BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048637
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter
Length = 524
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 41 FIIGVEMAERFAFCGTGSNLITYLTGPLGQST------ATAAQNANKWSGTSQLLPLLGA 94
+II E ERF+F G + L +L L S A A + + PLLG
Sbjct: 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 95 FVGDSFLGRYQTIFLLLL 112
++ D F G+Y TI L L
Sbjct: 76 WIADRFFGKYNTILWLSL 93
>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation.
pdb|4APS|B Chain B, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation
Length = 491
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 46 EMAERFAFCGTGSNLITYL-----TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF 100
EM ERF++ G + L+ Y+ TG L + ATAA ++ L +G FV D
Sbjct: 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 101 LGRYQTIF 108
+G +F
Sbjct: 82 IGARPAVF 89
>pdb|1ZD1|A Chain A, Human Sulfortransferase Sult4a1
pdb|1ZD1|B Chain B, Human Sulfortransferase Sult4a1
Length = 284
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 2 DISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERF 51
D + E L VD C + PV R G WK I V M E+F
Sbjct: 219 DKAQLEALTEHCHQLVDQCCNAEALPVGRGRVGLWKD---IFTVSMNEKF 265
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 43 IGVEMAERFAFCGTGSNLITYLTGPLG 69
IG+E AE FA G +I L PLG
Sbjct: 160 IGIEAAEAFAKAGKKVTVIDILDRPLG 186
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 193 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 252
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 253 GYTFCGLAALVIL 265
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 169 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 228
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 229 GYTFCGLAALVIL 241
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 169 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 228
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 229 GYTFCGLAALVIL 241
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 189 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 248
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 249 GYTFCGLAALVIL 261
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 169 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 228
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 229 GYTFCGLAALVIL 241
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 168 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 227
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 228 GYTFCGLAALVIL 240
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 38 SALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96
S L +G E+ R A+C ++L +T L + TA W G +P + A
Sbjct: 190 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249
Query: 97 GDSFLGRYQTIFL 109
G +F G + L
Sbjct: 250 GYTFCGLAALVIL 262
>pdb|2F2F|C Chain C, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
pdb|2F2F|F Chain F, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
Length = 186
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 19 DCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGS 58
+ +DY+G+ + GG ++G A+ FAF G G+
Sbjct: 67 ELIDYKGKEYEKLRDGGTLVQFKVVGA--AKCFAFPGEGT 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,236,034
Number of Sequences: 62578
Number of extensions: 118492
Number of successful extensions: 242
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 25
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)