BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048636
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 104/130 (80%), Gaps = 8/130 (6%)
Query: 21 SIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH 80
+++ REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D
Sbjct: 16 TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDL 67
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIE 140
Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG + FIWEFNFRDFDVA DAHAPDSIE
Sbjct: 68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIE 127
Query: 141 LLRLQGIDFE 150
LLR QGIDFE
Sbjct: 128 LLRRQGIDFE 137
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 13 SSNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYF 72
S + S+ I+IR+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D
Sbjct: 3 KSEADLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDV-----L 57
Query: 73 RQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATD 132
R+ P+ Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG N ++IWEFNFRDFDV D
Sbjct: 58 RRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERD 117
Query: 133 AHAPDSIELLRLQGIDFE 150
HAPDSIELLR GIDFE
Sbjct: 118 PHAPDSIELLRRHGIDFE 135
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 10/131 (7%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
+SI IREVW NLESE LI +V+D +PF++MDTEFPG+V RP T +
Sbjct: 8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY------- 60
Query: 80 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDS 138
HY+ LK+NV+ L +IQ+GLT SD GNLP G+ +NK+ IW+FNFR+FD+ +D +A DS
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDS 118
Query: 139 IELLRLQGIDF 149
IELLR GIDF
Sbjct: 119 IELLRQSGIDF 129
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 94/138 (68%), Gaps = 11/138 (7%)
Query: 14 SNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFR 73
+ + +SI+IREVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y
Sbjct: 2 AETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKY-- 56
Query: 74 QRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATD 132
+Y+ LK NVD L LIQVGLT SD +GNLP G+ +KF IW+FNFR+F++ D
Sbjct: 57 --NNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGED 111
Query: 133 AHAPDSIELLRLQGIDFE 150
+A +SIELLR GIDF+
Sbjct: 112 IYASESIELLRQCGIDFK 129
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 13/136 (9%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPS 78
++I IREVW NLE E LI Q ID +P+++MDTEFPG+V + +P+ PY S
Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPY------S 65
Query: 79 DHYK----VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAH 134
HY+ LK+NV+ L LIQ+GLTLSD GNLP G+ N + IW+FNFR+F+V +D
Sbjct: 66 IHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMF 123
Query: 135 APDSIELLRLQGIDFE 150
A DSIELLR ID E
Sbjct: 124 ALDSIELLRKSAIDLE 139
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 11/131 (8%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPS 78
+SI IREVW NL+ E +LI V+D +P+++MDTEFPG+V RP S Y
Sbjct: 8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY------- 60
Query: 79 DHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDS 138
HY+ LK+NV+ L +IQ+GLT S+ GNLP G+ + IW+FNFR+FD+ +D A DS
Sbjct: 61 -HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDS 117
Query: 139 IELLRLQGIDF 149
IELL+ GID
Sbjct: 118 IELLKQSGIDL 128
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYK 82
IR+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP V S+ Y HY+
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQ 76
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
L++NVD+L +IQ+GL LSD GN P W+FNF F++ D +AP+SIELL
Sbjct: 77 TLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNFT-FNLQDDMYAPESIELL 129
Query: 143 RLQGIDFE 150
GIDF+
Sbjct: 130 TKSGIDFK 137
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%), Gaps = 13/131 (9%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
N + +R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K
Sbjct: 156 NYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FR-SKVDY 208
Query: 80 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSI 139
HY+ +++NVD LN IQ+GL+LSD++GN PD G W+FNF +FD + + +S+
Sbjct: 209 HYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS-----TWQFNF-EFDPKKEIMSTESL 262
Query: 140 ELLRLQGIDFE 150
ELLR GI+FE
Sbjct: 263 ELLRKSGINFE 273
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TTSGIQFK 124
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TTSGIQFK 124
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TTSGIQFK 124
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TTSGIQFK 124
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 16/132 (12%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
NS +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D
Sbjct: 8 NSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSID 59
Query: 80 H-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDS 138
+ Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DS
Sbjct: 60 YQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDS 112
Query: 139 IELLRLQGIDFE 150
I+LL G+ F+
Sbjct: 113 IDLLANSGLQFQ 124
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 16/132 (12%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
NS +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D
Sbjct: 8 NSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSID 59
Query: 80 H-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDS 138
+ Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DS
Sbjct: 60 YQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDS 112
Query: 139 IELLRLQGIDFE 150
I+LL G+ F+
Sbjct: 113 IDLLANSGLQFQ 124
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NLE E + I QV ++ +I+MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TSSGIQFK 124
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ + + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TSSGIQFK 124
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ + + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFE 150
GI F+
Sbjct: 117 TSSGIQFK 124
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 14/128 (10%)
Query: 22 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHY 81
+ I V+ SN+E EF I ++ YP+++MDTEFPG+V P FR ++ ++
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQ 74
Query: 82 KVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEL 141
+V NV+ L LIQVG + + G LP G +W+FNF +F A D + +S+E+
Sbjct: 75 QVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEM 126
Query: 142 LRLQGIDF 149
LR GIDF
Sbjct: 127 LRQAGIDF 134
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 18/128 (14%)
Query: 23 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYK 82
+ R VW SN++ E +++ + R+P I+ DTE+PG+++R D S+ + Y+
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYR 58
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELL 142
+K NV+ LIQ G TL ++ G + GG +WE NF +F +D SIE L
Sbjct: 59 AMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFL 109
Query: 143 RLQGIDFE 150
R G+D +
Sbjct: 110 RRHGLDLQ 117
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 38 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVG 97
LI + Y FI++DTEFP + R + + Y + +VD LIQ+G
Sbjct: 3 LIEDCLRSYRFIAIDTEFP---------STLRETTQHATDEERYMDMSFSVDRAKLIQLG 53
Query: 98 LTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDF 149
LTL D +G + GG WE NF DF V DA SIE LR G+D
Sbjct: 54 LTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDL 95
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N E E + I + + I++DTEFPG + +D S +R +K
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRD---------MK 53
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQ 145
NVD +LIQ+G TL D G WE N DF+ SI L+
Sbjct: 54 FNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSN 103
Query: 146 GIDFE 150
G++ +
Sbjct: 104 GLNLD 108
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N E E I + I++DTEFPG + +D S +R +K
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRD---------MK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQ 145
NVD +LIQ+G TL D G WE N DFD SI L+
Sbjct: 59 FNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSN 108
Query: 146 GIDFE 150
G++ +
Sbjct: 109 GLNLD 113
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N ++E I + I++DTEFPG + +D S +R +K
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD---------MK 54
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQ 145
NVD +LIQ+GLTL G G WE N DF+ + SI L+
Sbjct: 55 FNVDNTHLIQLGLTL---------FGKGITK--TWEINLSDFNESKSLKNDKSIAFLKNN 103
Query: 146 GIDFE 150
G+D +
Sbjct: 104 GLDLD 108
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN +S + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDVATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + +PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDF 149
SI+ L QG DF
Sbjct: 111 SSIDFLASQGFDF 123
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN +S + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDVATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + +PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDF 149
SI+ L QG DF
Sbjct: 111 SSIDFLASQGFDF 123
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDVATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSPPDVKFVCQS 110
Query: 138 -SIELLRLQGIDF 149
SI+ L QG DF
Sbjct: 111 SSIDFLASQGFDF 123
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + + I+ F+++D EF G+ P V T + P + Y LK
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGF---DTPEERYTKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDVATDAHAPD------- 137
+ L Q GL + K++ + FNF F + ++PD
Sbjct: 59 KHSMEFLLFQFGLCTFNYDNT--------EAKYLMKSFNFYIFPKPFNRNSPDKKFVCQS 110
Query: 138 -SIELLRLQGIDF 149
SI+ L QG DF
Sbjct: 111 SSIDFLANQGFDF 123
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDVATDAHAPD------- 137
+ L Q GL ++K + + FNF F +PD
Sbjct: 59 KHSMDFLLFQFGLCAFKYDHT--------DSKHVTKSFNFYVFPKPFSRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDF 149
SI+ L QG DF
Sbjct: 111 SSIDFLASQGFDF 123
>sp|Q941B6|UBC37_ARATH Probable ubiquitin-conjugating enzyme E2 37 OS=Arabidopsis
thaliana GN=UBC37 PE=2 SV=2
Length = 409
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 2 GAGDFST--DLDSSSNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLV 59
G+GDFST +D+ V+A+ + F L Q+ +RYPF F +
Sbjct: 37 GSGDFSTFSTIDAQIEGPEDT------VYANGI---FNLKIQIPERYPFQPPIVSFATPI 87
Query: 60 YRPDVDPSTR 69
Y P++D S R
Sbjct: 88 YHPNIDNSGR 97
>sp|B7VPD7|COBT_VIBSL Nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase OS=Vibrio splendidus (strain
LGP32) GN=cobT PE=3 SV=1
Length = 342
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 64 VDPSTRPY--FRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSG 105
++PS R Y F R +K+L +DA L+ +GL L + +G
Sbjct: 271 IEPSCRDYMIFAHRSEESGHKILLELLDAEPLLDLGLRLGEGTG 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,463,728
Number of Sequences: 539616
Number of extensions: 2329295
Number of successful extensions: 6271
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6204
Number of HSP's gapped (non-prelim): 36
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)