Query 048636
Match_columns 150
No_of_seqs 115 out of 445
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uoc_A POP2; hydrolase, DEDD n 100.0 8.9E-43 3E-47 289.4 10.5 119 19-150 11-129 (289)
2 2d5r_A CCR4-NOT transcription 100.0 2.9E-42 1E-46 281.7 10.7 114 23-150 1-114 (252)
3 2p51_A SPCC18.06C protein; DED 100.0 5E-42 1.7E-46 289.1 12.0 120 17-150 16-135 (333)
4 4gmj_B CCR4-NOT transcription 100.0 7.1E-42 2.4E-46 283.6 10.8 117 20-150 8-124 (285)
5 3d45_A Poly(A)-specific ribonu 100.0 9.8E-37 3.4E-41 268.8 8.7 117 24-150 2-126 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 1.1E-34 3.9E-39 251.4 7.7 116 25-150 1-124 (430)
7 2f96_A Ribonuclease T; RNAse, 93.7 0.1 3.5E-06 40.0 5.4 53 39-128 22-76 (224)
8 3v9w_A Ribonuclease T; DEDD nu 92.6 0.19 6.3E-06 38.8 5.4 57 35-128 26-84 (235)
9 2igi_A Oligoribonuclease; RNAs 89.7 0.53 1.8E-05 34.5 5.1 46 45-128 4-49 (180)
10 1w0h_A 3'-5' exonuclease ERI1; 87.8 1.8 6.2E-05 32.1 7.0 48 47-129 11-59 (204)
11 2p1j_A POLIII, DNA polymerase 87.3 0.63 2.1E-05 34.6 4.2 17 43-59 9-25 (186)
12 2qxf_A Exodeoxyribonuclease I; 86.2 0.69 2.4E-05 40.3 4.4 36 43-106 6-41 (482)
13 1zbh_A 3'-5' exonuclease ERI1; 83.3 3.4 0.00012 33.1 7.1 49 46-129 78-127 (299)
14 2xri_A ERI1 exoribonuclease 3; 82.9 3 0.0001 31.8 6.3 46 47-129 32-78 (224)
15 1zbu_A ERI-1 homolog, 3'-5' ex 77.1 4.4 0.00015 33.5 5.9 49 46-129 128-177 (349)
16 3tr8_A Oligoribonuclease; tran 75.6 2.3 8E-05 32.1 3.5 16 44-59 7-22 (186)
17 3cg7_A CRN-4, cell death-relat 72.0 6.9 0.00023 31.6 5.7 35 47-106 20-55 (308)
18 2gbz_A Oligoribonuclease; ORN, 70.6 2.8 9.7E-05 31.2 2.9 16 44-59 7-22 (194)
19 1y97_A Three prime repair exon 68.6 2.5 8.6E-05 32.2 2.2 31 46-104 10-40 (238)
20 2gui_A DNA polymerase III epsi 65.3 3.3 0.00011 30.5 2.2 14 46-59 9-22 (194)
21 3mxm_B Three prime repair exon 64.3 3.4 0.00012 32.1 2.2 30 47-104 13-42 (242)
22 3u3y_B Three prime repair exon 53.3 6.6 0.00022 32.3 2.2 30 47-104 13-42 (314)
23 2e6m_A Werner syndrome ATP-dep 51.2 13 0.00044 27.5 3.5 49 10-58 4-52 (208)
24 1wlj_A Interferon stimulated g 49.2 3.8 0.00013 30.3 0.1 15 45-59 4-18 (189)
25 4g3h_A Arginase (ROCF); rossma 43.8 33 0.0011 27.9 5.1 66 29-103 209-284 (330)
26 2kfn_A Klenow fragment of DNA 42.4 16 0.00056 32.1 3.2 27 33-59 13-39 (605)
27 3saf_A Exosome component 10; e 33.0 23 0.00077 30.2 2.5 25 34-58 117-141 (428)
28 2cev_A Protein (arginase); enz 29.3 70 0.0024 25.2 4.7 64 30-102 201-273 (299)
29 1yt3_A Ribonuclease D, RNAse D 29.1 38 0.0013 27.7 3.2 26 33-58 9-34 (375)
30 1xfk_A Formimidoylglutamase; f 28.9 87 0.003 25.3 5.3 68 25-101 225-301 (336)
31 1vk0_A Hypothetical protein; h 27.9 28 0.00097 26.4 2.0 29 28-56 26-56 (206)
32 3m1r_A Formimidoylglutamase; s 26.3 73 0.0025 25.7 4.4 68 26-102 216-292 (322)
33 2ef5_A Arginase; TTHA1496, str 24.6 74 0.0025 25.0 4.0 68 27-103 191-265 (290)
34 4h89_A GCN5-related N-acetyltr 24.4 99 0.0034 21.1 4.3 30 17-46 4-33 (173)
35 3h4q_A Putative acetyltransfer 21.7 63 0.0021 22.0 2.8 37 7-43 3-40 (188)
36 2hbj_A Exosome complex exonucl 20.8 52 0.0018 27.5 2.5 26 33-58 93-118 (410)
No 1
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=8.9e-43 Score=289.40 Aligned_cols=119 Identities=45% Similarity=0.796 Sum_probs=103.0
Q ss_pred CCCceEEEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeee
Q 048636 19 SNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGL 98 (150)
Q Consensus 19 ~~~~~v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGl 98 (150)
++.++|||||++||++||+.|+++|++|+||||||||||++.+|. +.+++ ++++||+++|+||+.++|||+||
T Consensus 11 ~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~-----g~f~~--~~d~~Yq~lr~nVd~l~iIQlGL 83 (289)
T 1uoc_A 11 PNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPI-----GTFRS--KVDYHYQTMRANVDFLNPIQLGL 83 (289)
T ss_dssp GGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC---------------C--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCC-----cccCC--CHHHHHHHHHHhhhhccceEEEE
Confidence 446999999999999999999999999999999999999999987 66765 57999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCeeEEEEeccccCCCCCCcchhHHHHHHHcCCCCC
Q 048636 99 TLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 99 t~f~~~g~~p~~g~~~~~~~~~~FNF~~F~~~~d~~~~sSi~FL~~~GfDFn 150 (150)
|+|+++|+.|.. ++++|||||+ |+..+|+|+++||+||++||||||
T Consensus 84 t~~~~~g~~p~~-----~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~ 129 (289)
T 1uoc_A 84 SLSDANGNKPDN-----GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFE 129 (289)
T ss_dssp EEECTTCCCCSS-----SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHH
T ss_pred EEEccCCCcCCC-----CcceEEEEEE-ECCccccccHHHHHHHHHcCCChh
Confidence 999999998743 5899999999 999999999999999999999996
No 2
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=2.9e-42 Score=281.65 Aligned_cols=114 Identities=46% Similarity=0.830 Sum_probs=107.6
Q ss_pred eEEEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeec
Q 048636 23 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSD 102 (150)
Q Consensus 23 ~v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~ 102 (150)
.|||||++||++||+.|+++|++|+||||||||||++.+|. +.+++ ++++||+++|+||+.++|||+|||+|+
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~-----g~f~~--~~~~~Y~~lr~nVd~l~iIQlGlt~~~ 73 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPI-----GEFRS--NADYQYQLLRCNVDLLKIIQLGLTFMN 73 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC-----SCCSS--HHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccC-----CCCCC--CHHHHHHHHHHhhhhcceeEEEEEEEc
Confidence 48999999999999999999999999999999999999886 67775 689999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeeEEEEeccccCCCCCCcchhHHHHHHHcCCCCC
Q 048636 103 SSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 103 ~~g~~p~~g~~~~~~~~~~FNF~~F~~~~d~~~~sSi~FL~~~GfDFn 150 (150)
++|+.|. .+++|||||+ |+..+|+|+++||+||++||||||
T Consensus 74 ~~g~~p~------~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~ 114 (252)
T 2d5r_A 74 EQGEYPP------GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 114 (252)
T ss_dssp TTSCCCS------SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHH
T ss_pred cCCCCCC------CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChh
Confidence 9999873 4899999999 999999999999999999999996
No 3
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=5e-42 Score=289.06 Aligned_cols=120 Identities=50% Similarity=0.877 Sum_probs=111.3
Q ss_pred CCCCCceEEEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeee
Q 048636 17 SSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQV 96 (150)
Q Consensus 17 ~~~~~~~v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQl 96 (150)
.+.+.+.|||||++||++||+.|+++|++|+||||||||||++.+|. +.+++ ++++||+++|+||+.++||||
T Consensus 16 ~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~-----g~f~~--~~e~~Yq~lR~NVd~l~iIQl 88 (333)
T 2p51_A 16 ISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPL-----GVFKS--SDDYHYQTLRANVDSLKIIQI 88 (333)
T ss_dssp --CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCC-----SCCSS--SHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccc-----cccCC--CHHHHHHHHHHhhhhccceEE
Confidence 45567899999999999999999999999999999999999999987 67876 579999999999999999999
Q ss_pred eeeeecCCCCCCCCCCCCCCeeEEEEeccccCCCCCCcchhHHHHHHHcCCCCC
Q 048636 97 GLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 97 Glt~f~~~g~~p~~g~~~~~~~~~~FNF~~F~~~~d~~~~sSi~FL~~~GfDFn 150 (150)
|||+|+++|+.|. .+++|||||+ |+..+|+|+++||+||++||||||
T Consensus 89 GLt~fd~~G~~p~------~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~ 135 (333)
T 2p51_A 89 GLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFK 135 (333)
T ss_dssp EEEEECTTSCCCT------TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHH
T ss_pred EEEEEccCCCCCC------CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChh
Confidence 9999999999873 4899999999 999999999999999999999996
No 4
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=283.59 Aligned_cols=117 Identities=45% Similarity=0.813 Sum_probs=108.3
Q ss_pred CCceEEEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeee
Q 048636 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLT 99 (150)
Q Consensus 20 ~~~~v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt 99 (150)
....|||||++||++||+.|+++|++|+||||||||||++.+|. +.+.+ ++++||+++|.||+.++|||+|||
T Consensus 8 ~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~-----~~~~~--t~d~~Y~~lr~nvd~l~iIQlGLt 80 (285)
T 4gmj_B 8 HSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPI-----GEFRS--NADYQYQLLRCNVDLLKIIQLGLT 80 (285)
T ss_dssp --CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCT-----TCCTT--STTHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCC-----CccCC--CHHHHHHHHHHHHHhhcceeEEEE
Confidence 35689999999999999999999999999999999999999987 56655 689999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCeeEEEEeccccCCCCCCcchhHHHHHHHcCCCCC
Q 048636 100 LSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 100 ~f~~~g~~p~~g~~~~~~~~~~FNF~~F~~~~d~~~~sSi~FL~~~GfDFn 150 (150)
+|+++|+.|. .+++|||||+ |+..+|+|+++||+||++||||||
T Consensus 81 ~f~~~g~~p~------~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~ 124 (285)
T 4gmj_B 81 FMNEQGEYPP------GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124 (285)
T ss_dssp EECTTSCCCS------SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHH
T ss_pred eeccCCCcCC------CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHH
Confidence 9999999873 4899999999 999999999999999999999996
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.8e-37 Score=268.84 Aligned_cols=117 Identities=28% Similarity=0.414 Sum_probs=100.8
Q ss_pred EEEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC
Q 048636 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS 103 (150)
Q Consensus 24 v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~ 103 (150)
|+|||++||+++|+.|+++|++|+||||||||||+..++........++ ++++||+++|.||+.++|||+|||+|++
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~---t~~~~Y~~~r~~v~~~~iiQlGlt~f~~ 78 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFD---TPEERYQKLKKHSMDFLLFQFGLCAFKY 78 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSC---CHHHHHHHHHHHHTTBCEEEEEEEEEEE
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccC---CHHHHHHHHHHHHHhcccceEEEEEEec
Confidence 6899999999999999999999999999999999988775200001144 6899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeeEEEEeccccCC-----CCC---CcchhHHHHHHHcCCCCC
Q 048636 104 SGNLPDLGSGGNNKFIWEFNFRDFDV-----ATD---AHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 104 ~g~~p~~g~~~~~~~~~~FNF~~F~~-----~~d---~~~~sSi~FL~~~GfDFn 150 (150)
+|+.+ +|++|||||++||. ..| +|+++||+||++||||||
T Consensus 79 ~~~~~-------~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFn 126 (507)
T 3d45_A 79 DHTDS-------KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFN 126 (507)
T ss_dssp CSSSS-------CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHH
T ss_pred CCCCC-------ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChh
Confidence 99865 69999999999997 445 999999999999999996
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=1.1e-34 Score=251.40 Aligned_cols=116 Identities=28% Similarity=0.398 Sum_probs=101.1
Q ss_pred EEecccCHHHHHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCC
Q 048636 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS 104 (150)
Q Consensus 25 ~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~ 104 (150)
.|||++||++.|+.|+++|++|+||||||||||+..+|......+.++ ++++||+++|.||+.++|||+|||+|+++
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~---s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~ 77 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFD---TPEERYQKLKKHSMDFLLFQFGLCTFKYD 77 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCC---CHHHHHHHHHHHTTTBCEEEEEEEEEEEE
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCC---CHHHHHHHHHHHHhhcceeeEEEEEEeec
Confidence 389999999999999999999999999999999998875211113455 68999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeEEEEeccccCCC--------CCCcchhHHHHHHHcCCCCC
Q 048636 105 GNLPDLGSGGNNKFIWEFNFRDFDVA--------TDAHAPDSIELLRLQGIDFE 150 (150)
Q Consensus 105 g~~p~~g~~~~~~~~~~FNF~~F~~~--------~d~~~~sSi~FL~~~GfDFn 150 (150)
|+.+ +|++|||||++||.. .++|+++||+||++||||||
T Consensus 78 ~~~~-------~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFn 124 (430)
T 2a1r_A 78 YTDS-------KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFN 124 (430)
T ss_dssp TTTT-------EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHH
T ss_pred CCCC-------ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChh
Confidence 9865 699999999999642 35899999999999999996
No 7
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=93.67 E-value=0.1 Score=40.05 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC--CCCCCCCCCCCCC
Q 048636 39 ISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS--SGNLPDLGSGGNN 116 (150)
Q Consensus 39 I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~--~g~~p~~g~~~~~ 116 (150)
+.+-+++..||+||+|.+|+.... -.|||+|+..++. +|+.
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~~----------------------------~~IieIg~v~~~~~~~g~i--------- 64 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSAT----------------------------DALLEIAATTVGMDEKGFL--------- 64 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTTT----------------------------BCEEEEEEEEEEECTTSCE---------
T ss_pred hhccccCCcEEEEEeeCCCCCCCC----------------------------CeeEEEEEEEEEEcCCCcc---------
Confidence 355678889999999999974110 1399999999874 4541
Q ss_pred eeEEEEeccccC
Q 048636 117 KFIWEFNFRDFD 128 (150)
Q Consensus 117 ~~~~~FNF~~F~ 128 (150)
.....|+.++-|
T Consensus 65 ~~~~~f~~lV~P 76 (224)
T 2f96_A 65 FPEHTYFFRIEP 76 (224)
T ss_dssp EEEEEEEEEBCC
T ss_pred cccceEEEEECC
Confidence 245667777555
No 8
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=92.61 E-value=0.19 Score=38.80 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC--CCCCCCCCC
Q 048636 35 EFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS--SGNLPDLGS 112 (150)
Q Consensus 35 el~~I~~~i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~--~g~~p~~g~ 112 (150)
++..+...++...||++|+|.+|+.... -.|||+|+..++. +|+.
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~~----------------------------~~IieIgav~~~~~~~g~i----- 72 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAKT----------------------------DALLEIAAITLKMDEQGWL----- 72 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTTT----------------------------BCEEEEEEEEEEECTTSCE-----
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCCC----------------------------CeEEEEEEEEEEEcCCCcc-----
Confidence 4444666788899999999999984211 1389999998763 4442
Q ss_pred CCCCeeEEEEeccccC
Q 048636 113 GGNNKFIWEFNFRDFD 128 (150)
Q Consensus 113 ~~~~~~~~~FNF~~F~ 128 (150)
.....|+.++-|
T Consensus 73 ----~~~~~f~~~v~P 84 (235)
T 3v9w_A 73 ----MPDTTLHFHVEP 84 (235)
T ss_dssp ----EEEEEEEEEBCC
T ss_pred ----cccceEEEEECC
Confidence 245667776444
No 9
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=89.69 E-value=0.53 Score=34.53 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=30.5
Q ss_pred hCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCCCCCCCCCCCCCCeeEEEEec
Q 048636 45 RYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNF 124 (150)
Q Consensus 45 ~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~g~~p~~g~~~~~~~~~~FNF 124 (150)
..+||++|+|.+|+.... -.|||+|...++.+++ .....|+.
T Consensus 4 ~~~~v~iD~ETTGl~~~~----------------------------~~IieIg~v~~~~~~~----------~~~~~~~~ 45 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPER----------------------------DRIIEIATLVTDANLN----------ILAEGPTI 45 (180)
T ss_dssp GGCEEEEEEEESSSCTTT----------------------------CCEEEEEEEEECTTCC----------EEEEEEEE
T ss_pred CCcEEEEEeeCCCCCCCC----------------------------CceEEEEEEEEcCCCc----------EecCCcce
Confidence 347999999999974110 1399999997765543 23334777
Q ss_pred cccC
Q 048636 125 RDFD 128 (150)
Q Consensus 125 ~~F~ 128 (150)
++-|
T Consensus 46 lv~P 49 (180)
T 2igi_A 46 AVHQ 49 (180)
T ss_dssp ECCC
T ss_pred EECC
Confidence 7444
No 10
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=87.79 E-value=1.8 Score=32.11 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=31.6
Q ss_pred CceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC-CCCCCCCCCCCCCeeEEEEecc
Q 048636 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNFR 125 (150)
Q Consensus 47 ~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~-~g~~p~~g~~~~~~~~~~FNF~ 125 (150)
.||+||+|.+|+..... . ..-.|||+|...++. +|+ ....|+.+
T Consensus 11 ~~vviD~ETTGl~~~~~------~------------------~~~~Iieigav~~~~~~g~-----------i~~~f~~l 55 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP------E------------------FVHEIIEFPVVLLNTHTLE-----------IEDTFQQY 55 (204)
T ss_dssp EEEECCCEECCCTTCCT------T------------------SCCCEEEEEEEEEETTTCS-----------EEEEEEEE
T ss_pred EEEEEEEecCCcCCCCC------C------------------CCCcEEEEEEEEEECCCCE-----------EeeeeeeE
Confidence 58999999999753211 0 012499999999885 554 23457777
Q ss_pred ccCC
Q 048636 126 DFDV 129 (150)
Q Consensus 126 ~F~~ 129 (150)
+-|.
T Consensus 56 v~P~ 59 (204)
T 1w0h_A 56 VRPE 59 (204)
T ss_dssp BCCS
T ss_pred ECCC
Confidence 5443
No 11
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=87.28 E-value=0.63 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=11.9
Q ss_pred hhhCCceeccccccccc
Q 048636 43 IDRYPFISMDTEFPGLV 59 (150)
Q Consensus 43 i~~~~fIAiDtEF~Gl~ 59 (150)
+...+||++|+|.+|+.
T Consensus 9 l~~~~~v~iD~ETTGl~ 25 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLD 25 (186)
T ss_dssp ----CEEEEEEEESCSC
T ss_pred CcCCCEEEEEEECCCCC
Confidence 46679999999999973
No 12
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=86.19 E-value=0.69 Score=40.25 Aligned_cols=36 Identities=22% Similarity=0.017 Sum_probs=27.0
Q ss_pred hhhCCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCCCC
Q 048636 43 IDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGN 106 (150)
Q Consensus 43 i~~~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~g~ 106 (150)
+....||++|+|.||+.... -.|||+|...++.+|+
T Consensus 6 ~~~~~~vv~DlETTGl~p~~----------------------------d~IIEIgaV~vd~~g~ 41 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPAL----------------------------DRPAQFAAIRTDSEFN 41 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTT----------------------------SCEEEEEEEEECTTSC
T ss_pred CCCCCEEEEEEECCCCCCCC----------------------------CeEEEEEEEEEECCCe
Confidence 45678999999999984110 1399999998887765
No 13
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=83.29 E-value=3.4 Score=33.09 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=32.0
Q ss_pred CCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC-CCCCCCCCCCCCCeeEEEEec
Q 048636 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNF 124 (150)
Q Consensus 46 ~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~-~g~~p~~g~~~~~~~~~~FNF 124 (150)
-.||+||+|.||+...+. .. .-.|||+|+..++. +|+ ....|+.
T Consensus 78 ~~~vviD~ETTGl~~~~~------~~------------------~~~IIeIgaV~v~~~~g~-----------i~~~f~~ 122 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP------EF------------------VHEIIEFPVVLLNTHTLE-----------IEDTFQQ 122 (299)
T ss_dssp SEEEEECCEECCCTTCCT------TC------------------CCCEEEEEEEEEETTTCC-----------EEEEEEE
T ss_pred ceEEEEEeecccCCCCCC------CC------------------CCceEEEEEEEEECCCCe-----------Eeeeeee
Confidence 368999999999853211 00 12499999999876 343 3456777
Q ss_pred cccCC
Q 048636 125 RDFDV 129 (150)
Q Consensus 125 ~~F~~ 129 (150)
++-|.
T Consensus 123 lV~P~ 127 (299)
T 1zbh_A 123 YVRPE 127 (299)
T ss_dssp EBCCS
T ss_pred eecCC
Confidence 75554
No 14
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=82.95 E-value=3 Score=31.81 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=30.5
Q ss_pred CceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCC-CCCCCCCCCCCCeeEEEEecc
Q 048636 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS-GNLPDLGSGGNNKFIWEFNFR 125 (150)
Q Consensus 47 ~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~-g~~p~~g~~~~~~~~~~FNF~ 125 (150)
.||+||+|.+|+.... + .-.|||+|...++.. ++ ....|+.+
T Consensus 32 ~~vviD~ETTGl~~~~---------d-----------------~~~IieIgav~v~~~~~~-----------i~~~f~~l 74 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI---------H-----------------PQEIIEFPILKLNGRTME-----------IESTFHMY 74 (224)
T ss_dssp EEEEECCEECCCC-CC---------S-----------------SCCEEEEEEEEEETTTCC-----------EEEEEEEE
T ss_pred eEEEEEEEcCCCCCCC---------C-----------------CcceEEEEEEEEecCCcE-----------EeeeeeeE
Confidence 6899999999974211 0 124999999988754 22 34567777
Q ss_pred ccCC
Q 048636 126 DFDV 129 (150)
Q Consensus 126 ~F~~ 129 (150)
+-|.
T Consensus 75 V~P~ 78 (224)
T 2xri_A 75 VQPV 78 (224)
T ss_dssp CCCS
T ss_pred ECCC
Confidence 5543
No 15
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=77.08 E-value=4.4 Score=33.55 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=31.9
Q ss_pred CCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC-CCCCCCCCCCCCCeeEEEEec
Q 048636 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNF 124 (150)
Q Consensus 46 ~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~-~g~~p~~g~~~~~~~~~~FNF 124 (150)
-.||+||+|.||+...+. . ..-.|||+|+..++. +|+ ....|+.
T Consensus 128 ~~~vviD~ETTGl~~~~~------~------------------~~deIIEIgaV~vd~~~g~-----------i~~~f~~ 172 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP------E------------------FVHEIIEFPVVLLNTHTLE-----------IEDTFQQ 172 (349)
T ss_dssp SEEEECCCEECCCTTCCT------T------------------CCCCEEECCEEEEETTTTE-----------EEEEECC
T ss_pred CeEEEEEEecCCCCCcCC------C------------------CCCeEEEEEEEEEECCCce-----------EeEEEEE
Confidence 367999999999843211 0 012499999999875 333 4456777
Q ss_pred cccCC
Q 048636 125 RDFDV 129 (150)
Q Consensus 125 ~~F~~ 129 (150)
++-|.
T Consensus 173 lVkP~ 177 (349)
T 1zbu_A 173 YVRPE 177 (349)
T ss_dssp BEECS
T ss_pred EECCC
Confidence 75554
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=75.58 E-value=2.3 Score=32.10 Aligned_cols=16 Identities=31% Similarity=0.384 Sum_probs=13.8
Q ss_pred hhCCceeccccccccc
Q 048636 44 DRYPFISMDTEFPGLV 59 (150)
Q Consensus 44 ~~~~fIAiDtEF~Gl~ 59 (150)
.+.+||++|+|.||+.
T Consensus 7 ~~~~~v~~D~ETTGL~ 22 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLD 22 (186)
T ss_dssp CTTCEEEEEEEESSSC
T ss_pred CCCcEEEEEEECCCCC
Confidence 3568999999999985
No 17
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=71.96 E-value=6.9 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=24.8
Q ss_pred CceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecC-CCC
Q 048636 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGN 106 (150)
Q Consensus 47 ~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~-~g~ 106 (150)
.||+||+|.||+..... + ...|||+|...++. +|+
T Consensus 20 ~~vviD~ETTGl~~~~d-------~------------------~~eIIEIgaV~vd~~~g~ 55 (308)
T 3cg7_A 20 TLLILDFETTSDAANQD-------Y------------------PCEVIQFAIVAYDVPNDK 55 (308)
T ss_dssp EEEEEEEEECCBTTBCS-------C------------------CCCEEEEEEEEEETTTTE
T ss_pred eEEEEEeecCCCCCCCC-------C------------------CCCeEEEEEEEEEcCCCE
Confidence 58999999999843211 0 12499999999975 443
No 18
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=70.64 E-value=2.8 Score=31.23 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=13.2
Q ss_pred hhCCceeccccccccc
Q 048636 44 DRYPFISMDTEFPGLV 59 (150)
Q Consensus 44 ~~~~fIAiDtEF~Gl~ 59 (150)
...+||++|+|.||+.
T Consensus 7 ~~~~~vviD~ETTGl~ 22 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLD 22 (194)
T ss_dssp -CCEEEEEEEEESCSC
T ss_pred CCCCEEEEEeECCCCC
Confidence 4568999999999984
No 19
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=68.61 E-value=2.5 Score=32.20 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCC
Q 048636 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS 104 (150)
Q Consensus 46 ~~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~ 104 (150)
.+||+||+|.||+.... -.|||+|+..++.+
T Consensus 10 ~~~v~iD~ETTGl~~~~----------------------------~~IieIg~v~~~~~ 40 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVE----------------------------PEIAELSLFAVHRS 40 (238)
T ss_dssp SEEEEEEEEESSCGGGC----------------------------CCEEEEEEEEEEHH
T ss_pred CeEEEEEeeCCCcCCCC----------------------------CcEEEEEEEEeccc
Confidence 46999999999984211 13999999988753
No 20
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=65.27 E-value=3.3 Score=30.53 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=12.4
Q ss_pred CCceeccccccccc
Q 048636 46 YPFISMDTEFPGLV 59 (150)
Q Consensus 46 ~~fIAiDtEF~Gl~ 59 (150)
.+||++|+|.+|+.
T Consensus 9 ~~~vviD~ETTGl~ 22 (194)
T 2gui_A 9 TRQIVLDTETTGMN 22 (194)
T ss_dssp CEEEEEEEEESCCC
T ss_pred CCEEEEEeeCCCCC
Confidence 47999999999985
No 21
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=64.31 E-value=3.4 Score=32.13 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=22.9
Q ss_pred CceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCC
Q 048636 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS 104 (150)
Q Consensus 47 ~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~ 104 (150)
+||++|+|-||+.... =.|||+|+...+.+
T Consensus 13 ~~vv~D~ETTGl~~~~----------------------------d~IiEIgav~v~~~ 42 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSR----------------------------PEVTELCLLAVHRR 42 (242)
T ss_dssp EEEEEEEEESSCGGGC----------------------------CCEEEEEEEEEEHH
T ss_pred eEEEEEeecCCCCCCC----------------------------CeeEEEEEEEecCC
Confidence 6999999999985321 13999999887654
No 22
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=53.35 E-value=6.6 Score=32.26 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.2
Q ss_pred CceecccccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeeeecCC
Q 048636 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS 104 (150)
Q Consensus 47 ~fIAiDtEF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~f~~~ 104 (150)
+||++|+|-||+..... .|||+|+..++.+
T Consensus 13 tfVv~DlETTGL~~~~d----------------------------~IIEIgaV~v~~~ 42 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSRP----------------------------EVTELCLLAVHRR 42 (314)
T ss_dssp EEEEEEEEESSCGGGCC----------------------------CEEEEEEEEEEHH
T ss_pred CEEEEEEECCCCCCCCC----------------------------eEEEEEEEEEECC
Confidence 59999999999853211 3999999988754
No 23
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=51.15 E-value=13 Score=27.53 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=26.5
Q ss_pred cccCCCCCCCCCceEEEecccCHHHHHHHHHHHhhhCCceecccccccc
Q 048636 10 LDSSSNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGL 58 (150)
Q Consensus 10 ~~~~~~~~~~~~~~v~dV~~~Nf~~el~~I~~~i~~~~fIAiDtEF~Gl 58 (150)
|+-+.++...++-.+.=-+.+-++.....+.+.+.....|++|+|+.+.
T Consensus 4 ~~~~lp~~~f~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~ 52 (208)
T 2e6m_A 4 LEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPI 52 (208)
T ss_dssp ---CCCBCCCCSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC-
T ss_pred hhccCCccccCCcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCC
Confidence 4555555555443222112222332333677778888999999998775
No 24
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=49.16 E-value=3.8 Score=30.33 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=11.9
Q ss_pred hCCceeccccccccc
Q 048636 45 RYPFISMDTEFPGLV 59 (150)
Q Consensus 45 ~~~fIAiDtEF~Gl~ 59 (150)
..+||+||+|.+|+.
T Consensus 4 ~~~~vviD~ETTGl~ 18 (189)
T 1wlj_A 4 SREVVAMDCEMVGLG 18 (189)
T ss_dssp --CEEEEEEEEEEET
T ss_pred CCeEEEEEeECcCcC
Confidence 458999999999974
No 25
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=43.79 E-value=33 Score=27.93 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHhhhCC--ceeccc------ccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhh--ccceeeeee
Q 048636 29 ASNLESEFELISQVIDRYP--FISMDT------EFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVD--ALNLIQVGL 98 (150)
Q Consensus 29 ~~Nf~~el~~I~~~i~~~~--fIAiDt------EF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~--~~~iiQlGl 98 (150)
+.++++.+..+++.++.+. ||++|. .+||+..... +-+ ++.|--..+|.-.+ ..+++-+.|
T Consensus 209 ~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~p-----gGl----t~~e~~~il~~l~~~~~~~vvg~Di 279 (330)
T 4g3h_A 209 RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVREN-----NGL----SFDELKQLLGLLLESFKDRLKAVEV 279 (330)
T ss_dssp HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCS-----SCB----CHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCC-----CCC----CHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 4556666778888887755 999987 4566543322 223 56777888888777 667876666
Q ss_pred eeecC
Q 048636 99 TLSDS 103 (150)
Q Consensus 99 t~f~~ 103 (150)
+=++.
T Consensus 280 vEvnP 284 (330)
T 4g3h_A 280 TEYNP 284 (330)
T ss_dssp ECCCG
T ss_pred EEECc
Confidence 65544
No 26
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=42.35 E-value=16 Score=32.08 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhCCceeccccccccc
Q 048636 33 ESEFELISQVIDRYPFISMDTEFPGLV 59 (150)
Q Consensus 33 ~~el~~I~~~i~~~~fIAiDtEF~Gl~ 59 (150)
.+++..+.+.++.+.+|++|||.+|+.
T Consensus 13 ~~~l~~~~~~l~~~~~va~DtEttgl~ 39 (605)
T 2kfn_A 13 EETLKAWIAKLEKAPVFAFDTETDSLD 39 (605)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEESCSC
T ss_pred HHHHHHHHHhcccCCeEEEEEecCCCC
Confidence 466666666677789999999999974
No 27
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=32.96 E-value=23 Score=30.17 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhCCceecccccccc
Q 048636 34 SEFELISQVIDRYPFISMDTEFPGL 58 (150)
Q Consensus 34 ~el~~I~~~i~~~~fIAiDtEF~Gl 58 (150)
+++..+.+.+..+..||+|||+.+.
T Consensus 117 e~L~~~l~~L~~~~~vavDtE~~~~ 141 (428)
T 3saf_A 117 DELVELNEKLLNCQEFAVNLEHHSY 141 (428)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEECT
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCC
Confidence 6677777778889999999999764
No 28
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=29.29 E-value=70 Score=25.25 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHhh-hCC--ceeccc------ccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeeee
Q 048636 30 SNLESEFELISQVID-RYP--FISMDT------EFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTL 100 (150)
Q Consensus 30 ~Nf~~el~~I~~~i~-~~~--fIAiDt------EF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt~ 100 (150)
.+++..+..+.+.+. .+. ||+||. ..||+..... +-+ +..|--+.+|.-....+++=+.|+=
T Consensus 201 ~g~~~~~~~~l~~~~~~~~~vylSiDiDvlDp~~aPgtgtp~p-----gGl----t~~e~~~~l~~l~~~~~vvg~DivE 271 (299)
T 2cev_A 201 LGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVI-----GGL----TYRESHLAMEMLAEAQIITSAEFVE 271 (299)
T ss_dssp HCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCCCSSCCS-----SCB----CHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCHHHHHHHHHHHhccCCCeEEEEEccCccChhhcCCCCCCCC-----CCC----CHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 344445566666665 344 999887 3455432222 333 5677778888777777777666664
Q ss_pred ec
Q 048636 101 SD 102 (150)
Q Consensus 101 f~ 102 (150)
++
T Consensus 272 ~~ 273 (299)
T 2cev_A 272 VN 273 (299)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 29
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=29.15 E-value=38 Score=27.67 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhCCceecccccccc
Q 048636 33 ESEFELISQVIDRYPFISMDTEFPGL 58 (150)
Q Consensus 33 ~~el~~I~~~i~~~~fIAiDtEF~Gl 58 (150)
.+++..+.+.+..+.+||+|||+.+.
T Consensus 9 ~~~l~~~~~~l~~~~~va~D~E~~~~ 34 (375)
T 1yt3_A 9 DDALASLCEAVRAFPAIALDTEFVRT 34 (375)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCeEEEEeeecCC
Confidence 46777777777788999999998764
No 30
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=28.86 E-value=87 Score=25.29 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=46.4
Q ss_pred EEecccCHHHHHHHHHHHhhh--CCceecccc------cccccccCCCCCCCCCCCCCCCchHHHHHHHHh-hhccceee
Q 048636 25 REVWASNLESEFELISQVIDR--YPFISMDTE------FPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSN-VDALNLIQ 95 (150)
Q Consensus 25 ~dV~~~Nf~~el~~I~~~i~~--~~fIAiDtE------F~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~n-v~~~~iiQ 95 (150)
.+|++.+++..+..|.+.+.. .-||+||.. .||+..... +-+ +..|--..+|.- ....+++=
T Consensus 225 ~ei~~~g~~~v~~~i~~~l~~~~~vylSiDiDvLDpa~aPgtgtp~p-----gGl----t~~e~~~~l~~l~~~~~~vvg 295 (336)
T 1xfk_A 225 KAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAASAPGVSAPAA-----RGV----SLEALAPYFDRILHYKNKLMI 295 (336)
T ss_dssp GGCSTTTHHHHHHHHHHHHHTCSEEEEEEEGGGSBTTTCCSSSSCBS-----SCC----CHHHHHHHHHHHHHCTTTEEE
T ss_pred HHHHhcCHHHHHHHHHHHhcCCCeEEEEEeeccCChhcCCCCCCCCC-----CCC----CHHHHHHHHHHHHhCCCCEEE
Confidence 466777788888888888865 467999864 566543322 323 567778888877 66777876
Q ss_pred eeeeee
Q 048636 96 VGLTLS 101 (150)
Q Consensus 96 lGlt~f 101 (150)
+.|+=+
T Consensus 296 ~DivEv 301 (336)
T 1xfk_A 296 ADIAEY 301 (336)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 666644
No 31
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=27.92 E-value=28 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=20.4
Q ss_pred cccCHHHHHHHHHH-Hh-hhCCceecccccc
Q 048636 28 WASNLESEFELISQ-VI-DRYPFISMDTEFP 56 (150)
Q Consensus 28 ~~~Nf~~el~~I~~-~i-~~~~fIAiDtEF~ 56 (150)
+...+...+..+.+ .+ ....+|++|||+.
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~ 56 (206)
T 1vk0_A 26 SSTDISPYLSLIREDSILNGNRAVIFDVYWD 56 (206)
T ss_dssp SSCCCHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhhhhcCCCEEEEEeecc
Confidence 46667777776633 33 5578999999985
No 32
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=26.32 E-value=73 Score=25.66 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=42.1
Q ss_pred EecccCHHHHHHHHHHHhhh---CCceecccc------cccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeee
Q 048636 26 EVWASNLESEFELISQVIDR---YPFISMDTE------FPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQV 96 (150)
Q Consensus 26 dV~~~Nf~~el~~I~~~i~~---~~fIAiDtE------F~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQl 96 (150)
||++...++.+..+.+.+.. .-||+||.. .||+..... +-+ +..|--+.+|.-....+++-+
T Consensus 216 ei~~~g~~~v~~~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~p-----gGl----t~~e~~~il~~l~~~~~vvg~ 286 (322)
T 3m1r_A 216 MIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGP-----GGL----YTDELLEAVKYIAQQPNVAGI 286 (322)
T ss_dssp HHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCTTSSSCCS-----SCB----CHHHHHHHHHHHHTSTTEEEE
T ss_pred HHhhcCHHHHHHHHHHHhhccCCeEEEEEeecccChhhCCCCCCCCC-----CCC----CHHHHHHHHHHHhccCCEEEE
Confidence 34444555666666666654 368999874 456532222 323 567888888887777777766
Q ss_pred eeeeec
Q 048636 97 GLTLSD 102 (150)
Q Consensus 97 Glt~f~ 102 (150)
.|+=++
T Consensus 287 DivEv~ 292 (322)
T 3m1r_A 287 EIVEVD 292 (322)
T ss_dssp EEECCC
T ss_pred EEEEEC
Confidence 666443
No 33
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=24.58 E-value=74 Score=24.97 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=41.1
Q ss_pred ecccCHHHHHHHHHHHhh-hCCceeccc------ccccccccCCCCCCCCCCCCCCCchHHHHHHHHhhhccceeeeeee
Q 048636 27 VWASNLESEFELISQVID-RYPFISMDT------EFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLT 99 (150)
Q Consensus 27 V~~~Nf~~el~~I~~~i~-~~~fIAiDt------EF~Gl~~~~~~~~~~~~~~~~~t~eerY~~lr~nv~~~~iiQlGlt 99 (150)
|++.+++..+..+.+.++ +.-||+||. ..||+..... +-+ +..|--+.+|.-....+++=+.|+
T Consensus 191 i~~~g~~~v~~~~~~~l~~~~vylSiDiDvlDp~~aPgtgtp~p-----gGl----t~~e~~~~l~~l~~~~~vvg~Div 261 (290)
T 2ef5_A 191 VDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVP-----GGL----TYREAHLLMEILAESGRVQSLDLV 261 (290)
T ss_dssp HHHHCHHHHHHHHHHHTTTSCEEEEEEGGGBCTTTCCCCSSCCS-----SCB----CHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHhcCHHHHHHHHHHhcCCCcEEEEEccCCCChhhCCCCCCCCC-----CCC----CHHHHHHHHHHHHcCCCEEEEEEE
Confidence 333344444666666664 456999986 4555432222 333 567888888887777777766666
Q ss_pred eecC
Q 048636 100 LSDS 103 (150)
Q Consensus 100 ~f~~ 103 (150)
=++.
T Consensus 262 E~~P 265 (290)
T 2ef5_A 262 EVNP 265 (290)
T ss_dssp CCCT
T ss_pred EECC
Confidence 4443
No 34
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=24.45 E-value=99 Score=21.09 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCCCCceEEEecccCHHHHHHHHHHHhhhC
Q 048636 17 SSSNSIIIREVWASNLESEFELISQVIDRY 46 (150)
Q Consensus 17 ~~~~~~~v~dV~~~Nf~~el~~I~~~i~~~ 46 (150)
-++..+.||..+...+...+...++++...
T Consensus 4 m~p~~~~IR~a~~~D~~~i~~l~~~~~~~~ 33 (173)
T 4h89_A 4 MSPEALQVRDAEDADWPAILPFFREIVSAG 33 (173)
T ss_dssp -CTTTCEEEECCGGGHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999888888776653
No 35
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=21.66 E-value=63 Score=21.99 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=19.6
Q ss_pred ccccccCCC-CCCCCCceEEEecccCHHHHHHHHHHHh
Q 048636 7 STDLDSSSN-SSSSNSIIIREVWASNLESEFELISQVI 43 (150)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~v~dV~~~Nf~~el~~I~~~i 43 (150)
||+..+.+. ...++.+.||..+.+.+++.+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~iR~~~~~D~~~i~~l~~~~~ 40 (188)
T 3h4q_A 3 SDKIHHHHHHENLYFQGMIRLGKMSDLDQILNLVEEAK 40 (188)
T ss_dssp ----------------CCEEECCGGGHHHHHHHHHHHH
T ss_pred CCCCCCcccccCcceeEEEEecCHhhHHHHHHHHHHHH
Confidence 456666665 5777789999999999999888888773
No 36
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=20.81 E-value=52 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhCCceecccccccc
Q 048636 33 ESEFELISQVIDRYPFISMDTEFPGL 58 (150)
Q Consensus 33 ~~el~~I~~~i~~~~fIAiDtEF~Gl 58 (150)
.+++..+.+.+..+..||+|||+.+.
T Consensus 93 ~~~L~~~~~~L~~~~~vavDtE~~~~ 118 (410)
T 2hbj_A 93 STELESMLEDLKNTKEIAVDLEHHDY 118 (410)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCceEEEeeecCC
Confidence 46777777777788999999999774
Done!