQTLDLRDNALTTI-- 377 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC------------CCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC------------ccChhhhcCCCCCCEEECCCCCCCcc--
Confidence 66666666666666654422 3455666666666666554 44444466666677777766666532
Q ss_pred ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448 (562)
Q Consensus 369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 448 (562)
..+++|+.|++++|++... |.. ..+++.|++++|++.+.. ....+..+++|++|++++|++++..+...+..
T Consensus 378 ---~~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLD-ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ---SSCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSST-THHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred ---cCCCCcchhccCCCCcccc-ccc---ccccceeecccCccccCc-hhhhhhcCCccceeeCCCCccccccccccccc
Confidence 1244555555555554431 111 223333333333333211 01112245555555555555543322211111
Q ss_pred -hhhhhhhh-hCCCc-----ccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCC
Q 048635 449 -LGMRYQAT-NKRCR-----DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF 521 (562)
Q Consensus 449 -~~l~~~~~-~~~~~-----~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 521 (562)
..+..+.. .+.+. +..+..+..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 12222211 11121 34456688889999999999999988888899999999999999999976666555 78
Q ss_pred CCeEeCcCCcceecCCCCCCCCccccchHHHH
Q 048635 522 LSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQL 553 (562)
Q Consensus 522 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~l 553 (562)
|++|++++|++++.+|..+..+..+++.+|.+
T Consensus 528 L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CCEEEEEEECCCCCCSCCCSSCCEEEEEEECC
T ss_pred ccEEECCCCcCCCCChhHhCCcCEEEecCCCc
Confidence 99999999999999998888888888777654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=391.00 Aligned_cols=434 Identities=22% Similarity=0.255 Sum_probs=290.8
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.+++.||++++ .+.... +..|.++++|++|++++|++++..+..|.++++|++|++++|.+.
T Consensus 28 ~~l~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~--- 89 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLG--------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--- 89 (570)
T ss_dssp SSCCEEECCSC-CCCEEC--------------TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---
T ss_pred ccccEEEccCC-ccCccC--------------hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC---
Confidence 57999999999 666654 446778888888888888888777777888888888888888742
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLL 196 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~ 196 (562)
...+..|+++++|++|++++|.++.++. ..++.+++|++|++++|.+.+. .|.. +++++
T Consensus 90 -----~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~------------~~~l~ 149 (570)
T 2z63_A 90 -----SLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEY------------FSNLT 149 (570)
T ss_dssp -----EECTTTTTTCTTCCEEECTTSCCCCSTT---CSCTTCTTCCEEECCSSCCCCCCCCGG------------GGGCT
T ss_pred -----ccCHhhhcCccccccccccccccccCCC---ccccccccccEEecCCCccceecChhh------------hcccC
Confidence 4445677888888888888888877764 2467788888888888877652 3433 44455
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCc----cEEeccCCCCCCCCCCCCCCCCCCCEEEccCC------------------
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTL----ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT------------------ 254 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n------------------ 254 (562)
+|++|++++|.+++..+..+..+++| +.+++++|.+.......+... +|+.|++++|
T Consensus 150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 228 (570)
T 2z63_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228 (570)
T ss_dssp TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCE
T ss_pred CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccc
Confidence 67777777777776666666666555 667777776544433333322 4555555544
Q ss_pred ----------------------------------------cCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCC
Q 048635 255 ----------------------------------------SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL 294 (562)
Q Consensus 255 ----------------------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 294 (562)
.+.+..+..+..+++|++|++++|.++ .+|..+..+ +|
T Consensus 229 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L 306 (570)
T 2z63_A 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW 306 (570)
T ss_dssp EEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred eeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence 222334455555666666666666665 455555555 66
Q ss_pred CeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc-----------ceEECCCCcCcccC--CccccCCCCCcCEEECcCC
Q 048635 295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN-----------GVLNLGRNNLNGTL--SDIIFPRNCGLHILDLSGN 361 (562)
Q Consensus 295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~n 361 (562)
++|++++|.+... +. ..+++|+.|++++|.+. +.+++++|.+.+.. +.. +..+++|+.|++++|
T Consensus 307 ~~L~l~~n~~~~l-~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 307 QHLELVNCKFGQF-PT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFN 383 (570)
T ss_dssp SEEEEESCBCSSC-CB-CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH-HHTCSCCCEEECCSC
T ss_pred cEEeeccCccccc-Cc-ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc-ccccCccCEEECCCC
Confidence 6666666666522 21 34555666666555443 22333333332211 222 445556666666666
Q ss_pred cccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR 440 (562)
Q Consensus 362 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 440 (562)
.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-- 458 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQ-- 458 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEG--
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCc--
Confidence 66543333 5566666666666666655433 34556666666666666665543 555566666666666666652
Q ss_pred CChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635 441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 520 (562)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 520 (562)
.+.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..++
T Consensus 459 --------------------~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 459 --------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp --------------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred --------------------cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 145677889999999999999999988899999999999999999999988888899999
Q ss_pred CCCeEeCcCCcceecCCCCC
Q 048635 521 FLSVLNLSYNNLVGQIPTAK 540 (562)
Q Consensus 521 ~L~~L~l~~n~l~~~~p~~~ 540 (562)
+|++|++++|++.+..|...
T Consensus 519 ~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TCCEEECCSSCBCCCTTTTH
T ss_pred CCcEEEecCCcccCCCcchH
Confidence 99999999999999888543
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.3e-45 Score=387.94 Aligned_cols=427 Identities=18% Similarity=0.130 Sum_probs=297.9
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.... +..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.
T Consensus 56 ~~L~~L~Ls~n-~l~~i~--------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--- 117 (606)
T 3vq2_A 56 SELQWLDLSRC-EIETIE--------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA--- 117 (606)
T ss_dssp TTCCEEECTTC-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC---
T ss_pred ccCcEEeCCCC-cccccC--------------HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc---
Confidence 68999999999 777665 567888999999999999998777888999999999999998853
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCC---------
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ--------- 188 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~--------- 188 (562)
...+..++++++|++|++++|.+++... +..+.++++|++|++++|.+.+..+..++.+..+..
T Consensus 118 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~l--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 118 -----SLESFPIGQLITLKKLNVAHNFIHSCKL--PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp -----CSSSSCCTTCTTCCEEECCSSCCCCCCC--CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred -----cccccccCCCCCCCEEeCCCCcccceec--hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 4445668889999999999998876331 256788899999999999888877776655443210
Q ss_pred ------cccccCCCCCCEEEccCCcCc-----------------------------------------------------
Q 048635 189 ------FFFVANLLNLTNLDLSQCDLR----------------------------------------------------- 209 (562)
Q Consensus 189 ------~~~l~~l~~L~~L~l~~~~~~----------------------------------------------------- 209 (562)
+.......+|++|++++|.+.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 111222337888888887653
Q ss_pred -----ccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC
Q 048635 210 -----GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI 284 (562)
Q Consensus 210 -----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 284 (562)
+..|. +..+++|+.|+++++.+. .++.+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~--~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCC--CCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred cccccccccc-cccCCCCCEEEecCccch--hhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence 11222 455688899999998764 344788899999999999999 5667 45 8999999999999665443
Q ss_pred CccCCCCCCCCeeeCcCCccccc---CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCC
Q 048635 285 PTSTTNLTQLFHVDFSSNHFSGP---IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361 (562)
Q Consensus 285 ~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n 361 (562)
.+..+++|++|++++|.+.+. ...+..+++|++|++++|.++ .+|.. +..+++|+.|++++|
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~-~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI------------IMSAN-FMGLEELQHLDFQHS 409 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE------------EECCC-CTTCTTCCEEECTTS
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc------------cchhh-ccCCCCCCeeECCCC
Confidence 577899999999999999875 334578899999999999876 23322 444455555555555
Q ss_pred cccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 362 QLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 362 ~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .. +..+..+++|++|++++|++++
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCCE
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCCcCCc
Confidence 5544443 344455555555555555554444445555555555555555443 12 4444455555555555555544
Q ss_pred cCChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCC-CCCeeeCCCCcccccCh
Q 048635 440 RLSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIP 513 (562)
Q Consensus 440 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p 513 (562)
..|..+.....++.+.. .+.+.+..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 43333322223332222 33346667888999999999999999999 6777799887 69999999999986444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-44 Score=380.60 Aligned_cols=451 Identities=18% Similarity=0.150 Sum_probs=348.8
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.+.. +..|.++++|++|++++|++++..|++|.++++|++|++++|.+
T Consensus 26 ~~L~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---- 86 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIG--------------HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL---- 86 (549)
T ss_dssp TTCCEEECCSS-CCCEEC--------------SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC----
T ss_pred CCccEEECcCC-ccCccC--------------hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc----
Confidence 47999999999 676665 56799999999999999999988889999999999999999985
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
....+..|+++++|++|++++|.++.++. ...+..+++|++|++++|.+.+..+. ..+.++++
T Consensus 87 ----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~ 149 (549)
T 2z81_A 87 ----SSLSSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRR-----------IDFAGLTS 149 (549)
T ss_dssp ----CSCCHHHHTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECT-----------TTTTTCCE
T ss_pred ----CccCHHHhccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCH-----------hhhhcccc
Confidence 35556679999999999999999986542 24678999999999999985444331 22566778
Q ss_pred CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC--C-CCCcCCCCCcEEE
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL--P-DPIGILKYLTRVD 274 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~~~~L~~L~ 274 (562)
|++|++++|.+++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + .....+++|+.|+
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 999999999999889999999999999999988653221112234789999999999988642 1 2234578899999
Q ss_pred ccCCcccccCC----ccCCCCCCCCeeeCcCCcccccC-------CCCCCCCCCCEEEcCCCCCc---------------
Q 048635 275 LRSCSFTGPIP----TSTTNLTQLFHVDFSSNHFSGPI-------PSFHESRNLNYLDLSSNNLN--------------- 328 (562)
Q Consensus 275 l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~-------~~~~~~~~L~~L~l~~n~l~--------------- 328 (562)
+++|.+++..+ ..+..+++|+.+++++|.+.+.. ..+..+.+++.+++.++.+.
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 99998875432 34456788889999888876532 12355667777777666432
Q ss_pred ---ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC---ccCCCCCCCCEEEcccCCCCCcch--HHhhcCCC
Q 048635 329 ---GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP---KSLANCNMLQVLDFRNNHISDNFP--CWLRNASS 400 (562)
Q Consensus 329 ---~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~ 400 (562)
+.+++++|.+. .+|..++..+++|+.|++++|.+.+..| ..+..+++|++|++++|++++..+ ..+..+++
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 34666666664 7887766778999999999999987653 347789999999999999988543 56889999
Q ss_pred CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeC
Q 048635 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNM 479 (562)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L 479 (562)
|++|++++|++.. +|..+..+++|++|++++|++.+ +|...+. .+..+.. ++.+.+. +..+++|++|++
T Consensus 389 L~~L~Ls~N~l~~---lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~--~L~~L~Ls~N~l~~~----~~~l~~L~~L~L 458 (549)
T 2z81_A 389 LTSLDISRNTFHP---MPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQ--TLEVLDVSNNNLDSF----SLFLPRLQELYI 458 (549)
T ss_dssp CCEEECTTCCCCC---CCSCCCCCTTCCEEECTTSCCSC-CCTTSCT--TCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred CCEEECCCCCCcc---CChhhcccccccEEECCCCCccc-ccchhcC--CceEEECCCCChhhh----cccCChhcEEEC
Confidence 9999999999883 47778889999999999999863 2222211 2222222 3333332 257889999999
Q ss_pred cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCC
Q 048635 480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 537 (562)
++|+++ .+|. ...+++|++|+|++|++++..|+.+..+++|++|++++|++.+..|
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999998 6665 4678999999999999998888888999999999999999887766
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-44 Score=380.02 Aligned_cols=431 Identities=22% Similarity=0.205 Sum_probs=330.7
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
+++++|++++|.+++..+.+|.++++|++|++++|.+ ....+..|+++++|++|++++|.++.+++ ..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAF 96 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECT---TTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--------CccCcccccCchhCCEEeCcCCcCCccCH---hhh
Confidence 5799999999999988888999999999999999985 34556789999999999999999988875 578
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc-cCChhhhCCCCccEEeccCCCCCCC
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQG 235 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~ 235 (562)
..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++ .+|..+.++++|++|++++|.+...
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFP------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCS------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCccccccccccccccccCCCcc------------ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 89999999999999987754322 5677889999999999986 4689999999999999999987665
Q ss_pred CCCCCCCCCCC----CEEEccCCcCCCCCCCCCcCCCCCcEEEccCC---------------------------------
Q 048635 236 SLPNFPKNSYL----QNLNLANTSFSGILPDPIGILKYLTRVDLRSC--------------------------------- 278 (562)
Q Consensus 236 ~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n--------------------------------- 278 (562)
....+..+++| +.|++++|.+++..+..+... +|++|++++|
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 55566667777 899999999998777777655 7888888776
Q ss_pred -------------------------cccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEEC
Q 048635 279 -------------------------SFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL 333 (562)
Q Consensus 279 -------------------------~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l 333 (562)
.+.+..+..+..+++|++|++++|.+.+....+..+ +|++|++++|.+.
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~----- 317 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG----- 317 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-----
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-----
Confidence 233345566777899999999999988666566667 9999999999876
Q ss_pred CCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc--hHHhhcCCCCCEEEccCccc
Q 048635 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF--PCWLRNASSLQVLVLRSNNF 411 (562)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l 411 (562)
.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+
T Consensus 318 -------~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 318 -------QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp -------SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred -------ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 3443 2345566777777666544433 55666777777777666533 45566667777777777766
Q ss_pred ceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh-hhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCc-cCc
Q 048635 412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL-GMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALT-GSI 488 (562)
Q Consensus 412 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~ 488 (562)
.+.. +. +..+++|++|++++|.+.+..+...+... .++.+.. .+.+.+..+..+..+++|++|++++|.++ +.+
T Consensus 386 ~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 386 ITMS--SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EEEE--EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccc--cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 6543 22 55666677777776666555443222222 3333322 33456667788899999999999999997 578
Q ss_pred ChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCC---CccccchHHH
Q 048635 489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHV---LPNFNLHRRQ 552 (562)
Q Consensus 489 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~---~~~l~~~~~~ 552 (562)
|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.. +..+++.+|.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999999999999999999888999999999999999999999887766544 4444555544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-43 Score=378.74 Aligned_cols=433 Identities=17% Similarity=0.246 Sum_probs=339.3
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCC--c-----------------------cccCCCccccc-
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFS--W-----------------------RLGIPNFNFFQ- 130 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~-----------------------~~~~~~~~~~~- 130 (562)
.+++.|+|++++++|.+|++++++++|++|++++|.+..+.. . .+....+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 467889999999999999999999999999999996411000 0 00000111111
Q ss_pred ------------------CCCCCCEEEcc--CccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhccccc--CC-
Q 048635 131 ------------------NLKELRELYLD--NVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLR--SH- 186 (562)
Q Consensus 131 ------------------~l~~L~~L~l~--~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~--~~- 186 (562)
....++.+.+. .|+++.++ ..+.++++|++|++++|.+++. .+..+.... ..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCC----HHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 11122222222 45666654 5688999999999999999884 000000000 00
Q ss_pred -CCccccc--CCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC-CCCCCCC-CCCC------CCCCCEEEccCCc
Q 048635 187 -SQFFFVA--NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP-LLQGSLP-NFPK------NSYLQNLNLANTS 255 (562)
Q Consensus 187 -~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~-~~~~------~~~L~~L~L~~n~ 255 (562)
.-|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +....++ .+.. +++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 0023345 77889999999999999999999999999999999997 5320222 3333 3899999999999
Q ss_pred CCCCCCC--CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCC-CCEEEcCCCCCcceEE
Q 048635 256 FSGILPD--PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN-LNYLDLSSNNLNGVLN 332 (562)
Q Consensus 256 l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~l~ 332 (562)
++ .+|. .++.+++|++|++++|.+++.+| .+..+++|++|++++|.+...+..+..+++ |++|++++|.++
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~---- 390 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK---- 390 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS----
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc----
Confidence 99 7788 89999999999999999998888 899999999999999999966667888898 999999999887
Q ss_pred CCCCcCcccCCccccCCC--CCcCEEECcCCcccccCCccCC-------CCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635 333 LGRNNLNGTLSDIIFPRN--CGLHILDLSGNQLQGVVPKSLA-------NCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403 (562)
Q Consensus 333 l~~~~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 403 (562)
.+|.. +... ++|+.|++++|.+.+..|..+. .+++|++|++++|+++...+..+..+++|++
T Consensus 391 --------~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 391 --------YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp --------SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred --------ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 56654 4443 4899999999999999998888 7889999999999999866666778999999
Q ss_pred EEccCcccceecCCCCCCCC--------CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc--CcCC
Q 048635 404 LVLRSNNFSGHISYPRNNVS--------WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG--RFKS 473 (562)
Q Consensus 404 L~l~~n~l~~~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~ 473 (562)
|++++|.+... +..... +++|++|++++|+++ .+|..+. .+++
T Consensus 462 L~Ls~N~l~~i---~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~~~~~~l~~ 514 (636)
T 4eco_A 462 INLMGNMLTEI---PKNSLKDENENFKNTYLLTSIDLRFNKLT------------------------KLSDDFRATTLPY 514 (636)
T ss_dssp EECCSSCCSBC---CSSSSEETTEECTTGGGCCEEECCSSCCC------------------------BCCGGGSTTTCTT
T ss_pred EECCCCCCCCc---CHHHhccccccccccCCccEEECcCCcCC------------------------ccChhhhhccCCC
Confidence 99999999843 333322 239999999999983 4566666 8999
Q ss_pred CCEEeCcCCcCccCcChhccCCCCCCeeeC------CCCcccccChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCccc
Q 048635 474 LYALNMSHNALTGSIPSSFGNLKQIESLDL------SMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNF 546 (562)
Q Consensus 474 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l 546 (562)
|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|. ....+..+
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L 592 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL 592 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence 9999999999996 8999999999999999 56888889999999999999999999999 67876 45778888
Q ss_pred cchHHHHhhhh
Q 048635 547 NLHRRQLQAMK 557 (562)
Q Consensus 547 ~~~~~~l~~l~ 557 (562)
++++|++..+.
T Consensus 593 ~Ls~N~l~~~~ 603 (636)
T 4eco_A 593 DIKDNPNISID 603 (636)
T ss_dssp ECCSCTTCEEE
T ss_pred ECcCCCCcccc
Confidence 88888766544
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=382.80 Aligned_cols=444 Identities=21% Similarity=0.172 Sum_probs=268.6
Q ss_pred ccccCCCCCCCEEecCCccCcccC-CccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCC
Q 048635 70 QFGLANLTNLTYLNLSHCGFTGEI-PTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGL 148 (562)
Q Consensus 70 ~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 148 (562)
+.+|.++++|++|++++|...+.+ |.+|.++++|++|++++|.+ ....|..|.++++|++|++++|.+++.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--------~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI--------YFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC--------CEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC--------cccCHhHccCCcccCEeeCcCCCCCcc
Confidence 445666666666666666433333 55566666666666666653 234455666666666666666666542
Q ss_pred CCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCC--CCccEEe
Q 048635 149 GTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV--STLETLD 226 (562)
Q Consensus 149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ 226 (562)
.+. ...+..+++|++|++++|.+.+..+. ..++++++|++|++++|.+++..+..+..+ ++|+.|+
T Consensus 113 ~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~-----------~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 113 VLK-DGYFRNLKALTRLDLSKNQIRSLYLH-----------PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CST-TCCCSSCSSCCEEEEESCCCCCCCCC-----------GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred ccc-CccccccCCCCEEECCCCcccccccc-----------hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 211 01255666666666666666543321 124455566666666666666666666555 6666666
Q ss_pred ccCCCCCCCCCCCCCCCCC------CCEEEccCCcCCCCCCCCCcC----------------------------------
Q 048635 227 LSYNPLLQGSLPNFPKNSY------LQNLNLANTSFSGILPDPIGI---------------------------------- 266 (562)
Q Consensus 227 L~~~~~~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~~~~---------------------------------- 266 (562)
++.|.+.......+..+++ |+.|++++|.+++..+..+..
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 6666554433333333332 677777766555433332211
Q ss_pred ----CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635 267 ----LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341 (562)
Q Consensus 267 ----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~ 341 (562)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.++ .
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------~ 328 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG------------E 328 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS------------C
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC------------c
Confidence 1455666666666555555555566666666666666555433 3455556666666665554 3
Q ss_pred CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC
Q 048635 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421 (562)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (562)
++...+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|++... +.
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l---~~-- 398 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL---PK-- 398 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC---CC--
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc---cc--
Confidence 3223366666666677766666665556666666667777766666552 2256666666666666532 22
Q ss_pred CCCCCCCEEEcCCCcCCCcCChhhhhhh-hhhhhhh-hCCCcccccc-cccCcCCCCEEeCcCCcCc-----cCcChhcc
Q 048635 422 VSWPLLQIVDFASNKFGGRLSQKCSTTL-GMRYQAT-NKRCRDQATE-EMGRFKSLYALNMSHNALT-----GSIPSSFG 493 (562)
Q Consensus 422 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~-~l~~l~~L~~L~Ls~n~i~-----~~~p~~l~ 493 (562)
...+++.|++++|++.+.-.......+ .+..+.. .+.+.+..+. .+..+++|+.|++++|.++ +..+..|.
T Consensus 399 -~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 399 -INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp -CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred -cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 145677777887777654332222222 3333333 3334433222 3456788999999999886 34456688
Q ss_pred CCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCC-CCCccccchHHHHhhh
Q 048635 494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK-HVLPNFNLHRRQLQAM 556 (562)
Q Consensus 494 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~~~~l~~~~~~l~~l 556 (562)
.+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+ ..+..+++++|++.+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP 541 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCC
Confidence 99999999999999999889889999999999999999997666544 5677788888776654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-43 Score=381.13 Aligned_cols=432 Identities=17% Similarity=0.230 Sum_probs=332.8
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeC-CCCCCCCCCCcccc-C-------------------------------
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDL-SSREPISGFSWRLG-I------------------------------- 123 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~-~------------------------------- 123 (562)
.+++.|+|+++++.|.+|++|+++++|++|+| ++|.+......... .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788999999999999999999999999999 77753211000000 0
Q ss_pred -----------CCcccccCCCCCCEEEccC--ccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhccccc--CC-
Q 048635 124 -----------PNFNFFQNLKELRELYLDN--VDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLR--SH- 186 (562)
Q Consensus 124 -----------~~~~~~~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~--~~- 186 (562)
..+....+...++.+.+.. |.++.+| ..+..+++|++|++++|.+++. ++..+.... ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP----~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS----KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchh----HHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0000001122333333333 5666654 5688999999999999999882 110000000 00
Q ss_pred -CCccccc--CCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC-CCCCCCC--------CCCCCCCCCEEEccCC
Q 048635 187 -SQFFFVA--NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP-LLQGSLP--------NFPKNSYLQNLNLANT 254 (562)
Q Consensus 187 -~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~--------~~~~~~~L~~L~L~~n 254 (562)
.-|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +....++ .+..+++|+.|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 0023344 78899999999999999999999999999999999997 4320222 3345679999999999
Q ss_pred cCCCCCCC--CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCC-CCEEEcCCCCCcceE
Q 048635 255 SFSGILPD--PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN-LNYLDLSSNNLNGVL 331 (562)
Q Consensus 255 ~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~l 331 (562)
.++ .+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--- 632 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--- 632 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC---
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC---
Confidence 999 7787 8999999999999999999 777 899999999999999999965556788888 999999999886
Q ss_pred ECCCCcCcccCCccccCCCC--CcCEEECcCCcccccCCccC---C--CCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635 332 NLGRNNLNGTLSDIIFPRNC--GLHILDLSGNQLQGVVPKSL---A--NCNMLQVLDFRNNHISDNFPCWLRNASSLQVL 404 (562)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 404 (562)
.+|.. +.... +|+.|++++|.+.+.+|... . .+++|+.|++++|++....+..+..+++|+.|
T Consensus 633 ---------~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 633 ---------YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp ---------SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred ---------cCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 56654 55444 49999999999987665432 2 34589999999999997555556689999999
Q ss_pred EccCcccceecCCCCCCC--------CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc--CcCCC
Q 048635 405 VLRSNNFSGHISYPRNNV--------SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG--RFKSL 474 (562)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~L 474 (562)
++++|.+... +.... .+++|++|++++|+++ .+|..+. .+++|
T Consensus 703 ~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~------------------------~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 703 ILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKLT------------------------SLSDDFRATTLPYL 755 (876)
T ss_dssp ECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSCCC------------------------CCCGGGSTTTCTTC
T ss_pred ECCCCcCCcc---ChHHhccccccccccCCccEEECCCCCCc------------------------cchHHhhhccCCCc
Confidence 9999999843 44333 2349999999999983 4566666 89999
Q ss_pred CEEeCcCCcCccCcChhccCCCCCCeeeCCC------CcccccChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCcccc
Q 048635 475 YALNMSHNALTGSIPSSFGNLKQIESLDLSM------NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNFN 547 (562)
Q Consensus 475 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~ 547 (562)
+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|++|+|++|++ +.+|. ....+..++
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~Ld 833 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILD 833 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEE
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEE
Confidence 999999999996 788999999999999976 888889999999999999999999999 68886 456788888
Q ss_pred chHHHHhhhh
Q 048635 548 LHRRQLQAMK 557 (562)
Q Consensus 548 ~~~~~l~~l~ 557 (562)
+++|++..+.
T Consensus 834 Ls~N~l~~i~ 843 (876)
T 4ecn_A 834 IADNPNISID 843 (876)
T ss_dssp CCSCTTCEEE
T ss_pred CCCCCCCccC
Confidence 8888775543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-42 Score=360.04 Aligned_cols=424 Identities=18% Similarity=0.162 Sum_probs=285.3
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.+.. +..|.++++|++|++++|++++..|.+|+++++|++|++++|.+.
T Consensus 21 ~~L~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 82 (520)
T 2z7x_B 21 QKTTILNISQN-YISELW--------------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--- 82 (520)
T ss_dssp TTCSEEECCSS-CCCCCC--------------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---
T ss_pred ccccEEECCCC-cccccC--------------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---
Confidence 56666666666 444333 456777777777777777777666777777777777777777642
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
.+|.. .+++|++|++++|.++.++. +..++.+++|++|++++|.+.+.. +..+++
T Consensus 83 ------~lp~~--~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~~~---------------~~~l~~ 137 (520)
T 2z7x_B 83 ------KISCH--PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEKSS---------------VLPIAH 137 (520)
T ss_dssp ------EEECC--CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCGGG---------------GGGGTT
T ss_pred ------ecCcc--ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccchhh---------------cccccc
Confidence 22332 67777777777777765432 145667777777777777765421 233344
Q ss_pred C--CEEEccCCcC--cccCChhhhCCC-CccEEeccCCCCCCCCCC-CCCCCCCCCEEEccCCc-------CCCCCCCCC
Q 048635 198 L--TNLDLSQCDL--RGKYPEKILQVS-TLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTS-------FSGILPDPI 264 (562)
Q Consensus 198 L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~n~-------l~~~~~~~~ 264 (562)
| ++|++++|.+ .+..|..+..+. ....+++++|.+...... .+..+++|+.+++++|. +.+.++ .+
T Consensus 138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l 216 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL 216 (520)
T ss_dssp SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG
T ss_pred ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh
Confidence 5 7777777777 556666665544 222345555544322221 34456777777777765 333333 45
Q ss_pred cCCCCCcEEEccCCcccccCCccCC---CCCCCCeeeCcCCcccccCC-CC-----CCCCCCCEEEcCCCCC--------
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTT---NLTQLFHVDFSSNHFSGPIP-SF-----HESRNLNYLDLSSNNL-------- 327 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~-~~-----~~~~~L~~L~l~~n~l-------- 327 (562)
..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+..| .+ ..+++|+.+++++|.+
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~ 296 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence 5566666666655555432111110 12356666666666654332 22 4455555555555543
Q ss_pred -------cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC--cchHHhhcC
Q 048635 328 -------NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD--NFPCWLRNA 398 (562)
Q Consensus 328 -------~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l 398 (562)
.+.+++++|.+.+ ++ ....+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|..+..+
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred cccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence 1334444444332 11 12677889999999999998889999999999999999999997 456789999
Q ss_pred CCCCEEEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635 399 SSLQVLVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477 (562)
Q Consensus 399 ~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L 477 (562)
++|++|++++|.+.+ .. ...+..+++|++|++++|++++.. +..+. ++|+.|
T Consensus 374 ~~L~~L~Ls~N~l~~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~~l~--~~L~~L 426 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEK--KGDCSWTKSLLSLNMSSNILTDTI-----------------------FRCLP--PRIKVL 426 (520)
T ss_dssp TTCCEEECCSSCCBCCGG--GCSCCCCTTCCEEECCSSCCCGGG-----------------------GGSCC--TTCCEE
T ss_pred CCCCEEECCCCcCCcccc--cchhccCccCCEEECcCCCCCcch-----------------------hhhhc--ccCCEE
Confidence 999999999999987 33 335778899999999999985433 33333 789999
Q ss_pred eCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh-hcCCCCCCeEeCcCCcceecCC
Q 048635 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p 537 (562)
++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++.+..+
T Consensus 427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999 788888899999999999999994 5554 8999999999999999987544
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-39 Score=346.08 Aligned_cols=426 Identities=25% Similarity=0.289 Sum_probs=285.5
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
..+++|||++| .++... +.+|.++++|++|+|++|+|++..|++|.++++|++|+|++|++
T Consensus 52 ~~~~~LdLs~N-~i~~l~--------------~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---- 112 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLG--------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---- 112 (635)
T ss_dssp TTCCEEECTTS-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred cCCCEEEeeCC-CCCCCC--------------HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC----
Confidence 47899999999 777655 56799999999999999999987788899999999999999985
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
....+.+|.++++|++|++++|+++.+++ ..++.+++|++|++++|.+..... +..++.+++
T Consensus 113 ----~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~ 174 (635)
T 4g8a_A 113 ----QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTN 174 (635)
T ss_dssp ----CEECGGGGTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCCCCCC-----------CGGGGGCTT
T ss_pred ----CCCCHHHhcCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccccCCC-----------chhhccchh
Confidence 34556778999999999999999998875 457889999999999998866421 223556678
Q ss_pred CCEEEccCCcCcccCChhhhCCCC----ccEEeccCCCCCCCCCCCCCCCCCCCEEEccCC-------------------
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVST----LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT------------------- 254 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n------------------- 254 (562)
|++|++++|.+++..+..+..+.+ ...++++.|.+.......+. ...++.+++.+|
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 253 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccc
Confidence 999999999888777766654332 23455665554322211111 111222222221
Q ss_pred ---------------------------------------------------------------cCCCCCCCCCcCCCCCc
Q 048635 255 ---------------------------------------------------------------SFSGILPDPIGILKYLT 271 (562)
Q Consensus 255 ---------------------------------------------------------------~l~~~~~~~~~~~~~L~ 271 (562)
.+... ..+.....++
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~ 331 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQ 331 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCS
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhh
Confidence 11110 0112223344
Q ss_pred EEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc---------------ceEECCCC
Q 048635 272 RVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN---------------GVLNLGRN 336 (562)
Q Consensus 272 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~---------------~~l~l~~~ 336 (562)
.|++.+|.+....+ ..+..|+.+++..|.... ......+++|+.+++++|.+. ..+++..+
T Consensus 332 ~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 332 HLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp EEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 44444444432211 123444455555444432 223345677888888877664 23444444
Q ss_pred cCcccCCccccCCCCCcCEEECcCCcccccC-CccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc-ee
Q 048635 337 NLNGTLSDIIFPRNCGLHILDLSGNQLQGVV-PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS-GH 414 (562)
Q Consensus 337 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~ 414 (562)
...+ ++.. +..+++|+.+++.++...... ...+..+++++.++++.|.+....+..+..+++|++|++++|.+. ..
T Consensus 408 ~~~~-~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 408 GVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp SEEE-ECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cccc-cccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence 4332 2222 566677777777776654432 345667777888888888777767777777788888888877643 23
Q ss_pred cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC
Q 048635 415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN 494 (562)
Q Consensus 415 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~ 494 (562)
. +..+..+++|++|++++|++ .+..|..|..+++|++|+|++|++++..|..|..
T Consensus 486 ~--~~~~~~l~~L~~L~Ls~N~L-----------------------~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 540 (635)
T 4g8a_A 486 L--PDIFTELRNLTFLDLSQCQL-----------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540 (635)
T ss_dssp E--CSCCTTCTTCCEEECTTSCC-----------------------CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred C--chhhhhccccCEEECCCCcc-----------------------CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence 3 56677778888888888877 3444566777888888888888888777777888
Q ss_pred CCCCCeeeCCCCcccccChhhhcCC-CCCCeEeCcCCccee
Q 048635 495 LKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVG 534 (562)
Q Consensus 495 l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~ 534 (562)
+++|++|+|++|++++..|+.+..+ ++|++|++++|++.+
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 8888888888888887777777777 578888888888765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=351.03 Aligned_cols=425 Identities=21% Similarity=0.221 Sum_probs=312.6
Q ss_pred EEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCcc
Q 048635 41 IGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWR 120 (562)
Q Consensus 41 ~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 120 (562)
+++|++++ .++. + |..+. ++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 3 ~~l~ls~n-~l~~-i--------------p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------- 57 (520)
T 2z7x_B 3 FLVDRSKN-GLIH-V--------------PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI------- 57 (520)
T ss_dssp CEEECTTS-CCSS-C--------------CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-------
T ss_pred ceEecCCC-Cccc-c--------------ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCcc-------
Confidence 57899998 6663 3 44454 8999999999999977778899999999999999985
Q ss_pred ccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCCCCC
Q 048635 121 LGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLLNLT 199 (562)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~~L~ 199 (562)
....|..|+++++|++|++++|+++.++. . .+++|++|++++|.+.+. .|.. ++++++|+
T Consensus 58 -~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~------------~~~l~~L~ 118 (520)
T 2z7x_B 58 -QYLDISVFKFNQELEYLDLSHNKLVKISC----H--PTVNLKHLDLSFNAFDALPICKE------------FGNMSQLK 118 (520)
T ss_dssp -CEEEGGGGTTCTTCCEEECCSSCCCEEEC----C--CCCCCSEEECCSSCCSSCCCCGG------------GGGCTTCC
T ss_pred -CCcChHHhhcccCCCEEecCCCceeecCc----c--ccCCccEEeccCCccccccchhh------------hccCCcce
Confidence 35557889999999999999999987764 2 799999999999998773 4443 55667899
Q ss_pred EEEccCCcCcccCChhhhCCCCc--cEEeccCCCC--CCCCCCCCCCCC-CCCEEEccCCcCCCCCC-CCCcCCCCCcEE
Q 048635 200 NLDLSQCDLRGKYPEKILQVSTL--ETLDLSYNPL--LQGSLPNFPKNS-YLQNLNLANTSFSGILP-DPIGILKYLTRV 273 (562)
Q Consensus 200 ~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L 273 (562)
+|++++|.+++ ..+..+++| +.|++++|.+ .......+..+. ....+++++|.+.+.++ ..+..+++|+.+
T Consensus 119 ~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 119 FLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 99999999985 456667777 9999999986 333334444433 23467788888766544 466789999999
Q ss_pred EccCCc-------ccccCCccCCCCCCCCeeeCcCCcccccCC----CCCCCCCCCEEEcCCCCCcceEECCCCcCcccC
Q 048635 274 DLRSCS-------FTGPIPTSTTNLTQLFHVDFSSNHFSGPIP----SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342 (562)
Q Consensus 274 ~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~ 342 (562)
++++|. +.+.++ .+..+++|+.|++++|.+.+... .....++|++|++++|.++ |.+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~ 263 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ-----------GQL 263 (520)
T ss_dssp CEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE-----------SCC
T ss_pred cccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc-----------Ccc
Confidence 999987 555555 68889999999999988765211 1112458999999888765 344
Q ss_pred Ccccc----CCCCC--------------------------cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch
Q 048635 343 SDIIF----PRNCG--------------------------LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP 392 (562)
Q Consensus 343 ~~~~~----~~~~~--------------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 392 (562)
|...+ ..++. |+.|++++|.+.+.. .+..+++|++|++++|++++..|
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhh
Confidence 44321 34444 455555555443221 12466777777777777777666
Q ss_pred HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccc-cccCc
Q 048635 393 CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATE-EMGRF 471 (562)
Q Consensus 393 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~l 471 (562)
..+..+++|++|++++|.+.+...++..+..+++|++|++++|++.+. +|. .+..+
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------l~~~~~~~l 398 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-----------------------EKKGDCSWT 398 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-----------------------GGGCSCCCC
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-----------------------cccchhccC
Confidence 677777777777777777765332345566777777777777777432 333 36778
Q ss_pred CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC-CC---CCcccc
Q 048635 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA-KH---VLPNFN 547 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~---~~~~l~ 547 (562)
++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +. .+..++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence 9999999999999888877664 79999999999999 78888889999999999999999 56654 33 344555
Q ss_pred chHHHH
Q 048635 548 LHRRQL 553 (562)
Q Consensus 548 ~~~~~l 553 (562)
+.+|.+
T Consensus 475 l~~N~~ 480 (520)
T 2z7x_B 475 LHTNPW 480 (520)
T ss_dssp CCSSCB
T ss_pred CcCCCC
Confidence 555543
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-40 Score=351.69 Aligned_cols=443 Identities=19% Similarity=0.204 Sum_probs=324.5
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
++|++|++++|++++..|..|.++++|++|++++|.+ ....+..|.++++|++|++++|.++++++ ..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCSCCH---HHH
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--------CccChhhccccccCCEEECCCCccCccCH---HHh
Confidence 7899999999999988889999999999999999985 35566789999999999999999998875 458
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCc-CcccCChhhhCCCCccEEeccCCCCCCC
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCD-LRGKYPEKILQVSTLETLDLSYNPLLQG 235 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 235 (562)
..+++|++|++++|.+.+... +..+.++++|++|++++|. +....+..+..+++|++|++++|.+...
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGV-----------TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCS-----------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred ccCCCCcEEECCCCcccccch-----------hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 899999999999999876321 2236677889999999998 4444446899999999999999988766
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC--C-ccCCCCCCCCeeeCcCCcccccC----
Q 048635 236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI--P-TSTTNLTQLFHVDFSSNHFSGPI---- 308 (562)
Q Consensus 236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~~~~~~---- 308 (562)
....+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 6778888999999999999876432223356899999999999998642 1 23345789999999999887532
Q ss_pred -CCCCCCCCCCEEEcCCCCCcce-------------------EECCCCcCccc-----CCccccCCCCCcCEEECcCCcc
Q 048635 309 -PSFHESRNLNYLDLSSNNLNGV-------------------LNLGRNNLNGT-----LSDIIFPRNCGLHILDLSGNQL 363 (562)
Q Consensus 309 -~~~~~~~~L~~L~l~~n~l~~~-------------------l~l~~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l 363 (562)
..+..+++|+.+++++|.+... +.+..+.+... ++. .+....+|+.|++++|.+
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCcc
Confidence 2236678999999999876532 22222211100 000 012234688888888887
Q ss_pred cccCCccC-CCCCCCCEEEcccCCCCCcchH---HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 364 QGVVPKSL-ANCNMLQVLDFRNNHISDNFPC---WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 364 ~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
. .+|..+ ..+++|++|++++|++.+..|. .++.+++|++|++++|.+.+.......+..+++|++|++++|+++
T Consensus 323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 7 455544 5688899999999988876543 367788899999999888754311234677888999999999886
Q ss_pred cCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCC
Q 048635 440 RLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 519 (562)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 519 (562)
.+|..+.....++++....+-...++..+. ++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred cCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC
Confidence 455433322234433332222223333322 57888888888877532 47899999999999999 6776 4678
Q ss_pred CCCCeEeCcCCcceecCCCCCC---CCccccchHHH
Q 048635 520 NFLSVLNLSYNNLVGQIPTAKH---VLPNFNLHRRQ 552 (562)
Q Consensus 520 ~~L~~L~l~~n~l~~~~p~~~~---~~~~l~~~~~~ 552 (562)
++|++|++++|++++.+|..+. .+..+++.+|.
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999999999999988876544 44455555554
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=335.13 Aligned_cols=369 Identities=21% Similarity=0.230 Sum_probs=232.6
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
++|++|++++|.+++..|..|.++++|++|++++|.+. ....+..|.++++|++|++++|.++.+.+ ..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-------LVIRNNTFRGLSSLIILKLDYNQFLQLET---GAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-------CEECTTTTTTCTTCCEEECTTCTTCEECT---TTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCccc-------ceECcccccccccCCEEeCCCCccCccCh---hhc
Confidence 67999999999999888888999999999999999742 12335678889999999999998887754 567
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh-hhCCCCccEEeccCCCCCCC
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK-ILQVSTLETLDLSYNPLLQG 235 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~ 235 (562)
..+++|++|++++|.+.+..+.. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+...
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSG----------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHS----------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCcccCCEEeCCCCCCCccccCc----------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 88899999999999887644332 12556778899999988888776665 77888888888888876555
Q ss_pred CCCCCCCC--CCCCEEEccCCcCCCCCCCCC--------cCCCCCcEEEccCCcccccCCccCCCC---CCCCeeeCcCC
Q 048635 236 SLPNFPKN--SYLQNLNLANTSFSGILPDPI--------GILKYLTRVDLRSCSFTGPIPTSTTNL---TQLFHVDFSSN 302 (562)
Q Consensus 236 ~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n 302 (562)
....+..+ .+++.|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+... ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 44455443 567777777777765443322 244566666666666665444433322 45555555555
Q ss_pred cccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC--CCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635 303 HFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP--RNCGLHILDLSGNQLQGVVPKSLANCNMLQVL 380 (562)
Q Consensus 303 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 380 (562)
...+.......+..+ ....+. ..++|+.|++++|.+.+..+..+..+++|++|
T Consensus 250 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 250 YNMGSSFGHTNFKDP-------------------------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp TTTSCCTTCCSSCCC-------------------------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccchhhhccC-------------------------cccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 443221111000000 000011 11234555555555544444444444455555
Q ss_pred EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCC
Q 048635 381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC 460 (562)
Q Consensus 381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (562)
++++|++.+..+. .+..+++|++|++++|.++
T Consensus 305 ~Ls~n~l~~~~~~--------------------------~~~~l~~L~~L~Ls~N~l~---------------------- 336 (455)
T 3v47_A 305 TLAQNEINKIDDN--------------------------AFWGLTHLLKLNLSQNFLG---------------------- 336 (455)
T ss_dssp ECTTSCCCEECTT--------------------------TTTTCTTCCEEECCSSCCC----------------------
T ss_pred ECCCCcccccChh--------------------------HhcCcccCCEEECCCCccC----------------------
Confidence 5555544444444 4444455555555555441
Q ss_pred cccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635 461 RDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539 (562)
Q Consensus 461 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 539 (562)
+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus 337 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 337 -SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp -EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred -CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 223444566667777777777776666666777777777777777777655555666777777777777777666643
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-38 Score=336.47 Aligned_cols=425 Identities=18% Similarity=0.179 Sum_probs=296.5
Q ss_pred eCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCC
Q 048635 34 CDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP 113 (562)
Q Consensus 34 c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 113 (562)
|......+++|++++ .++. + |..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus 27 ~~~~~~~~~l~ls~~-~L~~-i--------------p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 88 (562)
T 3a79_B 27 PFSNELESMVDYSNR-NLTH-V--------------PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88 (562)
T ss_dssp ------CCEEECTTS-CCCS-C--------------CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC
T ss_pred ccccCCCcEEEcCCC-CCcc-C--------------CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC
Confidence 444455689999999 6664 3 33443 8999999999999988788999999999999999985
Q ss_pred CCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCcc-chhcccccCCCCcccc
Q 048635 114 ISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPI-NHHLANLRSHSQFFFV 192 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~~~~~~~l 192 (562)
....+..|.++++|++|++++|.++.++. . .+++|++|++++|.+.+.. |.. +
T Consensus 89 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~L~Ls~N~l~~l~~p~~------------~ 142 (562)
T 3a79_B 89 --------RSLDFHVFLFNQDLEYLDVSHNRLQNISC----C--PMASLRHLDLSFNDFDVLPVCKE------------F 142 (562)
T ss_dssp --------CEECTTTTTTCTTCCEEECTTSCCCEECS----C--CCTTCSEEECCSSCCSBCCCCGG------------G
T ss_pred --------CcCCHHHhCCCCCCCEEECCCCcCCccCc----c--ccccCCEEECCCCCccccCchHh------------h
Confidence 35567889999999999999999998764 2 7999999999999987742 333 5
Q ss_pred cCCCCCCEEEccCCcCcccCChhhhCCCCc--cEEeccCCCC--CCCCCCCCCCCC-CCCEEEccCCcCCCCCCC-CCcC
Q 048635 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTL--ETLDLSYNPL--LQGSLPNFPKNS-YLQNLNLANTSFSGILPD-PIGI 266 (562)
Q Consensus 193 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~~~~ 266 (562)
+++++|++|++++|.+++. .+..+++| +.|++++|.+ .......+..+. ..-.+++++|.+.+.++. .+..
T Consensus 143 ~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~ 219 (562)
T 3a79_B 143 GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219 (562)
T ss_dssp GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESS
T ss_pred cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccc
Confidence 6677899999999999854 34445555 9999999976 333333332221 011334444444332221 2223
Q ss_pred CCCCcEEEccCC----------------------------ccccc----CCccCCCCCCCCeeeCcCCcccccCCC-C--
Q 048635 267 LKYLTRVDLRSC----------------------------SFTGP----IPTSTTNLTQLFHVDFSSNHFSGPIPS-F-- 311 (562)
Q Consensus 267 ~~~L~~L~l~~n----------------------------~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-~-- 311 (562)
+++|+.+++++| .+.+. .+.. ...++|++|++++|.+.+..|. +
T Consensus 220 l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred cceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhh
Confidence 334444444433 22110 0000 1123666666666666644332 1
Q ss_pred ---CCCCCCCEEEcCCCCC---------------cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC
Q 048635 312 ---HESRNLNYLDLSSNNL---------------NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN 373 (562)
Q Consensus 312 ---~~~~~L~~L~l~~n~l---------------~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 373 (562)
..++.|+.+++..+.+ .+.++++++.+. .++ ....+++|+.|++++|.+++..|..+..
T Consensus 299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhcc
Confidence 2233333333333322 123344444332 111 1267788999999999999888999999
Q ss_pred CCCCCEEEcccCCCCCc--chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhh
Q 048635 374 CNMLQVLDFRNNHISDN--FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM 451 (562)
Q Consensus 374 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l 451 (562)
+++|++|++++|++++. .|..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|++++.
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~----------- 443 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAESILVLNLSSNMLTGS----------- 443 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCCCCCTTCCEEECCSSCCCGG-----------
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhhcCcccCCEEECCCCCCCcc-----------
Confidence 99999999999999873 35678899999999999999986221 34577889999999999998533
Q ss_pred hhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh-hcCCCCCCeEeCcCC
Q 048635 452 RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYN 530 (562)
Q Consensus 452 ~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n 530 (562)
.+..+. ++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|
T Consensus 444 ------------~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 444 ------------VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp ------------GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred ------------hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence 333333 68999999999999 77877779999999999999999 45655 899999999999999
Q ss_pred cceecCC
Q 048635 531 NLVGQIP 537 (562)
Q Consensus 531 ~l~~~~p 537 (562)
++.+..|
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9987655
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.7e-38 Score=337.31 Aligned_cols=446 Identities=21% Similarity=0.177 Sum_probs=292.2
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
+++++|||++|+|++..+.+|.++++|++|+|++|.+ ....+.+|.++++|++|+|++|+++.+++ ..+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAF 120 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECG---GGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--------CCcChhHhcCCCCCCEEEccCCcCCCCCH---HHh
Confidence 4799999999999988888999999999999999985 35557789999999999999999998875 568
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc-cCChhhhCCCCccEEeccCCCCCCC
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQG 235 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~ 235 (562)
.++++|++|++++|.+++..+.. ++++++|++|++++|.++. ..|..+..+++|++|++++|.+...
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~------------~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFP------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCC------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCCEEECCCCcCCCCChhh------------hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 89999999999999998765433 5667789999999999975 4578888999999999999987665
Q ss_pred CCCCCCCCC----CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCccccc----------------------------
Q 048635 236 SLPNFPKNS----YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGP---------------------------- 283 (562)
Q Consensus 236 ~~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---------------------------- 283 (562)
....+..+. ....++++.|.+....+..+. ...++.+++.+|.....
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 554544433 345788999988755444332 23345555544422100
Q ss_pred ------------------------------CCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc-----
Q 048635 284 ------------------------------IPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN----- 328 (562)
Q Consensus 284 ------------------------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~----- 328 (562)
....+....+++.+.+.++.+... ..+.....++.|++.+|.+.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcc
Confidence 001111223344444444433321 12233445666666555433
Q ss_pred -----ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc--cCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635 329 -----GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG--VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401 (562)
Q Consensus 329 -----~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 401 (562)
..+.+..+....... ...+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred cchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 122222232221111 2345567777777766542 223333444555555555554433 22234445555
Q ss_pred CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-hC-CCcccccccccCcCCCCEEeC
Q 048635 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT-NK-RCRDQATEEMGRFKSLYALNM 479 (562)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~l~~l~~L~~L~L 479 (562)
+.+++..|....... ...+..+++++.++++.|.+.+..+..+.....+..+.. .+ ...+..|..+..+++|++|+|
T Consensus 423 ~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred cchhhhhcccccccc-ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 555555444432221 223344455555555555554443332222222222111 11 123456778899999999999
Q ss_pred cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCC----CCccccchHHH
Q 048635 480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKH----VLPNFNLHRRQ 552 (562)
Q Consensus 480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~----~~~~l~~~~~~ 552 (562)
++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++..|..+. .+..+++++|.
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999988899999999999999999999998899999999999999999999999998764 45556666544
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-37 Score=318.00 Aligned_cols=387 Identities=20% Similarity=0.227 Sum_probs=266.1
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCC-------------c
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRL-------------V 104 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~ 104 (562)
.++++++++++ .+ +.+ |.+|+++++|++|++++|.+++.+|.+++.+++| +
T Consensus 11 ~~L~~L~l~~n-~l-~~i--------------P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~ 74 (454)
T 1jl5_A 11 TFLQEPLRHSS-NL-TEM--------------PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74 (454)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred ccchhhhcccC-ch-hhC--------------ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCC
Confidence 67889999998 66 666 7789999999999999999999999999998875 9
Q ss_pred EEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhccccc
Q 048635 105 TLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR 184 (562)
Q Consensus 105 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 184 (562)
+|++++|.+. .+|. -.++|++|++++|.++.++. ..++|++|++++|.+.+...
T Consensus 75 ~L~l~~~~l~---------~lp~---~~~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~l~~------- 128 (454)
T 1jl5_A 75 ELELNNLGLS---------SLPE---LPPHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKALSD------- 128 (454)
T ss_dssp EEECTTSCCS---------CCCS---CCTTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSCCCS-------
T ss_pred EEEecCCccc---------cCCC---CcCCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCcccC-------
Confidence 9999999853 1222 13789999999999988653 24789999999998876321
Q ss_pred CCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCC
Q 048635 185 SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI 264 (562)
Q Consensus 185 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 264 (562)
..++|++|++++|.+++ +| .+..+++|++|++++|.+.. ++.. .++|++|++++|.+++ +| .+
T Consensus 129 ---------~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~--~~~L~~L~L~~n~l~~-l~-~~ 191 (454)
T 1jl5_A 129 ---------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL--PPSLEFIAAGNNQLEE-LP-EL 191 (454)
T ss_dssp ---------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC--CTTCCEEECCSSCCSS-CC-CC
T ss_pred ---------CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC--cccccEEECcCCcCCc-Cc-cc
Confidence 01579999999999985 66 58999999999999998753 3332 3589999999999986 45 68
Q ss_pred cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD 344 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~ 344 (562)
..+++|++|++++|.+++ +|... ++|++|++++|.+. ..+.+..+++|++|++++|.++ .+|.
T Consensus 192 ~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~------------~l~~ 254 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK------------TLPD 254 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS------------SCCS
T ss_pred cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC------------cccc
Confidence 999999999999999985 44332 58999999999998 4556889999999999999886 3443
Q ss_pred cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635 345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424 (562)
Q Consensus 345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 424 (562)
. .++|+.|++++|.+++ +|.. .++|++|++++|++++. +. -.++|++|++++|.+.+.... .
T Consensus 255 ~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~~~------~ 316 (454)
T 1jl5_A 255 L----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCDL------P 316 (454)
T ss_dssp C----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECCC------C
T ss_pred c----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcccCC------c
Confidence 2 3679999999999985 4443 47899999999999872 21 136899999999998864321 2
Q ss_pred CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCC
Q 048635 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 504 (562)
Q Consensus 425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls 504 (562)
++|++|++++|++.+ +|.. +++|+.|++++|.++ .+|. .+++|++|+++
T Consensus 317 ~~L~~L~Ls~N~l~~------------------------lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE------------------------LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE 365 (454)
T ss_dssp TTCCEEECCSSCCSC------------------------CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred CcCCEEECCCCcccc------------------------cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence 589999999999843 2322 478999999999998 5665 47899999999
Q ss_pred CCcccc--cChhhhcCC-------------CCCCeEeCcCCccee--cCCCCCCCCccccchHHH
Q 048635 505 MNNLSG--KIPAQLASL-------------NFLSVLNLSYNNLVG--QIPTAKHVLPNFNLHRRQ 552 (562)
Q Consensus 505 ~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~~~~ 552 (562)
+|++++ .+|..+..+ ++|++|++++|++++ .+|.. +..+.+..+.
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s---l~~L~~~~~~ 427 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES---VEDLRMNSER 427 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC--------------------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh---HhheeCcCcc
Confidence 999998 678888777 889999999999987 66644 4444444443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-37 Score=317.93 Aligned_cols=340 Identities=19% Similarity=0.176 Sum_probs=258.7
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCccc-CCccCCCCCCCcEEeCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGE-IPTEISSLPRLVTLDLSSREPISG 116 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 116 (562)
.++++||++++ .+.... +..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--- 91 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELN--------------ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--- 91 (455)
T ss_dssp TTCCEEECCSS-CCCEEC--------------TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT---
T ss_pred CccCEEEecCC-ccCcCC--------------hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc---
Confidence 57999999999 777665 66899999999999999998744 467799999999999999985
Q ss_pred CCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCC
Q 048635 117 FSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~ 196 (562)
....+..|+++++|++|++++|.+++..+. ...+..+++|++|++++|.+.+..|..+ +.+++
T Consensus 92 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~l~ 154 (455)
T 3v47_A 92 -----LQLETGAFNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASF-----------FLNMR 154 (455)
T ss_dssp -----CEECTTTTTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGG-----------GGGCT
T ss_pred -----CccChhhccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccc-----------cCCCC
Confidence 355678899999999999999998763221 1337889999999999999988765432 55677
Q ss_pred CCCEEEccCCcCcccCChhhhCC--CCccEEeccCCCCCCCCCCC--------CCCCCCCCEEEccCCcCCCCCCCCCcC
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQV--STLETLDLSYNPLLQGSLPN--------FPKNSYLQNLNLANTSFSGILPDPIGI 266 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~ 266 (562)
+|++|++++|.+++..+..+..+ .+|+.|++++|.+....... +..+++|++|++++|.+++..|..+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 89999999999998888888765 78999999999875544332 234688999999999998766655543
Q ss_pred ---CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCC
Q 048635 267 ---LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLS 343 (562)
Q Consensus 267 ---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~ 343 (562)
.++|+.|++++|...+.... ...++.+... .+. -...++|++|++++|.+. .++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~-----~~~-----~~~~~~L~~L~l~~n~l~------------~~~ 291 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNF-----TFK-----GLEASGVKTCDLSKSKIF------------ALL 291 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTT-----TTG-----GGTTSCCCEEECCSSCCC------------EEC
T ss_pred cccccceeeEeeccccccccccc-hhhhccCccc-----ccc-----cccccCceEEEecCcccc------------ccc
Confidence 37899999999987643211 1111111111 010 013467888888888776 333
Q ss_pred ccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCC
Q 048635 344 DIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS 423 (562)
Q Consensus 344 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 423 (562)
...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.. +..+..
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~ 369 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG--DQSFLG 369 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC--TTTTTT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC--hhhccc
Confidence 333888889999999999999888889999999999999999998877888888899999999988887654 444455
Q ss_pred CCCCCEEEcCCCcC
Q 048635 424 WPLLQIVDFASNKF 437 (562)
Q Consensus 424 ~~~L~~L~l~~n~~ 437 (562)
+++|++|++++|++
T Consensus 370 l~~L~~L~L~~N~l 383 (455)
T 3v47_A 370 LPNLKELALDTNQL 383 (455)
T ss_dssp CTTCCEEECCSSCC
T ss_pred cccccEEECCCCcc
Confidence 55555555555544
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-37 Score=323.86 Aligned_cols=391 Identities=21% Similarity=0.212 Sum_probs=278.5
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.+.. +..|.++++|++|++++|.+++..|++|.++++|++|++++|.+.
T Consensus 52 ~~L~~L~Ls~N-~i~~~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 113 (562)
T 3a79_B 52 PRTKALSLSQN-SISELR--------------MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ--- 113 (562)
T ss_dssp TTCCEEECCSS-CCCCCC--------------GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---
T ss_pred CCcCEEECCCC-CccccC--------------hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---
Confidence 67999999999 666554 568999999999999999999888999999999999999999853
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
.+|.. .+++|++|++++|.++.++. +..+..+++|++|++++|.+.+.. +.. +..+ +
T Consensus 114 ------~lp~~--~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~~---~~~---------l~~L-~ 170 (562)
T 3a79_B 114 ------NISCC--PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLD---LLP---------VAHL-H 170 (562)
T ss_dssp ------EECSC--CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTTT---TGG---------GTTS-C
T ss_pred ------ccCcc--ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccCc---hhh---------hhhc-e
Confidence 33433 79999999999999988653 257889999999999999987632 221 2222 3
Q ss_pred CCEEEccCCcC--cccCChhhhCCCC-ccEEeccCCCCCCCCCC-CCCCCC-----------------------------
Q 048635 198 LTNLDLSQCDL--RGKYPEKILQVST-LETLDLSYNPLLQGSLP-NFPKNS----------------------------- 244 (562)
Q Consensus 198 L~~L~l~~~~~--~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~-~~~~~~----------------------------- 244 (562)
|++|++++|.+ ++..|..+..+.. .-.++++.|.+...... .+..++
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 49999999998 7666766655430 11223333332211100 111223
Q ss_pred --------------------------CCCEEEccCCcCCCCCCCCC-----cCCCCCcEEEccCCcccccCC-ccCC---
Q 048635 245 --------------------------YLQNLNLANTSFSGILPDPI-----GILKYLTRVDLRSCSFTGPIP-TSTT--- 289 (562)
Q Consensus 245 --------------------------~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~l~--- 289 (562)
+|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~ 328 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF 328 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh
Confidence 34444444444443344333 2333333333333332 111 0111
Q ss_pred CCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc--C
Q 048635 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV--V 367 (562)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~ 367 (562)
...+|++|++++|.+.... ....+++|++|++++|.++ +.+|.. +..+++|+.|++++|++++. .
T Consensus 329 ~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~-----------~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFT-----------DSVFQG-CSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp HTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCC-----------TTTTTT-CCSCSSCCEEECCSSCCCBTTHH
T ss_pred ccCcceEEEccCCCccccc-CccCCCCceEEECCCCccc-----------cchhhh-hcccCCCCEEECCCCCcCCcccc
Confidence 1145777777777664321 2256778888888887765 445555 88899999999999999863 3
Q ss_pred CccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635 368 PKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS 446 (562)
Q Consensus 368 ~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 446 (562)
|..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++++.. +..+. ++|++|++++|+++
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~--~~L~~L~L~~N~l~-------- 463 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLP--PKVKVLDLHNNRIM-------- 463 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSSCC--TTCSEEECCSSCCC--------
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch--hhhhc--CcCCEEECCCCcCc--------
Confidence 5678999999999999999998444 45888999999999999997644 44333 79999999999983
Q ss_pred hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChh-ccCCCCCCeeeCCCCcccccCh
Q 048635 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIP 513 (562)
Q Consensus 447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p 513 (562)
.+|..+..+++|++|++++|+++ .+|.. |..+++|+.|++++|.+.+..+
T Consensus 464 ----------------~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 464 ----------------SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ----------------CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ----------------ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 56666778999999999999999 56655 9999999999999999987554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-35 Score=306.63 Aligned_cols=346 Identities=24% Similarity=0.335 Sum_probs=255.6
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
.+++|+.|+++++.+. .+|. +..+++|++|++++|.+. .. +. +.++++|++|++++|.+..++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~--------~~-~~-~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLT--------DI-TP-LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC--------CC-GG-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccC--------Cc-hh-hhccccCCEEECCCCccccCh-----
Confidence 4678999999999998 4564 888999999999999853 22 23 889999999999999998775
Q ss_pred ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ 234 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 234 (562)
.+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+ .+ .+..+++|+.|+++++ +
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~-- 167 (466)
T 1o6v_A 107 PLANLTNLTGLTLFNNQITDIDP--------------LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-V-- 167 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG--------------GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-C--
T ss_pred hhcCCCCCCEEECCCCCCCCChH--------------HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-c--
Confidence 27889999999999998876432 5667789999999998874 33 4788899999998743 3
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635 235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES 314 (562)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 314 (562)
.....+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. +.+..+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l 242 (466)
T 1o6v_A 168 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASL 242 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred cCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcC
Confidence 2334477788888888888887754 347778888888888888875444 66678888888888887643 456677
Q ss_pred CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW 394 (562)
Q Consensus 315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 394 (562)
++|++|++++|.+. .++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+
T Consensus 243 ~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 243 TNLTDLDLANNQIS------------NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp TTCSEEECCSSCCC------------CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--
T ss_pred CCCCEEECCCCccc------------cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--
Confidence 77888888777665 2222 5666777778887777775433 6677777777777777777444
Q ss_pred hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCC
Q 048635 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSL 474 (562)
Q Consensus 395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L 474 (562)
+..+++|++|++++|.+.+.. + +..+++|++|++++|++.+ . +.+..+++|
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l~~L 355 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDIS--P--VSSLTKLQRLFFYNNKVSD-----------------------V--SSLANLTNI 355 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCG--G--GGGCTTCCEEECCSSCCCC-----------------------C--GGGTTCTTC
T ss_pred hcCCCCCCEEECcCCcCCCch--h--hccCccCCEeECCCCccCC-----------------------c--hhhccCCCC
Confidence 667777777777777776543 2 5567777777777777632 1 345666777
Q ss_pred CEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 475 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 475 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777777777776655 6677777777777777764
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-36 Score=306.76 Aligned_cols=370 Identities=25% Similarity=0.284 Sum_probs=266.9
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCC-------------CEEEcc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKEL-------------RELYLD 141 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~l~ 141 (562)
+.++|++|++++|.+ +.+|++++++++|++|++++|.+ ....|..++++++| ++|+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~--------~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEW--------ERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp --------------------------CCHHHHHHHHHHH--------HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcc--------cccCCcccccchhcchhhhhhhhccCCCEEEec
Confidence 468999999999999 68999999999999999999974 45678888888764 999999
Q ss_pred CccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCC
Q 048635 142 NVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVST 221 (562)
Q Consensus 142 ~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 221 (562)
+|.+++++. ..++|++|++++|.+.+ .|.. .++|++|++++|.+++ ++.. .++
T Consensus 80 ~~~l~~lp~-------~~~~L~~L~l~~n~l~~-lp~~---------------~~~L~~L~l~~n~l~~-l~~~---~~~ 132 (454)
T 1jl5_A 80 NLGLSSLPE-------LPPHLESLVASCNSLTE-LPEL---------------PQSLKSLLVDNNNLKA-LSDL---PPL 132 (454)
T ss_dssp TSCCSCCCS-------CCTTCSEEECCSSCCSS-CCCC---------------CTTCCEEECCSSCCSC-CCSC---CTT
T ss_pred CCccccCCC-------CcCCCCEEEccCCcCCc-cccc---------------cCCCcEEECCCCccCc-ccCC---CCC
Confidence 999988764 24789999999999887 3321 2579999999999884 3321 268
Q ss_pred ccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcC
Q 048635 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301 (562)
Q Consensus 222 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 301 (562)
|++|++++|.+.. ++.+..+++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .++.+++|++|++++
T Consensus 133 L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 133 LEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCC--CcccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 9999999998754 5578889999999999999985 4543 3589999999999986 55 689999999999999
Q ss_pred CcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEE
Q 048635 302 NHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLD 381 (562)
Q Consensus 302 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 381 (562)
|.+.+.... .++|++|++++|.++ .+|. +..+++|+.|++++|++++ +|.. +++|++|+
T Consensus 205 N~l~~l~~~---~~~L~~L~l~~n~l~------------~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 263 (454)
T 1jl5_A 205 NSLKKLPDL---PLSLESIVAGNNILE------------ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALN 263 (454)
T ss_dssp SCCSSCCCC---CTTCCEEECCSSCCS------------SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEE
T ss_pred CcCCcCCCC---cCcccEEECcCCcCC------------cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEE
Confidence 999864322 358999999999876 5663 7888999999999999985 4442 47899999
Q ss_pred cccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCc
Q 048635 382 FRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR 461 (562)
Q Consensus 382 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (562)
+++|++.+ +|.. +++|++|++++|.+.+...+ .++|++|++++|++.+
T Consensus 264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~------~~~L~~L~l~~N~l~~---------------------- 311 (454)
T 1jl5_A 264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRS---------------------- 311 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC------CTTCCEEECCSSCCSE----------------------
T ss_pred CCCCcccc-cCcc---cCcCCEEECcCCccCcccCc------CCcCCEEECcCCcCCc----------------------
Confidence 99999988 4433 47899999999999875422 2689999999999842
Q ss_pred ccccccccCc-CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee--cCCC
Q 048635 462 DQATEEMGRF-KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG--QIPT 538 (562)
Q Consensus 462 ~~~~~~l~~l-~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~ 538 (562)
+..+ ++|+.|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.
T Consensus 312 ------i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 312 ------LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp ------ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ------ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 1122 589999999999995 6654 589999999999999 5676 47899999999999998 7777
Q ss_pred CC----------------CCCccccchHHHHhh
Q 048635 539 AK----------------HVLPNFNLHRRQLQA 555 (562)
Q Consensus 539 ~~----------------~~~~~l~~~~~~l~~ 555 (562)
.+ ..+..+++++|++++
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCC------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 65 345666666666654
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-35 Score=304.85 Aligned_cols=344 Identities=25% Similarity=0.336 Sum_probs=255.5
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++|+++++ .+.. + +.+..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 46 ~~l~~L~l~~~-~i~~-l---------------~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~--- 103 (466)
T 1o6v_A 46 DQVTTLQADRL-GIKS-I---------------DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA--- 103 (466)
T ss_dssp HTCCEEECCSS-CCCC-C---------------TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC---
T ss_pred ccccEEecCCC-CCcc-C---------------cchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc---
Confidence 57788888777 4332 1 2467788888888888888854 33 888888888888888752
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
.. +. +.++++|++|++++|.+++++ .+..+++|++|++++|.+.+.. .+..+++
T Consensus 104 -----~~-~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~ 157 (466)
T 1o6v_A 104 -----DI-TP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDIS--------------ALSGLTS 157 (466)
T ss_dssp -----CC-GG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCG--------------GGTTCTT
T ss_pred -----cC-hh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCCh--------------hhccCCc
Confidence 22 22 788888888888888887764 3778888888888888776531 1556777
Q ss_pred CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 277 (562)
|++|++.+ .+.+. ..+..+++|+.|++++|.+.. .+.+..+++|++|++++|.+.+..+ ++.+++|++|++++
T Consensus 158 L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 230 (466)
T 1o6v_A 158 LQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230 (466)
T ss_dssp CSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred ccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCC
Confidence 88888863 44322 237788888888888887633 3456678888888888888876544 66788888888888
Q ss_pred CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357 (562)
Q Consensus 278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 357 (562)
|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|+.|+
T Consensus 231 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 231 NQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS------------NISP--LAGLTALTNLE 293 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC------------CCGG--GTTCTTCSEEE
T ss_pred CCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC------------cccc--ccCCCccCeEE
Confidence 888743 357778888888888888876544 777888888888888776 3333 66778888888
Q ss_pred CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+++|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCC
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCcc
Confidence 88888876443 6778888888888888888655 67788888888888888753 3567788888888888887
Q ss_pred CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635 438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486 (562)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~ 486 (562)
.+ ..| +..+++|+.|++++|.+++
T Consensus 366 ~~-----------------------~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 366 SD-----------------------LTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CB-----------------------CGG--GTTCTTCCEEECCCEEEEC
T ss_pred Cc-----------------------cch--hhcCCCCCEEeccCCcccC
Confidence 43 222 6777888888888888875
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=303.66 Aligned_cols=347 Identities=20% Similarity=0.201 Sum_probs=195.5
Q ss_pred ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635 72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE 151 (562)
Q Consensus 72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 151 (562)
.++++++|++|++++|.+++ +| .+..+++|++|++++|.+. . ++ ++.+++|++|++++|.++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~--------~-~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNIT--------T-LD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCS--------C-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCC--------e-Ec--cccCCCCCEEECcCCCCceee--
Confidence 45556666666666666664 34 4666666666666666642 1 11 566666666666666666542
Q ss_pred cccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635 152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 231 (562)
+..+++|++|++++|.+.+.. ++.+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 102 ----~~~l~~L~~L~L~~N~l~~l~---------------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 102 ----VTPLTKLTYLNCDTNKLTKLD---------------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSCCC---------------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCS
T ss_pred ----cCCCCcCCEEECCCCcCCeec---------------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCC
Confidence 455666666666666665421 34455666666666666642 25566666666666663
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC
Q 048635 232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311 (562)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 311 (562)
... .+ .+..+++|++|++++|.+++. | +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+. | +
T Consensus 160 ~~~-~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~ 229 (457)
T 3bz5_A 160 KIT-KL-DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-V 229 (457)
T ss_dssp CCC-CC-CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-C
T ss_pred ccc-cc-ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-c
Confidence 221 11 345566666666666666642 2 55666666666666666643 255666666666666666652 2 5
Q ss_pred CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC----------CcccccCCccCCCCCCCCEEE
Q 048635 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG----------NQLQGVVPKSLANCNMLQVLD 381 (562)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~----------n~l~~~~~~~l~~l~~L~~L~ 381 (562)
..+++|++|++++|.++ .+| ...+++|+.|++++ |.+.+.+| +..+++|+.|+
T Consensus 230 ~~l~~L~~L~l~~N~l~------------~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLT------------ELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELD 292 (457)
T ss_dssp TTCTTCSEEECCSSCCS------------CCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred cccCCCCEEEeeCCcCC------------CcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEE
Confidence 56666666666666655 222 22333344444433 33222222 22334444444
Q ss_pred cccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCc
Q 048635 382 FRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR 461 (562)
Q Consensus 382 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (562)
+++|...+.+|. ..++|+.|+ +..+++|++|++++|++++
T Consensus 293 Ls~n~~l~~l~~---~~~~L~~L~---------------l~~~~~L~~L~L~~N~l~~---------------------- 332 (457)
T 3bz5_A 293 VTHNTQLYLLDC---QAAGITELD---------------LSQNPKLVYLYLNNTELTE---------------------- 332 (457)
T ss_dssp CTTCTTCCEEEC---TTCCCSCCC---------------CTTCTTCCEEECTTCCCSC----------------------
T ss_pred CCCCcccceecc---CCCcceEec---------------hhhcccCCEEECCCCcccc----------------------
Confidence 444443333331 122233222 2334567777777777632
Q ss_pred ccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635 462 DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539 (562)
Q Consensus 462 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 539 (562)
+ .+..+++|+.|++++|++++ ++.|+.|++++|+++|. ..+..|+.+++++|+++|.+|..
T Consensus 333 --l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 333 --L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp --C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred --c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 1 15666777777777777774 24455666777777654 24456777777778877777764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-34 Score=296.46 Aligned_cols=312 Identities=22% Similarity=0.178 Sum_probs=254.4
Q ss_pred CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635 38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117 (562)
Q Consensus 38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 117 (562)
.++++||++++ .+.+. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+.
T Consensus 42 ~~L~~L~Ls~n-~l~~~---------------~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~--- 98 (457)
T 3bz5_A 42 ATLTSLDCHNS-SITDM---------------T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT--- 98 (457)
T ss_dssp TTCCEEECCSS-CCCCC---------------T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS---
T ss_pred CCCCEEEccCC-CcccC---------------h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc---
Confidence 68999999998 55532 2 578899999999999999964 4 899999999999999863
Q ss_pred CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~ 197 (562)
. .+ ++++++|++|++++|.++.++ +..+++|++|++++|.+++.. ++.+++
T Consensus 99 -----~-~~--~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l~---------------l~~l~~ 149 (457)
T 3bz5_A 99 -----N-LD--VTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEID---------------VSHNTQ 149 (457)
T ss_dssp -----C-CC--CTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCCC---------------CTTCTT
T ss_pred -----e-ee--cCCCCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCccceec---------------cccCCc
Confidence 2 22 889999999999999998763 678999999999999987742 556788
Q ss_pred CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277 (562)
Q Consensus 198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 277 (562)
|++|++++|...+.+ .+..+++|+.|++++|.+... + +..+++|+.|++++|.+++. .+..+++|++|++++
T Consensus 150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l--~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL--D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221 (457)
T ss_dssp CCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC--C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred CCEEECCCCCccccc--ccccCCcCCEEECCCCcccee--c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence 999999999655454 477899999999999987553 3 77789999999999999875 478899999999999
Q ss_pred CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357 (562)
Q Consensus 278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 357 (562)
|.+++ +| +..+++|+.|++++|.+.+.. ...+++|+.|++++|.+. .+++++|.+.+.+| +..+++|+.|+
T Consensus 222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~-~L~l~~n~~~~~~~---~~~l~~L~~L~ 292 (457)
T 3bz5_A 222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQ---AEGCRKIKELD 292 (457)
T ss_dssp SCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCS-CCCCTTCTTCCEEE---CTTCTTCCCCC
T ss_pred Ccccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCC-EEECCCCccCCccc---ccccccCCEEE
Confidence 99996 45 888999999999999998754 567899999999999885 67889998888877 56778999999
Q ss_pred CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+++|...+.+|. ..++|+.|++++| ++|++|++++|++++. .+..+++|+.|++++|++
T Consensus 293 Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-----~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 293 VTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-----DVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-----CCTTCTTCSEEECCSSCC
T ss_pred CCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-----ccccCCcCcEEECCCCCC
Confidence 999987766653 3345555555444 5777788888877752 266777788888888777
Q ss_pred CC
Q 048635 438 GG 439 (562)
Q Consensus 438 ~~ 439 (562)
++
T Consensus 352 ~~ 353 (457)
T 3bz5_A 352 QD 353 (457)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=294.79 Aligned_cols=346 Identities=18% Similarity=0.137 Sum_probs=236.7
Q ss_pred EEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhh
Q 048635 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI 216 (562)
Q Consensus 137 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 216 (562)
.++.+++.++.++.. + .+++++|++++|.+.+..+.. +.++++|++|++++|.+++..|..|
T Consensus 15 ~v~c~~~~l~~ip~~----~--~~~l~~L~L~~n~l~~~~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG----I--PTETRLLDLGKNRIKTLNQDE------------FASFPHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp EEECCSCCCSSCCSC----C--CTTCSEEECCSSCCCEECTTT------------TTTCTTCCEEECTTSCCCEECTTTT
T ss_pred EEEeCCCCcCcCCCC----C--CCCCcEEECCCCccceECHhH------------ccCCCCCCEEECCCCccCEeChhhh
Confidence 445555555555431 1 235666666666665544332 3344556666666666666666666
Q ss_pred hCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635 217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296 (562)
Q Consensus 217 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (562)
.++++|++|++++|.+.......|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 67777777777777665544445666777777777777777666667777777777777777777666667777777777
Q ss_pred eeCcCCcccccCCC-CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635 297 VDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN 375 (562)
Q Consensus 297 L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 375 (562)
|++++|.+.+..+. +..+++|+.|++++|.+. .++...+..+++|+.|++++|...+.++.......
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCc------------EeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 77777777654332 466777777777777765 34444477778888888888776666666666666
Q ss_pred CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhh
Q 048635 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455 (562)
Q Consensus 376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~ 455 (562)
+|++|++++|++++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~----------------- 285 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--GSMLHELLRLQEIQLVGGQLA----------------- 285 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC--TTSCTTCTTCCEEECCSSCCS-----------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC--hhhccccccCCEEECCCCccc-----------------
Confidence 8888888888888766677888888888888888888766 667788888888888888873
Q ss_pred hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceec
Q 048635 456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 456 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+....+..+. ......+.+.++.....
T Consensus 286 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~-~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 286 ------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV-FRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp ------EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH-HTTTTSSCCTTCCCBEE
T ss_pred ------eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH-HhhhhccccCccCceeC
Confidence 44456677888888888888888876667788888888888888888743222111 12334445555554444
Q ss_pred CCC
Q 048635 536 IPT 538 (562)
Q Consensus 536 ~p~ 538 (562)
-|.
T Consensus 359 ~p~ 361 (477)
T 2id5_A 359 TPE 361 (477)
T ss_dssp ESG
T ss_pred Cch
Confidence 443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=296.56 Aligned_cols=321 Identities=17% Similarity=0.152 Sum_probs=281.2
Q ss_pred CEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCC
Q 048635 163 QVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242 (562)
Q Consensus 163 ~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 242 (562)
+.++.+++.++.. |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.......|..
T Consensus 14 ~~v~c~~~~l~~i-p~~~--------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGI--------------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSC-CSCC--------------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCcC-CCCC--------------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 4667777666543 2221 247999999999999888899999999999999999887776778999
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEE
Q 048635 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLD 321 (562)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~ 321 (562)
+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 9999999999999997777778999999999999999998888899999999999999999987654 578899999999
Q ss_pred cCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635 322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401 (562)
Q Consensus 322 l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 401 (562)
+++|.++ .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|
T Consensus 159 l~~n~l~------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 159 LEKCNLT------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp EESCCCS------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCcCc------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 9999887 6676668999999999999999998888899999999999999998887777666667799
Q ss_pred CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481 (562)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 481 (562)
++|++++|.+.... ...+..+++|++|++++|++. +..+..+..+++|++|++++
T Consensus 227 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 227 TSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPIS-----------------------TIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp SEEEEESSCCCSCC--HHHHTTCTTCCEEECCSSCCC-----------------------EECTTSCTTCTTCCEEECCS
T ss_pred cEEECcCCcccccC--HHHhcCccccCeeECCCCcCC-----------------------ccChhhccccccCCEEECCC
Confidence 99999999998543 346788999999999999984 34455678899999999999
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceec
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
|.+++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999988899999999999999999999988888889999999999999999854
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-33 Score=279.21 Aligned_cols=312 Identities=21% Similarity=0.231 Sum_probs=233.4
Q ss_pred CCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc
Q 048635 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG 210 (562)
Q Consensus 131 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 210 (562)
.++++++|+++++.++.++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~------------~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYA------------FAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GGCCCSEEEEESCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTT------------TTTCTTCCEEECCSSCCCC
T ss_pred ccCCceEEEecCCchhhCCh---hHhcccccCcEEECCCCcccccChhh------------ccCCCCcCEEECCCCCCCc
Confidence 36789999999999988875 44677899999999999887765443 4556779999999999988
Q ss_pred cCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCC
Q 048635 211 KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN 290 (562)
Q Consensus 211 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 290 (562)
..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~ 184 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 184 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG
T ss_pred CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc
Confidence 7788888899999999999987654444567788899999999988877777788888899999998888753 2556
Q ss_pred CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635 291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370 (562)
Q Consensus 291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 370 (562)
+++|+.+++++|.+.+.. ..++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..
T Consensus 185 l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~------------~~~~~---~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN------------VVRGP---VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC------------EEECC---CCSSCCEEECCSSCCCCC--GG
T ss_pred ccccceeecccccccccC----CCCcceEEECCCCeee------------ecccc---ccccccEEECCCCCCccc--HH
Confidence 788888888888776432 2356888888888776 22222 234678888888887743 46
Q ss_pred CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. +.....+++|++|++++|++.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~L~~n~l~------------ 308 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLL------------ 308 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE---ECSSSCCTTCCEEECCSSCCC------------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc---CcccCCCCCCCEEECCCCcce------------
Confidence 77778888888888888777777777788888888888877754 344456777777777777762
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
.+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|+++..
T Consensus 309 ------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 309 ------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ------------ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 3444456667777777777777733 3 56677777777777777653
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-35 Score=283.33 Aligned_cols=272 Identities=29% Similarity=0.422 Sum_probs=229.5
Q ss_pred CCCCCCCCCCCCCC--cceeeeCCC---CCeEEEECCCCCCcce--eecCCCCCcCcccccCccccCCCCCCCEEecCC-
Q 048635 15 AKMSQWSDSTNCCD--WTGVDCDEA---GHVIGLDLSAEPILIG--RLENASGLFSLQYMQSQFGLANLTNLTYLNLSH- 86 (562)
Q Consensus 15 ~~~~~w~~~~~~c~--w~g~~c~~~---~~v~~Ldl~~~~~~~~--~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~- 86 (562)
..++.|..+.+||. |.||.|... ++|++|+++++ .+.+ .+ |..|.++++|++|++++
T Consensus 22 ~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-~l~~~~~~--------------~~~l~~l~~L~~L~L~~~ 86 (313)
T 1ogq_A 22 TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPI--------------PSSLANLPYLNFLYIGGI 86 (313)
T ss_dssp GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEEC--------------CGGGGGCTTCSEEEEEEE
T ss_pred ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-CccCCccc--------------ChhHhCCCCCCeeeCCCC
Confidence 36789988889998 999999865 79999999999 7776 55 67899999999999995
Q ss_pred ccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEe
Q 048635 87 CGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLN 166 (562)
Q Consensus 87 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~ 166 (562)
|.+.+.+|..|+++++|++|++++|.+ ....|..|.++++|++|++++|.++...+ ..+..+++|++|+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGIT 155 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECC--------EEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEE
T ss_pred CcccccCChhHhcCCCCCEEECcCCee--------CCcCCHHHhCCCCCCEEeCCCCccCCcCC---hHHhcCCCCCeEE
Confidence 899989999999999999999999984 35678889999999999999999985443 5678899999999
Q ss_pred cccCCCCCccchhcccccCCCCcccccCCC-CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCC
Q 048635 167 LSSCLLLGPINHHLANLRSHSQFFFVANLL-NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY 245 (562)
Q Consensus 167 l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 245 (562)
+++|.+.+..|..+.. ++ +|++|++++|.+++..|..+..++ |+.|++++|.+.......+..+++
T Consensus 156 L~~N~l~~~~p~~l~~------------l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGS------------FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp CCSSCCEEECCGGGGC------------CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred CcCCcccCcCCHHHhh------------hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 9999998777665544 44 799999999999988999998887 999999998876555556777888
Q ss_pred CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN 325 (562)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 325 (562)
|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|....+++|+.+++++|
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 99999998888766554 67788888899988888888888888888888888888888877777677777777777777
Q ss_pred C
Q 048635 326 N 326 (562)
Q Consensus 326 ~ 326 (562)
+
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 5
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.7e-33 Score=274.62 Aligned_cols=307 Identities=23% Similarity=0.337 Sum_probs=197.7
Q ss_pred ccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcC
Q 048635 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDL 208 (562)
Q Consensus 129 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 208 (562)
+..+++|++|+++++.+..++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~L~~n~i 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-----GIEYLTNLEYLNLNGNQITDISP--------------LSNLVKLTNLYIGTNKI 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEECCSSCC
T ss_pred chhcccccEEEEeCCccccch-----hhhhcCCccEEEccCCccccchh--------------hhcCCcCCEEEccCCcc
Confidence 344555666666666555442 24455555555555555443221 23334455555555544
Q ss_pred cccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccC
Q 048635 209 RGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST 288 (562)
Q Consensus 209 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 288 (562)
+. ++.+..+++|++|++++|.+.+..+ +..+++|++|++++|...... ..+
T Consensus 101 ~~--------------------------~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~ 151 (347)
T 4fmz_A 101 TD--------------------------ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPL 151 (347)
T ss_dssp CC--------------------------CGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGG
T ss_pred cC--------------------------chHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cch
Confidence 42 2234444455555555555443211 455555666666655443222 225
Q ss_pred CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635 289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368 (562)
Q Consensus 289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (562)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+.+++++|.+.+..+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE------------DISP--LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC------------CCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc------------cccc--ccCCCccceeecccCCCCCCch
Confidence 556666666666666554332 556666777777666654 2222 5556677788888777775433
Q ss_pred ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448 (562)
Q Consensus 369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 448 (562)
+..+++|++|++++|++++..+ +..+++|++|++++|.+... ..+..+++|++|++++|++.+
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~--------- 279 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISD--------- 279 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCC---------
T ss_pred --hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCC---------
Confidence 6677888888888888877544 77788888888888887653 346778888888888888732
Q ss_pred hhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635 449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 528 (562)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 528 (562)
+ +.+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..| +..+++|++|+++
T Consensus 280 ---------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 280 ---------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp ---------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred ---------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 1 346778999999999999998888889999999999999999997666 8889999999999
Q ss_pred CCcce
Q 048635 529 YNNLV 533 (562)
Q Consensus 529 ~n~l~ 533 (562)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 99986
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=277.62 Aligned_cols=311 Identities=19% Similarity=0.165 Sum_probs=256.2
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
.++++++|+++++.++...+..+..+++|++|++++|.+. ...+..|.++++|++|++++|.++.+++ .
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIRYLPP---H 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCCCCT---T
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc--------ccChhhccCCCCcCEEECCCCCCCcCCH---H
Confidence 4688999999999998655555788999999999999853 4455678999999999999999988875 4
Q ss_pred ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ 234 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 234 (562)
.+..+++|++|++++|.+....+.. +.++++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGI------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred HhcCCCCCCEEECCCCccCcCCHHH------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 6788999999999999887544322 4567789999999999998888889999999999999998754
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635 235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES 314 (562)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 314 (562)
. .+..+++|+.|++++|.+++. ...+.|++|++++|.+... +.. ..++|+.|++++|.+.+. +.+..+
T Consensus 180 ~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~~l~~l 247 (390)
T 3o6n_A 180 V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-AWLLNY 247 (390)
T ss_dssp C---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-GGGGGC
T ss_pred c---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-HHHcCC
Confidence 4 355678899999999988643 3456899999999999854 332 347899999999999864 567889
Q ss_pred CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW 394 (562)
Q Consensus 315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 394 (562)
++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++..+..+++|++|++++|++.+ +|..
T Consensus 248 ~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 313 (390)
T 3o6n_A 248 PGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN 313 (390)
T ss_dssp TTCSEEECCSSCCC------------EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG
T ss_pred CCccEEECCCCcCC------------CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcc
Confidence 99999999999886 3333338889999999999999985 56667889999999999999987 5666
Q ss_pred hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
+..+++|++|++++|.+... .+..+++|++|++++|++..
T Consensus 314 ~~~l~~L~~L~L~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp HHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEH
T ss_pred ccccCcCCEEECCCCcccee-----CchhhccCCEEEcCCCCccc
Confidence 88899999999999999743 36788999999999999854
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.7e-32 Score=270.31 Aligned_cols=308 Identities=21% Similarity=0.278 Sum_probs=239.2
Q ss_pred ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635 72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE 151 (562)
Q Consensus 72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 151 (562)
.+..+++|++|+++++.+. .++. +..+++|++|++++|.+. . .+. +.++++|++|++++|.++.+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~--------~-~~~-~~~l~~L~~L~L~~n~i~~~--- 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT--------D-ISP-LSNLVKLTNLYIGTNKITDI--- 103 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC--------C-CGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred cchhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccc--------c-chh-hhcCCcCCEEEccCCcccCc---
Confidence 3456778888888888887 3443 778888888888888742 2 222 77888888888888888765
Q ss_pred cccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635 152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 231 (562)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|+.|++++|.
T Consensus 104 --~~~~~l~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 104 --SALQNLTNLRELYLNEDNISDISP--------------LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp --GGGTTCTTCSEEECTTSCCCCCGG--------------GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSC
T ss_pred --hHHcCCCcCCEEECcCCcccCchh--------------hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCC
Confidence 357788888888888887765422 456677888888888655343 347788888888888887
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC
Q 048635 232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311 (562)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 311 (562)
+.. .+.+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.+..+ +
T Consensus 167 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~ 239 (347)
T 4fmz_A 167 VKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L 239 (347)
T ss_dssp CCC--CGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred cCC--chhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence 533 3336778888999998888875432 7788889999999998875433 7788899999999998886554 7
Q ss_pred CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF 391 (562)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 391 (562)
..+++|++|++++|.++ .++ .+..+++|+.|++++|.+++. ..+..+++|++|++++|++.+..
T Consensus 240 ~~l~~L~~L~l~~n~l~------------~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQIS------------DIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp TTCTTCCEEECCSSCCC------------CCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred hcCCCCCEEECCCCccC------------CCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence 78899999999998876 332 277888999999999998864 45788999999999999999888
Q ss_pred hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCC
Q 048635 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG 438 (562)
Q Consensus 392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~ 438 (562)
+..+..+++|++|++++|++++.. + +..+++|++|++++|+++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIR--P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCG--G--GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCcccccc--C--hhhhhccceeehhhhccc
Confidence 888999999999999999998654 3 778999999999999873
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-32 Score=287.81 Aligned_cols=313 Identities=21% Similarity=0.234 Sum_probs=252.9
Q ss_pred CCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc
Q 048635 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG 210 (562)
Q Consensus 131 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 210 (562)
.+++++.++++++.+..+++ ..+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~---~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~~l~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYA------------FAYAHTIQKLYMGFNAIRY 113 (597)
T ss_dssp GGCCCSEEEESSCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTT------------TTTCTTCCEEECCSSCCCC
T ss_pred cCCCceEEEeeCCCCCCcCH---HHHccCCCCcEEECCCCCCCCCChHH------------hcCCCCCCEEECCCCcCCC
Confidence 36789999999999998876 45677899999999999988766544 4566789999999999998
Q ss_pred cCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCC
Q 048635 211 KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN 290 (562)
Q Consensus 211 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 290 (562)
..|..|..+++|+.|++++|.+.......|..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~ 190 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGG
T ss_pred CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhh
Confidence 8888889999999999999988655555578899999999999999988888899999999999999998854 2566
Q ss_pred CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635 291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370 (562)
Q Consensus 291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 370 (562)
+++|+.|++++|.+.+. ...++|+.|++++|.+. .++... .++|+.|++++|.+++ +..
T Consensus 191 l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~------------~~~~~~---~~~L~~L~L~~n~l~~--~~~ 249 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN------------VVRGPV---NVELTILKLQHNNLTD--TAW 249 (597)
T ss_dssp CTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCC------------EEECSC---CSCCCEEECCSSCCCC--CGG
T ss_pred hhhhhhhhcccCccccc----cCCchhheeeccCCccc------------cccccc---CCCCCEEECCCCCCCC--Chh
Confidence 78899999999988753 23457899999988876 222221 2468999999998885 367
Q ss_pred CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+. +.....+++|++|++++|.+.
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~Ls~N~l~------------ 314 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLL------------ 314 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE---ECSSSCCTTCCEEECCSSCCC------------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC---CcccccCCCCcEEECCCCCCC------------
Confidence 78889999999999999888888888899999999999988864 455567888899999888873
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI 512 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 512 (562)
.+|..+..+++|+.|++++|.+++. | +..+++|+.|++++|.+.+..
T Consensus 315 ------------~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 315 ------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ------------ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 3555667788888899998888844 3 667788888888888887643
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=289.10 Aligned_cols=313 Identities=19% Similarity=0.168 Sum_probs=257.4
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
.+.+++.+++++|.+....+..|..+++|++|++++|.+ ....+..|.++++|++|++++|.++.+++ .
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP---H 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCT---T
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCCCCCEEECCCCcCCCCCH---H
Confidence 467889999999999866666678899999999999985 34556688899999999999999988875 4
Q ss_pred ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ 234 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 234 (562)
.+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGI------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHH------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 6788999999999999887654332 4567789999999999998888889999999999999998754
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635 235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES 314 (562)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 314 (562)
. .+..+++|+.|++++|.+++ +...++|+.|++++|.+....+. + .++|+.|++++|.+.+. +.+..+
T Consensus 186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~-~~l~~l 253 (597)
T 3oja_B 186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT-AWLLNY 253 (597)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC-GGGGGC
T ss_pred c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC-hhhccC
Confidence 3 34557889999999998764 34456899999999998744332 2 36899999999999864 567889
Q ss_pred CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW 394 (562)
Q Consensus 315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 394 (562)
++|+.|++++|.+. +..|.. +..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.+.. +|..
T Consensus 254 ~~L~~L~Ls~N~l~-----------~~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~ 319 (597)
T 3oja_B 254 PGLVEVDLSYNELE-----------KIMYHP-FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN 319 (597)
T ss_dssp TTCSEEECCSSCCC-----------EEESGG-GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG
T ss_pred CCCCEEECCCCccC-----------CCCHHH-hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcc
Confidence 99999999999876 233444 8889999999999999986 56677889999999999999996 6777
Q ss_pred hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441 (562)
Q Consensus 395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 441 (562)
+..+++|++|++++|.+.+. .+..+++|+.|++++|++.+..
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCCEEECCCCCCCCc-----ChhhcCCCCEEEeeCCCCCChh
Confidence 88899999999999999743 3677899999999999986543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=248.61 Aligned_cols=270 Identities=17% Similarity=0.210 Sum_probs=134.7
Q ss_pred CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276 (562)
Q Consensus 197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 276 (562)
++++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.++. +|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence 45555555555554444455555555555555555443333444445555555555555542 222221 445555555
Q ss_pred CCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356 (562)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L 356 (562)
+|.+++..+..+..+++|++|++++|.+... .+....+..+++|+.|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------------~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------------------GIENGAFQGMKKLSYI 176 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------------------GBCTTGGGGCTTCCEE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCcc---------------------------------CcChhhccCCCCcCEE
Confidence 5555443333444445555555555444320 0111124444455555
Q ss_pred ECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436 (562)
Q Consensus 357 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 436 (562)
++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|+
T Consensus 177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSC
T ss_pred ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCc
Confidence 555555442 222221 45555555555555544455555555555555555555443 3444555555555555555
Q ss_pred CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC------CCCCCeeeCCCCcccc
Q 048635 437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN------LKQIESLDLSMNNLSG 510 (562)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~------l~~L~~L~Ls~n~l~~ 510 (562)
+. .+|..+..+++|++|++++|.+++..+..|.. .+.|+.|++++|.+..
T Consensus 252 l~------------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 252 LV------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CS------------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred Cc------------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 41 33444555566666666666666444444432 2556666666666642
Q ss_pred --cChhhhcCCCCCCeEeCcCCc
Q 048635 511 --KIPAQLASLNFLSVLNLSYNN 531 (562)
Q Consensus 511 --~~p~~l~~l~~L~~L~l~~n~ 531 (562)
..|..+..+.+++.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 445566666677777776663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.9e-30 Score=252.11 Aligned_cols=287 Identities=18% Similarity=0.184 Sum_probs=151.1
Q ss_pred CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCC
Q 048635 161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF 240 (562)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 240 (562)
+++.++++++.+... |..+ .+++++|++++|.+++..+..+..+++|++|++++|.+.......+
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--------------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--------------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCcccc-CCCC--------------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 567777776665432 2111 1356667777776665555566666666666666666544444455
Q ss_pred CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccc--cC-CCCCCCCCC
Q 048635 241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG--PI-PSFHESRNL 317 (562)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~~~~~~~L 317 (562)
..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. .. ..+..+ +|
T Consensus 99 ~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 556666666666666652 333222 556666666666654444445566666666666665542 11 122333 45
Q ss_pred CEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635 318 NYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397 (562)
Q Consensus 318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 397 (562)
++|++++|.++ .+|...+ ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..
T Consensus 175 ~~L~l~~n~l~------------~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 175 NYLRISEAKLT------------GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCCBCCSSBCS------------SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CEEECcCCCCC------------ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 55555555443 2332211 24455555555554444444445555555555555554444444444
Q ss_pred CCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635 398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477 (562)
Q Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L 477 (562)
+++|++|++++|++. .+|..+..+++|+.|
T Consensus 240 l~~L~~L~L~~N~l~--------------------------------------------------~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS--------------------------------------------------RVPAGLPDLKLLQVV 269 (332)
T ss_dssp CTTCCEEECCSSCCC--------------------------------------------------BCCTTGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCe--------------------------------------------------ecChhhhcCccCCEE
Confidence 444444444444443 233344555556666
Q ss_pred eCcCCcCccCcChhccC------CCCCCeeeCCCCccc--ccChhhhcCCCCCCeEeCcCCc
Q 048635 478 NMSHNALTGSIPSSFGN------LKQIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYNN 531 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l~~n~ 531 (562)
++++|.+++..+..|.. .+.|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66666655444444433 245666666666665 4556666666667777666663
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.4e-31 Score=257.60 Aligned_cols=251 Identities=27% Similarity=0.423 Sum_probs=200.4
Q ss_pred CCCCEEEccCCcCCC--CCCCCCcCCCCCcEEEccC-CcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCE
Q 048635 244 SYLQNLNLANTSFSG--ILPDPIGILKYLTRVDLRS-CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNY 319 (562)
Q Consensus 244 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~ 319 (562)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..+ .+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 457777777777776 6677777777788888874 77777777777777788888888777775444 3567777777
Q ss_pred EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC-CCCEEEcccCCCCCcchHHhhcC
Q 048635 320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN-MLQVLDFRNNHISDNFPCWLRNA 398 (562)
Q Consensus 320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l 398 (562)
|++++|.++ +.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+..|..+..+
T Consensus 130 L~Ls~N~l~-----------~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 130 LDFSYNALS-----------GTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp EECCSSEEE-----------SCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred EeCCCCccC-----------CcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 777777654 345554 77778888888888888878888888887 88999999998887788888888
Q ss_pred CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEe
Q 048635 399 SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALN 478 (562)
Q Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 478 (562)
+ |++|++++|.+.+.. +..+..+++|++|++++|.+.+. . +.+..+++|++|+
T Consensus 198 ~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-----------------------~-~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD-----------------------L-GKVGLSKNLNGLD 250 (313)
T ss_dssp C-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCB-----------------------G-GGCCCCTTCCEEE
T ss_pred c-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeee-----------------------c-CcccccCCCCEEE
Confidence 6 999999999888755 77778888999999999888432 2 2266788999999
Q ss_pred CcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCc-cee
Q 048635 479 MSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-LVG 534 (562)
Q Consensus 479 Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~ 534 (562)
+++|.+++.+|..|..+++|++|++++|++++.+|.. ..+++|+++++++|+ +.|
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999999899999999999999999999999888876 788999999999998 554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.5e-29 Score=245.12 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=205.2
Q ss_pred CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 156 (562)
.++++++++++.++ .+|..+. ++|++|++++|.+. ...+..|.++++|++|++++|.++.+.+ ..+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~ 96 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT--------EIKDGDFKNLKNLHTLILINNKISKISP---GAF 96 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC--------CBCTTTTTTCTTCCEEECCSSCCCCBCT---TTT
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC--------EeChhhhccCCCCCEEECCCCcCCeeCH---HHh
Confidence 36888888888887 5666553 68888999988753 4445578888899999999888887754 567
Q ss_pred CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC--
Q 048635 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ-- 234 (562)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-- 234 (562)
..+++|++|++++|.+... |..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-~~~~--------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-PEKM--------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-CSSC--------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred cCCCCCCEEECCCCcCCcc-Chhh--------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 7888899999998887643 2111 1578899999998887777778888889999998887643
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCC
Q 048635 235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHE 313 (562)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~ 313 (562)
.....+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 333456667888888888888774 344332 778888888888887767778888888888888888776554 4566
Q ss_pred CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC------CCCCCEEEcccCCC
Q 048635 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN------CNMLQVLDFRNNHI 387 (562)
Q Consensus 314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l 387 (562)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+++..+..|.. .+.++.|++++|.+
T Consensus 239 l~~L~~L~L~~N~l~------------~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 239 TPHLRELHLNNNKLV------------KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp STTCCEEECCSSCCS------------SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCCEEECCCCcCc------------cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 777777777777665 55554 566677777777777777655555543 25666777777766
Q ss_pred CC--cchHHhhcCCCCCEEEccCcc
Q 048635 388 SD--NFPCWLRNASSLQVLVLRSNN 410 (562)
Q Consensus 388 ~~--~~~~~l~~l~~L~~L~l~~n~ 410 (562)
.. ..|..|..+++++.+++++|+
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccCccccccccceeEEEecccC
Confidence 43 345566666667777766663
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.7e-34 Score=292.84 Aligned_cols=392 Identities=19% Similarity=0.177 Sum_probs=214.8
Q ss_pred CCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCC-ccccccCCCCCCCEEecccCCCCCccchh
Q 048635 101 PRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGT-ERCKALSFLPNLQVLNLSSCLLLGPINHH 179 (562)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 179 (562)
++|++|++++|.+. .......+..+++|++|++++|.++.... .....+..+++|++|++++|.+.+..+..
T Consensus 3 ~~l~~L~Ls~~~l~-------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELS-------DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCCCC-------HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcccC-------chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 56788888888743 11122336778888888888888764321 11245667788888888888876654433
Q ss_pred cccccCCCCcccccCC-CCCCEEEccCCcCcc----cCChhhhCCCCccEEeccCCCCCCCCCCCC-----CCCCCCCEE
Q 048635 180 LANLRSHSQFFFVANL-LNLTNLDLSQCDLRG----KYPEKILQVSTLETLDLSYNPLLQGSLPNF-----PKNSYLQNL 249 (562)
Q Consensus 180 ~~~l~~~~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L 249 (562)
+... +... .+|++|++++|.++. .++..+..+++|++|++++|.+.......+ ...++|++|
T Consensus 76 l~~~--------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 76 VLQG--------LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp HHHT--------TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHH--------HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence 3211 1111 168888888888874 446677778888888888876533222211 124467777
Q ss_pred EccCCcCCCCC----CCCCcCCCCCcEEEccCCcccccCCccCC-----CCCCCCeeeCcCCccccc-----CCCCCCCC
Q 048635 250 NLANTSFSGIL----PDPIGILKYLTRVDLRSCSFTGPIPTSTT-----NLTQLFHVDFSSNHFSGP-----IPSFHESR 315 (562)
Q Consensus 250 ~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~-----~~~~~~~~ 315 (562)
++++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.+. ...+..++
T Consensus 148 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 77777766532 33445567777777777776643333222 245677777777766542 12234556
Q ss_pred CCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCcc
Q 048635 316 NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDNF 391 (562)
Q Consensus 316 ~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 391 (562)
+|++|++++|.++.. .+ ..+....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 228 ~L~~L~Ls~n~l~~~------~~-~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 228 SLRELALGSNKLGDV------GM-AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp TCCEEECCSSBCHHH------HH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred CccEEeccCCcCChH------HH-HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 666666666655410 00 011122233455666666666666543 3444555666666666666665433
Q ss_pred hHHhhc-----CCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccc
Q 048635 392 PCWLRN-----ASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQA 464 (562)
Q Consensus 392 ~~~l~~-----l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (562)
+..+.. .++|++|++++|.+++.. .++..+..+++|++|++++|++++..+..+
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l------------------- 361 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL------------------- 361 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH-------------------
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH-------------------
Confidence 333322 246666666666655321 012333445666666666665532211111
Q ss_pred cccccC-cCCCCEEeCcCCcCcc----CcChhccCCCCCCeeeCCCCcccccChhhhc-----CCCCCCeEeCcCCcce
Q 048635 465 TEEMGR-FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLA-----SLNFLSVLNLSYNNLV 533 (562)
Q Consensus 465 ~~~l~~-l~~L~~L~Ls~n~i~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~ 533 (562)
...+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 011111 3566666666666654 4555555666666666666666543221111 1234555555555444
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.1e-34 Score=293.61 Aligned_cols=398 Identities=19% Similarity=0.155 Sum_probs=222.6
Q ss_pred CCCCEEecCCccCcccCCcc-CCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc-ccc
Q 048635 77 TNLTYLNLSHCGFTGEIPTE-ISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE-RCK 154 (562)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~ 154 (562)
++|++|++++|+++...... +..+++|++|++++|.+... ....++..+..+++|++|++++|.+.+.... ...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 45677777777776443222 56677777777777764210 0012345566677777777777776543221 111
Q ss_pred ccCCCC-CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhC-----CCCccEEecc
Q 048635 155 ALSFLP-NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQ-----VSTLETLDLS 228 (562)
Q Consensus 155 ~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~L~ 228 (562)
.+.... +|++|++++|.+.+.....+ +..+..+++|++|++++|.+++..+..+.. .++|++|+++
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l--------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVL--------SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHH--------HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHH--------HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 122111 57777777777664332222 122455667777777777776444433322 3567777777
Q ss_pred CCCCCCCCCC----CCCCCCCCCEEEccCCcCCCCCCCCCc-----CCCCCcEEEccCCccccc----CCccCCCCCCCC
Q 048635 229 YNPLLQGSLP----NFPKNSYLQNLNLANTSFSGILPDPIG-----ILKYLTRVDLRSCSFTGP----IPTSTTNLTQLF 295 (562)
Q Consensus 229 ~~~~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~ 295 (562)
+|.+...... .+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 7765443321 223356777777777776543222222 245677777777777643 344555667777
Q ss_pred eeeCcCCcccccC-----CC-CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCc
Q 048635 296 HVDFSSNHFSGPI-----PS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK 369 (562)
Q Consensus 296 ~L~l~~n~~~~~~-----~~-~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 369 (562)
+|++++|.+.+.. +. +..+++|++|++++|.++.. . ...++.. +..+++|++|++++|.+++..+.
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~------~-~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK------G-CGDLCRV-LRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------H-HHHHHHH-HHHCTTCCEEECTTCCCHHHHHH
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH------H-HHHHHHH-HhhCCCcceEECCCCCCchHHHH
Confidence 7777777765421 11 23466777777777766510 0 0012332 44566777777777776543332
Q ss_pred cCC-----CCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceecC--CCCCCC-CCCCCCEEEcCCCcC
Q 048635 370 SLA-----NCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHIS--YPRNNV-SWPLLQIVDFASNKF 437 (562)
Q Consensus 370 ~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~-~~~~L~~L~l~~n~~ 437 (562)
.+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+... +...+. ..++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 222 235777777777777654 34556667777777777777664320 011111 156777777777776
Q ss_pred CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhcc-----CCCCCCeeeCCCCcccccC
Q 048635 438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKI 512 (562)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~~ 512 (562)
++.. ...++..+..+++|++|++++|.+++.....+. ....|+.|++.++.+....
T Consensus 383 ~~~~-------------------~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 383 SDSS-------------------CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp CHHH-------------------HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred Chhh-------------------HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 3210 013455566677777777777777643222221 2335666666666655433
Q ss_pred h
Q 048635 513 P 513 (562)
Q Consensus 513 p 513 (562)
+
T Consensus 444 ~ 444 (461)
T 1z7x_W 444 E 444 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.4e-29 Score=244.70 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=233.1
Q ss_pred CCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccC
Q 048635 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKY 212 (562)
Q Consensus 133 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 212 (562)
.+++.++++++.++.++.. + .++|++|++++|.+.+..+.. +.++++|++|++++|.+++..
T Consensus 33 c~l~~l~~~~~~l~~ip~~----~--~~~l~~L~l~~n~i~~~~~~~------------~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE----I--SPDTTLLDLQNNDISELRKDD------------FKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp EETTEEECCSSCCSSCCSC----C--CTTCCEEECCSSCCCEECTTT------------TTTCTTCCEEECCSSCCCEEC
T ss_pred ccCCEEECCCCCccccCCC----C--CCCCeEEECCCCcCCccCHhH------------hhCCCCCcEEECCCCccCccC
Confidence 3799999999999988752 2 368999999999998765444 456678999999999999888
Q ss_pred ChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccc--cCCccCCC
Q 048635 213 PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG--PIPTSTTN 290 (562)
Q Consensus 213 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~ 290 (562)
|..+..+++|++|++++|.+.......+ ++|++|++++|.++...+..+..+++|++|++++|.++. ..+..+..
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 9999999999999999998764332222 789999999999997777778999999999999999963 56777777
Q ss_pred CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635 291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370 (562)
Q Consensus 291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 370 (562)
+ +|++|++++|.+.+....+ .++|++|++++|.++ .++...+..+++|+.|++++|.+++..+.+
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ------------AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCC------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCC------------ccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 7 9999999999998754443 378999999999887 455445888999999999999999888888
Q ss_pred CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
+..+++|++|++++|+++. +|..+..+++|++|++++|.++... +..+....
T Consensus 237 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~------------------------- 288 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG--VNDFCPVG------------------------- 288 (332)
T ss_dssp GGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCC--TTSSSCSS-------------------------
T ss_pred hhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccC--hhHccccc-------------------------
Confidence 9999999999999999985 6777899999999999999988654 22222110
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc--cCcChhccCCCCCCeeeCCCCc
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNN 507 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~p~~l~~l~~L~~L~Ls~n~ 507 (562)
+ ....+.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 289 --------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 --------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --------------c--ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0 011345666777777665 4556667777777777777764
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.6e-31 Score=281.81 Aligned_cols=386 Identities=12% Similarity=0.035 Sum_probs=208.1
Q ss_pred CCCCCCEEecCCccCcccCCccCCC-CC-CCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISS-LP-RLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER 152 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 152 (562)
.+++|++|+|++|.+++..+..+.. ++ +|++|++++|... .....+....++++|++|++++|.+++.+..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF------TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE------EHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc------CHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 5677777777777766555554544 33 3777777776410 00111222346777777777777765544321
Q ss_pred c-cccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635 153 C-KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231 (562)
Q Consensus 153 ~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 231 (562)
. ..+..+++|++|++++|.+.+.....+.. .+.++++|++|++++|.+.+ ++..+..+++|+.|+++...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--------~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLET--------IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHH--------HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCC
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHH--------HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccc
Confidence 1 22346677777777777765433333321 24456677777777777763 55666777777777776432
Q ss_pred CC---CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCccccc
Q 048635 232 LL---QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNHFSGP 307 (562)
Q Consensus 232 ~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 307 (562)
.. ......+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred cccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence 11 11122344466777777766432 2345555666777777777776553322 2345667777777763221111
Q ss_pred CCCC-CCCCCCCEEEcCC-----------CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC-C
Q 048635 308 IPSF-HESRNLNYLDLSS-----------NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN-C 374 (562)
Q Consensus 308 ~~~~-~~~~~L~~L~l~~-----------n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l 374 (562)
.+.+ ..+++|++|++++ +.++ +.........+++|+.|+++.+.+++..+..+.. +
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS-----------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC-----------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccC-----------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 2222 4456677777762 2222 1111111334556667666666665544444433 6
Q ss_pred CCCCEEEcc----cCCCCCc-----chHHhhcCCCCCEEEccCcc--cceecCCCCCC-CCCCCCCEEEcCCCcCCCcCC
Q 048635 375 NMLQVLDFR----NNHISDN-----FPCWLRNASSLQVLVLRSNN--FSGHISYPRNN-VSWPLLQIVDFASNKFGGRLS 442 (562)
Q Consensus 375 ~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~ 442 (562)
++|++|+++ .|.+++. ++..+..+++|++|+++.|. +++.. ...+ ..+++|++|++++|++++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~-- 478 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG--LSYIGQYSPNVRWMLLGYVGESDE-- 478 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH--HHHHHHSCTTCCEEEECSCCSSHH--
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH--HHHHHHhCccceEeeccCCCCCHH--
Confidence 666677665 4455542 33335556667777665432 32211 1111 2356666666666665321
Q ss_pred hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCccccc
Q 048635 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
.++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 479 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 479 --------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp --------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred --------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 1122234556666677766666533 233334566666677766666643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=241.26 Aligned_cols=276 Identities=20% Similarity=0.220 Sum_probs=176.3
Q ss_pred EEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCc
Q 048635 200 NLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279 (562)
Q Consensus 200 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 279 (562)
..+.+++.++ .+|..+. ++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3455555555 3344332 356666666666544444455566666666666666666656667777777777777777
Q ss_pred ccccCCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCC-CcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635 280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNN-LNGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356 (562)
Q Consensus 280 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L 356 (562)
+++..+..+..+++|++|++++|.+.+... .+..+++|++|++++|. +. .++...+.++++|++|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT------------KIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------------EECTTTTTTCCEEEEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc------------ccCHHHccCCCCCCEE
Confidence 764444446677777777777777765443 45677777877777773 33 4444447788889999
Q ss_pred ECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCC---CCCCCCCCEEEcC
Q 048635 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRN---NVSWPLLQIVDFA 433 (562)
Q Consensus 357 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~~~L~~L~l~ 433 (562)
++++|.+++..|..+..+++|++|++++|++.......+..+++|++|++++|.+.+.. +.. ....+.++.++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--FSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC--CC------CCCCCCEEEEE
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc--ccccccccccchhhccccc
Confidence 99999988888888989999999999999987755555667889999999999887543 211 1234556666666
Q ss_pred CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChh-ccCCCCCCeeeCCCCcccccC
Q 048635 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKI 512 (562)
Q Consensus 434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~ 512 (562)
++.+.+.. ...+|+.+..+++|++|++++|.++ .+|.. |..+++|++|++++|++++..
T Consensus 258 ~~~l~~~~-------------------l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 258 NVKITDES-------------------LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SCBCCHHH-------------------HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccccCcc-------------------hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 66553211 0123444555666666666666666 33333 456666666666666666433
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-28 Score=241.54 Aligned_cols=250 Identities=24% Similarity=0.242 Sum_probs=153.4
Q ss_pred CCCCCC----CCCCCCCCcceeeeCC---------CCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCE
Q 048635 15 AKMSQW----SDSTNCCDWTGVDCDE---------AGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTY 81 (562)
Q Consensus 15 ~~~~~w----~~~~~~c~w~g~~c~~---------~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~ 81 (562)
+....| ....++|.|.|+.|.. ..+|+.|+++++ .+. .+ |..+.++++|++
T Consensus 45 ~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-~l~-~l--------------p~~l~~l~~L~~ 108 (328)
T 4fcg_A 45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLP-QF--------------PDQAFRLSHLQH 108 (328)
T ss_dssp THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-CCS-SC--------------CSCGGGGTTCSE
T ss_pred hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-Cch-hc--------------ChhhhhCCCCCE
Confidence 344567 3467889999998842 256777777777 444 22 445666777777
Q ss_pred EecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc------c
Q 048635 82 LNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK------A 155 (562)
Q Consensus 82 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~------~ 155 (562)
|++++|.++ .+|..++++++|++|++++|.+ . .+|..+.++++|++|++++|++....+.... .
T Consensus 109 L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l--------~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--------R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp EEEESSCCC-CCCSCGGGGTTCSEEEEESCCC--------C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred EECCCCCcc-chhHHHhccCCCCEEECCCCcc--------c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 777777777 6777777777777777777764 2 4466677777777777777654333221111 1
Q ss_pred cCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCC
Q 048635 156 LSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG 235 (562)
Q Consensus 156 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 235 (562)
+..+++|++|++++|.++ .+|.. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+...
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~------------l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPAS------------IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGG------------GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred hccCCCCCEEECcCCCcC-cchHh------------hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence 233666666666666655 22222 334455666666666666 3444566666666666666655444
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635 236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304 (562)
Q Consensus 236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 304 (562)
....+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++++.+++..+.+
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 444555566666666666666656666666666666666666666666666666666666666555443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=231.81 Aligned_cols=282 Identities=20% Similarity=0.208 Sum_probs=182.3
Q ss_pred cEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCccccc--CCccCCCCCCCCeeeCc
Q 048635 223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGP--IPTSTTNLTQLFHVDFS 300 (562)
Q Consensus 223 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~ 300 (562)
+.++++++.+..... .+ .+++++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 456666665433222 11 35678888888887755555567778888888888877632 24455567778888888
Q ss_pred CCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc-cccCCCCCcCEEECcCCcccccCCccCCCCCCCCE
Q 048635 301 SNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD-IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQV 379 (562)
Q Consensus 301 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 379 (562)
+|.+.+....+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLK------------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEE------------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred CCccccChhhcCCCCCCCEEECCCCccc------------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 8777765555666777777777777665 3332 33666777777777777777666677777777777
Q ss_pred EEcccCCCCC-cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhC
Q 048635 380 LDFRNNHISD-NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNK 458 (562)
Q Consensus 380 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~ 458 (562)
|++++|.+.+ ..|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~-------------------- 212 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFF-------------------- 212 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCS--------------------
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccC--------------------
Confidence 7777777765 45666777777777777777776654 566667777777777777763
Q ss_pred CCcccccccccCcCCCCEEeCcCCcCccCcChhccCCC-CCCeeeCCCCcccccCh--hhhcCCCCCCeEeCcCCcceec
Q 048635 459 RCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIP--AQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 459 ~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
+..+..+..+++|+.|++++|.+++..|..+..++ +|++|++++|++++..+ ....-+...+.+.+..+.+.+.
T Consensus 213 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 213 ---SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp ---BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred ---ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccC
Confidence 22233456667777777777777766666666663 77777777777764321 1122233445555666666666
Q ss_pred CCCCCCCCc
Q 048635 536 IPTAKHVLP 544 (562)
Q Consensus 536 ~p~~~~~~~ 544 (562)
.|+..+-.+
T Consensus 290 ~p~~~~g~~ 298 (306)
T 2z66_A 290 TPSDKQGMP 298 (306)
T ss_dssp ESGGGTTCB
T ss_pred CchhhCCce
Confidence 665544433
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=232.24 Aligned_cols=246 Identities=26% Similarity=0.310 Sum_probs=124.3
Q ss_pred EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc---CCCCCCCCCCCEEEcCC
Q 048635 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP---IPSFHESRNLNYLDLSS 324 (562)
Q Consensus 248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~ 324 (562)
.++.+++.++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+... ...+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 44555544442 23222 23455555555555533333345555555555555555432 12223445555555555
Q ss_pred CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 403 (562)
|.+. .+|.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 88 n~i~------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 88 NGVI------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSEE------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred Cccc------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 5544 23332 4445555555555555554333 34555555555555555555544555555555555
Q ss_pred EEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635 404 LVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482 (562)
Q Consensus 404 L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 482 (562)
|++++|.+.+ .. +..+..+++|++|++++|.+. +..+..+..+++|++|++++|
T Consensus 155 L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 155 LKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLE-----------------------QLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCccccccc--hhHHhhCcCCCEEECCCCCcC-----------------------CcCHHHhcCCCCCCEEECCCC
Confidence 5555555543 22 444555555555555555552 222334445555555555555
Q ss_pred cCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC-CCCeEeCcCCccee
Q 048635 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN-FLSVLNLSYNNLVG 534 (562)
Q Consensus 483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~ 534 (562)
.+++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++.+
T Consensus 210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55544444555555555555555555555555555553 55555555555553
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6e-31 Score=280.04 Aligned_cols=425 Identities=11% Similarity=0.047 Sum_probs=293.0
Q ss_pred cccCCCCCCCEEecCCccC---cccCCccCC------------CCCCCcEEeCCCCCCCCCCCccccCCCcccccC-CC-
Q 048635 71 FGLANLTNLTYLNLSHCGF---TGEIPTEIS------------SLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN-LK- 133 (562)
Q Consensus 71 ~~l~~l~~L~~L~Ls~n~i---~~~~~~~~~------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~-l~- 133 (562)
..+.++++|++|+++++.. .+.+|..++ .+++|++|++++|.+. ...+..+.. ++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--------~~~~~~l~~~~~~ 138 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--------DLDLDRLAKARAD 138 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--------HHHHHHHHHHHGG
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--------HHHHHHHHHhccc
Confidence 3466788999999988642 123443343 7899999999999742 333444544 34
Q ss_pred CCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCc----
Q 048635 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR---- 209 (562)
Q Consensus 134 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~---- 209 (562)
+|++|++++|.... ..........+++|++|++++|.+.+.....+.. ....+++|++|++++|.++
T Consensus 139 ~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~--------~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 139 DLETLKLDKCSGFT-TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE--------LAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp GCCEEEEESCEEEE-HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH--------HHHHCCCCCEEECTTCCCSSCCH
T ss_pred cCcEEECcCCCCcC-HHHHHHHHhhCCCCCEEECccccccCcchhHHHH--------HHhcCCCccEEEeeccCCCccCH
Confidence 49999999886211 1111122347899999999999886654332222 2456788999999999987
Q ss_pred ccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCC---CCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635 210 GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFS---GILPDPIGILKYLTRVDLRSCSFTGPIPT 286 (562)
Q Consensus 210 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 286 (562)
..++..+..+++|+.|++++|.+.. ....+..+++|++|+++..... ...+..+..+++|+.++++++... .++.
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~ 287 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI 287 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG
T ss_pred HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH
Confidence 3444555678999999999986533 2234555889999999864322 233456678889999999886433 5677
Q ss_pred cCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC----
Q 048635 287 STTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG---- 360 (562)
Q Consensus 287 ~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~---- 360 (562)
.+..+++|++|++++|.+.+... .+..+++|++|+++ +.+. +.........+++|++|++++
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~-----------~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG-----------DRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH-----------HHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC-----------HHHHHHHHHhCCCCCEEEeecCccc
Confidence 77889999999999998754322 24778999999998 3332 111222245677899999993
Q ss_pred -------CcccccC-CccCCCCCCCCEEEcccCCCCCcchHHhhc-CCCCCEEEcc----Ccccceec---CCCCCCCCC
Q 048635 361 -------NQLQGVV-PKSLANCNMLQVLDFRNNHISDNFPCWLRN-ASSLQVLVLR----SNNFSGHI---SYPRNNVSW 424 (562)
Q Consensus 361 -------n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~~---~~~~~~~~~ 424 (562)
+.+++.. +.....+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++.. .++..+..+
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 4555432 222345899999999999998877777765 9999999996 55565321 011224568
Q ss_pred CCCCEEEcCCCc--CCCcCChhhhhhhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccC-cChhccCCCCCCe
Q 048635 425 PLLQIVDFASNK--FGGRLSQKCSTTLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGS-IPSSFGNLKQIES 500 (562)
Q Consensus 425 ~~L~~L~l~~n~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~ 500 (562)
++|++|++++|. +++ ..+..+ ..+++|++|++++|++++. ++..+..+++|++
T Consensus 436 ~~L~~L~L~~~~~~l~~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTD-----------------------LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp TTCCEEEEECCGGGCCH-----------------------HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred CCCCEEEEecCCCCccH-----------------------HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 999999998654 422 222223 3478999999999999863 4555688999999
Q ss_pred eeCCCCccccc-ChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCccccch
Q 048635 501 LDLSMNNLSGK-IPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNFNLH 549 (562)
Q Consensus 501 L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~ 549 (562)
|++++|.+++. ++..+..+++|++|++++|+++..-.. ....++.+++.
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 99999998764 455567899999999999998755222 23344544443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.5e-27 Score=225.16 Aligned_cols=270 Identities=20% Similarity=0.168 Sum_probs=188.0
Q ss_pred CEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCC
Q 048635 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSN 325 (562)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n 325 (562)
+.++.+++.++. +|.. ..++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555555542 2322 2345666666666666555555666666666666666666543 24566666777777666
Q ss_pred C-CcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635 326 N-LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL 404 (562)
Q Consensus 326 ~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 404 (562)
. +. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 91 ~~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 91 AQLR------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp TTCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcc------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 5 43 4433347777788888888888887777788888888888888888888666678888888888
Q ss_pred EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635 405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL 484 (562)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i 484 (562)
++++|.+.+.. +..+..+++|++|++++|.+. +..+..+..+++|+.|++++|.+
T Consensus 159 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 159 FLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVA-----------------------HVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccC--HHHhcCccccCEEECCCCccc-----------------------ccCHhHccCcccccEeeCCCCcC
Confidence 88888888665 556778888888888888873 44466678888999999999999
Q ss_pred ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCccccchHHHHhhhhhcCCC
Q 048635 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS 562 (562)
Q Consensus 485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~l~~l~~~~~~ 562 (562)
++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|....-.. ..+++...+.||+
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~-----l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD-----LKRLAANDLQGCA 285 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB-----GGGSCGGGSCCC-
T ss_pred CcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC-----hhhcCHHHhccCC
Confidence 9766677889999999999999988543321 1123455666778888888887654433 2345566677774
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.4e-26 Score=235.61 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=165.4
Q ss_pred CEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCC
Q 048635 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSN 325 (562)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n 325 (562)
..++.++..++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 445555554442 33322 245666666666666555566666666666666666666544 23456666666666666
Q ss_pred CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCcchHHhhcCCCCCEE
Q 048635 326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDNFPCWLRNASSLQVL 404 (562)
Q Consensus 326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 404 (562)
.++ .++...|..+++|++|++++|.+++..+..+..+++|++|++++| .+....+..|..+++|++|
T Consensus 134 ~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 134 WLT------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CCS------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCC------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 655 455555666777777777777777666666777777777777774 3444334456777777777
Q ss_pred EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635 405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL 484 (562)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i 484 (562)
++++|.+.+. ..+..+++|++|++++|.+. +..+..+..+++|+.|++++|.+
T Consensus 202 ~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 202 NLGMCNIKDM----PNLTPLVGLEELEMSGNHFP-----------------------EIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECTTSCCSSC----CCCTTCTTCCEEECTTSCCS-----------------------EECGGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccc----ccccccccccEEECcCCcCc-----------------------ccCcccccCccCCCEEEeCCCcC
Confidence 7777777643 24567777888888888773 34455677778888888888888
Q ss_pred ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 534 (562)
++..|..|..+++|+.|+|++|++++..++.+..+++|++|++++|++..
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 87777778888888888888888887666777778888888888887654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=234.21 Aligned_cols=226 Identities=22% Similarity=0.200 Sum_probs=118.6
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF 347 (562)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~ 347 (562)
+++.|++++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.++ .++...|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~ 132 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT------------TIPNGAF 132 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS------------SCCTTTS
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC------------eeCHhHh
Confidence 3444444444444444444444444444444444444322 12344444555555544443 3333335
Q ss_pred CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.+... + .+..+++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~ 208 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---P-NLTPLIK 208 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---C-CCTTCSS
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---c-ccCCCcc
Confidence 555555555555555554444455555555555555532 3332233455555566666655555532 1 3445556
Q ss_pred CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506 (562)
Q Consensus 427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n 506 (562)
|++|++++|+++ +..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus 209 L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 209 LDELDLSGNHLS-----------------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCEEECCCCccC-----------------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 666666666552 233444555666666666666666555556666666666666666
Q ss_pred cccccChhhhcCCCCCCeEeCcCCcce
Q 048635 507 NLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 507 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
++++..++.+..+++|++|++++|++.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccChhHhccccCCCEEEcCCCCcc
Confidence 666555555566666666666666654
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.2e-27 Score=229.38 Aligned_cols=235 Identities=17% Similarity=0.161 Sum_probs=164.3
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL 322 (562)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 322 (562)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+...+..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356777888887777 55666777777888888877777 6677777777777777777777644334556666666666
Q ss_pred CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC
Q 048635 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402 (562)
Q Consensus 323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 402 (562)
++|.+. +.+|... . .. ..+..+..+++|++|++++|+++. +|..+..+++|+
T Consensus 158 ~~n~~~-----------~~~p~~~-~------~~---------~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~ 209 (328)
T 4fcg_A 158 RACPEL-----------TELPEPL-A------ST---------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK 209 (328)
T ss_dssp EEETTC-----------CCCCSCS-E------EE---------C-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCC
T ss_pred CCCCCc-----------cccChhH-h------hc---------cchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCC
Confidence 655432 2333321 0 00 011123347777777777777773 566677777777
Q ss_pred EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482 (562)
Q Consensus 403 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 482 (562)
+|++++|.+.+. +..+..+++|++|++++|++. +.+|..+..+++|+.|++++|
T Consensus 210 ~L~L~~N~l~~l---~~~l~~l~~L~~L~Ls~n~~~-----------------------~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 210 SLKIRNSPLSAL---GPAIHHLPKLEELDLRGCTAL-----------------------RNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp EEEEESSCCCCC---CGGGGGCTTCCEEECTTCTTC-----------------------CBCCCCTTCCCCCCEEECTTC
T ss_pred EEEccCCCCCcC---chhhccCCCCCEEECcCCcch-----------------------hhhHHHhcCCCCCCEEECCCC
Confidence 777777777642 445677777888888777763 455666777888888888888
Q ss_pred cCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
.+.+.+|..+..+++|++|+|++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888888888888888877654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-28 Score=239.11 Aligned_cols=251 Identities=19% Similarity=0.216 Sum_probs=199.5
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL 322 (562)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 322 (562)
+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 4566666776766666655667777788888888887775443 777788888888888877543 2378888888
Q ss_pred CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHh-hcCCCC
Q 048635 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWL-RNASSL 401 (562)
Q Consensus 323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L 401 (562)
++|.++ .++ ...+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|
T Consensus 107 ~~n~l~------------~~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 107 ANNNIS------------RVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp CSSCCS------------EEE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCCccC------------CcC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 888776 222 2235679999999999998878888899999999999999998777666 478999
Q ss_pred CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481 (562)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 481 (562)
++|++++|.+.+.. ....+++|++|++++|+++ .+++.+..+++|+.|++++
T Consensus 172 ~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 172 EHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp CEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTT
T ss_pred CEEECCCCcCcccc----cccccccCCEEECCCCcCC------------------------cchhhhcccCcccEEECcC
Confidence 99999999998764 2234899999999999983 3455578889999999999
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCccc-ccChhhhcCCCCCCeEeCcCC-cceecCCCCCCCC
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVLNLSYN-NLVGQIPTAKHVL 543 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~~ 543 (562)
|.++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.+++++| .+.+..|......
T Consensus 224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~ 286 (317)
T 3o53_A 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (317)
T ss_dssp SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence 9999 67888999999999999999999 788899999999999999955 5777776554433
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.9e-26 Score=217.95 Aligned_cols=249 Identities=21% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCc-ccccC-CCCCCCCCCCEEEc
Q 048635 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNH-FSGPI-PSFHESRNLNYLDL 322 (562)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~L~~L~l 322 (562)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +.... ..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444555555555555555554444445555555555555554 43331 23345555555555
Q ss_pred CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC
Q 048635 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402 (562)
Q Consensus 323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 402 (562)
++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 113 ~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 113 DRCGLQ------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCcCC------------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 555544 23333355666666666666666655555566667777777777776665555566677777
Q ss_pred EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482 (562)
Q Consensus 403 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 482 (562)
+|++++|.+.+.. +..+..+++|++|++++|++. +..+..+..+++|+.|++++|
T Consensus 181 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 181 RLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLS-----------------------ALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCS-----------------------CCCHHHHTTCTTCCEEECCSS
T ss_pred EEECCCCcccccC--HhHccCcccccEeeCCCCcCC-----------------------cCCHHHcccCcccCEEeccCC
Confidence 7777777766654 566666777777777777663 222334566777777777777
Q ss_pred cCccCcChhccCCCCCCeeeCCCCcccccChhhhcC--CCCCCeEeCcCCc
Q 048635 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS--LNFLSVLNLSYNN 531 (562)
Q Consensus 483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~l~~n~ 531 (562)
.+....+.. .....++.+..+.+.+....|+.+.+ +..++..++.+|+
T Consensus 236 ~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 776332211 11233445556667777667766644 4455655666653
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=225.33 Aligned_cols=281 Identities=20% Similarity=0.207 Sum_probs=158.7
Q ss_pred CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635 75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK 154 (562)
Q Consensus 75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 154 (562)
.|+.....+.++++++ .+|..+. ++|++|++++|.+. ...+..|.++++|++|++++|.++++++ .
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~ 94 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT--------YISNSDLQRCVNLQALVLTSNGINTIEE---D 94 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCEECT---T
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc--------ccCHHHhccCCCCCEEECCCCccCccCH---h
Confidence 3444455666666666 4454433 35666666666532 2222344555555555555555444332 2
Q ss_pred ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635 155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ 234 (562)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 234 (562)
.+..+++ |++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 95 ~~~~l~~------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 95 SFSSLGS------------------------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTTTCTT------------------------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred hcCCCCC------------------------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence 2333444 4555555555543333335555566666666555443
Q ss_pred CCC-CCCCCCCCCCEEEccCC-cCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCC
Q 048635 235 GSL-PNFPKNSYLQNLNLANT-SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312 (562)
Q Consensus 235 ~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 312 (562)
... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---- 214 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---- 214 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH----
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch----
Confidence 322 23445566666666665 344444555666666666776666666555666666666666666666553222
Q ss_pred CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC---CCCCCCCEEEcccCCCCC
Q 048635 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL---ANCNMLQVLDFRNNHISD 389 (562)
Q Consensus 313 ~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~ 389 (562)
...+..+++|+.|++++|.+++..+..+ .....++.++++++.+.+
T Consensus 215 -------------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 215 -------------------------------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp -------------------------------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred -------------------------------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 1112223334444444444443222221 235567788888887776
Q ss_pred ----cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635 390 ----NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS 442 (562)
Q Consensus 390 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 442 (562)
.+|..+..+++|++|++++|+++... ...+..+++|++|++++|++.+..|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 35677888999999999999988443 3335789999999999999977665
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-24 Score=228.57 Aligned_cols=269 Identities=24% Similarity=0.273 Sum_probs=187.0
Q ss_pred CCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCC
Q 048635 160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239 (562)
Q Consensus 160 ~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 239 (562)
.+++.|++++|.++. +|..+ .++|++|++++|.++ .+|. .+++|++|++++|.+.. ++.
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l--------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCL--------------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS--LPV 98 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCC--------------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC--CCC
T ss_pred CCCcEEEecCCCcCc-cChhh--------------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc--CCC
Confidence 368888888888763 33222 146888888888887 4444 46788888888887643 333
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY 319 (562)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 319 (562)
.+++|++|++++|.+++. |. .+++|+.|++++|.+++ +|.. +++|++|++++|.+.+... .+++|+.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~ 165 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCK 165 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred --CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCE
Confidence 567888888888887753 33 56778888888888874 4443 3778888888888775432 3467888
Q ss_pred EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635 320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS 399 (562)
Q Consensus 320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 399 (562)
|++++|.++ .+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.. |. .++
T Consensus 166 L~L~~N~l~------------~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~ 221 (622)
T 3g06_A 166 LWAYNNQLT------------SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPS 221 (622)
T ss_dssp EECCSSCCS------------CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCT
T ss_pred EECCCCCCC------------CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCC
Confidence 888887776 444 234568888888888774 333 246788888888887763 32 246
Q ss_pred CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM 479 (562)
Q Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 479 (562)
+|++|++++|.+++. + ..+++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 222 ~L~~L~Ls~N~L~~l---p---~~l~~L~~L~Ls~N~L~------------------------~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 222 GLKELIVSGNRLTSL---P---VLPSELKELMVSGNRLT------------------------SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TCCEEECCSSCCSCC---C---CCCTTCCEEECCSSCCS------------------------CCCC---CCTTCCEEEC
T ss_pred CCCEEEccCCccCcC---C---CCCCcCcEEECCCCCCC------------------------cCCc---ccccCcEEeC
Confidence 788888888877742 3 34577888888888773 2233 4567888888
Q ss_pred cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635 480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 520 (562)
Q Consensus 480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 520 (562)
++|.++ .+|..|.++++|+.|+|++|++++..|..+..++
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 888888 6677788888888888888888877777665544
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.7e-25 Score=222.88 Aligned_cols=245 Identities=20% Similarity=0.180 Sum_probs=125.5
Q ss_pred CEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh
Q 048635 136 RELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK 215 (562)
Q Consensus 136 ~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 215 (562)
+.++.++..++.+|.. + .++++.|++++|.+....+.. +.++++|++|++++|.++...+..
T Consensus 46 ~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~~~------------~~~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG----I--STNTRLLNLHENQIQIIKVNS------------FKHLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp CEEECCSCCCSSCCSC----C--CTTCSEEECCSCCCCEECTTT------------TSSCSSCCEEECCSSCCCEECGGG
T ss_pred CEEEeCCCCcCcCCCC----C--CCCCcEEEccCCcCCeeCHHH------------hhCCCCCCEEECCCCcCCccChhh
Confidence 3444555555554431 1 134555555555554443322 333445666666666665555555
Q ss_pred hhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCc-ccccCCccCCCCCCC
Q 048635 216 ILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS-FTGPIPTSTTNLTQL 294 (562)
Q Consensus 216 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L 294 (562)
|.++++|+.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 6666666666666665544433345555566666666666555544555566666666666532 322223345555556
Q ss_pred CeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCC
Q 048635 295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC 374 (562)
Q Consensus 295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 374 (562)
++|++++|.+.. .+.+..+++|++|++++|.++ .++...|.++++|+.|++++|.+++..+.+|..+
T Consensus 188 ~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 188 RYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CeecCCCCcCcc-ccccCCCcccCEEECCCCccC------------ccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 666665555542 233444455555555555443 2222224445555555555555554444555555
Q ss_pred CCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccc
Q 048635 375 NMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411 (562)
Q Consensus 375 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 411 (562)
++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5555555555555544444444455555555555544
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.4e-25 Score=232.75 Aligned_cols=291 Identities=23% Similarity=0.192 Sum_probs=199.4
Q ss_pred CCCCCCCCCCCCCCcceeeeCC-------CCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCc
Q 048635 15 AKMSQWSDSTNCCDWTGVDCDE-------AGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHC 87 (562)
Q Consensus 15 ~~~~~w~~~~~~c~w~g~~c~~-------~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n 87 (562)
+..+.|....+||.|.|..+.. ...++.|+++++ .+. .+ |..+. ++|++|++++|
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n-~L~-~l--------------p~~l~--~~L~~L~L~~N 71 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES-GLT-TL--------------PDCLP--AHITTLVIPDN 71 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS-CCS-CC--------------CSCCC--TTCSEEEECSC
T ss_pred HHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC-CcC-cc--------------ChhhC--CCCcEEEecCC
Confidence 3445676677889996643211 145888999988 555 32 33343 78999999999
Q ss_pred cCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEec
Q 048635 88 GFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNL 167 (562)
Q Consensus 88 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l 167 (562)
.++ .+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.++. .+++|+.|++
T Consensus 72 ~l~-~lp~---~l~~L~~L~Ls~N~l~---------~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L 128 (622)
T 3g06_A 72 NLT-SLPA---LPPELRTLEVSGNQLT---------SLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWI 128 (622)
T ss_dssp CCS-CCCC---CCTTCCEEEECSCCCS---------CCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEEC
T ss_pred CCC-CCCC---cCCCCCEEEcCCCcCC---------cCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEEC
Confidence 888 5665 5788999999998852 2333 67888999999988887653 5678888888
Q ss_pred ccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCC
Q 048635 168 SSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ 247 (562)
Q Consensus 168 ~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 247 (562)
++|.++.... .+++|++|++++|.+++ +|. .+++|+.|++++|.+... + ..+++|+
T Consensus 129 ~~N~l~~lp~----------------~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l--~--~~~~~L~ 184 (622)
T 3g06_A 129 FGNQLTSLPV----------------LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL--P--MLPSGLQ 184 (622)
T ss_dssp CSSCCSCCCC----------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC--C--CCCTTCC
T ss_pred CCCCCCcCCC----------------CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC--c--ccCCCCc
Confidence 8888765321 13578888888888874 333 246788888888876442 2 3457788
Q ss_pred EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCC
Q 048635 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNL 327 (562)
Q Consensus 248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l 327 (562)
.|++++|.+++ +|. ..++|+.|++++|.++ .+|.. +++|+.|++++|.+++.. ..+++|+.|++++|.+
T Consensus 185 ~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 185 ELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRL 253 (622)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCC
Confidence 88888888774 332 2467788888888777 33432 367788888888777533 3456777777777776
Q ss_pred cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcC
Q 048635 328 NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNA 398 (562)
Q Consensus 328 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 398 (562)
+ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+
T Consensus 254 ~------------~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 254 T------------SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp S------------CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred C------------cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5 4443 3456777777777777 556667777777777777777777666655543
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1e-24 Score=223.44 Aligned_cols=204 Identities=20% Similarity=0.156 Sum_probs=95.6
Q ss_pred CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274 (562)
Q Consensus 195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 274 (562)
+++|++|++++|.+++..+..|..+++|+.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 33455555555555544445555555555555555554433333344455555555555555544444455555555555
Q ss_pred ccCC-cccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCc
Q 048635 275 LRSC-SFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL 353 (562)
Q Consensus 275 l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L 353 (562)
+++| .+....+..+..+++|++|++++|.+.+. +.+..+++|++|++++|.++ .++...|.++++|
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L 244 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP------------EIRPGSFHGLSSL 244 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS------------EECGGGGTTCTTC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc------------ccCcccccCccCC
Confidence 5553 22222223344555555555555555432 33344444444444444443 2222224444444
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccc
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 411 (562)
+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 4444444444444444444444444444444444443333444444444444444443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-26 Score=234.00 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=195.1
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL 322 (562)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 322 (562)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4567777777777777667778888888888888888876554 7788888888888888876543 378899999
Q ss_pred CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh-cCCCC
Q 048635 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR-NASSL 401 (562)
Q Consensus 323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L 401 (562)
++|.++. ++ ...+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus 107 ~~N~l~~------------~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 107 ANNNISR------------VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp CSSCCCC------------EE---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred cCCcCCC------------CC---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 8888762 22 22346799999999999988888899999999999999999998887775 79999
Q ss_pred CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481 (562)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 481 (562)
++|++++|.+.+.. ....+++|++|++++|.++ .+|+.+..+++|+.|++++
T Consensus 172 ~~L~Ls~N~l~~~~----~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 172 EHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp CEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTT
T ss_pred cEEecCCCcccccc----ccccCCCCCEEECCCCCCC------------------------CCCHhHcCCCCccEEEecC
Confidence 99999999998764 2335899999999999984 2445578889999999999
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCccc-ccChhhhcCCCCCCeEeCc
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVLNLS 528 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~ 528 (562)
|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 224 N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999 47888999999999999999998 6788888899999999886
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7e-27 Score=227.78 Aligned_cols=249 Identities=18% Similarity=0.118 Sum_probs=202.9
Q ss_pred CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN 325 (562)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 325 (562)
++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 3444555555443333444567899999999999998777889999999999999999987655 889999999999999
Q ss_pred CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEE
Q 048635 326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV 405 (562)
Q Consensus 326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 405 (562)
.++ .++ ..++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|+
T Consensus 91 ~l~------------~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 91 YVQ------------ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp EEE------------EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred ccc------------ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 876 222 2368999999999998765543 67899999999999997777888999999999
Q ss_pred ccCcccceecCCCCCC-CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635 406 LRSNNFSGHISYPRNN-VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL 484 (562)
Q Consensus 406 l~~n~l~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i 484 (562)
+++|.+.+.. +..+ ..+++|++|++++|.+++. +....+++|++|++++|.+
T Consensus 151 Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~~~-------------------------~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 151 LKLNEIDTVN--FAELAASSDTLEHLNLQYNFIYDV-------------------------KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp CTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCCEE-------------------------ECCCCCTTCCEEECCSSCC
T ss_pred CCCCCCCccc--HHHHhhccCcCCEEECCCCcCccc-------------------------ccccccccCCEEECCCCcC
Confidence 9999998765 4544 4689999999999998422 2233589999999999999
Q ss_pred ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce-ecCCCCCCCCc
Q 048635 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GQIPTAKHVLP 544 (562)
Q Consensus 485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~~~ 544 (562)
++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. +.+|..+..++
T Consensus 204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 94 5566999999999999999999 57888999999999999999998 65565444443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.3e-27 Score=229.51 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=129.6
Q ss_pred CCCCCCeeeCcCCcccccCCC-C--CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCC-----CCcCEEECcCC
Q 048635 290 NLTQLFHVDFSSNHFSGPIPS-F--HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRN-----CGLHILDLSGN 361 (562)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~~-~--~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~L~~n 361 (562)
.+++|++|++++|.+.+..+. + ..+++|++|++++|.++ .+|.. +..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~-~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA------------TRDAW-LAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS------------SSSSH-HHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc------------chhHH-HHHHHHhhcCCCcEEEeeCC
Confidence 345555555555555543322 1 45555555555555554 22221 2222 56777777777
Q ss_pred cccccCCccCCCCCCCCEEEcccCCCCCc--chHHh--hcCCCCCEEEccCcccceecCCC-CCCCCCCCCCEEEcCCCc
Q 048635 362 QLQGVVPKSLANCNMLQVLDFRNNHISDN--FPCWL--RNASSLQVLVLRSNNFSGHISYP-RNNVSWPLLQIVDFASNK 436 (562)
Q Consensus 362 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n~ 436 (562)
++++..+..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+...++ ..+..+++|++|++++|+
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 77766666777777777777777776553 22233 66777777777777766322111 222355677777777777
Q ss_pred CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhh
Q 048635 437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 516 (562)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 516 (562)
+.+..| ...+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +
T Consensus 240 l~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~ 292 (312)
T 1wwl_A 240 LRDAAG----------------------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-P 292 (312)
T ss_dssp CCSSCC----------------------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-T
T ss_pred CCcccc----------------------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-H
Confidence 743221 123445678888888888888 6776665 7888888888888855 65 7
Q ss_pred cCCCCCCeEeCcCCccee
Q 048635 517 ASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 517 ~~l~~L~~L~l~~n~l~~ 534 (562)
..+++|++|++++|++++
T Consensus 293 ~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCEEEEEECTTCTTTC
T ss_pred hhCCCCCEEeccCCCCCC
Confidence 888888889998888875
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.6e-26 Score=223.16 Aligned_cols=255 Identities=22% Similarity=0.189 Sum_probs=163.4
Q ss_pred ccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCC--------CCCCCCEEEccCCcCCCCCCCC
Q 048635 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP--------KNSYLQNLNLANTSFSGILPDP 263 (562)
Q Consensus 192 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~ 263 (562)
.+..++|++|++++|.+ .+|..+... |+.|++++|.+.....+... .+++|++|++++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455677777777777 556555433 66666666654333222211 2455555566555555555544
Q ss_pred C--cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635 264 I--GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341 (562)
Q Consensus 264 ~--~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~ 341 (562)
+ ..+++|++|++++|.+++. |..+..++. ...++|++|++++|.+. .
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------~~~~~L~~L~L~~N~l~------------~ 163 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------WLKPGLKVLSIAQAHSL------------N 163 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------TCCTTCCEEEEESCSCC------------C
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------hhcCCCcEEEeeCCCCc------------c
Confidence 3 5555555555555555543 433333300 01245555555555554 3
Q ss_pred CCccccCCCCCcCEEECcCCccccc--CCccC--CCCCCCCEEEcccCCCCCc---chHHhhcCCCCCEEEccCccccee
Q 048635 342 LSDIIFPRNCGLHILDLSGNQLQGV--VPKSL--ANCNMLQVLDFRNNHISDN---FPCWLRNASSLQVLVLRSNNFSGH 414 (562)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~ 414 (562)
++...+..+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ....+..+++|++|++++|.+.+.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 3333366677777777777776543 22333 7788899999999988842 223456789999999999998865
Q ss_pred cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC
Q 048635 415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN 494 (562)
Q Consensus 415 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~ 494 (562)
.+ ...+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..
T Consensus 244 ~~-~~~~~~l~~L~~L~Ls~N~l~------------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~ 294 (312)
T 1wwl_A 244 AG-APSCDWPSQLNSLNLSFTGLK------------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDE 294 (312)
T ss_dssp CC-CSCCCCCTTCCEEECTTSCCS------------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTT
T ss_pred cc-hhhhhhcCCCCEEECCCCccC------------------------hhhhhcc--CCceEEECCCCCCCCC-hh-Hhh
Confidence 41 134556789999999999984 3444444 7899999999999965 66 889
Q ss_pred CCCCCeeeCCCCcccc
Q 048635 495 LKQIESLDLSMNNLSG 510 (562)
Q Consensus 495 l~~L~~L~Ls~n~l~~ 510 (562)
+++|++|++++|++++
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 9999999999999985
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=199.93 Aligned_cols=217 Identities=21% Similarity=0.232 Sum_probs=151.4
Q ss_pred CCCCCcceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCC
Q 048635 24 TNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRL 103 (562)
Q Consensus 24 ~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 103 (562)
.++|.|.|..|.....++.++++++ .++.. |..+. ++|++|++++|++++..+..|.++++|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~-~l~~i---------------p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSK-KLTAI---------------PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTS-CCSSC---------------CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCC-CCCcc---------------CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 4789999999987677888999988 55532 22332 579999999999997777789999999
Q ss_pred cEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccc
Q 048635 104 VTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL 183 (562)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 183 (562)
++|++++|.+. ...+..|.++++|++|++++|.++.++. ..+..+++|++|++++|.+.+..+..
T Consensus 64 ~~L~l~~n~l~--------~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~---- 128 (270)
T 2o6q_A 64 RLLYLNDNKLQ--------TLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQLVNLAELRLDRNQLKSLPPRV---- 128 (270)
T ss_dssp CEEECCSSCCS--------CCCTTTTSSCTTCCEEECCSSCCCCCCT---TTTTTCSSCCEEECCSSCCCCCCTTT----
T ss_pred CEEECCCCccC--------eeChhhhcCCCCCCEEECCCCcCCcCCH---hHcccccCCCEEECCCCccCeeCHHH----
Confidence 99999999852 4445567888899999999888887765 45667778888888888776654332
Q ss_pred cCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCC
Q 048635 184 RSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDP 263 (562)
Q Consensus 184 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 263 (562)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..+..
T Consensus 129 --------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 129 --------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp --------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 344556777777777776555555666666777777666654444444555666666666666665544444
Q ss_pred CcCCCCCcEEEccCCccc
Q 048635 264 IGILKYLTRVDLRSCSFT 281 (562)
Q Consensus 264 ~~~~~~L~~L~l~~n~l~ 281 (562)
+..+++|+.|++++|.+.
T Consensus 201 ~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hccccCCCEEEecCCCee
Confidence 555566666666665554
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=200.21 Aligned_cols=203 Identities=25% Similarity=0.282 Sum_probs=105.6
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF 347 (562)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~ 347 (562)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+ .+..+++|++|++++|.++ .++...|
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------TLPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------CCCTTTT
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------eeChhhh
Confidence 3556666666666 3443332 456666666666654433 3455555555555555544 3444434
Q ss_pred CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCC
Q 048635 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427 (562)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 427 (562)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+.. +..
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~------- 152 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP--KGV------- 152 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTT-------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC--HhH-------
Confidence 45555555555555555444444455555555555555555544444444555555555555444322 222
Q ss_pred CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 507 (562)
Q Consensus 428 ~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~ 507 (562)
+..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 153 ----------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 153 ----------------------------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ----------------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------------------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 4445555555555555554444445555555555555555
Q ss_pred ccccChhhhcCCCCCCeEeCcCCcceec
Q 048635 508 LSGKIPAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 508 l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
+++..+..+..+++|++|++++|++.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 5544444455555555555555555433
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.6e-28 Score=257.27 Aligned_cols=411 Identities=15% Similarity=0.075 Sum_probs=219.1
Q ss_pred CCCCCCCEEecCCccCcccCCccCC-CCCCCcEEeCCCCCCCCCCCccccC-CCcccccCCCCCCEEEccCccCCCCCCc
Q 048635 74 ANLTNLTYLNLSHCGFTGEIPTEIS-SLPRLVTLDLSSREPISGFSWRLGI-PNFNFFQNLKELRELYLDNVDLSGLGTE 151 (562)
Q Consensus 74 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 151 (562)
..+++|++|++++|.+++..+..+. .+++|++|++++|.. +.. ..+..+.++++|++|++++|.+++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-------~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-------FSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-------EEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-------CCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 3567778888887777665555554 577788888877731 111 1233344677788888887776665443
Q ss_pred ccccc-CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCC
Q 048635 152 RCKAL-SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN 230 (562)
Q Consensus 152 ~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 230 (562)
+...+ ..+++|++|++++|. .......+..+ ...+++|++|++++|...+.++..+..+++|+.|++..+
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l--------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLA-SEVSFSALERL--------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH--------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH--------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 33333 366778888887775 11111222211 234567888888777333335666667777777776655
Q ss_pred CCCC------CCCCCCCCCCCCCEE-EccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC-CccCCCCCCCCeeeCcCC
Q 048635 231 PLLQ------GSLPNFPKNSYLQNL-NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI-PTSTTNLTQLFHVDFSSN 302 (562)
Q Consensus 231 ~~~~------~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n 302 (562)
.... .....+..+++|+.| .+.+... ..++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3100 000123345666666 3322211 122333345677777777777765332 222456677777777776
Q ss_pred cccc-cCCCC-CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC-CCCCCCE
Q 048635 303 HFSG-PIPSF-HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA-NCNMLQV 379 (562)
Q Consensus 303 ~~~~-~~~~~-~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~ 379 (562)
+.. ..+.+ ..+++|++|++.++.-.. ....+.+++........++++|+.|.+..+.+++..+..+. .+++|+.
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g--~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFV--MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTC--SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccc--cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 321 11111 346677777774321000 00011111111111122356677776666666654443333 4667777
Q ss_pred EEcc--c----CCCCCc-----chHHhhcCCCCCEEEccCcccceecCCCCCCCC-CCCCCEEEcCCCcCCCcCChhhhh
Q 048635 380 LDFR--N----NHISDN-----FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS-WPLLQIVDFASNKFGGRLSQKCST 447 (562)
Q Consensus 380 L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~ 447 (562)
|+++ + +.+++. ++..+..+++|++|++++ .+++.. ...+.. +++|++|++++|.+++.
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~--~~~l~~~~~~L~~L~L~~~~i~~~------- 471 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV--FEYIGTYAKKMEMLSVAFAGDSDL------- 471 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH--HHHHHHHCTTCCEEEEESCCSSHH-------
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH--HHHHHHhchhccEeeccCCCCcHH-------
Confidence 7777 3 344421 222355667777777765 443221 222222 56677777777766322
Q ss_pred hhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccCcCh-hccCCCCCCeeeCCCCcccccChhhh-cCCCCCCe
Q 048635 448 TLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQL-ASLNFLSV 524 (562)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~ 524 (562)
.+..+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|+++......+ ..+++|+.
T Consensus 472 ----------------~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 472 ----------------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp ----------------HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred ----------------HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 11122 4467777777777777544333 33456777777777777754333333 44566655
Q ss_pred EeCcCC
Q 048635 525 LNLSYN 530 (562)
Q Consensus 525 L~l~~n 530 (562)
..+..+
T Consensus 536 ~~~~~~ 541 (594)
T 2p1m_B 536 EVIDER 541 (594)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 555544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-25 Score=229.39 Aligned_cols=230 Identities=19% Similarity=0.117 Sum_probs=195.2
Q ss_pred cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD 344 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~ 344 (562)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~------------~l~- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ------------ELL- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE------------EEE-
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC------------CCC-
Confidence 345689999999999998878899999999999999999987665 889999999999999886 222
Q ss_pred cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC-C
Q 048635 345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV-S 423 (562)
Q Consensus 345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~ 423 (562)
..++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.. +..+. .
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~ 167 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAAS 167 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGG
T ss_pred ----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhh
Confidence 226899999999999976654 4688999999999999988888999999999999999999866 56654 7
Q ss_pred CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635 424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 503 (562)
Q Consensus 424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 503 (562)
+++|++|++++|.+++. +.+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus 168 l~~L~~L~Ls~N~l~~~-------------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-------------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp TTTCCEEECTTSCCCEE-------------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCcccEEecCCCccccc-------------------------cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 89999999999998432 223458999999999999995 5556999999999999
Q ss_pred CCCcccccChhhhcCCCCCCeEeCcCCcce-ecCCCCCCCCc
Q 048635 504 SMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GQIPTAKHVLP 544 (562)
Q Consensus 504 s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~~~ 544 (562)
++|++++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 9999995 7888999999999999999998 55554444443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.2e-23 Score=200.91 Aligned_cols=210 Identities=18% Similarity=0.161 Sum_probs=115.0
Q ss_pred CCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc
Q 048635 268 KYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII 346 (562)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~ 346 (562)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------------- 86 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--------------------- 86 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC---------------------
Confidence 346666666666665444455556666666666665554333 2344445555555544
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .++..+..+++
T Consensus 87 ---------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~ 150 (276)
T 2z62_A 87 ---------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTN 150 (276)
T ss_dssp ---------------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTT
T ss_pred ---------------ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCC
Confidence 44444444444445555555555544443333344455555555555544421 11334444555
Q ss_pred CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCC----EEeCcCCcCccCcChhccCCCCCCeee
Q 048635 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY----ALNMSHNALTGSIPSSFGNLKQIESLD 502 (562)
Q Consensus 427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~----~L~Ls~n~i~~~~p~~l~~l~~L~~L~ 502 (562)
|++|++++|++++. .+..+..+++|+ +|++++|.+++..+..+ ...+|++|+
T Consensus 151 L~~L~Ls~N~l~~~-----------------------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~ 206 (276)
T 2z62_A 151 LEHLDLSSNKIQSI-----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELA 206 (276)
T ss_dssp CCEEECCSSCCCEE-----------------------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEE
T ss_pred CCEEECCCCCCCcC-----------------------CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEE
Confidence 55555555554221 122233333444 77788888775444444 344788888
Q ss_pred CCCCcccccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635 503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 503 Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 538 (562)
+++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 888888766566667778888888888888766553
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=4e-28 Score=258.38 Aligned_cols=406 Identities=14% Similarity=0.117 Sum_probs=267.8
Q ss_pred ccCCCCCCCEEecCCccCccc---CCcc------------CCCCCCCcEEeCCCCCCCCCCCccccCCCccccc-CCCCC
Q 048635 72 GLANLTNLTYLNLSHCGFTGE---IPTE------------ISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ-NLKEL 135 (562)
Q Consensus 72 ~l~~l~~L~~L~Ls~n~i~~~---~~~~------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L 135 (562)
.+.++++|++|+++++..... .|.. ...+++|++|++++|.+. ...+..+. .+++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--------~~~~~~l~~~~~~L 132 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--------DDCLELIAKSFKNF 132 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--------HHHHHHHHHHCTTC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--------HHHHHHHHHhCCCC
Confidence 467889999999999853211 2211 236789999999998742 33334443 68999
Q ss_pred CEEEccCc-cCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCc--Ccc-c
Q 048635 136 RELYLDNV-DLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCD--LRG-K 211 (562)
Q Consensus 136 ~~L~l~~~-~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~--~~~-~ 211 (562)
++|++++| .++.... ...+..+++|++|++++|.+++..+..+..+ ...+++|++|++++|. +.. .
T Consensus 133 ~~L~L~~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 133 KVLVLSSCEGFSTDGL--AAIAATCRNLKELDLRESDVDDVSGHWLSHF--------PDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp CEEEEESCEEEEHHHH--HHHHHHCTTCCEEECTTCEEECCCGGGGGGS--------CTTCCCCCEEECTTCCSCCCHHH
T ss_pred cEEeCCCcCCCCHHHH--HHHHHhCCCCCEEeCcCCccCCcchHHHHHH--------hhcCCcCcEEEecccCCcCCHHH
Confidence 99999988 4443111 1233478999999999998877665555432 3467889999999986 321 1
Q ss_pred CChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcC-------CCCCCCCCcCCCCCcEE-EccCCccccc
Q 048635 212 YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF-------SGILPDPIGILKYLTRV-DLRSCSFTGP 283 (562)
Q Consensus 212 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~L~~L-~l~~n~l~~~ 283 (562)
+...+..+++|++|++++|.........+..+++|++|+++.+.. .+ ++..+..+++|+.+ .+.+... +.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence 222234579999999998832222111233478899998765532 21 22356778888888 4443322 23
Q ss_pred CCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC-
Q 048635 284 IPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG- 360 (562)
Q Consensus 284 ~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~- 360 (562)
++..+..+++|++|++++|.+.+... .+..+++|++|++++| +. +.........+++|++|++.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----------~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----------DAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----------HHHHHHHHHHCTTCCEEEEECS
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----------HHHHHHHHHhCCCCCEEEEecC
Confidence 44445567899999999998654221 1357889999999877 32 011111133567899998843
Q ss_pred --------CcccccCCccCC-CCCCCCEEEcccCCCCCcchHHhh-cCCCCCEEEcc--C----cccceec---CCCCCC
Q 048635 361 --------NQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFPCWLR-NASSLQVLVLR--S----NNFSGHI---SYPRNN 421 (562)
Q Consensus 361 --------n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~---~~~~~~ 421 (562)
+.+++.....+. .+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.++... .++..+
T Consensus 349 ~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp CTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 344433222222 478899999888888876665554 58999999998 3 4444210 001124
Q ss_pred CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC-cCCCCEEeCcCCcCccCcChhc-cCCCCCC
Q 048635 422 VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR-FKSLYALNMSHNALTGSIPSSF-GNLKQIE 499 (562)
Q Consensus 422 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~ 499 (562)
..+++|+.|++++ .++ +..+..+.. +++|+.|++++|.+++..+..+ ..+++|+
T Consensus 429 ~~~~~L~~L~L~~-~l~-----------------------~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLT-----------------------DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp HHCTTCCEEECCS-SCC-----------------------HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred hhCCCccEEeecC-ccc-----------------------HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence 5678999999977 442 222333443 7899999999999986665555 6799999
Q ss_pred eeeCCCCcccccChh-hhcCCCCCCeEeCcCCcce
Q 048635 500 SLDLSMNNLSGKIPA-QLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 500 ~L~Ls~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~ 533 (562)
+|+|++|++++..+. .+..+++|++|++++|+++
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 999999999765444 4456899999999999885
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.8e-23 Score=194.80 Aligned_cols=206 Identities=19% Similarity=0.179 Sum_probs=146.8
Q ss_pred CCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEc
Q 048635 244 SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDL 322 (562)
Q Consensus 244 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l 322 (562)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999998877789999999999999999997777789999999999999999987654 4577788888888
Q ss_pred CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc-CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401 (562)
Q Consensus 323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 401 (562)
++|.+. .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|
T Consensus 108 ~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLA------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCC------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCcc------------ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 877765 34443366667777777777777653 46667777777777777777766555555554444
Q ss_pred C----EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635 402 Q----VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477 (562)
Q Consensus 402 ~----~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L 477 (562)
+ +|++++|.+.+.. .......+|++|
T Consensus 176 ~~l~l~L~ls~n~l~~~~--------------------------------------------------~~~~~~~~L~~L 205 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQ--------------------------------------------------PGAFKEIRLKEL 205 (276)
T ss_dssp TTCCEEEECCSSCCCEEC--------------------------------------------------TTSSCSCCEEEE
T ss_pred cccceeeecCCCcccccC--------------------------------------------------ccccCCCcccEE
Confidence 4 5556655554332 111222356666
Q ss_pred eCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
++++|.+++..+..|..+++|+.|++++|+++..
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 6666666655445566677777777777776643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.5e-23 Score=196.87 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=121.5
Q ss_pred CCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCc
Q 048635 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK 369 (562)
Q Consensus 290 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 369 (562)
.+++|+.|++++|.+. ..+.+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+.
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~------------~~~--~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLH------------DIS--ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCC------------CCG--GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred cccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCC------------Cch--hhcCCCCCCEEECCCCccCccChh
Confidence 3444444444444443 2223444555555555555443 111 145555566666666666655555
Q ss_pred cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh
Q 048635 370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL 449 (562)
Q Consensus 370 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 449 (562)
.+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|+++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~----------- 170 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQ----------- 170 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-----------
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcC-----------
Confidence 5566666666666666666655555666666666666666665443 344556666666666666652
Q ss_pred hhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcC
Q 048635 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529 (562)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 529 (562)
+..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+. +++|+.++++.
T Consensus 171 ------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~ 231 (272)
T 3rfs_A 171 ------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 231 (272)
T ss_dssp ------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred ------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence 22233355667777777777777766666667777777777777766632 44677777777
Q ss_pred CcceecCCCCCCCCc
Q 048635 530 NNLVGQIPTAKHVLP 544 (562)
Q Consensus 530 n~l~~~~p~~~~~~~ 544 (562)
|.++|.+|.....+.
T Consensus 232 n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHTGGGBBCTTSCBC
T ss_pred HhCCCcccCcccccC
Confidence 777777776655443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.4e-22 Score=192.52 Aligned_cols=202 Identities=23% Similarity=0.194 Sum_probs=133.6
Q ss_pred CcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccC
Q 048635 264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342 (562)
Q Consensus 264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~ 342 (562)
+..++++++++++++.++ .+|..+. ++++.|++++|.+.+..+ .+..+++|++|++++|.++ .+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------------KL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC------------EE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC------------cc
Confidence 456777888888888877 4454443 577888888888776543 4567777777777777766 22
Q ss_pred CccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC
Q 048635 343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422 (562)
Q Consensus 343 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (562)
+. ...+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.... +..+.
T Consensus 71 ~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~ 145 (290)
T 1p9a_G 71 QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--PGLLT 145 (290)
T ss_dssp EC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--TTTTT
T ss_pred cC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC--hhhcc
Confidence 22 245566777777777776 45666677777777777777777766666777777777777777776544 44556
Q ss_pred CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeee
Q 048635 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 502 (562)
Q Consensus 423 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~ 502 (562)
.+++|+.|++++|+++ +..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 146 ~l~~L~~L~L~~N~l~-----------------------~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLT-----------------------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201 (290)
T ss_dssp TCTTCCEEECTTSCCS-----------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred cccCCCEEECCCCcCC-----------------------ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence 6667777777777662 112223455666777777777766 5555666666677777
Q ss_pred CCCCccc
Q 048635 503 LSMNNLS 509 (562)
Q Consensus 503 Ls~n~l~ 509 (562)
|++|.+.
T Consensus 202 L~~Np~~ 208 (290)
T 1p9a_G 202 LHGNPWL 208 (290)
T ss_dssp CCSCCBC
T ss_pred eCCCCcc
Confidence 7766665
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.5e-22 Score=192.43 Aligned_cols=210 Identities=17% Similarity=0.157 Sum_probs=123.0
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEE
Q 048635 242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLD 321 (562)
Q Consensus 242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 321 (562)
.+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~--------------- 99 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS--------------- 99 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC---------------
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc---------------
Confidence 355566666666655422 2345555555555555555431 234444455555555544443
Q ss_pred cCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635 322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401 (562)
Q Consensus 322 l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 401 (562)
++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 100 --------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 100 --------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp --------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 333334555556666666666665555556666666666666666666555555666666
Q ss_pred CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481 (562)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 481 (562)
++|++++|.+.+.. +..+..+++|++|++++|++. +..+..+..+++|+.|++++
T Consensus 160 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 160 TELDLSYNQLQSLP--EGVFDKLTQLKDLRLYQNQLK-----------------------SVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCS-----------------------CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCcCccC--HHHhcCCccCCEEECCCCcCC-----------------------ccCHHHHhCCcCCCEEEccC
Confidence 66666666666443 444556666666666666663 22334456677777777777
Q ss_pred CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCC
Q 048635 482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 522 (562)
Q Consensus 482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 522 (562)
|.+.+ .++.|+.|+++.|+++|.+|..++.+...
T Consensus 215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 215 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp SCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 77663 34567777777888887777776665543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=187.15 Aligned_cols=202 Identities=20% Similarity=0.190 Sum_probs=117.7
Q ss_pred hhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCC
Q 048635 216 ILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLF 295 (562)
Q Consensus 216 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 295 (562)
+.++++++.++++++.+..... .+ .+.++.|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3455666777776665533221 11 2456666666666665555566666666666666666654322 25566666
Q ss_pred eeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635 296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN 375 (562)
Q Consensus 296 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 375 (562)
+|++++|.+......+..+++|++|++++|.++ .++...|.++++|+.|++++|++++..+..+..++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~------------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCc------------ccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 666666666644444555666666666666554 44444455666666666666666655555555666
Q ss_pred CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
+|+.|++++|+++...+..|..+++|++|++++|.+. .++..+...++|+.+++++|++
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCCc
Confidence 6666666666666544445555666666666666665 2244555555666666666655
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-21 Score=182.02 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=83.6
Q ss_pred CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635 293 QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372 (562)
Q Consensus 293 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 372 (562)
..++++++++.+...+..+. +.++.|++++|.+. .++...+.++++|++|++++|.+++..+..+.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA------------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC------------ccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 34555565555554333221 34555555555443 23332344455555555555555544444455
Q ss_pred CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR 452 (562)
Q Consensus 373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 452 (562)
.+++|++|++++|++++..+..|..+++|++|++++|.+.+.. +..+..+++|++|++++|++.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-------------- 144 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP--SGVFDRLTKLKELRLNTNQLQ-------------- 144 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC--------------
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC--hhHhccCCcccEEECcCCcCC--------------
Confidence 5555555555555555444444445555555555555554332 233344444555555444442
Q ss_pred hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 145 ---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 ---------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ---------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 111223444444444444444444433344444444444444444444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.9e-24 Score=213.89 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=174.9
Q ss_pred CCCCCcCCCCCcEEEccCCcccccC----CccCCCCCCCCeeeCcCCccc---ccCC--------CCCCCCCCCEEEcCC
Q 048635 260 LPDPIGILKYLTRVDLRSCSFTGPI----PTSTTNLTQLFHVDFSSNHFS---GPIP--------SFHESRNLNYLDLSS 324 (562)
Q Consensus 260 ~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~---~~~~--------~~~~~~~L~~L~l~~ 324 (562)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+. +..| .+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3445556677777777777776542 233566777777777775433 2211 124677888888888
Q ss_pred CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC----CCC---------CCCCEEEcccCCCCC-c
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL----ANC---------NMLQVLDFRNNHISD-N 390 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~~-~ 390 (562)
|.++.. . ...++.. +..+++|++|++++|.+++..+..+ ..+ ++|++|++++|++++ .
T Consensus 104 n~l~~~------~-~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 104 NAFGPT------A-QEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCCCTT------T-HHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred CcCCHH------H-HHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 876510 0 0013333 5667788899999888865433333 333 889999999999973 3
Q ss_pred ch---HHhhcCCCCCEEEccCccccee--cCC-CCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccc
Q 048635 391 FP---CWLRNASSLQVLVLRSNNFSGH--ISY-PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQA 464 (562)
Q Consensus 391 ~~---~~l~~l~~L~~L~l~~n~l~~~--~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (562)
.+ ..+..+++|++|++++|.+... ..+ +..+..+++|++|++++|.++... ...+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l 236 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSAL 236 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHH
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHH
Confidence 34 4577889999999999988721 111 337778899999999999874211 1334
Q ss_pred cccccCcCCCCEEeCcCCcCccC----cChhcc--CCCCCCeeeCCCCcccc----cChhhh-cCCCCCCeEeCcCCcce
Q 048635 465 TEEMGRFKSLYALNMSHNALTGS----IPSSFG--NLKQIESLDLSMNNLSG----KIPAQL-ASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 465 ~~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~ 533 (562)
+..+..+++|+.|+|++|.+++. +|..+. .+++|++|+|++|++++ .+|..+ .++++|++|++++|+++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 56678889999999999999865 466664 38999999999999997 477777 66899999999999998
Q ss_pred ecCC
Q 048635 534 GQIP 537 (562)
Q Consensus 534 ~~~p 537 (562)
+..|
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 6553
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=208.71 Aligned_cols=257 Identities=17% Similarity=0.171 Sum_probs=131.1
Q ss_pred EEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCC----ccCCCCC-CCCeeeCcCCcccccCC-CCCC-----CCCC
Q 048635 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP----TSTTNLT-QLFHVDFSSNHFSGPIP-SFHE-----SRNL 317 (562)
Q Consensus 249 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~-~~~~-----~~~L 317 (562)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+ .+.. .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444555554444444444445555555555554333 3444455 55566665555554322 1111 1556
Q ss_pred CEEEcCCCCCcceEECCCCcCcccCCcc---ccCCC-CCcCEEECcCCcccccCCcc----CCC-CCCCCEEEcccCCCC
Q 048635 318 NYLDLSSNNLNGVLNLGRNNLNGTLSDI---IFPRN-CGLHILDLSGNQLQGVVPKS----LAN-CNMLQVLDFRNNHIS 388 (562)
Q Consensus 318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~----l~~-l~~L~~L~L~~n~l~ 388 (562)
++|++++|.++. ..+.. .+..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.++
T Consensus 83 ~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 83 TSLNLSGNFLSY-----------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CEEECCSSCGGG-----------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cEEECcCCcCCh-----------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 666666655541 11110 12222 45666666666665544332 222 246666666666666
Q ss_pred Ccc----hHHhhcCC-CCCEEEccCcccceecC--CCCCCCCC-CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCC
Q 048635 389 DNF----PCWLRNAS-SLQVLVLRSNNFSGHIS--YPRNNVSW-PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC 460 (562)
Q Consensus 389 ~~~----~~~l~~l~-~L~~L~l~~n~l~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (562)
+.. +..+..++ +|++|++++|.+.+... +...+..+ ++|++|++++|.+++...
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------------------ 213 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------------------ 213 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH------------------
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH------------------
Confidence 432 23334444 66666666666653220 00122233 366777777776643221
Q ss_pred cccccccccC-cCCCCEEeCcCCcCccCcC----hhccCCCCCCeeeCCCCcccccC-------hhhhcCCCCCCeEeCc
Q 048635 461 RDQATEEMGR-FKSLYALNMSHNALTGSIP----SSFGNLKQIESLDLSMNNLSGKI-------PAQLASLNFLSVLNLS 528 (562)
Q Consensus 461 ~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~-------p~~l~~l~~L~~L~l~ 528 (562)
..++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|++.+.. +..+..+++|++||++
T Consensus 214 -~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 214 -AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp -HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred -HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 112333433 2467777777777765433 23455677777777777744332 2345566667777777
Q ss_pred CCcceec
Q 048635 529 YNNLVGQ 535 (562)
Q Consensus 529 ~n~l~~~ 535 (562)
+|++...
T Consensus 293 ~N~l~~~ 299 (362)
T 3goz_A 293 GKEIHPS 299 (362)
T ss_dssp SCBCCGG
T ss_pred CCcCCCc
Confidence 7776544
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.2e-21 Score=185.16 Aligned_cols=195 Identities=21% Similarity=0.289 Sum_probs=130.0
Q ss_pred CcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCC
Q 048635 264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLS 343 (562)
Q Consensus 264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~ 343 (562)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~------------~~~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK------------NVS 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS------------CCG
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC------------Cch
Confidence 3456778888888887773 33 46777888888888888776554 677777888887777765 222
Q ss_pred ccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCC
Q 048635 344 DIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS 423 (562)
Q Consensus 344 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 423 (562)
.+..+++|+.|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+.. . +..
T Consensus 102 --~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~-l~~ 171 (308)
T 1h6u_A 102 --AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT---P-LAN 171 (308)
T ss_dssp --GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTT
T ss_pred --hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh---h-hcC
Confidence 266677777777777777643 2 36777777777777777776443 667777777777777766433 1 556
Q ss_pred CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635 424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 503 (562)
Q Consensus 424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 503 (562)
+++|++|++++|++.+ ++. +..+++|++|++++|.+++.. .+..+++|+.|++
T Consensus 172 l~~L~~L~l~~n~l~~------------------------~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l 224 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD------------------------ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224 (308)
T ss_dssp CTTCCEEECCSSCCCC------------------------CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred CCCCCEEECCCCccCc------------------------Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEc
Confidence 6677777777776632 111 555666777777777766443 2566677777777
Q ss_pred CCCcccc
Q 048635 504 SMNNLSG 510 (562)
Q Consensus 504 s~n~l~~ 510 (562)
++|++++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 7776663
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.5e-22 Score=199.13 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=140.1
Q ss_pred CCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc-CC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcc
Q 048635 268 KYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI 345 (562)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~ 345 (562)
+.++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+ .+..+++|++|++++|.++ +..+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-----------DPIVNT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-----------HHHHHH
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-----------HHHHHH
Confidence 3444444444444433222 33344555555555544321 11 2244455555555555433 122222
Q ss_pred ccCCCCCcCEEECcCC-ccccc-CCccCCCCCCCCEEEcccC-CCCCc-chHHhhcCC-CCCEEEccCcc--cceecCCC
Q 048635 346 IFPRNCGLHILDLSGN-QLQGV-VPKSLANCNMLQVLDFRNN-HISDN-FPCWLRNAS-SLQVLVLRSNN--FSGHISYP 418 (562)
Q Consensus 346 ~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n~--l~~~~~~~ 418 (562)
+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++. ..++
T Consensus 138 -l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~ 215 (336)
T 2ast_B 138 -LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-SDLS 215 (336)
T ss_dssp -HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHHH
T ss_pred -HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-HHHH
Confidence 455666777777777 45542 4445666777888888888 77653 456677777 88888888874 331 1113
Q ss_pred CCCCCCCCCCEEEcCCCc-CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCC
Q 048635 419 RNNVSWPLLQIVDFASNK-FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLK 496 (562)
Q Consensus 419 ~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~ 496 (562)
..+..+++|++|++++|. + ++..+..+..+++|+.|++++|. ++......+..++
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVML-----------------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTC-----------------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred HHHhhCCCCCEEeCCCCCcC-----------------------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 445567788888888887 4 23445567778888899998884 4333333677888
Q ss_pred CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCC
Q 048635 497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHV 542 (562)
Q Consensus 497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 542 (562)
+|++|++++| ++......+. .+|+.|++++|++++..|.....
T Consensus 273 ~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 273 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 8999999888 5543333332 24666778888998888876543
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.2e-21 Score=179.73 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=109.8
Q ss_pred CCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCC-CcceEECCCCcCcccCCccccCCCCCcCEEECcC-CcccccCCc
Q 048635 293 QLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNN-LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG-NQLQGVVPK 369 (562)
Q Consensus 293 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~ 369 (562)
++++|++++|.+++..+ .+..+++|++|++++|. ++ .++...|.++++|++|++++ |.+++..+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 34444444444443322 23344444444444443 33 33333355555566666665 555555555
Q ss_pred cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC---EEEccCc-ccceecCCCCCCCCCCCCC-EEEcCCCcCCCcCChh
Q 048635 370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ---VLVLRSN-NFSGHISYPRNNVSWPLLQ-IVDFASNKFGGRLSQK 444 (562)
Q Consensus 370 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~ 444 (562)
.|..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.... +..+..+++|+ +|++++|++.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~------ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT------ 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC------
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc------
Confidence 55666666666666666655 333 55555665 6666666 565544 44455666666 6666666652
Q ss_pred hhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCC-CCCCeeeCCCCcccccChhhhcCCCCC
Q 048635 445 CSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL-KQIESLDLSMNNLSGKIPAQLASLNFL 522 (562)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L 522 (562)
.+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|
T Consensus 170 ------------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L 228 (239)
T 2xwt_C 170 ------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHL 228 (239)
T ss_dssp ------------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTC
T ss_pred ------------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccC
Confidence 122222222567777777774 765555667777 777777777777773 4432 56677
Q ss_pred CeEeCcCC
Q 048635 523 SVLNLSYN 530 (562)
Q Consensus 523 ~~L~l~~n 530 (562)
+.|+++++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 77777765
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=176.91 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=89.0
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
.++.|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC--hhHhcccCCCCEEE
Confidence 4556666666655555555555666666666666665555555555566666666666555433 34445556666666
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
+++|+++ +..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 114 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 114 LGGNQLK-----------------------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCCCcCC-----------------------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 6666552 12222344555566666666666544444555566666666666666555
Q ss_pred ChhhhcCCCCCCeEeCcCCcceec
Q 048635 512 IPAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 512 ~p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
.+..+..+++|++|++++|++.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555555556666666666665544
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5.1e-22 Score=192.77 Aligned_cols=231 Identities=17% Similarity=0.202 Sum_probs=174.1
Q ss_pred CCCcEEEccCCcccccCCc---cCCCCCCCCeeeCcCCcccccCCC-C--CCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635 268 KYLTRVDLRSCSFTGPIPT---STTNLTQLFHVDFSSNHFSGPIPS-F--HESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341 (562)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~-~--~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~ 341 (562)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..+. + ..+++|++|++++|.++.. ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--------~~~ 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--------RSW 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--------TSS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--------hhh
Confidence 3578888888877532111 122346799999999999876554 3 7889999999999987620 001
Q ss_pred CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCc--c--hHHhhcCCCCCEEEccCcccceecCC
Q 048635 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN--F--PCWLRNASSLQVLVLRSNNFSGHISY 417 (562)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~ 417 (562)
++...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++.....
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence 1122245788999999999999988888999999999999999998652 1 12346789999999999998743321
Q ss_pred CC-CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc---CCCCEEeCcCCcCccCcChhcc
Q 048635 418 PR-NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF---KSLYALNMSHNALTGSIPSSFG 493 (562)
Q Consensus 418 ~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l---~~L~~L~Ls~n~i~~~~p~~l~ 493 (562)
+. .+..+++|++|++++|++.+. .|+.+..+ ++|++|++++|+++ .+|..+.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~-----------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRAT-----------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCC-----------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCcc-----------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 11 235679999999999998543 34444444 79999999999999 6777764
Q ss_pred CCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635 494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 494 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 534 (562)
++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus 272 --~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8999999999999953 43 6788999999999999874
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.5e-22 Score=196.53 Aligned_cols=242 Identities=18% Similarity=0.252 Sum_probs=190.2
Q ss_pred CcEEEccCCcccccCCccCCCC--CCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc-CCccc
Q 048635 270 LTRVDLRSCSFTGPIPTSTTNL--TQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT-LSDII 346 (562)
Q Consensus 270 L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~-~~~~~ 346 (562)
++.++++++.+. +..+..+ +.++.+++++|.+.+..+.+..+++|++|++++|.++ +. ++..
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~~- 113 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-----------VSTLHGI- 113 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-----------HHHHHHH-
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-----------HHHHHHH-
Confidence 677888877765 3345555 7899999999999988888888999999999999765 22 4443
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCc-chHHhhcCCCCCEEEccCc-ccceecCCCCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDN-FPCWLRNASSLQVLVLRSN-NFSGHISYPRNNVS 423 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~ 423 (562)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHh
Confidence 788899999999999998888888999999999999999 67763 6677889999999999999 877431 1445667
Q ss_pred CC-CCCEEEcCCCc--CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCC
Q 048635 424 WP-LLQIVDFASNK--FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIE 499 (562)
Q Consensus 424 ~~-~L~~L~l~~n~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~ 499 (562)
++ +|++|++++|. +++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 193 l~~~L~~L~l~~~~~~~~~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQK----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp SCTTCCEEECCSCGGGSCH----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccCCCEEEeCCCcccCCH----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 88 99999999994 421 2345556778999999999999 7777888999999999
Q ss_pred eeeCCCCc-ccccChhhhcCCCCCCeEeCcCCcceecCCCCC-----CCCccccchHHHHh
Q 048635 500 SLDLSMNN-LSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK-----HVLPNFNLHRRQLQ 554 (562)
Q Consensus 500 ~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~~~~l~~~~~~l~ 554 (562)
+|++++|. +.......+..+++|++|++++| ++... ..++.+++..+++.
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCc
Confidence 99999995 43333336888999999999999 33321 33556666555544
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.6e-21 Score=179.34 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=164.2
Q ss_pred CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCc-ccccCCccCCCCCCCCEEEccc-CCCCCcc
Q 048635 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ-LQGVVPKSLANCNMLQVLDFRN-NHISDNF 391 (562)
Q Consensus 314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~ 391 (562)
.+++++|++++|.++ .++...|.++++|+.|++++|. +++..+.+|..+++|++|++++ |++++..
T Consensus 30 ~~~l~~L~l~~n~l~------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CTTCCEEEEESCCCS------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CCcccEEEEeCCcce------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 348999999999887 6666668999999999999997 8877777899999999999999 9999877
Q ss_pred hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC---EEEcCCC-cCCCcCChhhhhhhhhhhhhhhCCCccccccc
Q 048635 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ---IVDFASN-KFGGRLSQKCSTTLGMRYQATNKRCRDQATEE 467 (562)
Q Consensus 392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (562)
+..|..+++|++|++++|.+.+. +. +..+++|+ +|++++| .+. +..+..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~ 150 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNA 150 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccc---cc-cccccccccccEEECCCCcchh-----------------------hcCccc
Confidence 78899999999999999999863 33 77788888 9999999 773 333445
Q ss_pred ccCcCCCC-EEeCcCCcCccCcChhccCCCCCCeeeCCCCc-ccccChhhhcCC-CCCCeEeCcCCcceecCCCCCCCCc
Q 048635 468 MGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPAQLASL-NFLSVLNLSYNNLVGQIPTAKHVLP 544 (562)
Q Consensus 468 l~~l~~L~-~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~ 544 (562)
+..+++|+ .|++++|+++...+..|.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++..+..+..+.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 78899999 9999999999443444555 899999999995 997778889999 9999999999999955555566666
Q ss_pred cccchH
Q 048635 545 NFNLHR 550 (562)
Q Consensus 545 ~l~~~~ 550 (562)
.+.+..
T Consensus 230 ~L~l~~ 235 (239)
T 2xwt_C 230 ELIARN 235 (239)
T ss_dssp EEECTT
T ss_pred eeeccC
Confidence 666554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=185.06 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=141.7
Q ss_pred CCCcEEEccCCcccccCCccC--CCCCCCCeeeCcCCcccccCCC-----CCCCCCCCEEEcCCCCCcceEECCCCcCcc
Q 048635 268 KYLTRVDLRSCSFTGPIPTST--TNLTQLFHVDFSSNHFSGPIPS-----FHESRNLNYLDLSSNNLNGVLNLGRNNLNG 340 (562)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~ 340 (562)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. +..+++|++|++++|.+.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~------------ 158 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP------------ 158 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC------------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc------------
Confidence 345555555555555555544 5555666666666665543221 234667777777777665
Q ss_pred cCCccccCCCCCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCcch--H-HhhcCCCCCEEEccCcccce
Q 048635 341 TLSDIIFPRNCGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDNFP--C-WLRNASSLQVLVLRSNNFSG 413 (562)
Q Consensus 341 ~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~ 413 (562)
.++...+..+++|++|++++|++.+. .+..+..+++|++|++++|+++.... . .+..+++|++|++++|.+.+
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 44444477788888888888886542 12334678899999999999975322 1 35788999999999999987
Q ss_pred ecCCCCCCCCC---CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcCh
Q 048635 414 HISYPRNNVSW---PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS 490 (562)
Q Consensus 414 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~ 490 (562)
.. |..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |.
T Consensus 239 ~~--p~~~~~~~~~~~L~~L~Ls~N~l~------------------------~lp~~~~--~~L~~L~Ls~N~l~~~-~~ 289 (310)
T 4glp_A 239 TV--NPSAPRCMWSSALNSLNLSFAGLE------------------------QVPKGLP--AKLRVLDLSSNRLNRA-PQ 289 (310)
T ss_dssp CC--CSCCSSCCCCTTCCCEECCSSCCC------------------------SCCSCCC--SCCSCEECCSCCCCSC-CC
T ss_pred cc--hhhHHhccCcCcCCEEECCCCCCC------------------------chhhhhc--CCCCEEECCCCcCCCC-ch
Confidence 64 5555555 79999999999984 3344443 7999999999999954 43
Q ss_pred hccCCCCCCeeeCCCCcccc
Q 048635 491 SFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 491 ~l~~l~~L~~L~Ls~n~l~~ 510 (562)
+..+++|+.|++++|++++
T Consensus 290 -~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSC
T ss_pred -hhhCCCccEEECcCCCCCC
Confidence 6789999999999999974
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.3e-20 Score=180.54 Aligned_cols=195 Identities=24% Similarity=0.336 Sum_probs=156.2
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY 319 (562)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 319 (562)
...+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-hhhcCCCCCCE
Confidence 34477899999999988753 3 57888999999999998885433 88889999999999988754 46788889999
Q ss_pred EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635 320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS 399 (562)
Q Consensus 320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 399 (562)
|++++|.++ .++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..++
T Consensus 112 L~l~~n~l~------------~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~ 173 (308)
T 1h6u_A 112 LDLTSTQIT------------DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS 173 (308)
T ss_dssp EECTTSCCC------------CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred EECCCCCCC------------Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC
Confidence 999998876 3332 7788889999999998885433 7788999999999999988544 78899
Q ss_pred CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM 479 (562)
Q Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 479 (562)
+|++|++++|.+.+.. .+..+++|++|++++|++.+ .+ .+..+++|+.|++
T Consensus 174 ~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~------------------------~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 174 KLTTLKADDNKISDIS----PLASLPNLIEVHLKNNQISD------------------------VS-PLANTSNLFIVTL 224 (308)
T ss_dssp TCCEEECCSSCCCCCG----GGGGCTTCCEEECTTSCCCB------------------------CG-GGTTCTTCCEEEE
T ss_pred CCCEEECCCCccCcCh----hhcCCCCCCEEEccCCccCc------------------------cc-cccCCCCCCEEEc
Confidence 9999999999887644 26788899999999998842 22 2678889999999
Q ss_pred cCCcCcc
Q 048635 480 SHNALTG 486 (562)
Q Consensus 480 s~n~i~~ 486 (562)
++|.+++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 9999884
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.5e-23 Score=206.26 Aligned_cols=246 Identities=15% Similarity=0.189 Sum_probs=189.7
Q ss_pred cCCccCCCCCCCCeeeCcCCcccccC-----CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc------cCCCC
Q 048635 283 PIPTSTTNLTQLFHVDFSSNHFSGPI-----PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII------FPRNC 351 (562)
Q Consensus 283 ~~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~------~~~~~ 351 (562)
.++..+..+++|++|++++|.+.... ..+..+++|++|++++|.+. ++.+.+|..+ +..++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------RVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------SCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------ccccchhHHHHHHHHHHhhCC
Confidence 45566778899999999999987632 23678999999999998664 4455556542 47889
Q ss_pred CcCEEECcCCcccc----cCCccCCCCCCCCEEEcccCCCCCcchHHh----hcC---------CCCCEEEccCccccee
Q 048635 352 GLHILDLSGNQLQG----VVPKSLANCNMLQVLDFRNNHISDNFPCWL----RNA---------SSLQVLVLRSNNFSGH 414 (562)
Q Consensus 352 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~~~ 414 (562)
+|++|++++|.+++ .++..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|++...
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999999987 366778889999999999999976444443 334 8999999999998622
Q ss_pred --cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc----cCc
Q 048635 415 --ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT----GSI 488 (562)
Q Consensus 415 --~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~----~~~ 488 (562)
..+...+..+++|++|++++|+++..-. ....+..+..+++|+.|+|++|.++ ..+
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGI------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHH------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHH------------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 1112455678899999999999842100 0122336788999999999999996 567
Q ss_pred ChhccCCCCCCeeeCCCCccccc----ChhhhcC--CCCCCeEeCcCCccee----cCCCCC----CCCccccchHHHHh
Q 048635 489 PSSFGNLKQIESLDLSMNNLSGK----IPAQLAS--LNFLSVLNLSYNNLVG----QIPTAK----HVLPNFNLHRRQLQ 554 (562)
Q Consensus 489 p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~--l~~L~~L~l~~n~l~~----~~p~~~----~~~~~l~~~~~~l~ 554 (562)
|..+..+++|++|+|++|++++. +|..+.. +++|++|++++|++++ .+|... ..+..+++.+|++.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 88899999999999999999875 5667744 8999999999999997 466543 66777777776654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.1e-22 Score=201.98 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=60.8
Q ss_pred CcCEEECcCCcccccCCcc----CCCC-CCCCEEEcccCCCCCc----chHHhhc-CCCCCEEEccCcccceecC--CCC
Q 048635 352 GLHILDLSGNQLQGVVPKS----LANC-NMLQVLDFRNNHISDN----FPCWLRN-ASSLQVLVLRSNNFSGHIS--YPR 419 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~--~~~ 419 (562)
+|++|++++|.+++..+.. +..+ ++|++|+|++|.+.+. ++..+.. .++|++|++++|.+..... +..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 5666666666665444332 2233 3666666666666552 2333333 3466666666666653210 112
Q ss_pred CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc
Q 048635 420 NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488 (562)
Q Consensus 420 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 488 (562)
.+..+++|++|++++|.+.+..+..+ ..++..+..+++|++|++++|.+.+..
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~----------------~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQC----------------KALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHH----------------HHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHH----------------HHHHHHhccCCceEEEecCCCcCCCcc
Confidence 33445556666666665432222211 122334455566666666666665443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.9e-19 Score=163.82 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=103.3
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
+++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCCCEEE
Confidence 4666666666666555555666666666666666666655555666666777777666666443 34456666777777
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
+++|++. +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 107 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 107 LNTNQLQ-----------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred cCCCcCc-----------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 7776663 2223335666777777777777775555556777777777777776653
Q ss_pred ChhhhcCCCCCCeEeCcCCcceecCCCCCCCCc
Q 048635 512 IPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP 544 (562)
Q Consensus 512 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 544 (562)
.+++|++|+++.|+++|.+|..+..++
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345677777777777777776555443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.6e-19 Score=162.95 Aligned_cols=143 Identities=19% Similarity=0.175 Sum_probs=80.4
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCc
Confidence 445555555555555555444444555555666666666555544444555566666666666555433 334455566
Q ss_pred CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506 (562)
Q Consensus 427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n 506 (562)
|++|++++|+++ +..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|
T Consensus 126 L~~L~l~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n 175 (208)
T 2o6s_A 126 LKDLRLYQNQLK-----------------------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN 175 (208)
T ss_dssp CCEEECCSSCCS-----------------------CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHH
T ss_pred CCEEECCCCccc-----------------------eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHH
Confidence 666666666552 1222334556666666666665552 3456667777777
Q ss_pred cccccChhhhcCCCC
Q 048635 507 NLSGKIPAQLASLNF 521 (562)
Q Consensus 507 ~l~~~~p~~l~~l~~ 521 (562)
+++|.+|+.++.++.
T Consensus 176 ~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 176 KHSGVVRNSAGSVAP 190 (208)
T ss_dssp HCTTTBBCTTSSBCT
T ss_pred hCCceeeccCccccC
Confidence 777766666655544
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1e-18 Score=172.43 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=95.7
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCE-EEcCCCCCcceEECCCCcCcccCCcc
Q 048635 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNY-LDLSSNNLNGVLNLGRNNLNGTLSDI 345 (562)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~-L~l~~n~l~~~l~l~~~~~~~~~~~~ 345 (562)
++++|++++|+++...+..|.++++|++|++++|.+.+.++ .|..++++.+ +.+..|.++ .++..
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~------------~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL------------YINPE 98 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC------------EECTT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc------------ccCch
Confidence 34444444444443333334444444444444444433222 2334444333 223333333 33333
Q ss_pred ccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEccc-CCCCCcchHHhhcCC-CCCEEEccCcccceecCCCCCCCC
Q 048635 346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRN-NHISDNFPCWLRNAS-SLQVLVLRSNNFSGHISYPRNNVS 423 (562)
Q Consensus 346 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~ 423 (562)
.|..+++|+.|++++|++....+..+....++..+++.+ +.+....+..|..++ .++.|++++|+++.. +.....
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i---~~~~f~ 175 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI---HNSAFN 175 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE---CTTSST
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC---Chhhcc
Confidence 355555555555555555544444444444455555543 234333333333332 355555555555533 223333
Q ss_pred CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635 424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 503 (562)
Q Consensus 424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 503 (562)
..+|+++++++++..+.+| +..|..+++|++|++++|+++...+.. +.+|+.|.+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~----------------------~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~ 230 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELP----------------------NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRA 230 (350)
T ss_dssp TEEEEEEECTTCTTCCCCC----------------------TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEEC
T ss_pred ccchhHHhhccCCcccCCC----------------------HHHhccCcccchhhcCCCCcCccChhh---hccchHhhh
Confidence 4455555555433211111 123455556666666666665322222 233333333
Q ss_pred CCCcccccChhhhcCCCCCCeEeCcC
Q 048635 504 SMNNLSGKIPAQLASLNFLSVLNLSY 529 (562)
Q Consensus 504 s~n~l~~~~p~~l~~l~~L~~L~l~~ 529 (562)
.++.--..+|. +.++++|+.+++++
T Consensus 231 l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 231 RSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCCcCcCCC-chhCcChhhCcCCC
Confidence 33222224442 45556666666554
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.3e-18 Score=180.44 Aligned_cols=191 Identities=25% Similarity=0.381 Sum_probs=152.9
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC
Q 048635 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP 348 (562)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~ 348 (562)
+++.|++++|.+++ +|..+. ++|++|++++|.+.. +| ..+++|++|++++|.++ .+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~------------~ip~--l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLS------------TLPE--LP 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS------------CCCC--CC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCC------------Ccch--hh
Confidence 79999999999986 666553 789999999999984 44 56789999999999887 4665 33
Q ss_pred CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 428 (562)
. +|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++. +. +. ++|+
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l---p~-l~--~~L~ 183 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL---PE-LP--ESLE 183 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC-CC--TTCC
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc---ch-hh--CCCC
Confidence 3 79999999999986 555 68899999999999988 444 578999999999999864 34 43 8999
Q ss_pred EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC-----cCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR-----FKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 503 (562)
Q Consensus 429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-----l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 503 (562)
.|++++|+++ .+ |. +.. .+.|+.|++++|.|+ .+|..+..+++|+.|+|
T Consensus 184 ~L~Ls~N~L~-~l-----------------------p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 184 ALDVSTNLLE-SL-----------------------PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp EEECCSSCCS-SC-----------------------CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred EEECcCCCCC-ch-----------------------hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 9999999985 22 22 222 233499999999999 67888888999999999
Q ss_pred CCCcccccChhhhcCCCC
Q 048635 504 SMNNLSGKIPAQLASLNF 521 (562)
Q Consensus 504 s~n~l~~~~p~~l~~l~~ 521 (562)
++|++++.+|..+..++.
T Consensus 238 ~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CSSSCCHHHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHhhc
Confidence 999999988888777543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.1e-18 Score=170.09 Aligned_cols=237 Identities=18% Similarity=0.124 Sum_probs=180.0
Q ss_pred cEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCC
Q 048635 271 TRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR 349 (562)
Q Consensus 271 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~ 349 (562)
++++.+++.++ .+|..+ .+++++|++++|.++...+ .|.++++|++|++++|.+. +.++..+|.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-----------~~i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-----------EVIEADVFSN 77 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-----------CEECTTSBCS
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-----------CccChhHhhc
Confidence 56777888887 566655 3689999999999997665 4789999999999999875 3567767888
Q ss_pred CCCcCE-EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccC-cccceecCCCCCCCCC-CC
Q 048635 350 NCGLHI-LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS-NNFSGHISYPRNNVSW-PL 426 (562)
Q Consensus 350 ~~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~ 426 (562)
++++++ +.+.+|+++...+++|..+++|++|++++|++....+..+.....+..+++.+ +.+.... ...+..+ ..
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~ 155 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFE 155 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSS
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc--ccchhhcchh
Confidence 888876 56677899988899999999999999999999987666666777888899865 5566554 4445554 46
Q ss_pred CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC-CcCccCcChhccCCCCCCeeeCCC
Q 048635 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSM 505 (562)
Q Consensus 427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~p~~l~~l~~L~~L~Ls~ 505 (562)
++.|++++|++. .++.......+|++|++++ |.++...++.|..+++|++|++++
T Consensus 156 l~~L~L~~N~i~------------------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 156 SVILWLNKNGIQ------------------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp CEEEECCSSCCC------------------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhhcccccccc------------------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 899999999983 3444455567899999986 566644446789999999999999
Q ss_pred CcccccChhhhcCCCCCCeEeCcCCcceecCCC--CCCCCccccchH
Q 048635 506 NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT--AKHVLPNFNLHR 550 (562)
Q Consensus 506 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~~~~l~~~~ 550 (562)
|+++. +|. ..+.+|+.|.+.++.-...+|. .+..+..+++.+
T Consensus 212 N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 212 TRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcCc-cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99994 553 2356777777777665667774 334444444443
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=158.71 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=92.6
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF 432 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 432 (562)
+.+++++|.++. +|..+ ...+++|++++|++++..+ ..|..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEEC
Confidence 455555555553 33333 2334566666666655432 33556666666666666666544 445566666666666
Q ss_pred CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC
Q 048635 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI 512 (562)
Q Consensus 433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 512 (562)
++|.+. +..+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..
T Consensus 89 s~N~l~-----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 89 TSNRLE-----------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CSSCCC-----------------------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCCccC-----------------------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 666652 223344566666777777777776666666666777777777777776666
Q ss_pred hhhhcCCCCCCeEeCcCCcceec
Q 048635 513 PAQLASLNFLSVLNLSYNNLVGQ 535 (562)
Q Consensus 513 p~~l~~l~~L~~L~l~~n~l~~~ 535 (562)
|..+..+++|++|++++|++.+.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECS
T ss_pred HHHhcCCCCCCEEEecCcCCcCC
Confidence 66666677777777777766543
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=171.68 Aligned_cols=156 Identities=22% Similarity=0.146 Sum_probs=73.1
Q ss_pred cCEEECcCCcccccCCccCC-CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 353 LHILDLSGNQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
++.|++++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++.... +..+..+++|++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEEE
Confidence 44444444444444444443 4445555555555554444444444555555555555544433 33444445555555
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc---cCCCCCCeeeCCCCcc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF---GNLKQIESLDLSMNNL 508 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l---~~l~~L~~L~Ls~n~l 508 (562)
+++|++. +..+..+..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|++
T Consensus 119 L~~N~i~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 119 LYNNHIV-----------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCCccc-----------------------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 5555442 2223334445555555555555553222222 3455555555555555
Q ss_pred cccChhhhcCCCC--CCeEeCcCCcce
Q 048635 509 SGKIPAQLASLNF--LSVLNLSYNNLV 533 (562)
Q Consensus 509 ~~~~p~~l~~l~~--L~~L~l~~n~l~ 533 (562)
++..+..+..++. |+.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5444444444444 255555555544
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.3e-18 Score=157.74 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=73.4
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
+++.|++++|.+++..+..|..+++|++|+|++|++.+..|..|..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP--KSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC--HhHccCCCCCCEEE
Confidence 4666666666666555556666666666666666666655556666666666666666665433 33344555555555
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+++|++. +..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus 111 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKIN-----------------------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCC-----------------------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555542 222334444555555555555555444444555555555555555543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.6e-18 Score=177.24 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=152.1
Q ss_pred CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS 324 (562)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 324 (562)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++.+. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 79999999999986 56544 378999999999998 566 457899999999999987444 543 899999999
Q ss_pred CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL 404 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 404 (562)
|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|++|
T Consensus 130 N~l~------------~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L 185 (571)
T 3cvr_A 130 NQLT------------MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL 185 (571)
T ss_dssp SCCS------------CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE
T ss_pred CcCC------------CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE
Confidence 9887 4555 46789999999999986 554 57899999999999988 555 55 899999
Q ss_pred EccCcccceecCCCCCCCCCCCC-------CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635 405 VLRSNNFSGHISYPRNNVSWPLL-------QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477 (562)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L 477 (562)
++++|.++.. +. +.. +| +.|++++|+++ .+|..+..+++|+.|
T Consensus 186 ~Ls~N~L~~l---p~-~~~--~L~~~~~~L~~L~Ls~N~l~------------------------~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 186 DVSTNLLESL---PA-VPV--RNHHSEETEIFFRCRENRIT------------------------HIPENILSLDPTCTI 235 (571)
T ss_dssp ECCSSCCSSC---CC-CC----------CCEEEECCSSCCC------------------------CCCGGGGGSCTTEEE
T ss_pred ECcCCCCCch---hh-HHH--hhhcccccceEEecCCCcce------------------------ecCHHHhcCCCCCEE
Confidence 9999999844 33 333 66 99999999983 466777789999999
Q ss_pred eCcCCcCccCcChhccCCCC
Q 048635 478 NMSHNALTGSIPSSFGNLKQ 497 (562)
Q Consensus 478 ~Ls~n~i~~~~p~~l~~l~~ 497 (562)
+|++|.+++.+|..|..++.
T Consensus 236 ~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ECCSSSCCHHHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHhhc
Confidence 99999999888888877654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.7e-18 Score=164.54 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635 289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368 (562)
Q Consensus 289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (562)
..+++|+.|++++|.+... +.+..+++|++|++++|.++ .++. +..+++|+.|++++|.+++ +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~------------~~~~--l~~l~~L~~L~l~~n~l~~-~- 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------------DIKP--LANLKNLGWLFLDENKVKD-L- 105 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--GTTCTTCCEEECCSSCCCC-G-
T ss_pred hhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccC------------CCcc--cccCCCCCEEECCCCcCCC-C-
Confidence 4556677777777766543 44556666666666666554 2222 5555666666666666653 2
Q ss_pred ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448 (562)
Q Consensus 369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 448 (562)
..+..+++|++|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~--------- 170 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISD--------- 170 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCC---------
T ss_pred hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCcccc---------
Confidence 2355666666666666666553 2355566666666666655532 234455555555555555421
Q ss_pred hhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+++ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++
T Consensus 171 ---------------~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 ---------------IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---------------CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred ---------------chh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 111 4445555555555555553 22 2455555555555555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.7e-18 Score=156.21 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=78.9
Q ss_pred CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430 (562)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 430 (562)
++|+.|++++|.+++..+..+..+++|++|+|++|++....+..|..+++|++|++++|.++... +..+..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC--hhHhCcchhhCeE
Confidence 45666666666666655666666666666666666666555555566666666666666665433 3444555666666
Q ss_pred EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
++++|++. .+|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 118 ~Ls~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 118 FMCCNKLT------------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCC------------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred eccCCccc------------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 66666552 334445555566666666666654444455555666666666665553
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.9e-18 Score=178.23 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=139.7
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC
Q 048635 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP 348 (562)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~ 348 (562)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+... +.+..+++|+.|+|++|.+. .++. +.
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~------------~~~~--l~ 84 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------------DIKP--LT 84 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCC------------CCGG--GG
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCC------------CChh--hc
Confidence 4455566666665433 245678899999999888753 56778888999888888776 3333 66
Q ss_pred CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 428 (562)
.+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+
T Consensus 85 ~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~ 156 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLD 156 (605)
T ss_dssp GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCS
T ss_pred cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCC
Confidence 77888888888888874 33 678888888888888888873 3477788888888888887753 4566778888
Q ss_pred EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508 (562)
Q Consensus 429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l 508 (562)
.|+|++|.+.+ ..+ +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|++
T Consensus 157 ~L~Ls~N~l~~-----------------------~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 157 TLSLEDNQISD-----------------------IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCC-----------------------CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEE
T ss_pred EEECcCCcCCC-----------------------chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcC
Confidence 88888887732 222 66777888888888888753 3 577788888888888887
Q ss_pred ccc
Q 048635 509 SGK 511 (562)
Q Consensus 509 ~~~ 511 (562)
++.
T Consensus 210 ~~~ 212 (605)
T 1m9s_A 210 LNK 212 (605)
T ss_dssp ECC
T ss_pred cCC
Confidence 753
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.6e-18 Score=152.49 Aligned_cols=154 Identities=14% Similarity=0.232 Sum_probs=123.4
Q ss_pred CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCC
Q 048635 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427 (562)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 427 (562)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.. +..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc--ChhhcCCCCC
Confidence 34456888888888887 444 577888999999999977653 36778999999999999988655 6778889999
Q ss_pred CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCCeeeCCCC
Q 048635 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMN 506 (562)
Q Consensus 428 ~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls~n 506 (562)
++|++++|+++ +..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|
T Consensus 115 ~~L~Ls~n~i~-----------------------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 115 TLLDISHSAHD-----------------------DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CEEECCSSBCB-----------------------GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred CEEEecCCccC-----------------------cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence 99999999884 3445667889999999999998 66 455 6899999999999999
Q ss_pred cccccChhhhcCCCCCCeEeCcCCccee
Q 048635 507 NLSGKIPAQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 507 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 534 (562)
++++ ++ .+..+++|++|++++|++.+
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9995 44 68899999999999999864
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.8e-17 Score=151.70 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=103.5
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA 433 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 433 (562)
+.++++++.++ .+|..+. +++++|++++|++.+..+..|..+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECC
Confidence 45666666666 3444332 56777777777777665656777777777777777777655 6667777777777777
Q ss_pred CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh
Q 048635 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513 (562)
Q Consensus 434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 513 (562)
+|+++ ...+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+
T Consensus 89 ~N~l~-----------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 89 GNKIT-----------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcCC-----------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 77763 1222335566777777777777776666777777777777777777776666
Q ss_pred hhhcCCCCCCeEeCcCCccee
Q 048635 514 AQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 514 ~~l~~l~~L~~L~l~~n~l~~ 534 (562)
..+..+++|++|++++|++..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 667777777777777777653
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1e-17 Score=160.54 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=123.9
Q ss_pred cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD 344 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~ 344 (562)
..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~------------~~~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK------------DLSS 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------------CGGG
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC------------CChh
Confidence 4567788888888877633 3 36777888888888888776554 777788888888887765 2332
Q ss_pred cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635 345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424 (562)
Q Consensus 345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 424 (562)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+.. + +..+
T Consensus 108 --l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~--~--l~~l 177 (291)
T 1h6t_A 108 --LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--P--LAGL 177 (291)
T ss_dssp --GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--G--GTTC
T ss_pred --hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch--h--hcCC
Confidence 66777788888888877753 4567778888888888888774 45777888888888888777544 2 6677
Q ss_pred CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486 (562)
Q Consensus 425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~ 486 (562)
++|++|++++|.+++ + +.+..+++|+.|++++|.++.
T Consensus 178 ~~L~~L~L~~N~i~~------------------------l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSKNHISD------------------------L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCSSCCCB------------------------C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCCCcCCC------------------------C-hhhccCCCCCEEECcCCcccC
Confidence 888888888887732 2 236677788888888887774
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.9e-17 Score=149.90 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=126.1
Q ss_pred CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
..+.++.+++.++ .+|..+ .++|++|+|++|.+.+..+..|..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--hhhcccCCCcCEEE
Confidence 4567888888877 445444 378899999999998877888888999999999999887554 55677889999999
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
+++|+++ +..+..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|++++.
T Consensus 95 Ls~N~l~-----------------------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 95 LGTNQLT-----------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCC-----------------------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 9999883 333445677889999999999998 7788888899999999999999876
Q ss_pred ChhhhcCCCCCCeEeCcCCcceecCC
Q 048635 512 IPAQLASLNFLSVLNLSYNNLVGQIP 537 (562)
Q Consensus 512 ~p~~l~~l~~L~~L~l~~n~l~~~~p 537 (562)
.+..+..+++|++|++++|++.+..+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 66778888999999999998876544
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=151.13 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=78.3
Q ss_pred cCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635 353 LHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD 431 (562)
Q Consensus 353 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 431 (562)
++.|++++|.+++..+ ..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ--HKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--GGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC--HhHhcCCcCCCEEE
Confidence 3455555555554322 23445555555555555555544445555555555555555555433 33445555555555
Q ss_pred cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
+++|++. +..+..+..+++|+.|+|++|.+++..|..|..+++|++|++++|.+...
T Consensus 112 Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 112 LRSNRIT-----------------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTSCCC-----------------------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCCcCC-----------------------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 5555552 23345566677777777777777766677777777778888887777653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.3e-17 Score=162.22 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 428 (562)
.+++|+.|++++|.+++..+..|..+++|++|+|++|++....+..|..+++|++|+|++|.+.... +..+..+++|+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~ 139 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQ 139 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCC
Confidence 4445555555555555444445555555555555555555544444555555555555555555443 44555555555
Q ss_pred EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCC--CCeeeCCCC
Q 048635 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ--IESLDLSMN 506 (562)
Q Consensus 429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~--L~~L~Ls~n 506 (562)
+|++++|++++ +|.. ....+..+++|+.|+|++|.+++..+..+..++. ++.|+|++|
T Consensus 140 ~L~L~~N~l~~-l~~~-------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 140 KLYLSQNQISR-FPVE-------------------LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EEECCSSCCCS-CCGG-------------------GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EEECCCCcCCe-eCHH-------------------HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 55555555521 1100 0001134566666666666666444455555555 366666666
Q ss_pred ccc
Q 048635 507 NLS 509 (562)
Q Consensus 507 ~l~ 509 (562)
.+.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.7e-17 Score=171.62 Aligned_cols=198 Identities=20% Similarity=0.244 Sum_probs=156.6
Q ss_pred CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS 324 (562)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 324 (562)
.+..+.+..+.+.... .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3445566666665443 24678889999999999874 33 58889999999999999987655 88899999999999
Q ss_pred CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL 404 (562)
Q Consensus 325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 404 (562)
|.+. .++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|
T Consensus 97 N~l~------------~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 97 NKIK------------DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp SCCC------------CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred CCCC------------CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 9886 344 278888999999999999853 4588899999999999999885 568889999999
Q ss_pred EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635 405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL 484 (562)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i 484 (562)
+|++|.+.+.. + +..+++|+.|+|++|++.+ + +.+..+++|+.|+|++|.+
T Consensus 159 ~Ls~N~l~~~~--~--l~~l~~L~~L~Ls~N~i~~------------------------l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 159 SLEDNQISDIV--P--LAGLTKLQNLYLSKNHISD------------------------L-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCB------------------------C-GGGTTCTTCSEEECCSEEE
T ss_pred ECcCCcCCCch--h--hccCCCCCEEECcCCCCCC------------------------C-hHHccCCCCCEEEccCCcC
Confidence 99999998654 3 7889999999999999842 2 3477889999999999999
Q ss_pred ccCcChhccC
Q 048635 485 TGSIPSSFGN 494 (562)
Q Consensus 485 ~~~~p~~l~~ 494 (562)
.+.....+..
T Consensus 210 ~~~p~~~~~~ 219 (605)
T 1m9s_A 210 LNKPINHQSN 219 (605)
T ss_dssp ECCCCCCCSS
T ss_pred cCCccccccc
Confidence 8544333333
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.2e-17 Score=157.32 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=32.7
Q ss_pred ccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635 468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 534 (562)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. ..+..+++|++|++++|++.+
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 44455555555555555532 2 345555555555555555533 344555555555555555543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-17 Score=155.23 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=83.3
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc
Q 048635 267 LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII 346 (562)
Q Consensus 267 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~ 346 (562)
+..+..++++++.+++.. .+..+++|+.|++++|.+... +.+..+++|++|++++|.++ .++.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~------------~~~~-- 80 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQIS------------DLSP-- 80 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccC------------CChh--
Confidence 445566666666666322 455667777777777766643 35566666666666666655 3332
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
+..+++|+.|++++|++++. +. +.. ++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++
T Consensus 81 l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~----~~l~~l~~ 151 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI----VMLGFLSK 151 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC----GGGGGCTT
T ss_pred hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC----hHHccCCC
Confidence 55566666666666666642 22 222 5666666666666653 2 355566666666666665542 13445555
Q ss_pred CCEEEcCCCcC
Q 048635 427 LQIVDFASNKF 437 (562)
Q Consensus 427 L~~L~l~~n~~ 437 (562)
|++|++++|++
T Consensus 152 L~~L~L~~N~i 162 (263)
T 1xeu_A 152 LEVLDLHGNEI 162 (263)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 55555555555
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=143.01 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274 (562)
Q Consensus 195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 274 (562)
+++|++|++++|.++ .++ .+..+++|++|++++|.+ ..++.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC--SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC--CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555555 333 355555555555555533 2223444455555555555555444444455555555555
Q ss_pred ccCCcccccCCccCCCCCCCCeeeCcCCc
Q 048635 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNH 303 (562)
Q Consensus 275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 303 (562)
+++|.+++..+..+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55555554444444444455555554444
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.3e-17 Score=158.68 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=131.6
Q ss_pred CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCc----CCCCCCCCCcCCCCC
Q 048635 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTS----FSGILPDPIGILKYL 270 (562)
Q Consensus 195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~~~~L 270 (562)
+++|+++++.. .++.....+|..+++|+.+++++|.+......+|..+.++..+...... .......++..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55566666655 5554555556666666666666665544444455554444444443311 111122234444444
Q ss_pred c-EEEccCCccc-ccCCccCCCCCCCCeeeCcCCcccccCCCC-CCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635 271 T-RVDLRSCSFT-GPIPTSTTNLTQLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF 347 (562)
Q Consensus 271 ~-~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~ 347 (562)
+ .+.+...... ......-....++..+.+.++-.......+ ..+++|+.+++.+|.++ .++..+|
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~------------~I~~~aF 246 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT------------TIPDFTF 246 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC------------EECTTTT
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc------------eecHhhh
Confidence 4 3333221110 000001112334444544433211111111 23678888888887776 7788778
Q ss_pred CCCCCcCEEECcCCcccccCCccCCCCCCCC-EEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQ-VLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426 (562)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 426 (562)
.++.+|+.+++.+| ++.....+|.++++|+ .+++.+ .++.+.+..|.+|++|+.+++.+|.+.... ..++..+++
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~ 322 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG--DELFGNGVP 322 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc--hhhhcCCcc
Confidence 88888899988887 7767778888888898 888888 777766778888889999998888888776 778888888
Q ss_pred CCEEEc
Q 048635 427 LQIVDF 432 (562)
Q Consensus 427 L~~L~l 432 (562)
|+.+..
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 888763
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.2e-16 Score=136.35 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCCCEEEcccCCCC-CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635 374 CNMLQVLDFRNNHIS-DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR 452 (562)
Q Consensus 374 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 452 (562)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~------------- 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG------------- 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-------------
Confidence 356667777777666 34555566677777777777776642 456667777777777777743
Q ss_pred hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc-ChhccCCCCCCeeeCCCCcccccCh---hhhcCCCCCCeEeCc
Q 048635 453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQIESLDLSMNNLSGKIP---AQLASLNFLSVLNLS 528 (562)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~ 528 (562)
.+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|+++
T Consensus 86 ----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 86 ----------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ----------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ----------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 24455566889999999999998542 2688899999999999999996555 478899999999999
Q ss_pred CCcceecCCC
Q 048635 529 YNNLVGQIPT 538 (562)
Q Consensus 529 ~n~l~~~~p~ 538 (562)
+|++. .+|.
T Consensus 156 ~n~~~-~~~~ 164 (168)
T 2ell_A 156 DREDQ-EAPD 164 (168)
T ss_dssp ETTSC-BCCS
T ss_pred CCChh-hccc
Confidence 99887 4553
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=5.1e-16 Score=138.85 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=65.6
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchH-HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF 432 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 432 (562)
+.++++++.++ .+|..+. .++++|++++|++.+..+. .+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEEC
Confidence 34444444443 2333221 1455555555555443332 2445555555555555554433 444445555555555
Q ss_pred CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511 (562)
Q Consensus 433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 511 (562)
++|+++ +..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++.
T Consensus 86 s~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIK-----------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCC-----------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCC-----------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555542 22233345556666666666666655555666666666666666666543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.9e-19 Score=184.77 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=23.8
Q ss_pred cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCC
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 302 (562)
...++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence 34566666777776665 55666666667777766554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=7.3e-16 Score=137.82 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=115.7
Q ss_pred CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCC-CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPR-NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT 456 (562)
Q Consensus 378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~ 456 (562)
+.++++++.++. +|..+. ++|++|++++|.+.+.. +. .+..+++|++|++++|+++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~------------------ 67 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLT------------------ 67 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCC------------------
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCC------------------
Confidence 789999999977 554433 48999999999998654 33 4789999999999999984
Q ss_pred hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536 (562)
Q Consensus 457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 536 (562)
+..|..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+..
T Consensus 68 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 68 -----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp -----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred -----CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 455677889999999999999999888888999999999999999999999999999999999999999998765
Q ss_pred C
Q 048635 537 P 537 (562)
Q Consensus 537 p 537 (562)
+
T Consensus 143 ~ 143 (192)
T 1w8a_A 143 H 143 (192)
T ss_dssp G
T ss_pred c
Confidence 5
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.8e-16 Score=151.86 Aligned_cols=268 Identities=10% Similarity=0.057 Sum_probs=151.3
Q ss_pred CCCCCEEEccCCcCc--ccCChhhhCCCCccEEeccCCCCCCCCCCCCCC--------CCCCCEEEccCCcCCCCCCCCC
Q 048635 195 LLNLTNLDLSQCDLR--GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK--------NSYLQNLNLANTSFSGILPDPI 264 (562)
Q Consensus 195 l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~ 264 (562)
+++|++|+|++|.+. ...... ++.++.+.+..+. .....|.. +++|+.+++.. .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566777777777665 221111 1222333333332 22334444 55666666655 5554445555
Q ss_pred cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635 265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD 344 (562)
Q Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~ 344 (562)
.++++|+.+++.+|.+....+..|..+.++..+....+...... ..+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-------------------------------~~i~~ 169 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK-------------------------------NRWEH 169 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS-------------------------------TTTTT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc-------------------------------ccccc
Confidence 66666666666665555444445554444444433332110000 01112
Q ss_pred cccCCCCCcC-EEECcCCc-ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC
Q 048635 345 IIFPRNCGLH-ILDLSGNQ-LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422 (562)
Q Consensus 345 ~~~~~~~~L~-~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (562)
..|.++..|+ .+.+.... +.......-....+++.+.+.++-...........+++|+++++.+|.++.+. ..++.
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~--~~aF~ 247 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP--DFTFA 247 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC--TTTTT
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec--Hhhhh
Confidence 2233333444 33333221 11111111123455667777665222211222234788888888888887766 67788
Q ss_pred CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCC-EEeCcCCcCccCcChhccCCCCCCee
Q 048635 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESL 501 (562)
Q Consensus 423 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~-~L~Ls~n~i~~~~p~~l~~l~~L~~L 501 (562)
.+++|+++++.+| + ......+|.++++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 248 ~~~~L~~l~l~~n-i-----------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-L-----------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TCTTCCEEECCTT-C-----------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCCCCEEECCcc-c-----------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 8888888888876 4 233345678888898 899888 7775667889999999999
Q ss_pred eCCCCcccccChhhhcCCCCCCeEeC
Q 048635 502 DLSMNNLSGKIPAQLASLNFLSVLNL 527 (562)
Q Consensus 502 ~Ls~n~l~~~~p~~l~~l~~L~~L~l 527 (562)
++++|+++...+.+|.++++|++++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998777778899999988864
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=3.8e-18 Score=178.04 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=123.4
Q ss_pred CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635 289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368 (562)
Q Consensus 289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (562)
...+.|+.|++++|.+...+..++.+++|+.|++++|.... .++.. +..+...+..|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~-----------~l~~l------------l~~~~~~~~~~ 402 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-----------TIILL------------MRALDPLLYEK 402 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHH------------HHHHCTGGGHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhh-----------hHHHH------------HHhcccccCCH
Confidence 45666777777777766554455566666666664442100 00000 00001223344
Q ss_pred ccCCCCCCCCEEE-cccCCCCCcch--------HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635 369 KSLANCNMLQVLD-FRNNHISDNFP--------CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG 439 (562)
Q Consensus 369 ~~l~~l~~L~~L~-L~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 439 (562)
..+..+++|+.|+ ++.|.+..... ..+. ...|+.|++++|.+++. |. +..+++|+.|++++|.++
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSCCC-
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCC---cC-ccccccCcEeecCccccc-
Confidence 4445555555555 34333222100 0011 13578888888887753 44 777888888888888872
Q ss_pred cCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC-hhhhcC
Q 048635 440 RLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLAS 518 (562)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~ 518 (562)
.+|..++.+++|+.|+|++|.+++ +| .|+.+++|++|+|++|++++.. |..+..
T Consensus 477 -----------------------~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 477 -----------------------ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp -----------------------CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred -----------------------ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 456677888888888888888885 56 7888888888888888888765 888888
Q ss_pred CCCCCeEeCcCCcceecCCCC
Q 048635 519 LNFLSVLNLSYNNLVGQIPTA 539 (562)
Q Consensus 519 l~~L~~L~l~~n~l~~~~p~~ 539 (562)
+++|++|++++|++++.+|..
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCEEEecCCcCCCCccHH
Confidence 888888888888888666543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.1e-15 Score=130.66 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCCCEEEcccCCCC-CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhh
Q 048635 375 NMLQVLDFRNNHIS-DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY 453 (562)
Q Consensus 375 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 453 (562)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~-------------- 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSG-------------- 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCS--------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccc--------------
Confidence 44555555555554 33444445555566666666655532 445556666666666666632
Q ss_pred hhhhCCCcccccccccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccCh---hhhcCCCCCCeEeCcC
Q 048635 454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIP---AQLASLNFLSVLNLSY 529 (562)
Q Consensus 454 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~~ 529 (562)
.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 79 ---------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 ---------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ---------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ---------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 2344456678899999999998853 34778899999999999999986655 5788899999998864
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=4.7e-14 Score=141.32 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=211.6
Q ss_pred cccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCC
Q 048635 71 FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGT 150 (562)
Q Consensus 71 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 150 (562)
.+|.++++|+.+++..+ ++..-..+|.+|++|+.+++.++- ......+|.++++|+.+.+..+ +..++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l---------~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV---------KMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC---------CEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc---------eEccchhhcccccchhhcccCc-eeeecc
Confidence 46888999999999754 665667778999999999987652 2333456788888887766543 444443
Q ss_pred ccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCC
Q 048635 151 ERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN 230 (562)
Q Consensus 151 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 230 (562)
.++..+..++..........+ ...+.++++|+.+.+..+. .......|..+.+|+.+.+..+
T Consensus 134 ---~aF~~~~~~~~~~~~~~~~i~--------------~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 134 ---EAFKGCDFKEITIPEGVTVIG--------------DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp ---TTTTTCCCSEEECCTTCCEEC--------------TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred ---eeeecccccccccCccccccc--------------hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 344444433322222211111 2236677888888887653 3355667778888888888766
Q ss_pred CCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCC
Q 048635 231 PLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310 (562)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 310 (562)
+.......|..+..|+.+.+..+... +.........|+.+.+... ++......+..+..++.+.+..+...-....
T Consensus 196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~ 271 (394)
T 4fs7_A 196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSL 271 (394)
T ss_dssp -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCT
T ss_pred -ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccc
Confidence 45555567777788888877665432 2233344567888887643 3334455677788888888877655434455
Q ss_pred CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCc
Q 048635 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN 390 (562)
Q Consensus 311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 390 (562)
+..+..++.+..... .++...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.+
T Consensus 272 F~~~~~l~~~~~~~~---------------~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSV---------------IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp TTTCTTCCEEEECSS---------------EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred cccccccceeccCce---------------eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence 677777887776543 345556888889999998765 55566778899999999999754 6665
Q ss_pred chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635 391 FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435 (562)
Q Consensus 391 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 435 (562)
...+|.+|.+|+.+.+..+ ++... ..++..+++|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIG--ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEEC--TTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEeh--HHHhhCCCCCCEEEECCC
Confidence 6678889999999999766 66555 678888999999988653
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=5.1e-14 Score=140.43 Aligned_cols=269 Identities=14% Similarity=0.170 Sum_probs=126.8
Q ss_pred CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274 (562)
Q Consensus 195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 274 (562)
+..++.+.+... ++.....+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.. .++.....+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355666666542 443445555553 5677766655 44444445554 3466666654 44444445566666666666
Q ss_pred ccCCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCc
Q 048635 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL 353 (562)
Q Consensus 275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L 353 (562)
+.+|.++......|. +.+|+.+.+..+ +... ...|..+++|+.+++..+ ++ .++..+|.+ ++|
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~------------~I~~~aF~~-~~L 250 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS------------TIGQEAFRE-SGI 250 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC------------EECTTTTTT-CCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc------------Ccccccccc-CCc
Confidence 666555533333333 355555555533 2221 223344555555555432 11 333333444 345
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA 433 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 433 (562)
+.+.+. +.++.....+|.+|++|+.+++.++.+.. +...... ..++..+++|+.+++.
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~--~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIH--PYCLEGCPKLARFEIP 308 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEEC--TTTTTTCTTCCEECCC
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEEC--HHHhhCCccCCeEEeC
Confidence 555442 22333334444445555555544443320 0000111 3344444444444444
Q ss_pred CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh
Q 048635 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513 (562)
Q Consensus 434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 513 (562)
. .+ ......+|.++++|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....+
T Consensus 309 ~-~i-----------------------~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 309 E-SI-----------------------RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp T-TC-----------------------CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred C-ce-----------------------EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 2 12 1112233455555566655433 443444556666 66666666665554444
Q ss_pred hhhcCCC-CCCeEeCcCCcc
Q 048635 514 AQLASLN-FLSVLNLSYNNL 532 (562)
Q Consensus 514 ~~l~~l~-~L~~L~l~~n~l 532 (562)
..|..++ .+++|++..+.+
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGH
T ss_pred ccccCCCCCccEEEeCHHHH
Confidence 4555553 555666555443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.2e-15 Score=133.39 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=71.5
Q ss_pred CcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635 352 GLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430 (562)
Q Consensus 352 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 430 (562)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL--DMLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC--CHHHHHCTTCCEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH--HHHHhhCCCCCEE
Confidence 3444555554444 33444444445555555555554443 33444455555555555544321 3333334555555
Q ss_pred EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCCCc
Q 048635 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSMNN 507 (562)
Q Consensus 431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~n~ 507 (562)
++++|.+++. ..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~----------------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDI----------------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSS----------------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcc----------------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5555554211 012446667778888888888775444 367778888888888887
Q ss_pred cc
Q 048635 508 LS 509 (562)
Q Consensus 508 l~ 509 (562)
+.
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 76
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=3e-16 Score=168.90 Aligned_cols=185 Identities=20% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC
Q 048635 292 TQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371 (562)
Q Consensus 292 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 371 (562)
+.++.|++.+|.+. . .....++.++|+.+.+.. +++..|.+. ++...+..+..|+.|+|++|.+. .+|..+
T Consensus 173 ~~~~~l~L~~n~~~-~----~~~~~l~~l~Ls~~~i~~-~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKD-E----ANQALLQHKKLSQYSIDE-DDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred CccceEEeeCCCCC-c----chhhHhhcCccCcccccC-cccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence 34555555554432 1 122345555665555431 122222221 22222445555555555555554 333334
Q ss_pred CCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhh
Q 048635 372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM 451 (562)
Q Consensus 372 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l 451 (562)
..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l-------------- 305 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYFYFFDNMV-------------- 305 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEEECCSSCC--------------
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEEECCCCCC--------------
Confidence 45555555555555555 24444555555555555555554 2244445555555555555544
Q ss_pred hhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCC-CCeeeCCCCcccccCh
Q 048635 452 RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ-IESLDLSMNNLSGKIP 513 (562)
Q Consensus 452 ~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p 513 (562)
+.+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|
T Consensus 306 ----------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 306 ----------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp ----------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ----------CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 133344455555555555555555444444433211 1224455555554444
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=2.2e-13 Score=136.48 Aligned_cols=334 Identities=12% Similarity=0.052 Sum_probs=167.7
Q ss_pred CcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecc
Q 048635 89 FTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLS 168 (562)
Q Consensus 89 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~ 168 (562)
++.+-..+|.+|.+|+.+.+..+ + ......+|.++++|+.+++..+ ++.++. .++..+++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i--------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-V--------REIGEFAFENCSKLEIINIPDS-VKMIGR---CTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-C--------CEECTTTTTTCTTCCEECCCTT-CCEECT---TTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-c--------cCcchhHhhCCCCCcEEEeCCC-ceEccc---hhhcccccchhhccc
Confidence 45455667888888888888654 2 2333456778888888887654 555544 455666666655544
Q ss_pred cCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCE
Q 048635 169 SCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248 (562)
Q Consensus 169 ~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 248 (562)
.+ +.. ....+|..+..++...... .......+|..+.+|+.
T Consensus 126 ~~-l~~------------------------------------i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~ 166 (394)
T 4fs7_A 126 LM-LKS------------------------------------IGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEY 166 (394)
T ss_dssp TT-CCE------------------------------------ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred Cc-eee------------------------------------ecceeeecccccccccCcc--ccccchhhhcccCCCcE
Confidence 32 111 1111222221111111111 11122223444444444
Q ss_pred EEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc
Q 048635 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN 328 (562)
Q Consensus 249 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 328 (562)
+.+..+. ......+|.++++|+.+.+..+ ++......+.++..|+.+.+..+... ....+....+|+.+.+.... +
T Consensus 167 i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~ 242 (394)
T 4fs7_A 167 VSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-T 242 (394)
T ss_dssp EECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-C
T ss_pred EecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-e
Confidence 4443322 1122334455555555555443 22233344555556665555544322 11222334456655554321 1
Q ss_pred ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccC
Q 048635 329 GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408 (562)
Q Consensus 329 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 408 (562)
.+...+|..+..++.+.+..+... ....++..+..++.+......+. ...|..+.+|+.+.+.+
T Consensus 243 ------------~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 243 ------------ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp ------------EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred ------------ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 333444666666777666655333 44556666677776666554332 23455666777777654
Q ss_pred cccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc
Q 048635 409 NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488 (562)
Q Consensus 409 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 488 (562)
+ +..+. ..++..+.+|+.+++..+ + ......+|.++++|+.+.+..+ ++...
T Consensus 307 ~-i~~I~--~~aF~~c~~L~~i~lp~~-v-----------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 307 S-VKFIG--EEAFESCTSLVSIDLPYL-V-----------------------EEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp T-CCEEC--TTTTTTCTTCCEECCCTT-C-----------------------CEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred c-cceec--hhhhcCCCCCCEEEeCCc-c-----------------------cEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 3 33333 445556666666666432 2 1122344566666666666555 44344
Q ss_pred ChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCe
Q 048635 489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV 524 (562)
Q Consensus 489 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 524 (562)
..+|.+|++|+.+++..+ ++ .+...|.++++|+.
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 456666777777766543 22 23345555665554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=128.63 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=92.6
Q ss_pred CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA 433 (562)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 433 (562)
+.++++++.++ .+|..+ .++|++|++++|.++. +|..|..+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECC
Confidence 56777777777 345443 3578888888888875 5567788888888888888887654 5566777777777777
Q ss_pred CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
+|+++ +..+..+..+++|+.|+|++|.++...+..|..+++|+.|++++|.+..
T Consensus 87 ~N~l~-----------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLR-----------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCC-----------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccC-----------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 77763 3334456777888888888888885555567778888888888887763
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=128.18 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=76.2
Q ss_pred cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF 432 (562)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 432 (562)
.+.++++++.++. +|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEEC
Confidence 5677777777764 34322 357777777777777765666677777777777777776443 334455556666666
Q ss_pred CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
++|.++ +..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 84 ~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQ-----------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcc-----------------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 665552 1222234455555555555555554333344555555555555555554
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=3.1e-13 Score=134.80 Aligned_cols=240 Identities=14% Similarity=0.105 Sum_probs=171.2
Q ss_pred CCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCC
Q 048635 158 FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSL 237 (562)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 237 (562)
.+..++.+.+..+ ++..... .+.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .+.....
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~------------aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~ 173 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKD------------AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE 173 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTT------------TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS
T ss_pred ecCCccEEEECCc-cCEehHh------------hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH
Confidence 4567777777542 3332222 23443 6999999876 66666777877 4799999987 4666677
Q ss_pred CCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCC
Q 048635 238 PNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRN 316 (562)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~ 316 (562)
.+|..+++|+.+++..|.++.....+|. +..|+.+.+..+ ++......|.++++|+.+++..+ +.... ..|.. .+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 7899999999999999999876666666 689999999854 66567778999999999999875 33333 34445 78
Q ss_pred CCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccc-----ccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ-----GVVPKSLANCNMLQVLDFRNNHISDNF 391 (562)
Q Consensus 317 L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~ 391 (562)
|+.+.+.. .++ .++..+|.++++|+.+++.++.+. .....+|.+|++|+.+++.+ .+..+.
T Consensus 250 L~~i~lp~-~i~------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 250 ITTVKLPN-GVT------------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp CSEEEEET-TCC------------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred ccEEEeCC-Ccc------------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 99999943 344 677777999999999999988765 45667788888888888873 466655
Q ss_pred hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436 (562)
Q Consensus 392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 436 (562)
..+|.+|++|+.+.+..+ +..+. ..++..+ +|+.+++.+|.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEEC--TTSSSSS-CCCEEEECCSS
T ss_pred hhhhcCCCCccEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCCC
Confidence 667777788888877544 44333 3444444 45555444443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.9e-15 Score=127.29 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635 351 CGLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429 (562)
Q Consensus 351 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 429 (562)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.. +..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL--EVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT--HHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH--HHHhhhCCCCCE
Confidence 34666666666665 45555556666666666666666654 44556666666666666665422 334444666666
Q ss_pred EEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCC
Q 048635 430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSM 505 (562)
Q Consensus 430 L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~ 505 (562)
|++++|++++. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDL----------------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSH----------------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCCh----------------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 66666665321 123557778889999999998886655 5788889999998863
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.2e-15 Score=159.32 Aligned_cols=185 Identities=22% Similarity=0.241 Sum_probs=111.7
Q ss_pred CCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635 301 SNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVL 380 (562)
Q Consensus 301 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 380 (562)
.|.+......+..++.|+.|+|++|.+. .+|...+ .+++|+.|+|++|.++ .+|..+..+++|++|
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIF------------NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275 (727)
T ss_dssp ------------CCCCCCEEECTTSCCS------------CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred ccceecChhhhccCCCCcEEECCCCCCC------------CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence 3444323344577888888998888876 6666634 7889999999999999 788889999999999
Q ss_pred EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh--hhhhhhhhC
Q 048635 381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL--GMRYQATNK 458 (562)
Q Consensus 381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~~~~~~ 458 (562)
+|++|.++. +|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++++.+|..+.... .+......+
T Consensus 276 ~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 276 DLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT---TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp ECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC---CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred eCcCCcCCc-cChhhcCCCCCCEEECCCCCCC---ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 999999995 6888999999999999999987 3477799999999999999999888776654332 222233355
Q ss_pred CCcccccccccCcCCCCEEeCcCC--------cCccCcChhccCCCCCCeeeCCCCccc
Q 048635 459 RCRDQATEEMGRFKSLYALNMSHN--------ALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 459 ~~~~~~~~~l~~l~~L~~L~Ls~n--------~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
.+.+.+|. .|+.|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 352 ~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 352 RPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCCCC------C-----------------------------------------CCC
T ss_pred cccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 66666654 3445666665 223333333444555555555555553
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=6.9e-14 Score=123.27 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=70.2
Q ss_pred CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhh
Q 048635 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN 457 (562)
Q Consensus 378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~ 457 (562)
+.+++++++++.. |.. ..++|++|++++|.+.+.. +..+..+++|++|++++|.++
T Consensus 10 ~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~------------------- 65 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQ------------------- 65 (177)
T ss_dssp TEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC-------------------
T ss_pred CEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcce-------------------
Confidence 4555555555542 222 1245666666666655433 334455566666666666552
Q ss_pred CCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635 458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536 (562)
Q Consensus 458 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 536 (562)
+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 66 ----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 66 ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 122233455556666666666666444444555666666666666666444444455566666666666655443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.6e-14 Score=125.78 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450 (562)
Q Consensus 371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 450 (562)
+..+++|++|++++|+++.. +......++|++|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~----------- 78 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICR----------- 78 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCE-----------
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccc-----------
Confidence 34556677777777776653 33223334777777777777653 456667777788887777731
Q ss_pred hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcCh--hccCCCCCCeeeCCCCcccccChh----hhcCCCCCCe
Q 048635 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIPA----QLASLNFLSV 524 (562)
Q Consensus 451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~ 524 (562)
..+..+..+++|+.|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|++
T Consensus 79 ------------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 79 ------------IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp ------------ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred ------------cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 11222467788888888888886 4554 6788888888888888887 4555 3778888888
Q ss_pred EeCcCCcce
Q 048635 525 LNLSYNNLV 533 (562)
Q Consensus 525 L~l~~n~l~ 533 (562)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 888888765
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=121.65 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=86.0
Q ss_pred eeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635 296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN 375 (562)
Q Consensus 296 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 375 (562)
.++++++.+...+..+ .++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+.+|..++
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~------------~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT------------LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCCC------------SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc------------hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 4445555444332222 235666666666554 45533 66677777777777777776667777778
Q ss_pred CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR 440 (562)
Q Consensus 376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 440 (562)
+|++|+|++|++++..+..|..+++|++|++++|.+.... +..+..+++|+.|++++|++...
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecC
Confidence 8888888888887776777777888888888888777544 45567778888888888877543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.8e-14 Score=125.59 Aligned_cols=132 Identities=19% Similarity=0.199 Sum_probs=79.8
Q ss_pred CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428 (562)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 428 (562)
.+++|+.|++++|.++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIG--EGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEEC--SCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccC--cchhhcCCCCC
Confidence 34455555555555552 232222223566666666665553 34555666666666666665432 22235566666
Q ss_pred EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccc--cccCcCCCCEEeCcCCcCccCcChh----ccCCCCCCeee
Q 048635 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATE--EMGRFKSLYALNMSHNALTGSIPSS----FGNLKQIESLD 502 (562)
Q Consensus 429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~p~~----l~~l~~L~~L~ 502 (562)
+|++++|+++ .++. .+..+++|+.|++++|.++ .+|.. +..+++|+.|+
T Consensus 92 ~L~L~~N~i~------------------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 92 ELILTNNSLV------------------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EEECCSCCCC------------------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EEECCCCcCC------------------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 6666666652 1222 5677888888899888888 45554 78889999999
Q ss_pred CCCCcccc
Q 048635 503 LSMNNLSG 510 (562)
Q Consensus 503 Ls~n~l~~ 510 (562)
+++|.+.+
T Consensus 147 ~~~n~~~~ 154 (176)
T 1a9n_A 147 FQKVKLKE 154 (176)
T ss_dssp TEECCHHH
T ss_pred CCcCCHHH
Confidence 99888764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=2.2e-16 Score=142.17 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=110.0
Q ss_pred CcCEEECcCCcccccCCc------cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCC
Q 048635 352 GLHILDLSGNQLQGVVPK------SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425 (562)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 425 (562)
.++.++++++.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.. ++..+..++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~ 93 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK---IENLDAVAD 93 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS---CSSHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc---ccchhhcCC
Confidence 344455555555544443 67778888888888888877 45 67788888888888888773 355555668
Q ss_pred CCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC-hhccCCCCCCeeeCC
Q 048635 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLS 504 (562)
Q Consensus 426 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls 504 (562)
+|++|++++|++++ ++ .+..+++|+.|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~L~~L~L~~N~l~~------------------------l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 94 TLEELWISYNQIAS------------------------LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp HCSEEEEEEEECCC------------------------HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred cCCEEECcCCcCCc------------------------CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 88888888888742 22 46677889999999999884332 468889999999999
Q ss_pred CCcccccChh----------hhcCCCCCCeEeCcCCcce
Q 048635 505 MNNLSGKIPA----------QLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 505 ~n~l~~~~p~----------~l~~l~~L~~L~l~~n~l~ 533 (562)
+|++++..|. .+..+++|++|| +|+++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9998876554 377889999887 67665
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.5e-12 Score=113.53 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT 456 (562)
Q Consensus 377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~ 456 (562)
.+.+++++|.++. +|..+ .++|++|++++|.+.+.. +..+..+++|++|++++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~------------------ 67 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLT------------------ 67 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC------------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcC------------------
Confidence 3566666666655 33322 245666666666655443 444455555555555555542
Q ss_pred hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus 68 -----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 68 -----VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 112222344455555555555555433334555555555555555544
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=1e-10 Score=116.95 Aligned_cols=320 Identities=12% Similarity=0.120 Sum_probs=206.6
Q ss_pred cccCCCC-CCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCC
Q 048635 71 FGLANLT-NLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLG 149 (562)
Q Consensus 71 ~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 149 (562)
.+|.+++ .|+.+.+..+ ++..-..+|.+|.+|+.+.+..+... .+......+|.++.+|+.+.+..+ ++.++
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~-----~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS-----CVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC-----CCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC-----eeeEechhhchhcccceeeccCCc-cceeh
Confidence 4677775 5999999764 66667788999999999998765311 122233456888888888777654 55555
Q ss_pred CccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635 150 TERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY 229 (562)
Q Consensus 150 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 229 (562)
. .++..+.+|+.+.+..+ +.... ...+..+..|+.+.+..+ ++.....+|. ...|+.+.+..
T Consensus 130 ~---~aF~~c~~L~~i~lp~~-~~~I~------------~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 130 S---EAFHHCEELDTVTIPEG-VTSVA------------DGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp T---TTTTTCTTCCEEECCTT-CCEEC------------TTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT
T ss_pred h---hhhhhhcccccccccce-eeeec------------ccceecccccccccccce-eeEecccccc-ccceeEEEECC
Confidence 4 56778889999888643 21111 123566778888888765 4434444554 46788888876
Q ss_pred CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCC-------------cCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635 230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI-------------GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296 (562)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 296 (562)
+ .......+|..+..++................+ .....+..+.+.. .++......|..+..|+.
T Consensus 192 ~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 192 K-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLAS 269 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCE
T ss_pred c-ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccE
Confidence 5 344555667777777777665544321110000 1112233444432 233334556788889999
Q ss_pred eeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCC
Q 048635 297 VDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376 (562)
Q Consensus 297 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 376 (562)
+.+.++...-....|..+++|+.+.+.. .++ .++..+|.++.+|+.+.+..+ ++.....+|.+|.+
T Consensus 270 i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 270 VKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT------------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT-TCC------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred EecccccceecCcccccccccccccCCC-ccc------------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 9887765443445667888999998863 333 677777999999999999764 55566788999999
Q ss_pred CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437 (562)
Q Consensus 377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 437 (562)
|+.+.+..+ ++.+...+|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCCCCE
Confidence 999999654 66666778999999999999887644 23456677888887766554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4.2e-12 Score=111.09 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=56.7
Q ss_pred CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhh
Q 048635 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN 457 (562)
Q Consensus 378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~ 457 (562)
+.+++++|++.. +|..+ .++|++|++++|.+.+.. +..+..+++|++|++++|+++
T Consensus 15 ~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~------------------- 70 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLT------------------- 70 (174)
T ss_dssp SEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred cEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCC-------------------
Confidence 566777776655 33333 256666666666666543 445555566666666666552
Q ss_pred CCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 458 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus 71 ----~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 71 ----AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 111222345555555566555555433334555555555555555555
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=8.5e-15 Score=131.67 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=109.4
Q ss_pred CCCCCEEEcccCCCCCcch------HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhh
Q 048635 374 CNMLQVLDFRNNHISDNFP------CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCST 447 (562)
Q Consensus 374 l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 447 (562)
...++.++++++.+.+..| ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~l~--------- 83 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNLIK--------- 83 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEEEC---------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCCcc---------
Confidence 3445555555555554444 489999999999999999886 35 7888999999999999983
Q ss_pred hhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh-hhhcCCCCCCeEe
Q 048635 448 TLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-AQLASLNFLSVLN 526 (562)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ 526 (562)
.+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 84 ---------------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 84 ---------------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp ---------------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ---------------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 345556677899999999999995 55 68899999999999999995333 4789999999999
Q ss_pred CcCCcceecCCC
Q 048635 527 LSYNNLVGQIPT 538 (562)
Q Consensus 527 l~~n~l~~~~p~ 538 (562)
+++|++.+.+|.
T Consensus 147 l~~N~l~~~~~~ 158 (198)
T 1ds9_A 147 LAGNPLYNDYKE 158 (198)
T ss_dssp ECSCHHHHHHHT
T ss_pred ecCCcccccccc
Confidence 999999887765
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.7e-14 Score=140.08 Aligned_cols=195 Identities=15% Similarity=0.125 Sum_probs=124.0
Q ss_pred CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC-CCCCCCEEEcccCCCCCcch
Q 048635 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFP 392 (562)
Q Consensus 314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~ 392 (562)
.+.|+.|++++|.++..- ...+........++|++|++++|.+++.....+. .+++|++|+|++|.+++...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHH-------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 567899999988876110 0011222112335799999999988754333332 35678999999999887544
Q ss_pred HHh-----hcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccc
Q 048635 393 CWL-----RNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT 465 (562)
Q Consensus 393 ~~l-----~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (562)
..+ ...++|++|++++|.++... .+...+..+++|++|++++|.+++.-. ..+.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-------------------~~L~ 204 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-------------------ELLA 204 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-------------------HHHH
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-------------------HHHH
Confidence 444 24678999999999886422 123344567889999999988743211 1234
Q ss_pred ccccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCCcccccChhhhcCCCC-----CCeEe--CcCCccee
Q 048635 466 EEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF-----LSVLN--LSYNNLVG 534 (562)
Q Consensus 466 ~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-----L~~L~--l~~n~l~~ 534 (562)
..+...++|++|+|++|.|++. ++..+..+++|++|+|++|.|++.....+..+.. |+.+. +..|.+..
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 4566677899999999988753 3344556788999999999888755555544321 66666 66666653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=1.3e-11 Score=107.51 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=87.2
Q ss_pred CCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh
Q 048635 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR 396 (562)
Q Consensus 317 L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 396 (562)
.+.+++++|.++ .+|.... ++++.|++++|.+++..+..|..+++|++|+|++|++++..+..|.
T Consensus 11 ~~~l~~s~n~l~------------~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLA------------SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCS------------SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcC------------ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 456666666665 5665422 5688999999999888888889999999999999999987777788
Q ss_pred cCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635 397 NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441 (562)
Q Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 441 (562)
.+++|++|++++|++.+.. +..+..+++|++|++++|++....
T Consensus 76 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCCCCEEECCCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8999999999999988655 556888899999999999986554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7.4e-14 Score=137.87 Aligned_cols=188 Identities=16% Similarity=0.108 Sum_probs=97.0
Q ss_pred CCCCeeeCcCCcccccCC-C----CC-CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc
Q 048635 292 TQLFHVDFSSNHFSGPIP-S----FH-ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365 (562)
Q Consensus 292 ~~L~~L~l~~n~~~~~~~-~----~~-~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 365 (562)
+.|++|++++|.++.... . +. ..++|++|++++|.++. .........+++|+.|++++|.+++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-----------AGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-----------HHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-----------HHHHHHHHHHHhccHhhcCCCCCCH
Confidence 456777777777654211 1 12 23567777777766541 1111112233456777777776654
Q ss_pred cCCccC-----CCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCC
Q 048635 366 VVPKSL-----ANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFAS 434 (562)
Q Consensus 366 ~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~ 434 (562)
.....+ ...++|++|+|++|.+++. ++..+..+++|++|+|++|.+.... .+...+...++|++|++++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 433332 2356677777777776542 2333455677777777777765321 1123344556677777777
Q ss_pred CcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCC---CC--CCeee--CCCCc
Q 048635 435 NKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL---KQ--IESLD--LSMNN 507 (562)
Q Consensus 435 n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l---~~--L~~L~--Ls~n~ 507 (562)
|.+++... ..+...+...++|++|+|++|.|++.....+..+ .. |+.+. +..+.
T Consensus 221 N~i~~~g~-------------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 221 NGAGDTAA-------------------LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp SCCCHHHH-------------------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred CCCCHHHH-------------------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 77642211 1223334455667777777777765444343322 11 55555 55555
Q ss_pred cc
Q 048635 508 LS 509 (562)
Q Consensus 508 l~ 509 (562)
++
T Consensus 282 ~~ 283 (372)
T 3un9_A 282 VS 283 (372)
T ss_dssp CH
T ss_pred cC
Confidence 54
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=7.2e-10 Score=110.80 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=69.1
Q ss_pred CccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhh
Q 048635 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCST 447 (562)
Q Consensus 368 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 447 (562)
..+|..+..|+.+.+.++.. ......|.++++|+.+.+. +.+.... ..++..+.+|+.+++..+ +
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~--~~aF~~c~~L~~i~lp~~-v---------- 322 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELP--ESVFAGCISLKSIDIPEG-I---------- 322 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEEC--TTTTTTCTTCCEEECCTT-C----------
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccC--ceeecCCCCcCEEEeCCc-c----------
Confidence 34455555555555543321 2223345555555555554 2233333 445555566666665432 1
Q ss_pred hhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeC
Q 048635 448 TLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL 527 (562)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 527 (562)
......+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++.++.... ..+.....|+.+.+
T Consensus 323 -------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 323 -------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp -------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred -------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 1222345677777888887544 554555678888888888888776442 45667778888877
Q ss_pred cCCcc
Q 048635 528 SYNNL 532 (562)
Q Consensus 528 ~~n~l 532 (562)
..+.+
T Consensus 386 ~~~~~ 390 (394)
T 4gt6_A 386 APGSI 390 (394)
T ss_dssp -----
T ss_pred CCCCE
Confidence 76654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2.5e-11 Score=106.11 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=84.8
Q ss_pred CEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635 318 NYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397 (562)
Q Consensus 318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 397 (562)
+.+++++|.++ .+|.... ++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..
T Consensus 15 ~~l~~~~n~l~------------~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLA------------SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCS------------SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCC------------ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 45666666554 6665522 56889999999998888888899999999999999998876667788
Q ss_pred CCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635 398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR 440 (562)
Q Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 440 (562)
+++|++|++++|.+.+.. +..+..+++|++|++++|++...
T Consensus 80 l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIP--RGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCBCTT
T ss_pred cchhhEEECCCCccceeC--HHHhccccCCCEEEeCCCCcccc
Confidence 999999999999988654 45588899999999999998643
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.9e-08 Score=99.93 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred ccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635 468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 528 (562)
Q Consensus 468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 528 (562)
+..+++|+.+.+.++.++.....+|.+|++|+.+.|..+ ++.....+|.++++|+++++.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 444555555555555554333445555555555555432 443334455555555555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.4e-10 Score=111.21 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=78.0
Q ss_pred CEEEcccC-CCCCcchHHhhcCCCCCEEEccC-cccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhh
Q 048635 378 QVLDFRNN-HISDNFPCWLRNASSLQVLVLRS-NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455 (562)
Q Consensus 378 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~ 455 (562)
..++.+++ .++. +|. +..+++|++|+|++ |.+.+.. +..+..+++|++|+|++|+++
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~----------------- 69 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLR----------------- 69 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCC-----------------
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccc-----------------
Confidence 35677777 7777 566 88888888888886 8887765 566778888888888888873
Q ss_pred hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635 456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 456 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
+..+..|..+++|+.|+|++|.+++..+..|..++ |+.|+|++|.+..
T Consensus 70 ------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 70 ------FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ------EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ------eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 44455677788888888888888865555566555 8888888888763
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=2e-09 Score=105.66 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=63.0
Q ss_pred cCCccccCCCCCcCEEECcC-CcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCC
Q 048635 341 TLSDIIFPRNCGLHILDLSG-NQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPR 419 (562)
Q Consensus 341 ~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 419 (562)
.+|. +..+.+|+.|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+.. +.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~ 98 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS--WK 98 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC--ST
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC--HH
Confidence 4555 55666677777775 6776666666777777777777777777766666777777777777777776443 33
Q ss_pred CCCCCCCCCEEEcCCCcCCCcC
Q 048635 420 NNVSWPLLQIVDFASNKFGGRL 441 (562)
Q Consensus 420 ~~~~~~~L~~L~l~~n~~~~~~ 441 (562)
.+..++ |+.|++.+|++....
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCCG
T ss_pred HcccCC-ceEEEeeCCCccCCC
Confidence 333333 777777777775443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=9e-08 Score=95.04 Aligned_cols=317 Identities=9% Similarity=0.074 Sum_probs=163.7
Q ss_pred ccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCC
Q 048635 127 NFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQC 206 (562)
Q Consensus 127 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~ 206 (562)
.++....+|+.+.+.. .++.++. .++.+|.+|+.+++..+ ++.....+ +.++ +|+.+.+..+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~---~aF~~C~~L~~I~lp~~-v~~Ig~~a------------F~~c-~l~~i~~~~~ 101 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGE---ANFNSCYNMTKVTVAST-VTSIGDGA------------FADT-KLQSYTGMER 101 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECT---TTTTTCTTCCEEEECTT-CCEECTTT------------TTTC-CCCEEEECTT
T ss_pred cccccccCCEEEEeCC-CccChHH---HHhhCCCCCCEEEeCCc-ceEechhh------------hcCC-CCceEECCce
Confidence 3456667788877764 3677775 57788888998888643 33332222 2333 4666655433
Q ss_pred cCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635 207 DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPT 286 (562)
Q Consensus 207 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 286 (562)
++.....+|.. .+|+.+.+..+ +.......|... +++.+.+..+ ++......+..+..++.+.+..+........
T Consensus 102 -l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~ 176 (379)
T 4h09_A 102 -VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN 176 (379)
T ss_dssp -CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET
T ss_pred -eeEeccceecc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc
Confidence 33233344443 46777777654 233333334332 4555544332 2223334455566666665544322110000
Q ss_pred cCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc
Q 048635 287 STTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366 (562)
Q Consensus 287 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 366 (562)
......... ....+.....+..+.+..... .+....+.....++.+.+..+ +...
T Consensus 177 -~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~f~~~~~l~~i~~~~~-~~~i 231 (379)
T 4h09_A 177 -YVLYNKNKT----------ILESYPAAKTGTEFTIPSTVK-------------TVTAYGFSYGKNLKKITITSG-VTTL 231 (379)
T ss_dssp -TEEEETTSS----------EEEECCTTCCCSEEECCTTCC-------------EECTTTTTTCSSCSEEECCTT-CCEE
T ss_pred -ceecccccc----------eecccccccccccccccccee-------------EEeecccccccccceeeeccc-eeEE
Confidence 000000000 000112223333333322211 222233555556666666543 3334
Q ss_pred CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS 446 (562)
Q Consensus 367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 446 (562)
...++..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +.... ...+..+++|+.+.+.++.+.
T Consensus 232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~--~~aF~~c~~L~~i~l~~~~i~-------- 299 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP--YLLCSGCSNLTKVVMDNSAIE-------- 299 (379)
T ss_dssp CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC--TTTTTTCTTCCEEEECCTTCC--------
T ss_pred ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc--ccccccccccccccccccccc--------
Confidence 4556666777777777654 44444455666777777776543 33333 455666777777777665541
Q ss_pred hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 520 (562)
Q Consensus 447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 520 (562)
.....+|.++++|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++.....+|.++.
T Consensus 300 ---------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 300 ---------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ---------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ---------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 223345677777888887644 55344567888888888887654 5544555666553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=2.5e-09 Score=104.50 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=107.7
Q ss_pred cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh--cCCCCCEEEccC--cccceec---CCCC
Q 048635 347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR--NASSLQVLVLRS--NNFSGHI---SYPR 419 (562)
Q Consensus 347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~~---~~~~ 419 (562)
+..+++|+.|.+++|.-. .++. + .+++|++|+|..|.+.......+. .+|+|+.|+|+. |...+.. .+..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 566778999999887311 2222 3 378999999999988765544554 689999999853 2211110 1111
Q ss_pred CC--CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccC----cChhcc
Q 048635 420 NN--VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS----IPSSFG 493 (562)
Q Consensus 420 ~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~ 493 (562)
.+ ..+|+|++|++.+|.+.+..+..+ .....+++|++|+|+.|.+++. ++..+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~l--------------------a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMF--------------------LESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHH--------------------HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHH--------------------HhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 12 357999999999998853222111 0113468999999999999864 344456
Q ss_pred CCCCCCeeeCCCCcccccChhhhcC-CCCCCeEeCcCCc
Q 048635 494 NLKQIESLDLSMNNLSGKIPAQLAS-LNFLSVLNLSYNN 531 (562)
Q Consensus 494 ~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~ 531 (562)
.+++|+.|++++|.+++.....+.. + ..++++++++
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7899999999999988655555554 3 4778999887
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.6e-09 Score=105.93 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=98.0
Q ss_pred CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC--CCCCCCCEEEcCCC--cCCCcCC
Q 048635 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN--VSWPLLQIVDFASN--KFGGRLS 442 (562)
Q Consensus 367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~l~~n--~~~~~~~ 442 (562)
+...+..+++|++|++++|.-.. .+. + .+++|++|++..|.+.... ...+ ..+|+|+.|+|+.+ ...+...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~--l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSV--VEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHH--HHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHH--HHHHHHccCCCCcEEEEeccccccccchh
Confidence 33455678999999999883222 222 3 3789999999988876432 1222 36899999998642 2111100
Q ss_pred hhhhhhhhhhhhhhhCCCcccccccc--cCcCCCCEEeCcCCcCccCcChhcc---CCCCCCeeeCCCCccccc----Ch
Q 048635 443 QKCSTTLGMRYQATNKRCRDQATEEM--GRFKSLYALNMSHNALTGSIPSSFG---NLKQIESLDLSMNNLSGK----IP 513 (562)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~l--~~l~~L~~L~Ls~n~i~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~p 513 (562)
...+...+ ..+|+|+.|++++|.+.+..+..+. .+++|++|+|+.|.+++. ++
T Consensus 239 ------------------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 239 ------------------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp ------------------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred ------------------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 00111112 3578999999999999865444443 588999999999999874 34
Q ss_pred hhhcCCCCCCeEeCcCCccee
Q 048635 514 AQLASLNFLSVLNLSYNNLVG 534 (562)
Q Consensus 514 ~~l~~l~~L~~L~l~~n~l~~ 534 (562)
..+..+++|+.|++++|.++.
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCH
T ss_pred hhcccCCcceEEECCCCcCCH
Confidence 445667999999999998863
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=4.5e-09 Score=92.69 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=44.1
Q ss_pred cccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeC--CCCccccc----ChhhhcCCCCCCeEeCcCCcce
Q 048635 467 EMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDL--SMNNLSGK----IPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 467 ~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
.+...++|++|+|++|.|++. +...+...+.|++|+| ++|.+.+. +.+.+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344456677777777777643 3455666677777777 67777653 3345556677888888888765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.6e-08 Score=89.03 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=67.9
Q ss_pred cCCCCCCCCEEEcccC-CCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635 370 SLANCNMLQVLDFRNN-HISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLS 442 (562)
Q Consensus 370 ~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~ 442 (562)
.+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+.... .+...+...+.|++|+|++|.+++.-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 55432 2223344455566666655554211 112223334556666666666632211
Q ss_pred hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC--cCCcCccC----cChhccCCCCCCeeeCCCCcccc
Q 048635 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM--SHNALTGS----IPSSFGNLKQIESLDLSMNNLSG 510 (562)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L--s~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~ 510 (562)
..+...+...++|++|+| ++|.+++. +.+.+...+.|++|+|++|.+..
T Consensus 111 -------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 -------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp -------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred -------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 123345566678888888 77888754 33455666888889988888763
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=2.1e-07 Score=79.71 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCC----CCC
Q 048635 424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL----KQI 498 (562)
Q Consensus 424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l----~~L 498 (562)
-..|++||+++|.++ ......+..+++|+.|+|++|. +++..-..+..+ ++|
T Consensus 60 ~~~L~~LDLs~~~It-----------------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM-----------------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp CCCEEEEEEESCCCC-----------------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred CceEeEEeCcCCCcc-----------------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence 357899999998873 3344557789999999999995 887655666664 479
Q ss_pred CeeeCCCCc-ccccChhhhcCCCCCCeEeCcCCc
Q 048635 499 ESLDLSMNN-LSGKIPAQLASLNFLSVLNLSYNN 531 (562)
Q Consensus 499 ~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~n~ 531 (562)
++|+|++|. +++..-..+..+++|++|++++|+
T Consensus 117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 999999985 888777778899999999999996
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=2e-06 Score=79.43 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccCcCCCCEEeCcCCcCccCcChhccCCC--CCCeeeCCCCcccccCh-------hhhcCCCCCCeEe
Q 048635 468 MGRFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIP-------AQLASLNFLSVLN 526 (562)
Q Consensus 468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p-------~~l~~l~~L~~L~ 526 (562)
+..+++|+.|+|++|.|++. ..+..++ +|++|+|++|.+.+..| ..+..+++|+.||
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34455555555555555532 1223333 55555555555554333 2344555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.7e-06 Score=80.04 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=56.9
Q ss_pred cCcCCCCEEeCcCCcCcc--CcChhccCCCCCCeeeCCCCcccccChhhhcCCC--CCCeEeCcCCcceecCCC
Q 048635 469 GRFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN--FLSVLNLSYNNLVGQIPT 538 (562)
Q Consensus 469 ~~l~~L~~L~Ls~n~i~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~ 538 (562)
..+++|++|+|++|.+++ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 467899999999999997 4457778999999999999999964 3344454 999999999999987763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=7.9e-07 Score=76.11 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=65.1
Q ss_pred CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcchHHhhcC----CCCCEEEccCcc-cceecCCCCCCCCC
Q 048635 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNFPCWLRNA----SSLQVLVLRSNN-FSGHISYPRNNVSW 424 (562)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 424 (562)
..|+.|++++|.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|++++|. ++... ...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhcC
Confidence 368889999988887766777889999999999985 777555566654 479999999885 66433 3445678
Q ss_pred CCCCEEEcCCCcC
Q 048635 425 PLLQIVDFASNKF 437 (562)
Q Consensus 425 ~~L~~L~l~~n~~ 437 (562)
++|++|++++|+-
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999998863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=3.1e-05 Score=67.58 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=37.8
Q ss_pred ccccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCC---cccc----cChhhhcCCCCCCeEeCcCCcce
Q 048635 466 EEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMN---NLSG----KIPAQLASLNFLSVLNLSYNNLV 533 (562)
Q Consensus 466 ~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n---~l~~----~~p~~l~~l~~L~~L~l~~n~l~ 533 (562)
+.+..-+.|++|+|++|.|.+. +.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|++|+++.|.+.
T Consensus 92 ~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3344445666666666666533 2334445556777777654 2232 23445556667777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=4.4e-05 Score=66.57 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=26.1
Q ss_pred ccccCcCCCCEEeCcCC---cCcc----CcChhccCCCCCCeeeCCCCccc
Q 048635 466 EEMGRFKSLYALNMSHN---ALTG----SIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 466 ~~l~~l~~L~~L~Ls~n---~i~~----~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
+.+..-+.|++|+|++| .+.+ .+.+.+..-+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33444566777777754 3332 13345566677888888776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.00098 Score=54.17 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=17.9
Q ss_pred CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635 497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532 (562)
Q Consensus 497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 532 (562)
+|+.|+|++|+|+...+..|..+++|++|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555543344444455555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.33 E-value=0.0075 Score=48.85 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509 (562)
Q Consensus 472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~ 509 (562)
++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47999999999999777778999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.69 E-value=9.4 Score=28.64 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=19.9
Q ss_pred cCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccC
Q 048635 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408 (562)
Q Consensus 366 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 408 (562)
....+|.+|.+|+.+.|-.+ ++.+....|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444555555555555433 3333334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.52 E-value=32 Score=25.67 Aligned_cols=42 Identities=12% Similarity=-0.004 Sum_probs=21.3
Q ss_pred cCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccC
Q 048635 211 KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253 (562)
Q Consensus 211 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~ 253 (562)
....+|.++.+|+.+.+..+ +......+|..+.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555556665555544 3444444555555555555543
Done!