Query 048637
Match_columns 116
No_of_seqs 119 out of 1056
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3104 PTR2 Dipeptide/tripept 99.6 1.8E-14 3.8E-19 116.0 10.0 92 24-115 8-103 (498)
2 PRK10207 dipeptide/tripeptide 99.5 1.2E-13 2.6E-18 111.2 10.1 83 32-114 9-91 (489)
3 PRK15462 dipeptide/tripeptide 99.4 5.2E-12 1.1E-16 102.3 10.2 81 34-114 6-86 (493)
4 TIGR00924 yjdL_sub1_fam amino 99.3 1.4E-11 3.1E-16 98.6 10.6 83 32-114 5-89 (475)
5 PRK09584 tppB putative tripept 99.2 8.8E-11 1.9E-15 94.7 11.2 81 34-114 18-98 (500)
6 PRK10642 proline/glycine betai 99.0 2.8E-09 6E-14 85.2 9.1 87 25-112 238-324 (490)
7 KOG1237 H+/oligopeptide sympor 99.0 2.4E-09 5.1E-14 88.3 8.8 97 18-114 15-114 (571)
8 TIGR00883 2A0106 metabolite-pr 98.8 3.2E-08 7E-13 74.6 9.8 86 25-111 207-292 (394)
9 PRK09952 shikimate transporter 98.8 2.3E-08 4.9E-13 78.9 9.3 85 27-112 240-324 (438)
10 PRK10054 putative transporter; 98.8 2.7E-08 5.8E-13 77.6 9.5 78 35-113 5-82 (395)
11 TIGR00882 2A0105 oligosacchari 98.8 7.2E-08 1.6E-12 74.5 9.7 73 38-111 3-75 (396)
12 PRK09528 lacY galactoside perm 98.8 6.5E-08 1.4E-12 75.4 9.5 73 38-111 11-83 (420)
13 PRK10406 alpha-ketoglutarate t 98.8 6.3E-08 1.4E-12 76.1 9.4 84 27-112 234-317 (432)
14 PRK12382 putative transporter; 98.7 8E-08 1.7E-12 74.0 9.0 75 37-112 15-89 (392)
15 PRK05122 major facilitator sup 98.7 1E-07 2.3E-12 73.4 8.9 77 36-113 14-90 (399)
16 PRK15075 citrate-proton sympor 98.7 1.5E-07 3.2E-12 74.0 9.4 76 35-111 236-311 (434)
17 TIGR00891 2A0112 putative sial 98.6 4.6E-07 1E-11 68.9 10.1 83 29-113 4-86 (405)
18 TIGR00886 2A0108 nitrite extru 98.6 2.4E-07 5.2E-12 70.0 8.4 74 40-114 4-77 (366)
19 PRK11646 multidrug resistance 98.6 4.3E-07 9.3E-12 70.9 9.7 79 33-114 8-86 (400)
20 PF12832 MFS_1_like: MFS_1 lik 98.6 5.6E-07 1.2E-11 56.1 8.2 63 50-114 13-75 (77)
21 COG2271 UhpC Sugar phosphate p 98.6 1.9E-07 4.1E-12 74.7 7.5 76 37-112 252-328 (448)
22 PRK09556 uhpT sugar phosphate 98.6 4E-07 8.6E-12 72.3 9.1 72 38-110 259-330 (467)
23 PRK03633 putative MFS family t 98.6 4.4E-07 9.6E-12 69.9 9.0 79 34-114 3-81 (381)
24 PRK15011 sugar efflux transpor 98.5 1.2E-06 2.7E-11 67.9 10.6 79 33-112 212-290 (393)
25 TIGR00897 2A0118 polyol permea 98.5 7.4E-07 1.6E-11 69.3 9.1 78 34-113 10-87 (402)
26 PRK10213 nepI ribonucleoside t 98.5 1.3E-06 2.9E-11 68.0 10.3 86 27-114 10-95 (394)
27 PRK10504 putative transporter; 98.5 1.1E-06 2.3E-11 69.3 9.7 76 36-113 9-84 (471)
28 PRK03893 putative sialic acid 98.5 1.4E-06 3E-11 68.9 9.9 88 24-113 6-94 (496)
29 PRK09556 uhpT sugar phosphate 98.5 3.3E-07 7.1E-12 72.7 6.3 92 16-112 7-102 (467)
30 TIGR02332 HpaX 4-hydroxyphenyl 98.5 1.6E-06 3.5E-11 67.9 9.5 78 35-114 6-83 (412)
31 TIGR00711 efflux_EmrB drug res 98.4 1.7E-06 3.6E-11 68.0 9.2 74 39-113 257-330 (485)
32 COG2223 NarK Nitrate/nitrite t 98.4 1.2E-06 2.6E-11 69.8 8.3 76 38-114 219-294 (417)
33 PRK03699 putative transporter; 98.4 2.8E-06 6.2E-11 65.8 10.2 75 37-112 205-279 (394)
34 TIGR00891 2A0112 putative sial 98.4 1.5E-06 3.3E-11 66.0 8.5 72 41-113 242-313 (405)
35 PF07690 MFS_1: Major Facilita 98.4 2.3E-06 5E-11 63.8 9.2 68 46-114 5-72 (352)
36 PRK11652 emrD multidrug resist 98.4 1.6E-06 3.6E-11 66.7 8.6 77 35-113 6-82 (394)
37 PLN00028 nitrate transmembrane 98.4 2.8E-06 6.1E-11 68.0 10.2 80 32-113 31-110 (476)
38 TIGR00901 2A0125 AmpG-related 98.4 1.9E-06 4.2E-11 65.4 8.6 74 38-113 210-284 (356)
39 TIGR00895 2A0115 benzoate tran 98.4 2.9E-06 6.2E-11 64.1 9.4 77 35-113 15-91 (398)
40 PRK15402 multidrug efflux syst 98.4 1.7E-06 3.8E-11 66.9 8.2 78 35-113 8-87 (406)
41 TIGR00926 2A1704 Peptide:H+ sy 98.4 4.5E-07 9.8E-12 76.0 5.2 63 52-114 2-64 (654)
42 TIGR00899 2A0120 sugar efflux 98.4 2.2E-06 4.8E-11 64.8 8.5 65 45-110 5-69 (375)
43 PRK12307 putative sialic acid 98.4 3E-06 6.5E-11 65.7 9.2 80 33-114 14-93 (426)
44 PRK15011 sugar efflux transpor 98.4 4.3E-06 9.3E-11 64.8 10.1 85 24-110 2-87 (393)
45 KOG2532 Permease of the major 98.4 4.3E-06 9.3E-11 67.6 10.1 96 3-100 226-321 (466)
46 PRK15034 nitrate/nitrite trans 98.4 2.5E-06 5.3E-11 69.0 8.6 72 39-113 254-325 (462)
47 PRK11551 putative 3-hydroxyphe 98.3 3.2E-06 7E-11 65.1 8.7 79 33-113 11-89 (406)
48 PRK10133 L-fucose transporter; 98.3 5E-06 1.1E-10 66.0 9.8 80 33-114 22-101 (438)
49 PRK11273 glpT sn-glycerol-3-ph 98.3 2.1E-06 4.6E-11 67.9 7.5 52 60-113 51-102 (452)
50 PRK03699 putative transporter; 98.3 4.8E-06 1E-10 64.5 9.4 78 34-113 4-81 (394)
51 PRK09874 drug efflux system pr 98.3 8.7E-06 1.9E-10 62.5 10.0 74 38-113 15-93 (408)
52 PRK11043 putative transporter; 98.3 5.4E-06 1.2E-10 64.0 8.8 64 49-113 15-80 (401)
53 TIGR00893 2A0114 d-galactonate 98.3 8.7E-06 1.9E-10 60.9 9.5 68 37-105 215-282 (399)
54 TIGR00710 efflux_Bcr_CflA drug 98.3 5.7E-06 1.2E-10 62.7 8.5 77 35-113 3-79 (385)
55 TIGR00896 CynX cyanate transpo 98.3 1.7E-05 3.7E-10 60.2 11.1 71 39-111 199-270 (355)
56 PRK03545 putative arabinose tr 98.3 8.7E-06 1.9E-10 62.8 9.5 73 39-113 11-83 (390)
57 TIGR00890 2A0111 Oxalate/Forma 98.3 2.1E-06 4.6E-11 64.3 5.9 61 52-114 18-78 (377)
58 TIGR01299 synapt_SV2 synaptic 98.3 2.6E-06 5.7E-11 72.3 6.9 55 58-113 187-241 (742)
59 TIGR00894 2A0114euk Na(+)-depe 98.3 5.4E-06 1.2E-10 65.4 8.3 75 27-104 253-327 (465)
60 TIGR00886 2A0108 nitrite extru 98.3 4.8E-06 1E-10 62.9 7.7 72 40-112 228-299 (366)
61 TIGR00897 2A0118 polyol permea 98.2 9.8E-06 2.1E-10 63.0 9.5 69 38-108 223-291 (402)
62 PRK14995 methyl viologen resis 98.2 8.9E-06 1.9E-10 65.3 9.1 74 39-113 261-334 (495)
63 TIGR00712 glpT glycerol-3-phos 98.2 2.2E-06 4.7E-11 67.5 5.1 53 59-113 48-100 (438)
64 cd06174 MFS The Major Facilita 98.2 8.2E-06 1.8E-10 60.3 7.8 71 42-114 4-74 (352)
65 KOG0569 Permease of the major 98.2 4.6E-06 1E-10 67.8 6.8 90 24-114 254-345 (485)
66 TIGR00900 2A0121 H+ Antiporter 98.2 7.8E-06 1.7E-10 61.1 7.5 65 47-113 9-73 (365)
67 PRK10406 alpha-ketoglutarate t 98.2 2.3E-05 4.9E-10 61.6 10.2 67 46-114 31-103 (432)
68 PRK12307 putative sialic acid 98.2 1.9E-05 4.1E-10 61.3 9.6 60 52-113 246-305 (426)
69 TIGR00885 fucP L-fucose:H+ sym 98.1 2.2E-05 4.8E-10 61.8 9.6 75 38-114 4-78 (410)
70 TIGR00899 2A0120 sugar efflux 98.1 2.7E-05 5.8E-10 58.9 9.7 59 53-112 215-273 (375)
71 TIGR00889 2A0110 nucleoside tr 98.1 2.3E-05 4.9E-10 61.8 9.6 70 42-112 7-77 (418)
72 TIGR01301 GPH_sucrose GPH fami 98.1 1.6E-05 3.4E-10 64.6 8.7 73 38-112 5-81 (477)
73 TIGR00890 2A0111 Oxalate/Forma 98.1 1.7E-05 3.8E-10 59.3 8.3 65 47-113 215-279 (377)
74 TIGR02332 HpaX 4-hydroxyphenyl 98.1 2.3E-05 5E-10 61.4 9.3 68 38-106 243-311 (412)
75 TIGR00887 2A0109 phosphate:H+ 98.1 4.4E-06 9.6E-11 67.0 5.3 67 45-113 296-374 (502)
76 PRK11273 glpT sn-glycerol-3-ph 98.1 2.2E-05 4.9E-10 62.0 9.1 67 38-105 254-322 (452)
77 PRK03893 putative sialic acid 98.1 2.1E-05 4.5E-10 62.3 8.9 57 55-112 293-349 (496)
78 KOG4686 Predicted sugar transp 98.1 1.2E-05 2.7E-10 62.5 7.2 87 26-113 253-339 (459)
79 PRK11195 lysophospholipid tran 98.1 1.7E-05 3.8E-10 61.7 8.2 49 65-114 30-78 (393)
80 PRK11663 regulatory protein Uh 98.1 2.3E-05 4.9E-10 61.7 8.9 63 50-114 36-98 (434)
81 PRK10473 multidrug efflux syst 98.1 2.7E-05 5.9E-10 59.9 9.1 69 43-113 9-77 (392)
82 PRK09705 cynX putative cyanate 98.1 3.5E-05 7.5E-10 59.9 9.7 72 40-113 208-279 (393)
83 PRK10091 MFS transport protein 98.1 2.6E-05 5.6E-10 60.2 8.9 75 38-114 4-78 (382)
84 TIGR00710 efflux_Bcr_CflA drug 98.1 3.3E-05 7.1E-10 58.5 9.3 66 46-112 215-280 (385)
85 TIGR00902 2A0127 phenyl propri 98.1 4.9E-05 1.1E-09 58.7 10.3 74 39-114 207-280 (382)
86 PRK11551 putative 3-hydroxyphe 98.1 3.5E-05 7.5E-10 59.4 9.4 65 46-112 229-293 (406)
87 PRK15403 multidrug efflux syst 98.1 2.9E-05 6.3E-10 61.0 9.0 49 64-113 42-90 (413)
88 PRK10133 L-fucose transporter; 98.1 4.5E-05 9.7E-10 60.6 10.2 67 46-113 267-334 (438)
89 PRK11010 ampG muropeptide tran 98.1 2.5E-05 5.5E-10 62.9 8.8 65 47-112 232-297 (491)
90 TIGR00711 efflux_EmrB drug res 98.1 3.6E-05 7.7E-10 60.5 9.4 66 47-114 12-77 (485)
91 TIGR00879 SP MFS transporter, 98.1 8.5E-06 1.8E-10 62.7 5.7 43 70-113 68-110 (481)
92 cd06174 MFS The Major Facilita 98.1 4.9E-05 1.1E-09 56.1 9.4 75 38-113 176-251 (352)
93 TIGR01272 gluP glucose/galacto 98.0 7.4E-05 1.6E-09 56.9 10.5 74 39-113 142-217 (310)
94 PRK10429 melibiose:sodium symp 98.0 2.8E-05 6E-10 62.1 8.5 74 37-112 231-304 (473)
95 PRK11102 bicyclomycin/multidru 98.0 4.5E-05 9.7E-10 58.0 9.3 66 46-112 203-268 (377)
96 TIGR00892 2A0113 monocarboxyla 98.0 3.7E-05 8E-10 61.1 9.1 56 56-113 38-93 (455)
97 COG2814 AraJ Arabinose efflux 98.0 2.8E-05 6.1E-10 61.8 7.9 75 37-113 211-285 (394)
98 PRK10504 putative transporter; 98.0 5.6E-05 1.2E-09 59.6 9.4 74 39-113 263-336 (471)
99 TIGR00712 glpT glycerol-3-phos 98.0 3.1E-05 6.8E-10 60.9 8.0 66 39-105 253-318 (438)
100 PRK09952 shikimate transporter 98.0 6.3E-05 1.4E-09 59.4 9.5 78 36-114 21-104 (438)
101 PF07690 MFS_1: Major Facilita 98.0 1.9E-05 4E-10 58.9 6.1 70 42-112 211-281 (352)
102 PLN00028 nitrate transmembrane 98.0 5.6E-05 1.2E-09 60.5 9.2 56 48-104 263-318 (476)
103 PRK10091 MFS transport protein 98.0 5.4E-05 1.2E-09 58.4 8.8 66 47-113 209-274 (382)
104 TIGR00792 gph sugar (Glycoside 98.0 1.5E-05 3.2E-10 61.9 5.7 65 47-111 9-77 (437)
105 TIGR00895 2A0115 benzoate tran 98.0 9.1E-05 2E-09 55.9 9.8 72 37-110 250-321 (398)
106 PRK14995 methyl viologen resis 98.0 6.7E-05 1.5E-09 60.2 9.5 74 39-114 8-81 (495)
107 PF13347 MFS_2: MFS/sugar tran 98.0 3E-05 6.5E-10 60.8 7.3 76 37-114 225-300 (428)
108 PRK10077 xylE D-xylose transpo 98.0 2.4E-05 5.1E-10 61.6 6.6 46 68-114 50-95 (479)
109 TIGR00881 2A0104 phosphoglycer 97.9 4.3E-05 9.3E-10 57.2 7.2 67 39-105 218-284 (379)
110 PRK10473 multidrug efflux syst 97.9 0.00013 2.8E-09 56.2 9.8 58 55-113 221-278 (392)
111 PRK03545 putative arabinose tr 97.9 0.00013 2.7E-09 56.4 9.6 64 46-110 214-277 (390)
112 PF01306 LacY_symp: LacY proto 97.9 6.6E-05 1.4E-09 60.1 8.1 70 38-108 8-77 (412)
113 PRK09705 cynX putative cyanate 97.9 5.4E-05 1.2E-09 58.9 7.4 61 52-114 24-84 (393)
114 PRK10429 melibiose:sodium symp 97.9 3E-05 6.4E-10 61.9 6.1 73 38-112 8-85 (473)
115 TIGR00881 2A0104 phosphoglycer 97.9 2.7E-05 5.8E-10 58.3 5.5 52 62-114 19-70 (379)
116 PRK15402 multidrug efflux syst 97.9 0.00016 3.6E-09 55.9 9.8 65 47-112 225-289 (406)
117 PRK09848 glucuronide transport 97.9 3.8E-05 8.3E-10 60.5 6.4 61 47-107 18-81 (448)
118 PRK11663 regulatory protein Uh 97.9 0.00013 2.9E-09 57.3 9.3 62 39-100 245-306 (434)
119 KOG2533 Permease of the major 97.8 3.5E-05 7.7E-10 62.9 5.9 75 23-99 261-335 (495)
120 PTZ00207 hypothetical protein; 97.8 0.00022 4.9E-09 59.4 10.7 75 36-114 27-101 (591)
121 TIGR00903 2A0129 major facilit 97.8 6.7E-05 1.5E-09 58.4 7.2 54 56-111 10-63 (368)
122 PRK09669 putative symporter Ya 97.8 3.5E-05 7.5E-10 60.8 5.6 72 38-110 11-86 (444)
123 TIGR00882 2A0105 oligosacchari 97.8 0.0001 2.2E-09 57.0 8.1 84 27-113 207-293 (396)
124 PRK03633 putative MFS family t 97.8 0.00017 3.6E-09 55.6 9.2 60 51-112 214-273 (381)
125 TIGR00900 2A0121 H+ Antiporter 97.8 0.0002 4.3E-09 53.5 9.4 73 39-112 212-285 (365)
126 TIGR01299 synapt_SV2 synaptic 97.8 0.00013 2.9E-09 62.1 9.3 35 78-113 600-634 (742)
127 TIGR00805 oat sodium-independe 97.8 0.00013 2.9E-09 60.9 8.5 74 38-112 331-407 (633)
128 TIGR00879 SP MFS transporter, 97.8 0.00011 2.5E-09 56.4 7.5 59 53-113 300-358 (481)
129 PRK11102 bicyclomycin/multidru 97.8 6.5E-05 1.4E-09 57.2 6.1 59 54-114 8-66 (377)
130 TIGR00893 2A0114 d-galactonate 97.8 6.1E-05 1.3E-09 56.3 5.8 53 60-113 16-68 (399)
131 TIGR00792 gph sugar (Glycoside 97.7 0.0002 4.3E-09 55.6 8.4 75 37-113 222-296 (437)
132 PRK15075 citrate-proton sympor 97.7 0.00028 6E-09 55.5 9.3 55 59-114 36-96 (434)
133 PRK10642 proline/glycine betai 97.7 0.00028 6E-09 56.5 9.3 77 36-114 15-97 (490)
134 TIGR02718 sider_RhtX_FptX side 97.7 0.00032 6.9E-09 54.1 9.1 67 45-113 216-283 (390)
135 TIGR00896 CynX cyanate transpo 97.7 2.9E-05 6.2E-10 59.0 3.2 55 57-113 20-74 (355)
136 PF11700 ATG22: Vacuole efflux 97.7 0.00036 7.7E-09 56.7 9.4 80 33-114 278-359 (477)
137 PRK09528 lacY galactoside perm 97.7 9.9E-05 2.1E-09 57.5 5.8 62 51-113 237-301 (420)
138 PRK08633 2-acyl-glycerophospho 97.7 0.00029 6.2E-09 61.2 9.2 68 44-112 16-85 (1146)
139 PRK15034 nitrate/nitrite trans 97.7 0.00081 1.8E-08 54.6 11.2 77 37-114 34-110 (462)
140 TIGR00887 2A0109 phosphate:H+ 97.7 0.00033 7.2E-09 56.2 8.9 44 69-113 52-95 (502)
141 PRK10489 enterobactin exporter 97.6 8.5E-05 1.8E-09 57.8 4.7 63 47-111 27-89 (417)
142 PF05631 DUF791: Protein of un 97.6 0.00019 4.1E-09 56.4 6.4 49 66-115 62-110 (354)
143 PRK11128 putative 3-phenylprop 97.6 0.00087 1.9E-08 51.7 9.9 73 39-113 207-279 (382)
144 PRK10077 xylE D-xylose transpo 97.6 0.0005 1.1E-08 54.1 8.5 59 54-114 288-346 (479)
145 PRK11902 ampG muropeptide tran 97.6 0.00068 1.5E-08 52.6 9.2 54 58-112 230-284 (402)
146 PRK09848 glucuronide transport 97.6 0.00042 9.2E-09 54.6 8.0 74 39-113 230-303 (448)
147 TIGR00805 oat sodium-independe 97.5 5.9E-05 1.3E-09 63.0 3.0 81 33-114 28-108 (633)
148 TIGR00806 rfc RFC reduced fola 97.5 0.0007 1.5E-08 55.5 9.0 55 58-113 46-101 (511)
149 TIGR00902 2A0127 phenyl propri 97.5 0.0011 2.4E-08 51.1 9.8 56 47-104 14-69 (382)
150 PRK11128 putative 3-phenylprop 97.5 0.0008 1.7E-08 51.9 8.8 55 47-103 14-68 (382)
151 PF03825 Nuc_H_symport: Nucleo 97.5 0.0015 3.3E-08 51.8 9.8 67 45-112 10-76 (400)
152 TIGR00898 2A0119 cation transp 97.4 0.00023 4.9E-09 56.6 5.0 50 64-114 115-167 (505)
153 PF13347 MFS_2: MFS/sugar tran 97.4 7E-05 1.5E-09 58.8 1.9 64 47-111 11-78 (428)
154 COG2211 MelB Na+/melibiose sym 97.4 0.0011 2.5E-08 53.8 8.9 76 38-114 237-312 (467)
155 PRK08633 2-acyl-glycerophospho 97.4 0.00083 1.8E-08 58.3 8.0 66 47-113 242-308 (1146)
156 KOG0252 Inorganic phosphate tr 97.4 0.00034 7.3E-09 57.1 5.1 46 68-114 79-124 (538)
157 COG2270 Permeases of the major 97.4 0.00068 1.5E-08 54.5 6.8 77 38-115 253-329 (438)
158 KOG1330 Sugar transporter/spin 97.3 0.00035 7.5E-09 56.8 5.0 79 33-113 29-107 (493)
159 TIGR00889 2A0110 nucleoside tr 97.3 0.00077 1.7E-08 53.1 6.8 61 52-114 223-291 (418)
160 TIGR00894 2A0114euk Na(+)-depe 97.3 0.0012 2.6E-08 52.2 7.6 46 67-113 70-115 (465)
161 PRK11043 putative transporter; 97.3 0.004 8.7E-08 48.0 10.1 60 49-110 215-274 (401)
162 PRK10489 enterobactin exporter 97.3 0.0023 5E-08 49.7 8.8 59 53-112 239-297 (417)
163 TIGR00885 fucP L-fucose:H+ sym 97.3 0.004 8.7E-08 49.1 10.2 68 45-113 240-308 (410)
164 PRK09874 drug efflux system pr 97.2 0.0033 7.1E-08 48.2 9.0 63 50-113 232-297 (408)
165 PRK11462 putative transporter; 97.2 0.001 2.3E-08 53.2 6.4 74 37-111 10-86 (460)
166 PF06609 TRI12: Fungal trichot 97.2 0.0019 4.2E-08 54.0 8.1 54 59-114 65-118 (599)
167 KOG0253 Synaptic vesicle trans 97.2 0.0034 7.4E-08 50.6 8.8 77 36-113 325-420 (528)
168 PRK05122 major facilitator sup 97.1 0.0033 7.2E-08 48.3 8.3 60 49-112 228-287 (399)
169 KOG0254 Predicted transporter 97.1 0.0009 2E-08 54.1 5.3 81 33-115 290-370 (513)
170 PRK11902 ampG muropeptide tran 97.1 0.0036 7.9E-08 48.6 8.4 65 44-112 6-76 (402)
171 TIGR00788 fbt folate/biopterin 97.1 0.0042 9.2E-08 49.9 9.0 79 33-114 21-105 (468)
172 PRK06814 acylglycerophosphoeth 97.1 0.005 1.1E-07 53.9 10.1 34 74-108 53-86 (1140)
173 PF00083 Sugar_tr: Sugar (and 97.1 1.3E-05 2.7E-10 62.8 -5.7 84 28-114 241-326 (451)
174 TIGR00892 2A0113 monocarboxyla 97.1 0.0049 1.1E-07 49.0 9.0 60 39-99 243-302 (455)
175 KOG0255 Synaptic vesicle trans 97.1 0.0008 1.7E-08 54.1 4.5 48 66-114 111-158 (521)
176 COG2271 UhpC Sugar phosphate p 97.0 0.002 4.4E-08 51.9 6.3 89 25-114 13-104 (448)
177 COG2814 AraJ Arabinose efflux 97.0 0.011 2.4E-07 47.2 10.3 80 33-114 9-88 (394)
178 PRK12382 putative transporter; 97.0 0.0035 7.6E-08 48.2 7.4 61 49-113 228-288 (392)
179 KOG2504 Monocarboxylate transp 97.0 0.0066 1.4E-07 49.8 9.2 64 37-102 298-361 (509)
180 COG2807 CynX Cyanate permease 97.0 0.0076 1.7E-07 47.9 9.1 71 39-111 210-280 (395)
181 PRK10213 nepI ribonucleoside t 96.9 0.012 2.7E-07 45.8 10.1 68 39-108 218-286 (394)
182 PRK11010 ampG muropeptide tran 96.9 0.0079 1.7E-07 48.5 9.2 68 37-108 12-84 (491)
183 TIGR00883 2A0106 metabolite-pr 96.9 0.0056 1.2E-07 46.0 7.8 27 87-114 49-75 (394)
184 PRK06814 acylglycerophosphoeth 96.9 0.0036 7.7E-08 54.8 7.5 73 38-111 226-298 (1140)
185 TIGR02718 sider_RhtX_FptX side 96.9 0.0068 1.5E-07 46.7 8.3 71 39-111 3-76 (390)
186 PRK11195 lysophospholipid tran 96.9 0.0084 1.8E-07 46.7 8.8 59 52-111 220-278 (393)
187 PRK11462 putative transporter; 96.9 0.011 2.3E-07 47.4 9.4 62 48-111 239-300 (460)
188 PF05977 MFS_3: Transmembrane 96.9 0.015 3.3E-07 47.8 10.2 73 36-113 12-84 (524)
189 COG2223 NarK Nitrate/nitrite t 96.8 0.016 3.6E-07 46.5 9.8 81 32-114 9-89 (417)
190 PRK09669 putative symporter Ya 96.7 0.015 3.2E-07 45.9 8.8 60 51-112 243-302 (444)
191 COG0738 FucP Fucose permease [ 96.7 0.014 3E-07 46.9 8.5 79 35-115 11-89 (422)
192 TIGR00898 2A0119 cation transp 96.6 0.01 2.2E-07 47.2 7.2 34 79-113 361-394 (505)
193 KOG3762 Predicted transporter 96.6 0.0031 6.6E-08 52.4 4.1 60 52-113 26-85 (618)
194 PF06813 Nodulin-like: Nodulin 96.5 0.011 2.4E-07 44.4 6.5 75 36-114 2-76 (250)
195 KOG0254 Predicted transporter 96.4 0.022 4.8E-07 46.0 8.5 39 75-114 91-129 (513)
196 TIGR00903 2A0129 major facilit 96.4 0.042 9.1E-07 42.8 9.5 68 29-104 186-253 (368)
197 TIGR00901 2A0125 AmpG-related 96.3 0.013 2.8E-07 44.4 6.2 48 59-109 10-61 (356)
198 PF03825 Nuc_H_symport: Nucleo 96.2 0.054 1.2E-06 43.0 9.5 67 47-114 217-283 (400)
199 COG2211 MelB Na+/melibiose sym 96.2 0.014 2.9E-07 47.7 5.8 73 38-111 14-89 (467)
200 KOG0637 Sucrose transporter an 96.0 0.0051 1.1E-07 50.1 2.8 95 18-113 12-110 (498)
201 KOG2504 Monocarboxylate transp 96.0 0.02 4.4E-07 46.9 6.3 53 61-114 69-121 (509)
202 KOG2615 Permease of the major 96.0 0.019 4E-07 46.3 5.6 43 71-114 66-108 (451)
203 PRK10054 putative transporter; 96.0 0.025 5.4E-07 44.1 6.3 67 46-113 215-283 (395)
204 PF00083 Sugar_tr: Sugar (and 95.9 0.0017 3.8E-08 50.7 -0.3 41 73-114 46-86 (451)
205 PRK11652 emrD multidrug resist 95.8 0.097 2.1E-06 40.2 9.1 50 55-105 225-274 (394)
206 KOG2563 Permease of the major 95.8 0.05 1.1E-06 44.4 7.6 80 32-113 37-118 (480)
207 PRK15403 multidrug efflux syst 95.8 0.12 2.6E-06 40.5 9.5 66 38-104 219-285 (413)
208 TIGR00880 2_A_01_02 Multidrug 95.7 0.014 3E-07 37.3 3.3 31 82-113 7-37 (141)
209 PF03209 PUCC: PUCC protein; 95.2 0.088 1.9E-06 42.3 7.0 57 58-114 229-285 (403)
210 COG0738 FucP Fucose permease [ 95.1 0.51 1.1E-05 38.1 10.9 65 47-112 246-310 (422)
211 PF05977 MFS_3: Transmembrane 95.1 0.18 3.9E-06 41.5 8.7 66 47-113 228-293 (524)
212 KOG3626 Organic anion transpor 95.1 0.046 1E-06 46.9 5.2 61 40-100 395-456 (735)
213 KOG2325 Predicted transporter/ 95.0 0.046 1E-06 44.9 4.9 91 22-113 19-111 (488)
214 PF01306 LacY_symp: LacY proto 95.0 0.11 2.5E-06 41.7 6.9 78 37-115 220-300 (412)
215 KOG2532 Permease of the major 94.9 0.23 5E-06 40.4 8.6 47 67-114 67-113 (466)
216 PRK11646 multidrug resistance 94.9 0.32 6.9E-06 38.0 9.2 55 56-112 227-282 (400)
217 KOG0569 Permease of the major 94.5 0.069 1.5E-06 43.8 4.8 36 77-113 64-99 (485)
218 PF03137 OATP: Organic Anion T 94.5 0.01 2.3E-07 48.9 0.0 61 40-100 308-369 (539)
219 COG0477 ProP Permeases of the 94.3 0.39 8.5E-06 33.5 7.8 52 59-112 24-77 (338)
220 PF06609 TRI12: Fungal trichot 92.5 0.9 1.9E-05 38.3 8.2 83 30-114 304-390 (599)
221 KOG3574 Acetyl-CoA transporter 91.1 0.21 4.5E-06 40.6 2.8 91 5-109 6-103 (510)
222 KOG0253 Synaptic vesicle trans 90.7 1.2 2.5E-05 36.4 6.8 66 46-112 86-151 (528)
223 KOG2816 Predicted transporter 90.2 0.63 1.4E-05 37.9 5.0 54 59-113 263-317 (463)
224 KOG0252 Inorganic phosphate tr 89.9 0.32 6.9E-06 40.2 3.0 79 35-115 302-389 (538)
225 PF06779 DUF1228: Protein of u 89.9 2.8 6.2E-05 26.4 6.8 50 63-113 17-66 (85)
226 PF06963 FPN1: Ferroportin1 (F 89.9 2.1 4.7E-05 34.6 7.7 54 57-112 278-331 (432)
227 TIGR00788 fbt folate/biopterin 89.6 0.71 1.5E-05 37.1 4.8 49 65-114 280-328 (468)
228 KOG2816 Predicted transporter 89.6 1.6 3.5E-05 35.6 6.9 31 82-113 71-101 (463)
229 KOG2533 Permease of the major 89.5 1.8 3.9E-05 35.6 7.2 46 66-112 74-119 (495)
230 PRK10207 dipeptide/tripeptide 89.2 0.71 1.5E-05 37.4 4.6 57 47-105 279-340 (489)
231 KOG3764 Vesicular amine transp 88.3 0.57 1.2E-05 38.1 3.4 47 67-114 100-146 (464)
232 PF11700 ATG22: Vacuole efflux 87.4 1.7 3.7E-05 35.4 5.7 36 76-112 73-108 (477)
233 KOG4332 Predicted sugar transp 87.0 0.11 2.5E-06 40.6 -1.2 53 60-113 59-111 (454)
234 KOG4830 Predicted sugar transp 85.4 1.2 2.6E-05 34.7 3.6 67 37-106 18-93 (412)
235 TIGR01272 gluP glucose/galacto 83.4 9.1 0.0002 29.0 7.7 38 73-111 264-301 (310)
236 COG2807 CynX Cyanate permease 83.3 2.9 6.3E-05 33.6 5.1 51 63-114 37-87 (395)
237 COG5505 Predicted integral mem 80.5 2.6 5.5E-05 33.2 3.7 63 4-73 184-246 (384)
238 TIGR01301 GPH_sucrose GPH fami 80.2 14 0.0003 30.4 8.1 80 30-110 251-342 (477)
239 COG2270 Permeases of the major 80.1 2.9 6.3E-05 34.1 4.1 55 56-111 34-95 (438)
240 PF05978 UNC-93: Ion channel r 77.4 21 0.00046 24.8 7.5 46 68-114 32-77 (156)
241 KOG2563 Permease of the major 74.7 19 0.00041 29.8 7.3 66 39-106 268-333 (480)
242 COG5336 Uncharacterized protei 73.6 3.8 8.3E-05 27.3 2.6 23 90-112 59-81 (116)
243 TIGR00769 AAA ADP/ATP carrier 71.7 51 0.0011 27.1 9.2 71 36-112 6-82 (472)
244 PF03137 OATP: Organic Anion T 71.4 1.3 2.8E-05 36.7 0.0 63 51-114 16-78 (539)
245 KOG0255 Synaptic vesicle trans 71.1 42 0.0009 26.9 8.6 77 28-113 311-389 (521)
246 COG3086 RseC Positive regulato 71.0 12 0.00027 26.1 4.7 10 37-46 72-81 (150)
247 PF09527 ATPase_gene1: Putativ 70.5 14 0.00031 20.8 4.3 29 84-112 11-39 (55)
248 PF05232 BTP: Bacterial Transm 67.8 24 0.00051 21.1 7.2 37 68-104 29-65 (67)
249 PF03092 BT1: BT1 family; Int 66.0 13 0.00029 29.6 4.8 52 60-113 12-68 (433)
250 KOG4686 Predicted sugar transp 64.6 0.71 1.5E-05 36.5 -2.7 47 60-106 66-112 (459)
251 PRK09584 tppB putative tripept 63.7 48 0.001 26.9 7.6 66 45-114 280-360 (500)
252 PF01770 Folate_carrier: Reduc 63.1 33 0.00072 27.8 6.5 56 57-113 23-80 (412)
253 PF03605 DcuA_DcuB: Anaerobic 62.0 56 0.0012 26.2 7.4 17 2-18 190-206 (364)
254 PF05915 DUF872: Eukaryotic pr 60.4 47 0.001 22.0 6.3 22 32-53 37-58 (115)
255 KOG2615 Permease of the major 58.4 40 0.00087 27.6 6.1 66 38-103 261-327 (451)
256 KOG1330 Sugar transporter/spin 57.1 6 0.00013 32.7 1.3 41 59-99 266-309 (493)
257 PF08999 SP_C-Propep: Surfacta 56.8 20 0.00042 22.7 3.3 17 1-17 1-17 (93)
258 PF04341 DUF485: Protein of un 56.3 48 0.001 20.8 5.6 42 28-69 7-48 (91)
259 PF06963 FPN1: Ferroportin1 (F 56.1 1.1E+02 0.0024 24.9 9.0 53 60-113 25-77 (432)
260 PF12670 DUF3792: Protein of u 54.7 58 0.0013 21.3 9.0 67 35-108 3-69 (116)
261 TIGR00880 2_A_01_02 Multidrug 53.2 51 0.0011 20.2 8.8 34 77-111 91-124 (141)
262 PF11872 DUF3392: Protein of u 50.8 64 0.0014 21.2 5.2 63 30-99 43-105 (106)
263 PRK11375 allantoin permease; P 49.4 1.4E+02 0.003 24.5 8.1 35 67-102 54-88 (484)
264 PF02990 EMP70: Endomembrane p 46.1 41 0.00089 27.8 4.6 23 77-99 297-319 (521)
265 KOG3764 Vesicular amine transp 45.4 11 0.00025 30.8 1.2 77 24-103 259-335 (464)
266 PRK04288 antiholin-like protei 43.8 1.2E+02 0.0026 22.8 6.3 23 29-51 86-108 (232)
267 COG1953 FUI1 Cytosine/uracil/t 42.6 1.5E+02 0.0032 24.9 7.1 34 67-100 68-101 (497)
268 PRK03612 spermidine synthase; 42.4 2E+02 0.0043 23.8 10.3 62 35-99 15-76 (521)
269 PRK11380 hypothetical protein; 41.6 1.1E+02 0.0024 24.4 6.0 37 5-41 2-40 (353)
270 PF03209 PUCC: PUCC protein; 39.7 42 0.00092 27.2 3.6 46 65-112 7-57 (403)
271 PRK10711 hypothetical protein; 39.4 1.6E+02 0.0034 22.1 6.4 23 29-51 81-103 (231)
272 PF04172 LrgB: LrgB-like famil 38.7 1.6E+02 0.0034 21.7 6.6 21 30-50 71-91 (215)
273 TIGR00659 conserved hypothetic 38.7 1.6E+02 0.0036 21.9 6.5 23 29-51 80-102 (226)
274 KOG0637 Sucrose transporter an 38.4 88 0.0019 26.1 5.3 77 31-108 273-366 (498)
275 PF13937 DUF4212: Domain of un 37.8 1E+02 0.0022 19.2 7.1 70 33-104 4-76 (81)
276 PF13748 ABC_membrane_3: ABC t 35.6 1.6E+02 0.0034 22.2 5.8 37 29-66 2-38 (237)
277 PF11947 DUF3464: Protein of u 35.1 1.6E+02 0.0034 20.6 6.0 71 26-99 51-122 (153)
278 COG1346 LrgB Putative effector 33.9 1.4E+02 0.0029 22.5 5.2 24 29-52 83-106 (230)
279 KOG3626 Organic anion transpor 33.4 28 0.0006 30.4 1.8 77 37-114 96-172 (735)
280 PF02990 EMP70: Endomembrane p 33.2 2.1E+02 0.0045 23.7 6.8 32 68-99 362-393 (521)
281 TIGR02230 ATPase_gene1 F0F1-AT 32.8 1.2E+02 0.0025 19.8 4.2 13 59-71 61-73 (100)
282 PRK08601 NADH dehydrogenase su 31.8 2.7E+02 0.0058 23.3 7.2 68 32-99 402-469 (509)
283 COG1963 Uncharacterized protei 30.5 52 0.0011 23.0 2.4 35 19-53 113-147 (153)
284 COG1271 CydA Cytochrome bd-typ 30.3 1.3E+02 0.0029 24.8 5.1 50 60-110 345-394 (457)
285 KOG3098 Uncharacterized conser 29.5 2.8E+02 0.0062 22.8 6.9 45 68-113 273-321 (461)
286 KOG3827 Inward rectifier K+ ch 29.3 38 0.00081 27.4 1.8 42 31-72 57-98 (400)
287 COG3162 Predicted membrane pro 27.5 1.8E+02 0.004 19.0 4.4 42 28-69 15-56 (102)
288 PF11283 DUF3084: Protein of u 27.0 63 0.0014 20.2 2.1 13 94-106 17-32 (79)
289 TIGR03733 lanti_perm_MutG lant 26.8 2.5E+02 0.0055 20.4 8.2 45 67-112 123-167 (248)
290 smart00019 SF_P Pulmonary surf 26.0 40 0.00086 23.8 1.2 18 1-18 1-18 (191)
291 COG2119 Predicted membrane pro 25.4 2.7E+02 0.0059 20.3 7.5 36 77-113 138-173 (190)
292 PRK15462 dipeptide/tripeptide 25.3 3.9E+02 0.0084 22.1 7.0 37 75-112 140-176 (493)
293 PF02133 Transp_cyt_pur: Perme 24.0 3.2E+02 0.007 21.5 6.3 40 67-107 36-75 (440)
294 TIGR00924 yjdL_sub1_fam amino 23.9 3.8E+02 0.0083 21.5 7.5 23 47-69 282-304 (475)
295 KOG0476 Cl- channel CLC-2 and 22.6 1.6E+02 0.0034 26.4 4.3 58 32-89 279-343 (931)
296 PF07857 DUF1632: CEO family ( 22.6 2.7E+02 0.0059 21.0 5.3 21 48-68 189-209 (254)
297 COG1280 RhtB Putative threonin 22.4 3E+02 0.0065 19.7 7.6 62 37-98 112-173 (208)
298 KOG2325 Predicted transporter/ 21.7 2.5E+02 0.0054 23.4 5.2 47 33-79 258-304 (488)
299 PRK02237 hypothetical protein; 21.0 2.6E+02 0.0057 18.5 6.8 28 73-100 56-83 (109)
300 KOG4473 Uncharacterized membra 20.2 3.1E+02 0.0068 20.6 5.0 45 55-107 178-222 (247)
No 1
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.57 E-value=1.8e-14 Score=115.96 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=84.6
Q ss_pred CCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 24 RGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG----QSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 24 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg----~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
...+..+..-+|||+++.++.++++|+++||++..-+..|++.+++ ++++++......+....+..+++|||+|||
T Consensus 8 ~~~~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr 87 (498)
T COG3104 8 ENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR 87 (498)
T ss_pred cccccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666799999999999999999999999999999998887 999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHh
Q 048637 100 FLGRYQTIFLLLLFMS 115 (116)
Q Consensus 100 ~iGRr~~i~~~~il~~ 115 (116)
++|+||++..|+++++
T Consensus 88 ~LG~~~tI~lGail~~ 103 (498)
T COG3104 88 VLGTRRTIVLGAILMA 103 (498)
T ss_pred hcchhHHHHHHHHHHH
Confidence 9999999999998764
No 2
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.51 E-value=1.2e-13 Score=111.21 Aligned_cols=83 Identities=27% Similarity=0.345 Sum_probs=78.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
+++|||.++.+++++++|+++||++..+++.|+++.+|++..++..+...+.+..++.++++|+++||++||||++..+.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999559999999998
Q ss_pred HHH
Q 048637 112 LFM 114 (116)
Q Consensus 112 il~ 114 (116)
++.
T Consensus 89 ~~~ 91 (489)
T PRK10207 89 IVL 91 (489)
T ss_pred HHH
Confidence 764
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.36 E-value=5.2e-12 Score=102.34 Aligned_cols=81 Identities=26% Similarity=0.451 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+|||.++.+++.+++++.++|++..++|.|+++.+|+++.++..+...+.+..+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999944999999988765
Q ss_pred H
Q 048637 114 M 114 (116)
Q Consensus 114 ~ 114 (116)
.
T Consensus 86 ~ 86 (493)
T PRK15462 86 M 86 (493)
T ss_pred H
Confidence 4
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.32 E-value=1.4e-11 Score=98.58 Aligned_cols=83 Identities=29% Similarity=0.329 Sum_probs=76.8
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGP--LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~ 109 (116)
..+|||.++..++.+++|+.++|++..++|.|++++ +|++..++..+...+.+...++++++|+++||++|||+++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 356899999999999999999999999999999987 999999999999999999999999999999994499999998
Q ss_pred HHHHH
Q 048637 110 LLLFM 114 (116)
Q Consensus 110 ~~il~ 114 (116)
+.++.
T Consensus 85 ~~~~~ 89 (475)
T TIGR00924 85 GGIVL 89 (475)
T ss_pred HHHHH
Confidence 88654
No 5
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.24 E-value=8.8e-11 Score=94.69 Aligned_cols=81 Identities=27% Similarity=0.406 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+|+|.++.+++.+++++.++|++..+++.|+++++|++..++..+...+.......++++|+++||++|||+++..+.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999988888887777788889999999944999999988765
Q ss_pred H
Q 048637 114 M 114 (116)
Q Consensus 114 ~ 114 (116)
.
T Consensus 98 ~ 98 (500)
T PRK09584 98 L 98 (500)
T ss_pred H
Confidence 4
No 6
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.99 E-value=2.8e-09 Score=85.22 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
+.|.++.++++++.+...+...++....+|++..|+|+|++..+|++..++........+...++.+++|+++|| +|||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr 316 (490)
T PRK10642 238 KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRR 316 (490)
T ss_pred cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccH
Confidence 346666777777777666666666778899999999999998899999888777777778888899999999999 5999
Q ss_pred HHHHHHHH
Q 048637 105 QTIFLLLL 112 (116)
Q Consensus 105 ~~i~~~~i 112 (116)
+++..+.+
T Consensus 317 ~~~~~~~~ 324 (490)
T PRK10642 317 PFVILGSV 324 (490)
T ss_pred HHHHHHHH
Confidence 99887764
No 7
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=98.98 E-value=2.4e-09 Score=88.31 Aligned_cols=97 Identities=54% Similarity=0.773 Sum_probs=90.9
Q ss_pred CcccccCCCccccc---ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHH
Q 048637 18 DDCVDYRGRPVHRA---NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGA 94 (116)
Q Consensus 18 ~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G 94 (116)
++..|++..|..+. .+..|+++.+.++.+.+++.++|++..++..|++..+|.+...+...+..+.+.....++++|
T Consensus 15 ~~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~ 94 (571)
T KOG1237|consen 15 FTSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA 94 (571)
T ss_pred cceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 36789999888776 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchHHHHHHHHHHH
Q 048637 95 FVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 95 ~LaDr~iGRr~~i~~~~il~ 114 (116)
++||.|+||.+++.+++++.
T Consensus 95 ~laD~f~gry~tI~~~s~i~ 114 (571)
T KOG1237|consen 95 FLADSFLGRYFTINIGSLIS 114 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998764
No 8
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.84 E-value=3.2e-08 Score=74.56 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
..+.++..+++++.++.......+....++....++|.|+++++|.+..++........+...++.+++|+++|| +|||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~ 285 (394)
T TIGR00883 207 RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRR 285 (394)
T ss_pred cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchH
Confidence 345556666666667777777777788888888999999988899999999988888899999999999999999 5999
Q ss_pred HHHHHHH
Q 048637 105 QTIFLLL 111 (116)
Q Consensus 105 ~~i~~~~ 111 (116)
+.+..+.
T Consensus 286 ~~~~~~~ 292 (394)
T TIGR00883 286 PVLIIFT 292 (394)
T ss_pred HHHHHHH
Confidence 9876443
No 9
>PRK09952 shikimate transporter; Provisional
Probab=98.84 E-value=2.3e-08 Score=78.94 Aligned_cols=85 Identities=22% Similarity=0.129 Sum_probs=67.3
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
|..+.++++++.....+...++....+|....|+|.|+++.+|++......+..+..++..++.+++|+++|| +||||+
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~ 318 (438)
T PRK09952 240 PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRV 318 (438)
T ss_pred CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHH
Confidence 4444455667766666666777788899999999999999999998876666666777778888999999999 599999
Q ss_pred HHHHHH
Q 048637 107 IFLLLL 112 (116)
Q Consensus 107 i~~~~i 112 (116)
+..+.+
T Consensus 319 ~~~~~~ 324 (438)
T PRK09952 319 YITGAL 324 (438)
T ss_pred HHHHHH
Confidence 887754
No 10
>PRK10054 putative transporter; Provisional
Probab=98.83 E-value=2.7e-08 Score=77.60 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+|+.+......++...+++....++|.|+++++|++..+.......+.+...++.+++|+++|| +|||+++..+.++
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~ 82 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITA 82 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHH
Confidence 35667777777888888999999999999999999999999999999999999999999999999 5999999877754
No 11
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.76 E-value=7.2e-08 Score=74.54 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.++......++....+.....++|.|+++++|+++.+...+.....+...++.+++|+++|| +|||+.++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~ 75 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWII 75 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 34555556666667777788899999999999999999999999999999999999999999 59999998654
No 12
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.76 E-value=6.5e-08 Score=75.41 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
..+......++....++....++|.|+++++|+++.+...+.....+...++.++.|+++|| +||||++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~ 83 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWII 83 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHH
Confidence 44555556666667777788999999999999999999999999999999999999999999 59999987644
No 13
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.76 E-value=6.3e-08 Score=76.06 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=63.8
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
|.++.+| +++.....++........+|....|+|.|+.+..|++..++.....+...+..++.++.|+++|| +|||++
T Consensus 234 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~ 311 (432)
T PRK10406 234 SLKGLWR-NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTS 311 (432)
T ss_pred cHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHH
Confidence 4555554 44444444444445567788899999999998899999888877777777778888899999999 599998
Q ss_pred HHHHHH
Q 048637 107 IFLLLL 112 (116)
Q Consensus 107 i~~~~i 112 (116)
+.++.+
T Consensus 312 ~~~~~~ 317 (432)
T PRK10406 312 MLCFGS 317 (432)
T ss_pred HHHHHH
Confidence 877654
No 14
>PRK12382 putative transporter; Provisional
Probab=98.73 E-value=8e-08 Score=73.96 Aligned_cols=75 Identities=11% Similarity=-0.032 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+.++...+..+......+.....+|.|+.+++|.++.+.......+.+...++.+++|+++|| +||||++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~ 89 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGML 89 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHH
Confidence 444555555555566666777788889988999999999999999999999999999999999 599999987654
No 15
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.70 E-value=1e-07 Score=73.39 Aligned_cols=77 Identities=16% Similarity=0.004 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+++.......+.......+....+|.|+.+++|.+..+...+...+.+...++.++.|+++|| +||||++..+.++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~ 90 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCG 90 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHH
Confidence 3556666666677777777788899999999999999999999999999999999999999999 5999999987653
No 16
>PRK15075 citrate-proton symporter; Provisional
Probab=98.68 E-value=1.5e-07 Score=73.96 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
+++.....+.........++....|+|.|+++..|++..++........+...++.+++|+++|| +|||+++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~ 311 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFT 311 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 44444444444455666788888999999998899999988888888888888999999999999 59999987754
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.61 E-value=4.6e-07 Score=68.88 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=66.6
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 29 HRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
++..+.+|+.+....+.........+......|. +.+++|++..+.........+...++.++.|+++|| +|||+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~ 81 (405)
T TIGR00891 4 RHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMV 81 (405)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 3344666777777777777777777766666664 456799999999999999999999999999999999 59999999
Q ss_pred HHHHH
Q 048637 109 LLLLF 113 (116)
Q Consensus 109 ~~~il 113 (116)
.+.++
T Consensus 82 ~~~~~ 86 (405)
T TIGR00891 82 TSIVL 86 (405)
T ss_pred HHHHH
Confidence 87654
No 18
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.61 E-value=2.4e-07 Score=70.02 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+..+...+......+....++|.++++++|+++.+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 77 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLL 77 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence 344445555566777777888888888999999999999999999999999999999999 59999998887653
No 19
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.60 E-value=4.3e-07 Score=70.93 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=67.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
++.+| +..+...++...+++.+..+++.|+++++|.+..+.........+...+..+++|+++|| +|||+++..+.+
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~ 84 (400)
T PRK11646 8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGML 84 (400)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHH
Confidence 44555 555566677788888889999999999999999999999999999999999999999999 599999998776
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
+.
T Consensus 85 ~~ 86 (400)
T PRK11646 85 MR 86 (400)
T ss_pred HH
Confidence 53
No 20
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.59 E-value=5.6e-07 Score=56.07 Aligned_cols=63 Identities=30% Similarity=0.278 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 50 RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 50 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
......+..|++.|+++ .|+++.+...+..+.-++..+++|+.|+++||+ ||++.+..+...+
T Consensus 13 f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 33444566889999985 999999999999999999999999999999995 9888888777654
No 21
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=74.65 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-chHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-GRYQTIFLLLL 112 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-GRr~~i~~~~i 112 (116)
|.+|++.+....-.+.=|++..+.|.|+.+..|++..++......+=.+..++++++||+|||++ |||....+.+.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~ 328 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM 328 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677877778888888999999999999999999999999999999999999999999999999 88876655543
No 22
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.58 E-value=4e-07 Score=72.28 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
.++......++....+++...++|.|+++..|++..++........+...++.+++|+++|| +|||+.+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~ 330 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVAC 330 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHH
Confidence 45666666666677777888899999999999999999988888888999999999999999 5998876554
No 23
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.57 E-value=4.4e-07 Score=69.89 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.|+++..++..+...........++|.|+. ++|.+..+...+...+.+...++.++.|+++|| +|||+++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~ 80 (381)
T PRK03633 3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHH
Confidence 34577888888888888888888899999998 479999999999999999999999999999999 5999999887765
Q ss_pred H
Q 048637 114 M 114 (116)
Q Consensus 114 ~ 114 (116)
.
T Consensus 81 ~ 81 (381)
T PRK03633 81 F 81 (381)
T ss_pred H
Confidence 3
No 24
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.53 E-value=1.2e-06 Score=67.85 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+++++..+..+.+.......++....++|.|+++++|++..++........+...++.+++|+++|| +|||+.+..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~ 290 (393)
T PRK15011 212 RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAV 290 (393)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 3344444444333344444555566789999998999999988887777777778889999999999 599998876543
No 25
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.52 E-value=7.4e-07 Score=69.29 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.||++.......+......+....+++.|++ ++|.++.+.......+.+...++.+++|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 34566767766666667777777778888884 589999999999999999999999999999999 5999999877654
No 26
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.51 E-value=1.3e-06 Score=68.04 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=67.7
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
..++..|.+|+.+........+.....|.....+|.+. +++|.++.+.............++.++.|+++|| +|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~ 87 (394)
T PRK10213 10 GADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYV 87 (394)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHH
Confidence 34556677888766666655555556666666677655 4689999999999999999999999999999999 599999
Q ss_pred HHHHHHHH
Q 048637 107 IFLLLLFM 114 (116)
Q Consensus 107 i~~~~il~ 114 (116)
+..+.++.
T Consensus 88 ~~~~~~~~ 95 (394)
T PRK10213 88 VILFAVLL 95 (394)
T ss_pred HHHHHHHH
Confidence 99887654
No 27
>PRK10504 putative transporter; Provisional
Probab=98.50 E-value=1.1e-06 Score=69.35 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.++......++.....+.+...+|.|.. ++|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~ 84 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVL 84 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence 445666666677777788888888999886 599999999888888888989999999999999 5999999877544
No 28
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.48 E-value=1.4e-06 Score=68.95 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCCccccccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 048637 24 RGRPVHRANS-GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG 102 (116)
Q Consensus 24 ~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG 102 (116)
+..|..+..+ .+++.+.......+............+| ++.+++|.+..+.........+...++.+++|+++|| +|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g 83 (496)
T PRK03893 6 QNIPWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YG 83 (496)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence 3344444443 3445444444444555555554544444 4556799999999999999999999999999999999 59
Q ss_pred hHHHHHHHHHH
Q 048637 103 RYQTIFLLLLF 113 (116)
Q Consensus 103 Rr~~i~~~~il 113 (116)
||+++..+.++
T Consensus 84 ~r~~~~~~~~~ 94 (496)
T PRK03893 84 RRLAMVISIVL 94 (496)
T ss_pred cHHHHHHHHHH
Confidence 99999887654
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.48 E-value=3.3e-07 Score=72.75 Aligned_cols=92 Identities=14% Similarity=-0.006 Sum_probs=60.4
Q ss_pred cCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhh
Q 048637 16 TVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGT----GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPL 91 (116)
Q Consensus 16 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~ 91 (116)
..+.+.||.+.-.++..+ |..+..+.+.+......|.. ...+| .+.+++|++..+...+...+.....++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~y~~r~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~ 82 (467)
T PRK09556 7 VRKPTLDLPLEVQRKMWF---KPFMQSYLVVFIGYLTMYLIRKNFKAAQN-DMISTYGLSTTELGMIGLGFSITYGVGKT 82 (467)
T ss_pred cCCCccCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcChhhhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 334566775544444333 33333333333333333332 22234 35567999999999999999999999999
Q ss_pred HHHHhhhcccchHHHHHHHHH
Q 048637 92 LGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 92 ~~G~LaDr~iGRr~~i~~~~i 112 (116)
++|+++|| +|||+++..+.+
T Consensus 83 ~~G~l~Dr-~g~r~~l~~~~~ 102 (467)
T PRK09556 83 LVGYYADG-KNTKQFLPFLLI 102 (467)
T ss_pred hhhhHhhc-cCccchHHHHHH
Confidence 99999999 599999866543
No 30
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.45 E-value=1.6e-06 Score=67.93 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+|+.++...+...++..-...+.... ..+++++|++..+.......+.+...++.+++|+++|| +|||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHH
Confidence 45555555544444444444443334 47888999999999999999999999999999999999 59999998877653
No 31
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.44 E-value=1.7e-06 Score=68.00 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.......++....++....++|.|+++..|+++.++........+...++.+++|+++|| +|||+++.++.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~ 330 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLIL 330 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHH
Confidence 3444445555666777888899999999999999999999988999999999999999999 5999998877654
No 32
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.2e-06 Score=69.83 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
..|.....-+..-.++-+++.++|.|++++.|+++.++......+.....+.=+++|+|||| +|.+|+..+..+.+
T Consensus 219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~ 294 (417)
T COG2223 219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGM 294 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHH
Confidence 34555555556666777888999999999999999999999999999999999999999999 59888887766543
No 33
>PRK03699 putative transporter; Provisional
Probab=98.43 E-value=2.8e-06 Score=65.78 Aligned_cols=75 Identities=13% Similarity=0.005 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+.++......++....++.+..|+|.|+++++|+++.++........+...++.+++|+++|| +|||+++....+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~ 279 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAG 279 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 344444444455566677888999999998999999999999888888999999999999999 599998886654
No 34
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.42 E-value=1.5e-06 Score=66.01 Aligned_cols=72 Identities=24% Similarity=0.180 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 41 FIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 41 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.............+....++|.|++++.|++..++........+...++.++.|+++|| +|||+.+..+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~ 313 (405)
T TIGR00891 242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLA 313 (405)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHH
Confidence 33333344445555677789999998999999999999999999999999999999999 5999998876543
No 35
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.42 E-value=2.3e-06 Score=63.77 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.+............+|.++.+++|.+..+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~ 72 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhh
Confidence 344455555566667768888999999999999999999999999999999999 59999998887654
No 36
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.42 E-value=1.6e-06 Score=66.72 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+|.++.......+...........+|.+. +++|.++.+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~ 82 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence 445566566555555555554444555554 5799999999999999999999999999999999 5999999887654
No 37
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.41 E-value=2.8e-06 Score=67.96 Aligned_cols=80 Identities=11% Similarity=-0.044 Sum_probs=60.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.+++++.+.......++.....+....++| ++.+++|++..+...+...+.+...++.+++|+++|| +|||+++..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~ 108 (476)
T PLN00028 31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLL 108 (476)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHH
Confidence 344566666666666666666665554444 4566899999999888888888888899999999999 59999998876
Q ss_pred HH
Q 048637 112 LF 113 (116)
Q Consensus 112 il 113 (116)
++
T Consensus 109 ~~ 110 (476)
T PLN00028 109 ML 110 (476)
T ss_pred HH
Confidence 54
No 38
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.40 E-value=1.9e-06 Score=65.39 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHH-HHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWS-GTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~-~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.++...+..++....++...+++|.|++. +|+++.+...+..... +...++.+++|+++|| +|||+.+..+.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~ 284 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 35555555566678888888999999987 8999999877776555 5677899999999999 5999998877764
No 39
>TIGR00895 2A0115 benzoate transport.
Probab=98.40 E-value=2.9e-06 Score=64.14 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+++.+...+...+......+....++|. +.+++|.+..+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~ 91 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHH
Confidence 3454555555555554445444444444 455799999999999999999999999999999999 5999999887754
No 40
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.39 E-value=1.7e-06 Score=66.94 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITY--LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+.+.++..+.+...+...++....+.|.+ +.+++|.++.+.......+.+...++.++.|+++|| +||||++..+.+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~ 86 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVA 86 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 45666666666666666555555555444 336799999999999999999999999999999999 599999988765
Q ss_pred H
Q 048637 113 F 113 (116)
Q Consensus 113 l 113 (116)
+
T Consensus 87 ~ 87 (406)
T PRK15402 87 F 87 (406)
T ss_pred H
Confidence 4
No 41
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.39 E-value=4.5e-07 Score=75.97 Aligned_cols=63 Identities=29% Similarity=0.534 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+||++.+.+..|+++.+|++.+.+..+...+....++.++++|+++|+++||++++.++++++
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~ 64 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVY 64 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988764
No 42
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.38 E-value=2.2e-06 Score=64.83 Aligned_cols=65 Identities=15% Similarity=0.016 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
..+....+......++|.|+++++|.+..+...+...+.+...+..++.|+++|| +||||.++..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~ 69 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILF 69 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH
Confidence 3455566677777889999999999999999999999999999999999999999 5998876543
No 43
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.38 E-value=3e-06 Score=65.73 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+.+++.++...+..+......+. ..++..++.+++|.++.+.......+.+...++.+++|+++|| +|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 34445555444444444444443 3444455667899999999999999999999999999999999 599999998876
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
+.
T Consensus 92 ~~ 93 (426)
T PRK12307 92 AY 93 (426)
T ss_pred HH
Confidence 53
No 44
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.38 E-value=4.3e-06 Score=64.84 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=59.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHh-hhhhHHHHhhhcccc
Q 048637 24 RGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQ-LLPLLGAFVGDSFLG 102 (116)
Q Consensus 24 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~-~~~~~~G~LaDr~iG 102 (116)
|..|.....+...++....+...+...........+++.|+++++|.++++.....+.+..... +.++++|+ +|| +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g 79 (393)
T PRK15011 2 HNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RG 79 (393)
T ss_pred CCCcccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-cc
Confidence 3445444444444455555566777777877888899999999999999999888766555444 45566666 999 59
Q ss_pred hHHHHHHH
Q 048637 103 RYQTIFLL 110 (116)
Q Consensus 103 Rr~~i~~~ 110 (116)
|||.++..
T Consensus 80 ~r~~~~~~ 87 (393)
T PRK15011 80 DRKSLIVF 87 (393)
T ss_pred chhHHHHH
Confidence 99875443
No 45
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.36 E-value=4.3e-06 Score=67.64 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=79.1
Q ss_pred cchhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHH
Q 048637 3 ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKW 82 (116)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~ 82 (116)
||++|--.-+.+-+++....-+..|-++.+++ .+++.++...++++.+++.+..|+|+|+++++|++..+......+=
T Consensus 226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts--~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP 303 (466)
T KOG2532|consen 226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTS--PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALP 303 (466)
T ss_pred CCHHHHHHHHhcccccccCCCCCCCHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHH
Confidence 56666666666655433222256677777776 4678888889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHhhhcc
Q 048637 83 SGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 83 ~~~~~~~~~~~G~LaDr~ 100 (116)
.+++.+..+++|++|||.
T Consensus 304 ~l~~~~~k~~~g~lsD~l 321 (466)
T KOG2532|consen 304 FLAMAIVKFVAGQLSDRL 321 (466)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999995
No 46
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.36 E-value=2.5e-06 Score=69.04 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.|...++.++...+|.++..++|.|++.. ++.........+..++..+..|++|+|||| +|++|++.++.+.
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~--~~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~ 325 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQ--FPDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIF 325 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHH
Confidence 45566666666667777777999998874 455555555667788889999999999999 5999999888764
No 47
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.35 E-value=3.2e-06 Score=65.13 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=64.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
|.+|..+.......+.+....+......|.+. +++|.++.+...+.....+...++.++.|+++|| +|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence 35566666666677777776766666666665 5699999999999999999999999999999999 599999998875
Q ss_pred H
Q 048637 113 F 113 (116)
Q Consensus 113 l 113 (116)
+
T Consensus 89 ~ 89 (406)
T PRK11551 89 L 89 (406)
T ss_pred H
Confidence 4
No 48
>PRK10133 L-fucose transporter; Provisional
Probab=98.33 E-value=5e-06 Score=66.00 Aligned_cols=80 Identities=9% Similarity=-0.034 Sum_probs=65.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+++..++.....+.+............+|.+ ++.+|.+..+.......+.+...++.++.|+++|| +|||+++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 4455566666666666666666666777776 77899999999999999999999999999999999 599999999886
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
+.
T Consensus 100 ~~ 101 (438)
T PRK10133 100 LY 101 (438)
T ss_pred HH
Confidence 54
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.33 E-value=2.1e-06 Score=67.88 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=45.5
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
...|+.+. |++..+...+...+.+...++.+++|+++|| +|||++++.+.++
T Consensus 51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~ 102 (452)
T PRK11273 51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLIL 102 (452)
T ss_pred hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHH
Confidence 33466666 9999999999999999999999999999999 5999999888754
No 50
>PRK03699 putative transporter; Provisional
Probab=98.33 E-value=4.8e-06 Score=64.51 Aligned_cols=78 Identities=6% Similarity=-0.054 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+++|-.+.+.+..+......+.....+|... +++|+++.+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 4556666666666666666666666677755 5799999999999999999999999999999999 5999999887754
No 51
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.29 E-value=8.7e-06 Score=62.49 Aligned_cols=74 Identities=16% Similarity=-0.055 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHH-----HHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATA-----AQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a-----~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.........++....++....++|.|.++ +|.+..+. ..+..+..+...++.++.|+++|| +|||+++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHH
Confidence 34444445566667777777889999864 88886553 556677778888899999999999 599999998775
Q ss_pred H
Q 048637 113 F 113 (116)
Q Consensus 113 l 113 (116)
+
T Consensus 93 ~ 93 (408)
T PRK09874 93 G 93 (408)
T ss_pred H
Confidence 4
No 52
>PRK11043 putative transporter; Provisional
Probab=98.29 E-value=5.4e-06 Score=64.01 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHH--hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 49 ERFAFCGTGSNLITY--LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 49 ~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
....++....++|.+ +.+++|.++.+......++.+...++.+++|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 80 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSL 80 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHH
Confidence 444556666777776 667899999999999999999999999999999999 5999999887654
No 53
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.28 E-value=8.7e-06 Score=60.90 Aligned_cols=68 Identities=18% Similarity=-0.020 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
+.++......++....++....++|.|+++.+|.++.++........+...++.+++|+++|| +|||+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~ 282 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-Hhhcc
Confidence 345555566667777788888899999999999999999988889999999999999999999 59996
No 54
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.27 E-value=5.7e-06 Score=62.72 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+++.++...+...............+|.+ .+++|.+..+...+.....+...++.++.|+++|| +|||+++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~ 79 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFI 79 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence 44445555455555555554444455554 45799999999999999999999999999999999 5999999887754
No 55
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.27 E-value=1.7e-05 Score=60.24 Aligned_cols=71 Identities=15% Similarity=-0.023 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-hHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-RYQTIFLLL 111 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-Rr~~i~~~~ 111 (116)
.+.......+....++....++|.|+++ .|++..++........+...++.++.|+++|| +| ||+.+..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~ 270 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHH
Confidence 3444444455666778888899999975 69999999999999999999999999999999 65 555555543
No 56
>PRK03545 putative arabinose transporter; Provisional
Probab=98.27 E-value=8.7e-06 Score=62.81 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
++.............|.....+|. +.+++|.++.+.......+.+...++.++.|+++|| +||||++..+.++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 83 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVL 83 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence 344333334433444444344555 455799999999999999999999999999999999 5999999888654
No 57
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.26 E-value=2.1e-06 Score=64.29 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
..|....+ ..++.+++|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++.
T Consensus 18 ~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~ 78 (377)
T TIGR00890 18 YVYTWTLL-APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILY 78 (377)
T ss_pred HHhhhhhH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHH
Confidence 34544444 455566899999999999999999999999999999999 59999999887653
No 58
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.26 E-value=2.6e-06 Score=72.33 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=46.9
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 58 SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 58 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+....+...+|++..+...+...+.+...++.+++|+++|| +|||++++++.++
T Consensus 187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil 241 (742)
T TIGR01299 187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSV 241 (742)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 344445566799999999999999999999999999999999 5999999988754
No 59
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.25 E-value=5.4e-06 Score=65.44 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=60.8
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
|.++.+++ +.++......++....++.+..|+|.|+++.+|++..++........+...++.+++|+++|| +++|
T Consensus 253 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~ 327 (465)
T TIGR00894 253 PIKAIPKS--LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSS 327 (465)
T ss_pred CHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 44444433 345666667778888888889999999999999999999988888889999999999999999 4654
No 60
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.25 E-value=4.8e-06 Score=62.91 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+......++....++....++|.|+++.+|+++.++........+...++.+++|+++|| +|||+.+..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~ 299 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFL 299 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHH
Confidence 333334444455667788899999999999999999988888888899999999999999 599887765543
No 61
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.25 E-value=9.8e-06 Score=63.02 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
.++......++....+++...++|.|+++ +|++..++........+...++.++.|+++|| +|||+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~ 291 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVR 291 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHH
Confidence 34555555667778888999999999864 89999998888888889999999999999999 59888764
No 62
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.23 E-value=8.9e-06 Score=65.25 Aligned_cols=74 Identities=14% Similarity=-0.050 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.......++....+++...++|.|++...|+++.++........+...++.+++|++.|| +|+|+.+..+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~ 334 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMAL 334 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence 3444455555566677778899999999999999999999999999999999999999999 5999998877654
No 63
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.21 E-value=2.2e-06 Score=67.48 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=44.8
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+...++++ .|+++.+.......+.+...++.+++|+++|| +|||+++..+.++
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~ 100 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLIL 100 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHH
Confidence 33445555 59999999999999999999999999999999 5999998877654
No 64
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.20 E-value=8.2e-06 Score=60.28 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 42 IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.....+......+......|.|.+ +.|.+..+.........+...++.++.|+++|| +|||+.+..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~ 74 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHH
Confidence 334456667777777788888876 479999999999999999999999999999999 59999998887653
No 65
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.19 E-value=4.6e-06 Score=67.84 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=72.2
Q ss_pred CCCccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc
Q 048637 24 RGRPVHRANS--GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL 101 (116)
Q Consensus 24 ~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i 101 (116)
++.+++++++ ++++++..++.+.+++....--...++.+.+....|++..++..++.....+..+..+++.++-|| +
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~ 332 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-L 332 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 4556777775 446777777777777776544445556666666799999999999999999999999999999999 5
Q ss_pred chHHHHHHHHHHH
Q 048637 102 GRYQTIFLLLLFM 114 (116)
Q Consensus 102 GRr~~i~~~~il~ 114 (116)
|||+.++.+..++
T Consensus 333 gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 333 GRRPLLLISLSLM 345 (485)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999988754
No 66
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.18 E-value=7.8e-06 Score=61.06 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+............+|.|..+ .+.+..+...+.....+...++.++.|+++|| +||||++..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~ 73 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLI 73 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHH
Confidence 34444444555667777764 79999999999999999999999999999999 5999999887654
No 67
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.17 E-value=2.3e-05 Score=61.61 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CChHHHH---HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLG---QSTATAA---QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg---~~~~~a~---~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.+.+..-... ..+...++.++++ .+..+.. .+.....+...++.+++|+++|| +||||++..+.++.
T Consensus 31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~ 103 (432)
T PRK10406 31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMM 103 (432)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 3444444433 4455556666663 4444322 23334444455888999999999 59999998887654
No 68
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.17 E-value=1.9e-05 Score=61.26 Aligned_cols=60 Identities=23% Similarity=0.155 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..+.+..++|.|++. .|+++.+.........++..++.+++|+++|| +|||+++..+.++
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~ 305 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLM 305 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 444567789999876 59999888888888888899999999999999 5999998877643
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.14 E-value=2.2e-05 Score=61.83 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+++......+.....+......+|.+ ++++|++..++..+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~ 78 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence 34444444454455544444556555 67899999999999999999999999999999999 59999999888654
No 70
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.14 E-value=2.7e-05 Score=58.91 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
......++|.|+++++|.++.++........+...++.+++|+++|| +|||+++..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~ 273 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAAL 273 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHH
Confidence 34455678999988899999988877777777777788999999999 599998877654
No 71
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.14 E-value=2.3e-05 Score=61.78 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch-HHHHHHHHH
Q 048637 42 IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR-YQTIFLLLL 112 (116)
Q Consensus 42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR-r~~i~~~~i 112 (116)
..+..+.....+-....+++.|+++++|++..+...+.....+...++.+++|+++|| +|| |+++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~ 77 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHF 77 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHH
Confidence 3444455566666777899999999999999999999999999999999999999999 576 666665544
No 72
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.13 E-value=1.6e-05 Score=64.58 Aligned_cols=73 Identities=21% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQTIFLLLL 112 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~i~~~~i 112 (116)
.++....+.+.-.+.+-....+++.|+ +.+|.++..+..+..+..+...+..|+.|++|| | +||||.++.+..
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr-~GRRrp~il~g~ 81 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSR-FGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCC-CCChHHHHHHHH
Confidence 345555555555666666666777776 469999999999999999999999999999999 6 599999987643
No 73
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.13 E-value=1.7e-05 Score=59.32 Aligned_cols=65 Identities=14% Similarity=-0.039 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
++..........+.+.|.+ ++|.+..+.........+...++.+++|+++|| +|||+.+.++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~ 279 (377)
T TIGR00890 215 FLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGI 279 (377)
T ss_pred HHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHH
Confidence 3334444445556666754 588998888888888899999999999999999 5999998776653
No 74
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.12 E-value=2.3e-05 Score=61.42 Aligned_cols=68 Identities=9% Similarity=-0.111 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
.++......++....++.+..|+|.|+++ ..|++..++........+...++.+++|+++|| +|||+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~ 311 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKH 311 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHH
Confidence 34555566677778888999999999987 357888888888888889999999999999999 597774
No 75
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.12 E-value=4.4e-06 Score=66.96 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHH------------HHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQ------------NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~------------~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..++....+|+...++|++++ .+|++..++.. ...+..+...++.+++|+++|| +|||++++++.+
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHH
Confidence 334556688888889999996 57886543211 1223334455577889999999 599999887765
Q ss_pred H
Q 048637 113 F 113 (116)
Q Consensus 113 l 113 (116)
+
T Consensus 374 ~ 374 (502)
T TIGR00887 374 I 374 (502)
T ss_pred H
Confidence 4
No 76
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.11 E-value=2.2e-05 Score=62.05 Aligned_cols=67 Identities=13% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc--chHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL--GRYQ 105 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i--GRr~ 105 (116)
.++...+...+.....|+...|+|.|++++.|++..++........+...++.+++|+++|| + |||+
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~ 322 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRG 322 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcc
Confidence 34555555556666778888999999999899999888888888888888899999999999 6 4443
No 77
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.11 E-value=2.1e-05 Score=62.27 Aligned_cols=57 Identities=28% Similarity=0.225 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
....++|.|++..+|++..++........+...++.+++|+++|| +|||+++..+.+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~ 349 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLL 349 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence 356789999988899999999999999999999999999999999 599999887654
No 78
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.11 E-value=1.2e-05 Score=62.49 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=75.6
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 26 RPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 26 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
.|-.+-++.+.-++|....+..+..+..+.+.+.-|.|+++..|+++..+..+.....+.+.+..|+.|.++||+ |++-
T Consensus 253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~ 331 (459)
T KOG4686|consen 253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL 331 (459)
T ss_pred CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence 455555677777889999898888888888888899999999999999999999999999999999999999996 9988
Q ss_pred HHHHHHHH
Q 048637 106 TIFLLLLF 113 (116)
Q Consensus 106 ~i~~~~il 113 (116)
..+.++.+
T Consensus 332 ~wv~~a~~ 339 (459)
T KOG4686|consen 332 WWVASACI 339 (459)
T ss_pred hhHHHHHH
Confidence 77766544
No 79
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.10 E-value=1.7e-05 Score=61.75 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=43.5
Q ss_pred ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 65 TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 65 ~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
..++|.+..+...+...+.+...++.|++|+++|| +||||++.++.++.
T Consensus 30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~ 78 (393)
T PRK11195 30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIK 78 (393)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHH
Confidence 46789999999999999999999999999999999 59999999887643
No 80
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.10 E-value=2.3e-05 Score=61.71 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 50 RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 50 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
....+....++|.+.+ ++|++..+...+...+.+...++.+++|+++|| +|||+++.++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~ 98 (434)
T PRK11663 36 YFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIAT 98 (434)
T ss_pred HHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHH
Confidence 3333455566776665 599999999999999999999999999999999 59999998877653
No 81
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.10 E-value=2.7e-05 Score=59.92 Aligned_cols=69 Identities=12% Similarity=-0.034 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 43 IGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 43 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+...+....++......+|.+.. ++|.++.+.......+.+...++.++.|+++|| +|||+++..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~ 77 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAA-DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAAL 77 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHH
Confidence 34445555555555566776654 589999999999999999999999999999999 5999999988754
No 82
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.09 E-value=3.5e-05 Score=59.94 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.......+....+++...++|.|+.+ .|++..++........+...++.++.|+++|| +|||+.++.+.++
T Consensus 208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l 279 (393)
T PRK09705 208 WTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVL 279 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHH
Confidence 333334445567788888999999986 79999999999999999999999999999999 5999988776543
No 83
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.09 E-value=2.6e-05 Score=60.18 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++......++.....+.....+|.+. +++|.+..+.........+...++.+++|+++|| +|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 78 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALC 78 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHH
Confidence 444445555555666666666777654 5799999999999999999999999999999999 59999999887653
No 84
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.09 E-value=3.3e-05 Score=58.54 Aligned_cols=66 Identities=12% Similarity=-0.145 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.......++....+.|.|++++.|.++.++........+...++.+++|+++|| +|||+.+..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~ 280 (385)
T TIGR00710 215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLI 280 (385)
T ss_pred HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 334455666777788999988899999999988888888999999999999999 599998876654
No 85
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.08 E-value=4.9e-05 Score=58.72 Aligned_cols=74 Identities=7% Similarity=-0.088 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
++......++....++...++.|.|+++ .|.++.+.........+...+..+++|++.|| +|.|+++.++.+..
T Consensus 207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 207 NLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIAC 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHH
Confidence 4444444455566677788899999975 89999999988888888888899999999999 59999999887754
No 86
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.08 E-value=3.5e-05 Score=59.41 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.++....++....++|.|++. .|++..++........+...++.++.|+++|| +|||+.+..+.+
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~ 293 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYA 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 344455667777889999976 79999999999989999999999999999999 599999876543
No 87
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.08 E-value=2.9e-05 Score=60.97 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 64 LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 64 l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.+.+|.+..++.....++.+...++.+++|+++|| +|||+++..+.++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~ 90 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALI 90 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHH
Confidence 345689999999999999999999999999999999 5999999888654
No 88
>PRK10133 L-fucose transporter; Provisional
Probab=98.08 E-value=4.5e-05 Score=60.59 Aligned_cols=67 Identities=15% Similarity=0.019 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYL-TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl-~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.++.....+....|++.|+ ++..|+++.++......+.+...++.+++|+++|| +|||+++..+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~ 334 (438)
T PRK10133 267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALI 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 3444556666677889896 56789999999999999999999999999999999 5999998877644
No 89
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.07 E-value=2.5e-05 Score=62.90 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHH-HHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNA-NKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.+.....+....+.+.|+.++.|++..+..... ....+...++.+++|+++|| +||||.+.++.+
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~ 297 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGI 297 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 344455555667788898878999999999887 45667888999999999999 599988776554
No 90
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.07 E-value=3.6e-05 Score=60.47 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+............+|.+. +.+|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++.
T Consensus 12 ~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 77 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAF 77 (485)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHH
Confidence 333444444545566554 5699999999999999999999999999999999 59999999887653
No 91
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.06 E-value=8.5e-06 Score=62.68 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 70 QSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~ 110 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALL 110 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHH
Confidence 448999999999999999999999999999 5999999887754
No 92
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.05 E-value=4.9e-05 Score=56.13 Aligned_cols=75 Identities=28% Similarity=0.330 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH-HHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ-TIFLLLLF 113 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~-~i~~~~il 113 (116)
.++......++..........+.|.|..+..|.+..+.........+...++.++.|+++|| +|||+ .+..+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLL 251 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH
Confidence 34444455566667777788889999988889999999999999999999999999999999 59999 77766654
No 93
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.05 E-value=7.4e-05 Score=56.93 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTG--PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~--~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+++....++....--+...|+++|+.+ .+|+++.++......+.+...++-+++++++|| +|++|++.++.++
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l 217 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFL 217 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence 4444444444444455677899999974 479999999999999999999999999999999 5999998877653
No 94
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.05 E-value=2.8e-05 Score=62.10 Aligned_cols=74 Identities=15% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
|++...++..++.....+....+.+.|.+..++ ++........+..+...++.++.++++|| +|+|++++++.+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~ 304 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASI 304 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence 666666677777777888777777766666555 44445555556667778888999999999 599999876654
No 95
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.04 E-value=4.5e-05 Score=58.04 Aligned_cols=66 Identities=6% Similarity=-0.178 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
........+....+.|.++.++.|+++.+.........++..++.+++|+++|| +|||+++..+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~ 268 (377)
T PRK11102 203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLW 268 (377)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence 334444455566677788888899999999999999999999999999999999 599998887664
No 96
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.04 E-value=3.7e-05 Score=61.14 Aligned_cols=56 Identities=5% Similarity=-0.091 Sum_probs=46.3
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+..+++.+ ...+|.+..+.....+.+.....++.+++|+++|| +|||++++.+.++
T Consensus 38 ~~~~~~~i-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~ 93 (455)
T TIGR00892 38 VTVFFKEL-QQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLL 93 (455)
T ss_pred hhhhHHHH-HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHH
Confidence 44445544 45799999999999999988889999999999999 5999999987754
No 97
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.02 E-value=2.8e-05 Score=61.84 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..++....+.++...+.|..++|+--|+++..|++......+...+.+...++.+++|+++|| +.++++....++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l 285 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLL 285 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHH
Confidence 346777777888888999999999999999999999999999999999999999999999999 777777666443
No 98
>PRK10504 putative transporter; Provisional
Probab=98.01 E-value=5.6e-05 Score=59.63 Aligned_cols=74 Identities=15% Similarity=-0.082 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+...+...++....+.....+.|.|++...|.++.++........+...++.++.|+++|| +|||+++..+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~ 336 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLG 336 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence 3444444455555666666778889888899999999888877777777788999999999 5999999877653
No 99
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.00 E-value=3.1e-05 Score=60.91 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
++.......+.....|++..++|.|+++..|++..++........+...++.+++|+++|| +|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~ 318 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGN 318 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence 3444444455566678888999999999899999999988888888899999999999999 56543
No 100
>PRK09952 shikimate transporter; Provisional
Probab=97.99 E-value=6.3e-05 Score=59.40 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChHHHHHHH----HHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPL--GQSTATAAQNA----NKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~~~~~a~~~~----~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~ 109 (116)
+|.++...+....+..-........|.+..+++ +.++.+..... ....+...++.+++|+++|| +|||+++..
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHH
Confidence 444444444445554444444334444555443 56665433221 12334455677889999999 599999998
Q ss_pred HHHHH
Q 048637 110 LLLFM 114 (116)
Q Consensus 110 ~~il~ 114 (116)
+.++.
T Consensus 100 ~~~~~ 104 (438)
T PRK09952 100 TVWMM 104 (438)
T ss_pred HHHHH
Confidence 77653
No 101
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.99 E-value=1.9e-05 Score=58.86 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCC-hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 42 IIGVEMAERFAFCGTGSNLITYLTGPLGQS-TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~-~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.+....+....++....++|.|+.+.+|++ ..+......+..+...++.++.|+++|| +|+++.+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 281 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAIL 281 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence 333444445566778889999999999999 7888888889999999999999999999 598776665554
No 102
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.99 E-value=5.6e-05 Score=60.53 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 48 AERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 48 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
......+....++|.|+.++.|++..++.....+..++..++.+++|+++|| +|||
T Consensus 263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r 318 (476)
T PLN00028 263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARR 318 (476)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHh
Confidence 3344445667789999988899999999999999999999999999999999 5976
No 103
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.98 E-value=5.4e-05 Score=58.39 Aligned_cols=66 Identities=12% Similarity=-0.084 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.....+....+++.|+.+..|+++.++........+...++.++.|+++|| +|+|+.+..+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~ 274 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFI 274 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHH
Confidence 33444555556778888888899999999999999999999999999999999 5999988776543
No 104
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.98 E-value=1.5e-05 Score=61.94 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHH-HHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQ-TIFLLL 111 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~-~i~~~~ 111 (116)
+..+.....+..|++.|+++++|+++.++..+..+..+...+..|+.|+++||. +|||| .++.+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~ 77 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGA 77 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhH
Confidence 344556667778999999999999999999999999999999999999999972 48755 454444
No 105
>TIGR00895 2A0115 benzoate transport.
Probab=97.98 E-value=9.1e-05 Score=55.93 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
+..+.......+....++....++| ++....|++..++........+...++.+++|+++|| +|||+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~ 321 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLL 321 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHH
Confidence 3344444455566677777888888 5556789999999999999999999999999999999 5998655443
No 106
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.97 E-value=6.7e-05 Score=60.21 Aligned_cols=74 Identities=16% Similarity=0.020 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+.......+....-.-++.+-+|... .++|.+..+..++.+.+.+....+.+++|+++|| +|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 33333444444444445555677775 4699999999999999999999999999999999 59999999887653
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.97 E-value=3e-05 Score=60.84 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
|+....++..++..........+.+.|.+..+|.+. ..........+...++.++.++++|| +|+|+++..+.++.
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLA 300 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHH
Confidence 455666666677777777777888888888888884 45556667888888899999999999 59999999888654
No 108
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.96 E-value=2.4e-05 Score=61.57 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=41.7
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+|.++.+...+.+.+.+...++.+++|+++|| +||||++..+.++.
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~ 95 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLF 95 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 48899999999999999999999999999999 59999999887654
No 109
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.93 E-value=4.3e-05 Score=57.24 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
++.............+....++|.|+++..|+++.++........+...++.+++|+++||..+||+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 284 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR 284 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence 4444444455566667788899999999999999999999999999999999999999998423333
No 110
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.91 E-value=0.00013 Score=56.16 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
....+.|.|+..++|+++.+.........+...++.++.|+++|| +|||++++.+.++
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~ 278 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVL 278 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 344567788888899999988888888888889999999999999 5999999877653
No 111
>PRK03545 putative arabinose transporter; Provisional
Probab=97.90 E-value=0.00013 Score=56.36 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
.++....++....+++.|++++.|++..++........+...++.+++|+++|| +|||+.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~ 277 (390)
T PRK03545 214 TVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLIAI 277 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHH
Confidence 334444556666788889888899999999988888888999999999999999 5988765443
No 112
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.90 E-value=6.6e-05 Score=60.07 Aligned_cols=70 Identities=16% Similarity=0.029 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
+.+..-...+.....+-....|++.|++++.|++.++...+..+..+...+..|+.|.++|| +|.||.++
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll 77 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLL 77 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHH
Confidence 44444444444455556677889999999999999999999999999999999999999999 59666544
No 113
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.89 E-value=5.4e-05 Score=58.86 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++.....+|... +++|.+..+.....+.+.+...++.+++|+++|| +|||+++..+.++.
T Consensus 24 ~~~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~ 84 (393)
T PRK09705 24 LLTSVGPLLPQLR-QASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLI 84 (393)
T ss_pred hhhccchhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHH
Confidence 3355555666544 5799999999999999999999999999999999 59999999988764
No 114
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.89 E-value=3e-05 Score=61.92 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHH-HHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQT-IFLLLL 112 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~-i~~~~i 112 (116)
.+.++++- +..+..+..+..|++.|+++.+|+++..+..+..+..+.-.+..|+.|+++| | +||||. +.++.+
T Consensus 8 ~~~yg~g~-~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i 85 (473)
T PRK10429 8 KLSYGFGA-FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTL 85 (473)
T ss_pred HHhhccch-hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhH
Confidence 34444433 3446667778889999999999999999999999999999999999999999 6 499554 444443
No 115
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.89 E-value=2.7e-05 Score=58.32 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 62 TYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 62 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++.+++|++..+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 70 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILC 70 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHH
Confidence 35667899999999999999999999999999999999 59999999887653
No 116
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.87 E-value=0.00016 Score=55.90 Aligned_cols=65 Identities=11% Similarity=-0.235 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
......++....+.|.|+.+.+|+++.+.........+...++.++.|+++|| +|+|+.+.++.+
T Consensus 225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~ 289 (406)
T PRK15402 225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLW 289 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 33344455566678999888899999888777666667778889999999999 599998887654
No 117
>PRK09848 glucuronide transporter; Provisional
Probab=97.87 E-value=3.8e-05 Score=60.52 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQTI 107 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~i 107 (116)
...+..+.....|++.|+++.+|++..++..+.....+...+..|+.|+++||. +||||..
T Consensus 18 ~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 18 VANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 345666666778888999999999999999999999999999999999999992 2777755
No 118
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.86 E-value=0.00013 Score=57.34 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~ 100 (116)
++............++.+..++|.|+++..|++..++........+...++.+++|+++||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 44444444555556667788999999888999999999999999999999999999999994
No 119
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.85 E-value=3.5e-05 Score=62.86 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred cCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 23 YRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 23 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
++...+.+.++. |+ ++...+..++.....|++..|+|.|+++..|++..++....+...+...++.+++|+++||
T Consensus 261 ~~~~~~~~a~~d-p~-vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 261 FKWKGFKEALKD-PG-VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred cCHHHHHHHHhc-hh-HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 666667777664 34 3444455566777888899999999999788999999999999999999999999999999
No 120
>PTZ00207 hypothetical protein; Provisional
Probab=97.85 E-value=0.00022 Score=59.38 Aligned_cols=75 Identities=8% Similarity=-0.041 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
|..+..++.+..+. ...|++..+.+ .+++++|++..+...+..+.... ..+.+++|+++|| +|+|+++.++.++.
T Consensus 27 w~~lva~~~~~~~~-g~~y~fsv~s~-~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr-~G~R~vllig~ll~ 101 (591)
T PTZ00207 27 FALLVLGAFCSICT-SFMYAFNLISG-AMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDY-LGPRPIFVLSMTVF 101 (591)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence 34444444444443 34456665555 46778999999988887664444 3466678999999 59999999988754
No 121
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.84 E-value=6.7e-05 Score=58.42 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=43.7
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
....+|. +.+++|+++.+...+...+.+...++.+++|+++|| +|||+++....
T Consensus 10 ~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~ 63 (368)
T TIGR00903 10 FSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSL 63 (368)
T ss_pred HHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHH
Confidence 3333444 455799999999999999999999999999999999 59999876544
No 122
>PRK09669 putative symporter YagG; Provisional
Probab=97.84 E-value=3.5e-05 Score=60.77 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHH-HHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQT-IFLL 110 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~-i~~~ 110 (116)
.+.++++- ...+..+..+..|++.|+++.+|+++..+..+..+..+...+.-|+.|+++||. +||||. ++++
T Consensus 11 ~~~yg~g~-~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~ 86 (444)
T PRK09669 11 KIGYGLGD-TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF 86 (444)
T ss_pred HHhhcchh-hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH
Confidence 44555544 444555667788999999999999999999999999999999999999999992 277554 4444
No 123
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.84 E-value=0.0001 Score=57.02 Aligned_cols=84 Identities=6% Similarity=-0.017 Sum_probs=53.6
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637 27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPL---GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR 103 (116)
Q Consensus 27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR 103 (116)
+.++.+|+.. ++.......+....+.....+++.|++..+ +.+............+...++.++.|++.|| +||
T Consensus 207 ~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~ 283 (396)
T TIGR00882 207 LALELFRQRK--FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGA 283 (396)
T ss_pred HHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 3445555432 222222333333444445556778877654 5555566666677777788888999999999 599
Q ss_pred HHHHHHHHHH
Q 048637 104 YQTIFLLLLF 113 (116)
Q Consensus 104 r~~i~~~~il 113 (116)
|+.+.++.++
T Consensus 284 ~~~l~~~~~l 293 (396)
T TIGR00882 284 KNALLIAGTI 293 (396)
T ss_pred chhHHHHHHH
Confidence 9998887754
No 124
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.84 E-value=0.00017 Score=55.59 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 51 FAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 51 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..+.....++|.|+++ .|.+..++........+...++.++.|+++|| +|+|+++..+.+
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~ 273 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVF 273 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHH
Confidence 3444556788999975 69999888888888888889999999999999 599998876544
No 125
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.84 E-value=0.0002 Score=53.46 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~-~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
++............++... .+.|.|.++.+|.+..+.........+...++.++.|+++|| +||++.+..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 285 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIF 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 3333444444455555555 678888887899999999999989999999999999999999 599998887644
No 126
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.83 E-value=0.00013 Score=62.12 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 78 NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 78 ~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
...+..++..++.+++|+++|| +|||+++.++.++
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~l 634 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVL 634 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 3456667788899999999999 5999999877654
No 127
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.79 E-value=0.00013 Score=60.87 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcccc--hHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSFLG--RYQTIFLLLL 112 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~iG--Rr~~i~~~~i 112 (116)
.++...+..++....++++..|+|.|++.++|+++.++..+.....+ ...++.+++|+++|| ++ .|+.+.++.+
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~ 407 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAIC 407 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHH
Confidence 45666677778888999999999999999999999999988876665 567899999999999 58 4555555443
No 128
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.78 E-value=0.00011 Score=56.40 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+....+.|.++. +.|++..++........++..++.+++|+++|| +|||+.+.++.++
T Consensus 300 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~ 358 (481)
T TIGR00879 300 INAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAG 358 (481)
T ss_pred CeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHH
Confidence 3344445555554 579999888888888888899999999999999 5999998877553
No 129
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.78 E-value=6.5e-05 Score=57.16 Aligned_cols=59 Identities=17% Similarity=0.055 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 54 CGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 54 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
......+|.+.+ ++|++..+......++.+...++.+++|+++|| +|||+++..+.++.
T Consensus 8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~ 66 (377)
T PRK11102 8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVF 66 (377)
T ss_pred HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHH
Confidence 344566777775 589999999999999999999999999999999 59999999887643
No 130
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.77 E-value=6.1e-05 Score=56.31 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=46.2
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
...++.+++|++..+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus 16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~ 68 (399)
T TIGR00893 16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVI 68 (399)
T ss_pred hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHH
Confidence 3344667899999999999999999999999999999999 5999999887654
No 131
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.74 E-value=0.0002 Score=55.64 Aligned_cols=75 Identities=16% Similarity=0.022 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
|+++..+...++....++....+.+.|.+..+| +............+...++.++.|+++|| +|||+++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~ 296 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILL 296 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 344445555555566666665566667766666 44555556667778888899999999999 5999999887654
No 132
>PRK15075 citrate-proton symporter; Provisional
Probab=97.74 E-value=0.00028 Score=55.49 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=35.2
Q ss_pred HHHHHhccccCCChHHHH-HHHHHHH-----HHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 59 NLITYLTGPLGQSTATAA-QNANKWS-----GTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 59 ~l~~yl~~~lg~~~~~a~-~~~~~~~-----~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
++...+.++++.++.+.. ...+... +...++.++.|+++|| +||||+++.+.++.
T Consensus 36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~ 96 (434)
T PRK15075 36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHH
Confidence 333455667888766533 2222221 1223567899999999 59999999888654
No 133
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.73 E-value=0.00028 Score=56.52 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHH-HH-----HHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATA-AQ-----NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a-~~-----~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~ 109 (116)
++.++...+..+.+..-+. +..+...++.+.++.+.... .. +.....+...++.+++|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 3444444444445444333 44455556666664333211 11 1244556677899999999999 599999999
Q ss_pred HHHHH
Q 048637 110 LLLFM 114 (116)
Q Consensus 110 ~~il~ 114 (116)
+.++.
T Consensus 93 ~~~l~ 97 (490)
T PRK10642 93 TIVIM 97 (490)
T ss_pred HHHHH
Confidence 88654
No 134
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.71 E-value=0.00032 Score=54.12 Aligned_cols=67 Identities=15% Similarity=0.015 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..++..........+.+.|+.+ .|+++.+.......... ...++.+++|+++|| +|+|+++..+.++
T Consensus 216 ~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~ 283 (390)
T TIGR02718 216 LALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGL 283 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 3344445555666788888876 79999998887776654 555678899999999 5999999876643
No 135
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.71 E-value=2.9e-05 Score=59.02 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 57 GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 57 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
...+|. +.+++|++.++.........+...++.++.|+++|| +||||++..+.++
T Consensus 20 ~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 74 (355)
T TIGR00896 20 GPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLL 74 (355)
T ss_pred cccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHH
Confidence 334554 455799999999999999999999999999999999 5999999988754
No 136
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.69 E-value=0.00036 Score=56.67 Aligned_cols=80 Identities=16% Similarity=0.034 Sum_probs=65.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH--HHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY--QTIFLL 110 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr--~~i~~~ 110 (116)
|+++ .+..-+...+..+-+...+..+...|.++++|++..+...+..+..+++.++.+++|++.|| +|-| +++..+
T Consensus 278 ~~~~-~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~ 355 (477)
T PF11700_consen 278 RKLR-QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLIS 355 (477)
T ss_pred HhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence 4444 44444455566677778888999999999999999999999999999999999999999999 6999 888777
Q ss_pred HHHH
Q 048637 111 LLFM 114 (116)
Q Consensus 111 ~il~ 114 (116)
.++.
T Consensus 356 l~~~ 359 (477)
T PF11700_consen 356 LILW 359 (477)
T ss_pred HHHH
Confidence 6543
No 137
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.68 E-value=9.9e-05 Score=57.55 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 51 FAFCGTGSNLITYLTGPL---GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 51 ~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..+......+|.|+.+.. +.+..+...+..+..+...++.+++|+++|| +|||+.+..+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l 301 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTI 301 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHH
Confidence 333444456777776443 5666666777777778888999999999999 5999998776653
No 138
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.68 E-value=0.00029 Score=61.16 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHH--HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 44 GVEMAERFAFCGTGSNLITYLTGPLGQSTAT--AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 44 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~--a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
...++.+....+....+..++...++.+... ...+..++.+...++.+++|+++|| +|||++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~ 85 (1146)
T PRK08633 16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKL 85 (1146)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHH
Confidence 3333334333333344444554444554333 4566677777888899999999999 599999987653
No 139
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.68 E-value=0.00081 Score=54.56 Aligned_cols=77 Identities=8% Similarity=-0.048 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
|+++.........-..-+......+..-...+|+++++......+..+...++.++.|++.|| +|.|+++.++.++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~ 110 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence 555555544333333333333333333344799999999999999999999998888999999 49999998887653
No 140
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.67 E-value=0.00033 Score=56.16 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 69 GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 69 g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.+..+...+.....+...++.+++|+++|| +|||+++.++.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~ 95 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELII 95 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence 4556666778888888999999999999999 5999999877654
No 141
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.62 E-value=8.5e-05 Score=57.79 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
+............+|.+.+ +++.++.+...+.....+...++.+++|+++|| +|||+++..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~ 89 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLAR 89 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehH
Confidence 3444455555666777765 467799999999999999999999999999999 59999887654
No 142
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.61 E-value=0.00019 Score=56.41 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=44.2
Q ss_pred cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHHh
Q 048637 66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMS 115 (116)
Q Consensus 66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~~ 115 (116)
++.|+++.+.......+.+.+.++.++.|.++||+ |||+..+..+++.+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~ 110 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYS 110 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHH
Confidence 46899999999999999999999999999999995 99999999888653
No 143
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.59 E-value=0.00087 Score=51.68 Aligned_cols=73 Identities=8% Similarity=-0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
++......++....+.....++|.|+. +.|++..+......+..+...+..++.|++.|| +|+|+.+..+.+.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~ 279 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAIC 279 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHH
Confidence 333333334444555566778888986 489999888888888888888888999999999 5999998877754
No 144
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.57 E-value=0.0005 Score=54.10 Aligned_cols=59 Identities=19% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 54 CGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 54 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+....+.|.+.. ..|++...+........+...++.+++|+++|| +|||++++.+.++.
T Consensus 288 ~~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~ 346 (479)
T PRK10077 288 NVVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGM 346 (479)
T ss_pred hHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHH
Confidence 334445566554 588888777777777778888899999999999 59999998877643
No 145
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.57 E-value=0.00068 Score=52.63 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHhccccCCChHHHHHHHHHH-HHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 58 SNLITYLTGPLGQSTATAAQNANKW-SGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 58 ~~l~~yl~~~lg~~~~~a~~~~~~~-~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.+.+.|+.+..|+++.+...+.... .+...++.+++|+++|| +|||+.+..+.+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~ 284 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGV 284 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 3445566677899998888776544 44578889999999999 599998876554
No 146
>PRK09848 glucuronide transporter; Provisional
Probab=97.57 E-value=0.00042 Score=54.59 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.......++....++......|.|++..+|.++..+........+...++.++.++++|| +|+|+++.++.++
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~ 303 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALL 303 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 4444444555566666666678888888899887666554444455677788999999999 5999999887754
No 147
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.54 E-value=5.9e-05 Score=62.96 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
...+|-+++.+.+.......+.+......+-+.+.++++..+...+...+.+...++.++.|+++|| +||+|.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHH
Confidence 3445655455554444444444444445555667899999999999999999999999999999999 599999888876
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
++
T Consensus 107 l~ 108 (633)
T TIGR00805 107 IM 108 (633)
T ss_pred HH
Confidence 54
No 148
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.54 E-value=0.0007 Score=55.50 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=48.8
Q ss_pred HHHHHHhccccCCChHH-HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 58 SNLITYLTGPLGQSTAT-AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 58 ~~l~~yl~~~lg~~~~~-a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+...|+.+++|+++.+ ...+...+.....++.+++|+++|| +|-|+++..+.+.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~ 101 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALS 101 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence 45566888899999999 8899999999999999999999999 5999999988764
No 149
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.53 E-value=0.0011 Score=51.13 Aligned_cols=56 Identities=9% Similarity=-0.159 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
+....++.....++|.|++ ++|.+..+...+...+.+...++.++.|.++|| +||+
T Consensus 14 ~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~ 69 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHI 69 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcH
Confidence 3334444556678889996 589999999999999999999999999999999 5974
No 150
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.52 E-value=0.0008 Score=51.90 Aligned_cols=55 Identities=18% Similarity=-0.025 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR 103 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR 103 (116)
++...++.....++|.|+++ +|.+..+......++.+...++.+++|.++|| +||
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~ 68 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQ 68 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcc
Confidence 34445566777789999965 79999999999999999999999999999999 598
No 151
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.46 E-value=0.0015 Score=51.82 Aligned_cols=67 Identities=19% Similarity=0.089 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..+.+-..+-....|++.|+++ .|++..+...+.....++..+.+++.|+++||+..+||.+.+..+
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l 76 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSL 76 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence 3344445555666789999986 679999999999999999999999999999996446777655443
No 152
>TIGR00898 2A0119 cation transport protein.
Probab=97.44 E-value=0.00023 Score=56.65 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.0
Q ss_pred hccccCCC---hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 64 LTGPLGQS---TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 64 l~~~lg~~---~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+.+++|++ ..+......++.+...++.+++|+++|| +|||+++.++.++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~ 167 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVT 167 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHH
Confidence 45678998 8889999999999999999999999999 59999999887643
No 153
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.43 E-value=7e-05 Score=58.78 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQTIFLLL 111 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~i~~~~ 111 (116)
......+.....|++.|+++.+|+++.....+..+..+...+.-|+.|+++| | +||||..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g 78 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIG 78 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehh
Confidence 4555566667789999999999999999999999999999999999999999 8 59887766433
No 154
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0011 Score=53.84 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+....++...+....+....+.++.|.+..+|.++..+.............+.++.-.+++| +|+|+++.++.++.
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~ 312 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLL 312 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHH
Confidence 34444445666677777778888999999999999999888888888888889999999999 69999999997654
No 155
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.37 E-value=0.00083 Score=58.34 Aligned_cols=66 Identities=14% Similarity=-0.077 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChH-HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTA-TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~-~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.....+....++|.|+...+|++.. .+..+.....+...++.+++|+++|| +++++++.++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~ 308 (1146)
T PRK08633 242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALG 308 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHH
Confidence 334445556677899999999999998 88888888888888999999999999 5998888766543
No 156
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00034 Score=57.10 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=40.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
-|++......+...+.+...++++++||++|| +|||+++....+++
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liIm 124 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIM 124 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHH
Confidence 35888999999999999999999999999999 59999987776654
No 157
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.36 E-value=0.00068 Score=54.53 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHHh
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMS 115 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~~ 115 (116)
++.+-....+..+=+.-.+..+...|....+|++..+...+....++++.++++++|+|.|| +|-|+++..+.++++
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~ 329 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILS 329 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHH
Confidence 44444444444444555677888999999999999999999999999999999999999999 699999998887653
No 158
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.00035 Score=56.81 Aligned_cols=79 Identities=8% Similarity=0.040 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+...+.+...+++...+.+--|.+-. ...=.++.+|.+......+...+.+...++.|++|+++||| .|++++.+|..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 33445667777777777777775544 22224456899999999999999999999999999999996 99999988875
Q ss_pred H
Q 048637 113 F 113 (116)
Q Consensus 113 l 113 (116)
+
T Consensus 107 i 107 (493)
T KOG1330|consen 107 I 107 (493)
T ss_pred H
Confidence 4
No 159
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.34 E-value=0.00077 Score=53.13 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhccccCCC--------hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQS--------TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~--------~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.......+.+.|+++ .|.+ .........+..+...++.++.|+++|| +|||+++..+.++.
T Consensus 223 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~ 291 (418)
T TIGR00889 223 PLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAW 291 (418)
T ss_pred HHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence 334455777888864 4433 3556777778888888899999999999 59999998887653
No 160
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.30 E-value=0.0012 Score=52.18 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=41.6
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
++|++..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~ 115 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFL 115 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHH
Confidence 578999999999999999999999999999999 5999999887754
No 161
>PRK11043 putative transporter; Provisional
Probab=97.28 E-value=0.004 Score=48.02 Aligned_cols=60 Identities=15% Similarity=-0.114 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
....++....+.|.|+++ .|++..+.........+...++.++++++.|| +|+|+.+..+
T Consensus 215 ~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~ 274 (401)
T PRK11043 215 CSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWL 274 (401)
T ss_pred HHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHH
Confidence 344556666778888864 79999888877767777788888999999999 5999876443
No 162
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.27 E-value=0.0023 Score=49.74 Aligned_cols=59 Identities=10% Similarity=-0.084 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.+....++|.|+++.+|++..+...+.....+...++.++.|+++|| .++++.+..+.+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~ 297 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTL 297 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHH
Confidence 34566789999998899999998888888888899999999999999 487777766554
No 163
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.27 E-value=0.004 Score=49.05 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTGP-LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..++......+..+|++.|+.+. .+.+...+......+.....++-+++|+++|| +++||++.+.++.
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~ 308 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAII 308 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 33444444456678899998653 35555555656666777888999999999999 5999988766654
No 164
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.21 E-value=0.0033 Score=48.19 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhccccCCChHH---HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 50 RFAFCGTGSNLITYLTGPLGQSTAT---AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 50 ~~~~y~~~~~l~~yl~~~lg~~~~~---a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.........+++.|..+..+..... ...+..+..+...++.++.|+++|| +|||+++..+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~ 297 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHH
Confidence 3344455667888887654433222 2223334455666778889999999 5999998877654
No 165
>PRK11462 putative transporter; Provisional
Probab=97.21 E-value=0.001 Score=53.19 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc---ccchHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS---FLGRYQTIFLLL 111 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr---~iGRr~~i~~~~ 111 (116)
+.+.++++- +..+..+..+..|++.|++..+|+++..+..+..+.-+.-.+.-|+.|+++|| .+||||..+...
T Consensus 10 ~k~~Yg~g~-~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g 86 (460)
T PRK11462 10 EKIGYGMGD-AASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFG 86 (460)
T ss_pred HHHhhccch-hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHH
Confidence 345555443 34466667778899999999999999999999999999999999999999996 259887666443
No 166
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.21 E-value=0.0019 Score=54.00 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
....+....+|-++..+. +.....+...+..++.|.|||. ||||..++.+.++.
T Consensus 65 ~~l~~I~~diG~~~~~~w-~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSW-FSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHH
Confidence 445677788888866655 4456777888888999999999 69999999988754
No 167
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.18 E-value=0.0034 Score=50.57 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------CCChHHHHHHHHHHHHHHhhhhhHHHHh
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPL-------------------GQSTATAAQNANKWSGTSQLLPLLGAFV 96 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-------------------g~~~~~a~~~~~~~~~~~~~~~~~~G~L 96 (116)
+|.-+..+.+.+.+...||+.........+... -.+...-.-=..+..++-..+.++.|++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 466788888889999999998766655554321 1111122223456777888899999999
Q ss_pred hhcccchHHHHHHHHHH
Q 048637 97 GDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 97 aDr~iGRr~~i~~~~il 113 (116)
-|| +|||+++....++
T Consensus 405 ver-lGRKkTMal~l~~ 420 (528)
T KOG0253|consen 405 VER-LGRKKTMALSLIL 420 (528)
T ss_pred HHH-hcchhHHHHHHHH
Confidence 999 6999999887764
No 168
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.13 E-value=0.0033 Score=48.35 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
....++....+++.|+.+ .|.+. .........+...++.++.|+++|| +||||.+..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~ 287 (399)
T PRK05122 228 ASIGFGTIATFITLYYAA-RGWDG--AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLL 287 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-ccccc--chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 345566677788888764 45532 3344456666777788999999999 599998876654
No 169
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.12 E-value=0.0009 Score=54.07 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=57.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+..+|+...++++...+..+.+-...|+...+-+..|.+... .....+..++..++..+++++-|| +|||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence 446677777777776666654434344333334456777554 666677788888888999999999 599999999987
Q ss_pred HHh
Q 048637 113 FMS 115 (116)
Q Consensus 113 l~~ 115 (116)
.+.
T Consensus 368 ~m~ 370 (513)
T KOG0254|consen 368 GMS 370 (513)
T ss_pred HHH
Confidence 654
No 170
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.11 E-value=0.0036 Score=48.56 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----chHH-HHHHHHH
Q 048637 44 GVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-----GRYQ-TIFLLLL 112 (116)
Q Consensus 44 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-----GRr~-~i~~~~i 112 (116)
.+-..+...+.....-+|.|+++ .|++.++.......... .++.++.|+++|| + |||| .+..+.+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHH
Confidence 34456666666677789999996 59999999888655554 6889999999999 7 8876 5555444
No 171
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.11 E-value=0.0042 Score=49.90 Aligned_cols=79 Identities=19% Similarity=0.002 Sum_probs=58.8
Q ss_pred cCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-----hHHH
Q 048637 33 SGGWKSALF-IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-----RYQT 106 (116)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-----Rr~~ 106 (116)
..+++..+. +..+-+++.+. +....-++.++++.+|++.++.........+-..+- ++.|.++|| ++ ||+.
T Consensus 21 ~~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~-~~i~G~rRr~~ 97 (468)
T TIGR00788 21 SFHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDT-FPLFGYTKRWY 97 (468)
T ss_pred cCCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHh-cCCCCccchHH
Confidence 444554444 34466777777 777788889999999999999987776766666664 559999999 58 7887
Q ss_pred HHHHHHHH
Q 048637 107 IFLLLLFM 114 (116)
Q Consensus 107 i~~~~il~ 114 (116)
++++.++.
T Consensus 98 l~~~~~l~ 105 (468)
T TIGR00788 98 LVLSGLLG 105 (468)
T ss_pred HHHHHHHH
Confidence 77776543
No 172
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.11 E-value=0.005 Score=53.91 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 74 TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
....+..++.+...++.+++|+++|| +|||+++.
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~ 86 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAK 86 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHH
Confidence 35556667778888999999999999 59999763
No 173
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.08 E-value=1.3e-05 Score=62.77 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=54.8
Q ss_pred ccccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 28 VHRANSG--GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 28 ~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
.++.+++ +.+++...+.+........+....++..++.+..|.+.. ........+...++.+++.++.|| +|||+
T Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~ 317 (451)
T PF00083_consen 241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRK 317 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-ccccc
Confidence 4455544 235666666666666555444444555555556777776 444455566677788888999999 59999
Q ss_pred HHHHHHHHH
Q 048637 106 TIFLLLLFM 114 (116)
Q Consensus 106 ~i~~~~il~ 114 (116)
+++.+.++.
T Consensus 318 ~~i~~~~~~ 326 (451)
T PF00083_consen 318 LLIIGLLLM 326 (451)
T ss_pred ccccccccc
Confidence 998877543
No 174
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.07 E-value=0.0049 Score=49.03 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
++......+.....++....++|.|+++ .|++..++.....+..+...++.+++|+++||
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455555666777788899999875 79999999999999888899999999999997
No 175
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.07 E-value=0.0008 Score=54.09 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=42.7
Q ss_pred cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+..+.+.........++.+...++++++|.+||| +|||++++.+.++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~ 158 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLF 158 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHH
Confidence 4567788888889999999999999999999999 69999999988765
No 176
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.002 Score=51.91 Aligned_cols=89 Identities=13% Similarity=-0.006 Sum_probs=68.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc
Q 048637 25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTG---SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL 101 (116)
Q Consensus 25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i 101 (116)
+.|..+..+.|+|--+.++...+...+.||..- .+...++.++.|+|+++...+.+.+.+..-++-.+.|.+||| .
T Consensus 13 ~~p~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~ 91 (448)
T COG2271 13 RLPASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-S 91 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-C
Confidence 345555555565555666666667777777653 345566777889999999999999999999999999999999 5
Q ss_pred chHHHHHHHHHHH
Q 048637 102 GRYQTIFLLLLFM 114 (116)
Q Consensus 102 GRr~~i~~~~il~ 114 (116)
+.|+.+.++.++.
T Consensus 92 npr~fm~~gLils 104 (448)
T COG2271 92 NPRYFMAFGLILS 104 (448)
T ss_pred CCceeehHHHHHH
Confidence 9999888877653
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.011 Score=47.20 Aligned_cols=80 Identities=20% Similarity=0.097 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+..+..++......++-...-+.....+|.-.+ .+|.+..++.+.++.+.....++.|+-..+.|| +.||+++....+
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~-dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAA-DLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 334555555555555555565656566665554 699999999999999999999999999999999 599999988776
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
+.
T Consensus 87 lF 88 (394)
T COG2814 87 LF 88 (394)
T ss_pred HH
Confidence 53
No 178
>PRK12382 putative transporter; Provisional
Probab=97.00 E-value=0.0035 Score=48.18 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
....+.....+.+.|+.+ .|.+. +......+.+...++.++.|+++|| +||||.+..+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~ 288 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLV 288 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHH
Confidence 345556667788888865 46554 3334455666677888999999999 5999998877653
No 179
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0066 Score=49.78 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG 102 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG 102 (116)
+..+....-..+..++++.-..++|.|.. ..|+++.++.....+.++...++-++.|+++|+. .
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~ 361 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-G 361 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-c
Confidence 34444444556667788888899999998 7999999999999999999999999999999994 6
No 180
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0076 Score=47.92 Aligned_cols=71 Identities=14% Similarity=-0.008 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
-|....-.-.++..+|++..|+|.++.+ -|+|+.++.....+...++....+..=++++|. ..+|.+....
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~-~n~r~~~~~~ 280 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS-KNQRPLVVLA 280 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHH
Confidence 4556666678899999999999999985 799999999999999999999999999999985 5444444433
No 181
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.95 E-value=0.012 Score=45.77 Aligned_cols=68 Identities=7% Similarity=-0.115 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNL-ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l-~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
++......++....++....+. |.|. ++.|++..+.........+...++.++.|++.|| .+|+..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~~l~~ 286 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKLALAG 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHH
Confidence 3333333344444555556666 5555 5679999988888888888899999999999999 46554443
No 182
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.94 E-value=0.0079 Score=48.54 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----chHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-----GRYQTIF 108 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-----GRr~~i~ 108 (116)
|+.+..+.+.+......+.....+|.|++. .|.+..+......+... +++.++.|.++|| + ||||..+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr-~~~~~~Grrr~~l 84 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVGQA--YVFKFLWSPLMDR-YTPPFLGRRRGWL 84 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence 345666667677777888888889999875 58888777765323322 3688999999999 7 9998644
No 183
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.92 E-value=0.0056 Score=45.97 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=22.5
Q ss_pred hhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 87 QLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 87 ~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++.++.|+++|| +||||++..+.++.
T Consensus 49 ~i~~~~~G~l~dr-~g~r~~l~~~~~~~ 75 (394)
T TIGR00883 49 PLGAIVFGHFGDR-IGRKKTLVITLLMM 75 (394)
T ss_pred hhHHHHhhhhhhh-hhhHHHHHHHHHHH
Confidence 4577999999999 59999998887653
No 184
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.92 E-value=0.0036 Score=54.83 Aligned_cols=73 Identities=11% Similarity=-0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.++......++....++.+.+++|.|++..+|.+...+..+.....+...++.++.|+++|++ ++++.+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~ 298 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGA 298 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHH
Confidence 344444444555566667778999999999999999999999999999999999999999984 7666544433
No 185
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.92 E-value=0.0068 Score=46.71 Aligned_cols=71 Identities=15% Similarity=-0.006 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHH--HHHHHHHhhhhhHH-HHhhhcccchHHHHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNA--NKWSGTSQLLPLLG-AFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~--~~~~~~~~~~~~~~-G~LaDr~iGRr~~i~~~~ 111 (116)
+.....+-+.+...+.....++|.|+++ .|++..+..... ....+...+..|+. ++.+|| .||||.+++..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~ 76 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHH
Confidence 3455566678888888888999999986 599999888763 34455665555555 779999 59999964444
No 186
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.91 E-value=0.0084 Score=46.70 Aligned_cols=59 Identities=8% Similarity=-0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
........+|.|+++.+|+++.++........+...++.++.|++.|| .++++++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~ 278 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGI 278 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHH
Confidence 334455566778888899999999999988889999999999999999 59998877664
No 187
>PRK11462 putative transporter; Provisional
Probab=96.88 E-value=0.011 Score=47.38 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 48 AERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 48 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
+..............|.+..+|.+.. ...+...+.+...++.+++++++|| +|+|+++..+.
T Consensus 239 ~~~~~~~~~~~~~~y~~~y~~g~~~~-~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~ 300 (460)
T PRK11462 239 FNILAVCVRGGAMMYYVTWILGTPEV-FVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTN 300 (460)
T ss_pred HHHHHHHHHHhHhhhhhhhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH
Confidence 33333333333333344434554433 3345566677778888999999999 59999876443
No 188
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.85 E-value=0.015 Score=47.84 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.+|.+-.+. +++..+...-++-+. .++.-++.....+.....+-..++.+++|.++|| +.|||+++.+-++
T Consensus 12 Fr~lw~a~~iS---~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~ 84 (524)
T PF05977_consen 12 FRRLWIAQLIS---NLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLL 84 (524)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHH
Confidence 34455554444 333332222233233 3456778888888888888888899999999999 5999999887654
No 189
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.016 Score=46.52 Aligned_cols=81 Identities=16% Similarity=0.074 Sum_probs=63.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.+.++|+++........ ++.-+.+..-+-.++...+|+++.|...+..+-.+...+.=++-|.+.|| +|-|++..++.
T Consensus 9 k~~~~~~L~~S~~af~v-~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~ 86 (417)
T COG2223 9 KRIARRNLWLSTLAFDV-GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSM 86 (417)
T ss_pred ccchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHH
Confidence 45667777777655433 33333344556677778999999999999999999999999999999999 59999998888
Q ss_pred HHH
Q 048637 112 LFM 114 (116)
Q Consensus 112 il~ 114 (116)
++.
T Consensus 87 ~l~ 89 (417)
T COG2223 87 LLL 89 (417)
T ss_pred HHH
Confidence 763
No 190
>PRK09669 putative symporter YagG; Provisional
Probab=96.69 E-value=0.015 Score=45.87 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 51 FAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 51 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..........+.|.+..++.+. ..........+...++.+++++++|| +|+|+.+..+.+
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~ 302 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIV 302 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 3333333344444444455433 33334445556677788999999999 599999887664
No 191
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.014 Score=46.90 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+.-++..+..+.+......... --+...+++.++++..++..+..++.....+..+.+|++.+| +|+|+.++.|..++
T Consensus 11 ~~~~~v~~t~lFfl~G~~~~l~-diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~ 88 (422)
T COG0738 11 VKLAFVLLTSLFFLWGFITCLN-DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLY 88 (422)
T ss_pred ceeHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHH
Confidence 4445555555555555444433 445555667899999999999999999999999999999999 59999999998765
Q ss_pred h
Q 048637 115 S 115 (116)
Q Consensus 115 ~ 115 (116)
+
T Consensus 89 a 89 (422)
T COG0738 89 A 89 (422)
T ss_pred H
Confidence 3
No 192
>TIGR00898 2A0119 cation transport protein.
Probab=96.57 E-value=0.01 Score=47.19 Aligned_cols=34 Identities=24% Similarity=0.103 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 79 ANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 79 ~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..+..+...++.+++++++|| +|||+++.++.++
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~ 394 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLL 394 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 345566677788999999999 5999999887654
No 193
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.55 E-value=0.0031 Score=52.44 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+-.++..+++|.. ++|+++.+...++..-=++.++..|++|++|||| -++|.+.++..+
T Consensus 26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~ 85 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLL 85 (618)
T ss_pred cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHH
Confidence 34467788999997 5999999999999999999999999999999996 777777777654
No 194
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.49 E-value=0.011 Score=44.43 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
|-.+..++.+..+. .+.|.... +..-+++.+|++.++...+.....+...++ ++.|.+.|+ +|.+.++.+|++..
T Consensus 2 W~~l~a~~~v~~~~-Gt~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 2 WLSLVASIWVQLCS-GTTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLG 76 (250)
T ss_pred hhhHHHHHHHHHhc-Ccccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHH
Confidence 44444555554443 35565544 444566789999999999999999998875 888999999 59999999988753
No 195
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.45 E-value=0.022 Score=46.02 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 75 AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
...+.....+...++.+++|.++|+ +|||+++.++.++.
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~ 129 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLF 129 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 3678888999999999999999999 59999999888754
No 196
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.40 E-value=0.042 Score=42.78 Aligned_cols=68 Identities=15% Similarity=-0.072 Sum_probs=45.0
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 29 HRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
++.+|+ +.++......++....+|++..|+|+|+++ .|++.. +.....+.. ..+.+..++++|| +.||
T Consensus 186 ~~ll~~--~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~---~~g~~g~~~~~d~-~~r~ 253 (368)
T TIGR00903 186 GALAGR--KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAI---LAGLIGVAVIPDR-VARA 253 (368)
T ss_pred HHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHH---HHHHHHHHHhhHH-hhhh
Confidence 344443 445666677788888999999999999965 678864 333332333 3344556899999 4654
No 197
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.33 E-value=0.013 Score=44.42 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc----cchHHHHHH
Q 048637 59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF----LGRYQTIFL 109 (116)
Q Consensus 59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----iGRr~~i~~ 109 (116)
-+|.+++ +.|++.++....... ..... ..++.|.++||+ +||||.+++
T Consensus 10 ~~~~~~~-~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~ 61 (356)
T TIGR00901 10 TLPYWLR-SKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLV 61 (356)
T ss_pred HHHHHHH-HcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCCccHHHHH
Confidence 3555555 679999998887644 33333 388999999994 389997543
No 198
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.23 E-value=0.054 Score=43.00 Aligned_cols=67 Identities=12% Similarity=-0.049 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+......-....|.+.|+++..|.+.........+..+.-.+.-.+.+++--| +|-++++.++.+..
T Consensus 217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~ 283 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAY 283 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 33344444556888999987655887777777778888899999999999999 59999999998764
No 199
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.014 Score=47.67 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQTIFLLL 111 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~i~~~~ 111 (116)
.+.++.+- +..+..+..+..|++.|.+...|+++..+..+..++-+.-.+.=|+.|.++||. +||+|-.+...
T Consensus 14 ki~Yg~gd-~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g 89 (467)
T COG2211 14 KIGYGLGD-FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG 89 (467)
T ss_pred HHhhcchh-hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence 34444443 445566677889999999999999999999999999999999999999999962 37766655443
No 200
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.0051 Score=50.14 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=65.8
Q ss_pred CcccccCCCcccccccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh
Q 048637 18 DDCVDYRGRPVHRANSGGW-KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV 96 (116)
Q Consensus 18 ~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L 96 (116)
....+|.+.+..+..+..+ +.++....+.++--+.+-.=.+|.+-|+. .+|.+.+-...+-.+.=+...+..|+.|..
T Consensus 12 ~~~~~~~~s~~~~~~~ps~~~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~ 90 (498)
T KOG0637|consen 12 LLASESTQSSPFDLSRPSRLRKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSA 90 (498)
T ss_pred cccchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceeccccccc
Confidence 3344666665555544444 45555555555555555555567777776 599999988888888888888999999999
Q ss_pred hhcc---cchHHHHHHHHHH
Q 048637 97 GDSF---LGRYQTIFLLLLF 113 (116)
Q Consensus 97 aDr~---iGRr~~i~~~~il 113 (116)
|||- +||||-++....+
T Consensus 91 SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 91 SDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred ccccccccccccchHHHhhH
Confidence 9951 4999988776644
No 201
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.02 Score=46.95 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=46.5
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 61 ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 61 ~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
-..+.++++-+..+..++..+...+..+..|+.+.+.|| +|.|++.+.|+++.
T Consensus 69 ~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~ 121 (509)
T KOG2504|consen 69 FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVA 121 (509)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHH
Confidence 344556789999999999999999999999999999999 59999999998765
No 202
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.97 E-value=0.019 Score=46.25 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 71 STATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+..-+..+-..+.+...+..+..|-+|||| |||+++..+++..
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~v 108 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGV 108 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHH
Confidence 344556667788899999999999999996 9999999888654
No 203
>PRK10054 putative transporter; Provisional
Probab=95.96 E-value=0.025 Score=44.08 Aligned_cols=67 Identities=9% Similarity=-0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTG--PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~--~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.++....+.....+.+.|+.. +.+.+......+.....+......++.|++.|| .|+|+.+..+.++
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~ 283 (395)
T PRK10054 215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLC 283 (395)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHH
Confidence 343344444444566666643 345556555666666666666677888999999 5999988777643
No 204
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.94 E-value=0.0017 Score=50.70 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 73 ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
...........+...++.+++|+++|| +|||+++.++.++.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccc
Confidence 345667788888899999999999999 59999998877653
No 205
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.84 E-value=0.097 Score=40.20 Aligned_cols=50 Identities=10% Similarity=-0.109 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
....+.+.|+++.+|+++.+.........+...++.++.++++||+ |++.
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~ 274 (394)
T PRK11652 225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM 274 (394)
T ss_pred HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3445667788888999998888777777777777888888888884 7444
No 206
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.84 E-value=0.05 Score=44.38 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=53.7
Q ss_pred ccCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAE--RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~ 109 (116)
.|.|+|+.+++....+.+ +..-++-+.-...|.....| +...+.+...++.++..+..+.+-|+.|| +|-|....+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~ll 114 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLL 114 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHH
Confidence 355655554444333222 22222222234445555556 77778889999999999999999999999 599999998
Q ss_pred HHHH
Q 048637 110 LLLF 113 (116)
Q Consensus 110 ~~il 113 (116)
++.+
T Consensus 115 gt~l 118 (480)
T KOG2563|consen 115 GTVL 118 (480)
T ss_pred HHHH
Confidence 8864
No 207
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.77 E-value=0.12 Score=40.52 Aligned_cols=66 Identities=12% Similarity=-0.123 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh-hhcccchH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV-GDSFLGRY 104 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L-aDr~iGRr 104 (116)
.++.......+....++....+.|.|+++..|+++.+.........+...++..+.+.+ .|+ .++|
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~ 285 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPR 285 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-Cchh
Confidence 45555555555666677777889999999999999998887766666666666666654 455 3544
No 208
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=95.69 E-value=0.014 Score=37.27 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 82 WSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 82 ~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..+...++.+++|+++|| +|||+.+..+.+.
T Consensus 7 ~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~ 37 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDR-FGRKPVLLVGLFI 37 (141)
T ss_pred ehhHHHHHHhhHHHHHhh-cchhHHHHHHHHH
Confidence 455667788999999999 5999999887654
No 209
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=95.24 E-value=0.088 Score=42.27 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=47.1
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 58 SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 58 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
..+=-|--+.+|++..+.+..+........++..+.|++..|-.|.+++-.+|++..
T Consensus 229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~ 285 (403)
T PF03209_consen 229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG 285 (403)
T ss_pred HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344556666799999999999999999999999999999885579888888887653
No 210
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.51 Score=38.15 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
++.-..=-...+|+++|+.+..|+++.++...+..+-+...++=+++-++-.| +-..|.+.+.++
T Consensus 246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~ 310 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYAL 310 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence 33333334556899999999899999999999999999999999999999889 588888887774
No 211
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.09 E-value=0.18 Score=41.54 Aligned_cols=66 Identities=14% Similarity=0.040 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
++.+.....+...+|.+.++.+|.++..-..+..+..+.+.++.++.+++.+| +++++.+..+.++
T Consensus 228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~ 293 (524)
T PF05977_consen 228 FLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLL 293 (524)
T ss_pred HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHH
Confidence 33344444455678999999999999999999999999999999999999999 5998888776654
No 212
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.07 E-value=0.046 Score=46.87 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHH-HHHHHHHhhhhhHHHHhhhcc
Q 048637 40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNA-NKWSGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~~~G~LaDr~ 100 (116)
...++...++...+-+..+|+|-|+.+++|+++..+.... .+...+..++.+++|++.-|+
T Consensus 395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 4556777889999999999999999999999999999988 455556677999999998874
No 213
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.01 E-value=0.046 Score=44.86 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=69.0
Q ss_pred ccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637 22 DYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 22 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~ 100 (116)
|+......+..+.+||.+++.....+...+.++....-.-.|+++ ..+-+.+-...++....++..++.|++|+-+-|
T Consensus 19 ~~~~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k- 97 (488)
T KOG2325|consen 19 DSDSLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK- 97 (488)
T ss_pred CCCccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-
Confidence 456666667778899999999988888888777666666667764 256667778888888899999999999999999
Q ss_pred cch-HHHHHHHHHH
Q 048637 101 LGR-YQTIFLLLLF 113 (116)
Q Consensus 101 iGR-r~~i~~~~il 113 (116)
.|. |+-++.|.++
T Consensus 98 ~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 98 TGSVKKPLIVSFLI 111 (488)
T ss_pred cCCcccCHHHHHHH
Confidence 483 4444445543
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=94.95 E-value=0.11 Score=41.71 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGP---LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~---lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
|++|............|+..-...+.|.+.. .+.+........+...++..+...+..++-+| +|-|+.++++.+.
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 3455544444444455555555567776643 33445555666677777888888999999999 6999999998876
Q ss_pred Hh
Q 048637 114 MS 115 (116)
Q Consensus 114 ~~ 115 (116)
++
T Consensus 299 ~~ 300 (412)
T PF01306_consen 299 MA 300 (412)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 215
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.23 Score=40.42 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.9
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+.+.++.+-..+...+.....++.+.+|+++||+ |-|+++..+.++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~s 113 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLIS 113 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHH
Confidence 5778889999999999999999999999999995 9999998887653
No 216
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.87 E-value=0.32 Score=37.96 Aligned_cols=55 Identities=13% Similarity=-0.044 Sum_probs=31.3
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHHHhh-hhhHHHHhhhcccchHHHHHHHHH
Q 048637 56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQL-LPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~-~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
...++|.|+++..| ++.+.........+.... ..+++++..|| ++.++.+..+.+
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~ 282 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKR-FRLEHRLMAGLL 282 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHH
Confidence 45678999887666 555555554454444443 33444545455 576666555543
No 217
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.069 Score=43.79 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 77 QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 77 ~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.++.++.+...++.+++|+++||+ |||..+.+..++
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l 99 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLL 99 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHH
Confidence 345666777788889999999995 999888877654
No 218
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.49 E-value=0.01 Score=48.94 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcc
Q 048637 40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSF 100 (116)
Q Consensus 40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~ 100 (116)
....+....+....-++.+|+|.|+..++++++.++..+.....+ ...++.++||++-.|+
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~ 369 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF 369 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence 344556677777888899999999999999999999988866655 5566999999999884
No 219
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=94.32 E-value=0.39 Score=33.46 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=36.6
Q ss_pred HHHHHhccccCCCh--HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 59 NLITYLTGPLGQST--ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 59 ~l~~yl~~~lg~~~--~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..+.+... .+.+. ...............++.++.|.++||+ |||+.+..+..
T Consensus 24 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 77 (338)
T COG0477 24 ALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLL 77 (338)
T ss_pred HHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHH
Confidence 44444443 33333 4566677777777777779999999995 99988877764
No 220
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=92.49 E-value=0.9 Score=38.34 Aligned_cols=83 Identities=6% Similarity=-0.021 Sum_probs=57.1
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 30 RANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA---TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~---~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
+++|+ +|.+...+.+.+.....||.+..+.|+......+-+.. ..........+...++.++.|++.-+ +||-|.
T Consensus 304 ~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw 381 (599)
T PF06609_consen 304 RLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKW 381 (599)
T ss_pred HHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhH
Confidence 34443 56676667777888888999888999988776665543 34445556666677777888888877 587776
Q ss_pred HH-HHHHHH
Q 048637 107 IF-LLLLFM 114 (116)
Q Consensus 107 i~-~~~il~ 114 (116)
.+ ++++++
T Consensus 382 ~li~~~~~~ 390 (599)
T PF06609_consen 382 QLIFGSVLM 390 (599)
T ss_pred HHHHHHHHH
Confidence 64 444443
No 221
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.21 Score=40.58 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=59.7
Q ss_pred hhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH
Q 048637 5 DTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG 84 (116)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~ 84 (116)
|+|.+...||+..+ .+... ..|+..+++...+++-..+.+-+- +..-+|..++. -|.|-+ -+.++.+
T Consensus 6 ~~e~~~~~~~~~~~------~~~~~-~~~~d~~~illLl~LYllQGiP~G-L~~~iP~lL~a-k~vSyt----~~a~fS~ 72 (510)
T KOG3574|consen 6 DLESLNVDPNANWF------KKTHQ-TLKGDRSSILLLLFLYLLQGIPLG-LIGAIPLLLQA-KGVSYT----SQAIFSF 72 (510)
T ss_pred chhhhcCCCCCchh------hhcch-hhhhhhhhHHHHHHHHHHcCCchh-HhhhhHHHhcC-CCcchh----hhhhhhh
Confidence 56666666666533 22222 278888899999999888888764 55578888872 344433 3445556
Q ss_pred HHhh--hhhHHHHhhh-----cccchHHHHHH
Q 048637 85 TSQL--LPLLGAFVGD-----SFLGRYQTIFL 109 (116)
Q Consensus 85 ~~~~--~~~~~G~LaD-----r~iGRr~~i~~ 109 (116)
+.+. .-++.+.+-| | +||||.-++
T Consensus 73 ay~P~sLKllWaPiVDs~y~k~-~GrrksWvv 103 (510)
T KOG3574|consen 73 AYWPFSLKLLWAPIVDSVYSKR-FGRRKSWVV 103 (510)
T ss_pred hhhHHHHHHHHHhhhHHHHHHh-hccccceee
Confidence 6555 3477888888 9 699996543
No 222
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=90.72 E-value=1.2 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.004 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
...+-...-++...+..-+...-|.+..+...+.......+.++.-..|.++|+ +|||+.+.+..+
T Consensus 86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l 151 (528)
T KOG0253|consen 86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFL 151 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHH
Confidence 334444444444444444455678888888888888888888899999999999 699998877654
No 223
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=90.22 E-value=0.63 Score=37.95 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHH-HhhhcccchHHHHHHHHHH
Q 048637 59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGA-FVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G-~LaDr~iGRr~~i~~~~il 113 (116)
.++.|+...+|.+..+.............+..++.. .+.-. +|-++++..|...
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLS 317 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHH
Confidence 457788899999999999999999999999888777 77767 6999987777643
No 224
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=89.91 E-value=0.32 Score=40.17 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHH--------HHHHHHHHHhh-hhhHHHHhhhcccchHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQ--------NANKWSGTSQL-LPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~--------~~~~~~~~~~~-~~~~~G~LaDr~iGRr~ 105 (116)
|.+.++-..+.-+..-+++|....+...-+.+ .|..+.+... ...+...++.+ +..+..++.|+ +|||+
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~ 379 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKY 379 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHH
Confidence 55666667777777788888887777666653 3333322222 22233333333 66778889999 69999
Q ss_pred HHHHHHHHHh
Q 048637 106 TIFLLLLFMS 115 (116)
Q Consensus 106 ~i~~~~il~~ 115 (116)
.-+.|.++++
T Consensus 380 iq~~GF~~~~ 389 (538)
T KOG0252|consen 380 IQLMGFFIMT 389 (538)
T ss_pred HHHhhHHHHH
Confidence 9988877653
No 225
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=89.87 E-value=2.8 Score=26.44 Aligned_cols=50 Identities=16% Similarity=-0.044 Sum_probs=42.8
Q ss_pred HhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 63 yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.++.+++.+++..+.+.-.+...++.+.+.++.++ ..+++.+..+.+.
T Consensus 17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~ 66 (85)
T PF06779_consen 17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLL 66 (85)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 4566899999999999999999999999999999998 4778888777654
No 226
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=89.86 E-value=2.1 Score=34.62 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 57 GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 57 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
-..+..|++.+ |+++......-....+....++.++.++-.| +|-.|+=.++..
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~ 331 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLW 331 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHH
Confidence 34588999877 9999999999999999999999999999999 598777666554
No 227
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=89.59 E-value=0.71 Score=37.13 Aligned_cols=49 Identities=8% Similarity=-0.291 Sum_probs=43.7
Q ss_pred ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 65 TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 65 ~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
+..+|+++...........+...++..+.+.+.+| +|.|+++.++.++.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~ 328 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLY 328 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999 59999999888754
No 228
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=89.56 E-value=1.6 Score=35.60 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 82 WSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 82 ~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
......+..++-|.++||| |||..+......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~ 101 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRY-GRKVVLLLPLFG 101 (463)
T ss_pred hHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence 3566777889999999996 999998877653
No 229
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=89.52 E-value=1.8 Score=35.63 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=38.5
Q ss_pred cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..+|+...+-..+.+.+.+...++.+++|+|.|| ++-.+.+....+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~ 119 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGI 119 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHH
Confidence 4577888889999999999999999999999999 596666655544
No 230
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=89.21 E-value=0.71 Score=37.45 Aligned_cols=57 Identities=9% Similarity=-0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC-----ChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 47 MAERFAFCGTGSNLITYLTGPLGQ-----STATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg~-----~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
......+......++.|.++..+. .- .......+-.+...++.|+.|++.|| +|+|+
T Consensus 279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~ 340 (489)
T PRK10207 279 VVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTH-LGSKG 340 (489)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCC
Confidence 334445555556677777643222 21 12223333334455667778999999 59886
No 231
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=0.57 Score=38.12 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=41.1
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++-+.++.........+++.+..|+.|.+.|| +|+|-.+++|...+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vm 146 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVM 146 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHH
Confidence 367778888888899999999999999999999 69999999988654
No 232
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=87.38 E-value=1.7 Score=35.44 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 76 AQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
..+..++.++..+..|+-|-+||+- |+||.+.....
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~ 108 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFT 108 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHH
Confidence 4567788888888899999999995 88887766554
No 233
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=86.98 E-value=0.11 Score=40.59 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=42.8
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+..|+.+..|+.+.+..+...+..+....+..+.|-|+|+ .||||..+..++.
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycit 111 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCIT 111 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHH
Confidence 4456677789999999888888888888888999999999 6999987655543
No 234
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=85.39 E-value=1.2 Score=34.72 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh---------hhcccchHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV---------GDSFLGRYQT 106 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L---------aDr~iGRr~~ 106 (116)
+.+.++++=. .+-..--..++|+..|+++ .|+++..........++.-.+..|+.|.. -|| +|||+.
T Consensus 18 svf~yGvGHm-lNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~ 93 (412)
T KOG4830|consen 18 SVFAYGVGHM-LNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMS 93 (412)
T ss_pred eeeeechhHH-HhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceee
Confidence 3344444432 2333334577899999985 67777777788889999999999998744 468 588764
No 235
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=83.43 E-value=9.1 Score=28.98 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 73 ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.++..+.....+...+.+++.|+++|+ +|.+..+.+..
T Consensus 264 ~~asai~~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~ 301 (310)
T TIGR01272 264 SQGSGILCLAIVGGAIVPLLQGSLADC-LGIQLAFALPV 301 (310)
T ss_pred hhhHHHHHHHHhcchHHHHHHHHHHHh-ccchHHHHHHH
Confidence 344444566666778889999999999 59877665433
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=83.35 E-value=2.9 Score=33.57 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=45.9
Q ss_pred HhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 63 yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
=+++.+|++.+.+...+++=.++...+.|++.+|+-| +|..|.+..+.+++
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli 87 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLI 87 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHH
Confidence 3567799999999999999999999999999999999 69999999887754
No 237
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=80.52 E-value=2.6 Score=33.20 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=43.2
Q ss_pred chhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH
Q 048637 4 SDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA 73 (116)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~ 73 (116)
-|++.|+-+.|.+-+.-.+|++.|..-. -+.+..++...-.+..+.+..+++++ +..++....
T Consensus 184 pdesKL~A~~~e~a~~e~ywKrkp~Sl~------D~afl~Gislav~AVa~~Is~~l~~~-s~gl~~~~g 246 (384)
T COG5505 184 PDESKLKADGNEGASAESYWKRKPISLK------DIAFLAGISLAVVAVAMKISGYLKSI-SHGLLTGLG 246 (384)
T ss_pred ccHHHHhhhhhhhhhhhhhhhcCCccHH------HHHHHhhHHHHHHHHHHHHHhhcccc-ccccccccc
Confidence 4777788777766555567887776543 45667777777777888888899985 555554433
No 238
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=80.18 E-value=14 Score=30.35 Aligned_cols=80 Identities=10% Similarity=-0.119 Sum_probs=52.5
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHH----------HHHHHHHHHHHHhhhhhHHHHhhh
Q 048637 30 RANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTAT----------AAQNANKWSGTSQLLPLLGAFVGD 98 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~----------a~~~~~~~~~~~~~~~~~~G~LaD 98 (116)
+.+|+-||.+...+.+.++...+++.+..|...|.-+ ..|-++.+ ......+..+...+..++--++..
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998898888763 34433211 122233333444444455667788
Q ss_pred cccch-HHHHHHH
Q 048637 99 SFLGR-YQTIFLL 110 (116)
Q Consensus 99 r~iGR-r~~i~~~ 110 (116)
| +|+ |++..++
T Consensus 331 ~-~g~~k~~~~~s 342 (477)
T TIGR01301 331 G-WGAGKRLWGIV 342 (477)
T ss_pred H-hccchhHHHHH
Confidence 8 585 6665555
No 239
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=80.08 E-value=2.9 Score=34.07 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHHhccccCC---ChHHHH----HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 56 TGSNLITYLTGPLGQ---STATAA----QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 56 ~~~~l~~yl~~~lg~---~~~~a~----~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.+.+.|.|+++..+- ++.++. ....++.+...+..|+-|-++|.. |+||-.....
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f 95 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFF 95 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHH
Confidence 334567777665444 443333 344566667777888889999995 8776654433
No 240
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=77.39 E-value=21 Score=24.78 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=35.2
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
-++++......+.+..+...+..+++..+-.+ +|.|..+++|.+..
T Consensus 32 ~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y 77 (156)
T PF05978_consen 32 SSISAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGY 77 (156)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHH
Confidence 44555555666667777777788888889999 69999999998754
No 241
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=74.71 E-value=19 Score=29.81 Aligned_cols=66 Identities=14% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
+++....-......+|.+.+.+--=+ ..-|++...+..+.....+...++.+++|.++||. ...|.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~ 333 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKL 333 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHH
Confidence 34444444444445555554443222 24577778888888888999999999999999994 65554
No 242
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.56 E-value=3.8 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=15.1
Q ss_pred hhHHHHhhhcccchHHHHHHHHH
Q 048637 90 PLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 90 ~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
....||+-|||+|-.+..++..+
T Consensus 59 Ga~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 59 GAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHH
Confidence 34567778887777776555543
No 243
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=71.73 E-value=51 Score=27.12 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----hHHHHHHHHHHHHH-HhhhhhHHHHhhhcccchHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQS-----TATAAQNANKWSGT-SQLLPLLGAFVGDSFLGRYQTIFL 109 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~-----~~~a~~~~~~~~~~-~~~~~~~~G~LaDr~iGRr~~i~~ 109 (116)
++.++......++-...|+.+-. ++..++.+ .......-+...+. ..++.++.+++++| ++|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 34455554444444444443321 23444442 23333334333333 33447899999999 599998876
Q ss_pred HHH
Q 048637 110 LLL 112 (116)
Q Consensus 110 ~~i 112 (116)
...
T Consensus 80 ~~~ 82 (472)
T TIGR00769 80 VIS 82 (472)
T ss_pred HHH
Confidence 543
No 244
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=71.36 E-value=1.3 Score=36.70 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 51 FAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 51 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
...++...-..+-+.+.++++.+++..+...+-+...+..++..+.++|. -|-|.+-+|.+++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~ 78 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLM 78 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHH
Confidence 33444444444455667999999999999999999999999999999993 5555555555443
No 245
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=71.07 E-value=42 Score=26.95 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=44.0
Q ss_pred ccccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637 28 VHRANSG--GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ 105 (116)
Q Consensus 28 ~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~ 105 (116)
+...++. ..+..++.....+..+..+|++..... .+|.+...... .............+.+-|+ +|||.
T Consensus 311 ~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~-----~lg~~~~~~~~---~~~~~~~p~~~~~~~~~~~-~gR~~ 381 (521)
T KOG0255|consen 311 FLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVS-----GLGGNIYLNFT---LSGLVELPAYFRNGLLLPE-FGRRP 381 (521)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhh-----hcCchHHHHHH---HHHHHHhhHHHHHHHHHHH-hCcHH
Confidence 3444444 234555555555555666665543332 24444432222 2223666666777899999 59999
Q ss_pred HHHHHHHH
Q 048637 106 TIFLLLLF 113 (116)
Q Consensus 106 ~i~~~~il 113 (116)
....+..+
T Consensus 382 ~~~~~~~~ 389 (521)
T KOG0255|consen 382 PLFLSLFL 389 (521)
T ss_pred HHHHHHHH
Confidence 98877654
No 246
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=71.03 E-value=12 Score=26.10 Aligned_cols=10 Identities=30% Similarity=-0.071 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 048637 37 KSALFIIGVE 46 (116)
Q Consensus 37 ~~~~~~~~~~ 46 (116)
+.++....+.
T Consensus 72 kslL~sA~Lv 81 (150)
T COG3086 72 KSLLKSALLV 81 (150)
T ss_pred ccHHHHHHHH
Confidence 4444444443
No 247
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=70.51 E-value=14 Score=20.81 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=19.1
Q ss_pred HHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 84 GTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 84 ~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
++..+.....|+..|+.+|..+...+..+
T Consensus 11 ~~~i~~g~~~G~~lD~~~~t~p~~~~~g~ 39 (55)
T PF09527_consen 11 AAPILVGFFLGYWLDKWFGTSPWFTLIGL 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 34445566778888888888666655443
No 248
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=67.78 E-value=24 Score=21.11 Aligned_cols=37 Identities=19% Similarity=-0.005 Sum_probs=30.7
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
+|.+..++...-........+-..+.-|+=||+..|+
T Consensus 29 ~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r~ 65 (67)
T PF05232_consen 29 LGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPRQ 65 (67)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6888888888888888888888899999999975543
No 249
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=66.02 E-value=13 Score=29.65 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=35.1
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-----hHHHHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-----RYQTIFLLLLF 113 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-----Rr~~i~~~~il 113 (116)
...|++.++|+++++......+ ...-...-|+.|.++|.+ - ||+-++++.++
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~-~~lPw~~Kp~~g~lsD~~-pi~G~rr~~Y~~i~~~~ 68 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSL-ASLPWSIKPLYGLLSDSF-PIFGYRRKPYMIIGWLL 68 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HhCchHHhhhHHhhcccc-cccCCcchHHHHHHHHH
Confidence 4456788899999987765533 333345679999999994 4 55555555554
No 250
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=64.61 E-value=0.71 Score=36.55 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=37.5
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT 106 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~ 106 (116)
+.++.+....+..++.+....+++-=..+.++++||+-||.+|-|-.
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~g 112 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLG 112 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHH
Confidence 56666666777777778888888888889999999999998886543
No 251
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=63.67 E-value=48 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.010 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc----c-----cCC--ChHHHHHHHHHHHHHHhhhhhHH----HHhhhcccchHHHHHH
Q 048637 45 VEMAERFAFCGTGSNLITYLTG----P-----LGQ--STATAAQNANKWSGTSQLLPLLG----AFVGDSFLGRYQTIFL 109 (116)
Q Consensus 45 ~~~~~~~~~y~~~~~l~~yl~~----~-----lg~--~~~~a~~~~~~~~~~~~~~~~~~----G~LaDr~iGRr~~i~~ 109 (116)
..+.....+|....-+++++.. . .|+ +..... .+-.+...++.|+. +++.|| ++..+.+.+
T Consensus 280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~---s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~ 355 (500)
T PRK09584 280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQ---ALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAI 355 (500)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHH---HHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHH
Confidence 3445667777777777777553 1 122 233333 23333333343444 777777 477677777
Q ss_pred HHHHH
Q 048637 110 LLLFM 114 (116)
Q Consensus 110 ~~il~ 114 (116)
|.++.
T Consensus 356 G~~l~ 360 (500)
T PRK09584 356 GMVLC 360 (500)
T ss_pred HHHHH
Confidence 66543
No 252
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=63.06 E-value=33 Score=27.78 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHHHhccc-cCCChHHHHHHH-HHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 57 GSNLITYLTGP-LGQSTATAAQNA-NKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 57 ~~~l~~yl~~~-lg~~~~~a~~~~-~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
-.|+.-|++.+ .|++..+...-+ =+..=...+..++...+.|. +|.|++++++++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~ 80 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALS 80 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 35788899887 899988876443 23333444466778899999 6999999998864
No 253
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=61.99 E-value=56 Score=26.15 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=13.7
Q ss_pred CcchhhhhhhcccccCC
Q 048637 2 DISDTETLMLQRQDTVD 18 (116)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (116)
|..|.+.-|+|-++++.
T Consensus 190 eL~~Dp~yq~rl~~g~~ 206 (364)
T PF03605_consen 190 ELDDDPEYQERLADGLV 206 (364)
T ss_pred ccccCHHHHHHHhcccc
Confidence 66777889999998874
No 254
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=60.40 E-value=47 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=15.3
Q ss_pred ccCChHHHHHHHHHHHHHHHHH
Q 048637 32 NSGGWKSALFIIGVEMAERFAF 53 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~ 53 (116)
+|..||.+.+++++.....+..
T Consensus 37 ~k~pwK~I~la~~Lli~G~~li 58 (115)
T PF05915_consen 37 VKIPWKSIALAVFLLIFGTVLI 58 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899988887776655543
No 255
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=58.43 E-value=40 Score=27.61 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYL-TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR 103 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl-~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR 103 (116)
..+..+++...-....|....+.+.++ +..+|+++.+...+.....+.+.+....-+...||+.|.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~ 327 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN 327 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccc
Confidence 334444444433334444445555555 567999999999999888888888888888888886443
No 256
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=57.08 E-value=6 Score=32.74 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHhc---cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 59 NLITYLT---GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 59 ~l~~yl~---~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
+.|.++. ...|.+..+......+..++..++.++||.++||
T Consensus 266 w~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~ 309 (493)
T KOG1330|consen 266 WAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK 309 (493)
T ss_pred hhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHH
Confidence 4555543 2356777788888888999999999999999999
No 257
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=56.75 E-value=20 Score=22.70 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCcchhhhhhhcccccC
Q 048637 1 MDISDTETLMLQRQDTV 17 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (116)
||...||-|||+|.+-+
T Consensus 1 md~g~ke~lme~pp~ys 17 (93)
T PF08999_consen 1 MDVGSKEVLMERPPDYS 17 (93)
T ss_dssp -----------------
T ss_pred CCccchhhhhcCCCccc
Confidence 79999999999987553
No 258
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=56.31 E-value=48 Score=20.81 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=28.6
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 048637 28 VHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG 69 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg 69 (116)
+++..|...+-.+....+.+....++-.+..|.|..+...+.
T Consensus 7 f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~ 48 (91)
T PF04341_consen 7 FQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVF 48 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCccc
Confidence 455556656655666666666677777777888888876654
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=56.10 E-value=1.1e+02 Score=24.88 Aligned_cols=53 Identities=15% Similarity=-0.048 Sum_probs=31.9
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
.+.|+..-..-+---.......-.+...++.+.-|..-||. .|.+++..+.+.
T Consensus 25 ~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~ 77 (432)
T PF06963_consen 25 VPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVV 77 (432)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHH
Confidence 44444433222333334444455556666777778888995 999998877653
No 260
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=54.70 E-value=58 Score=21.30 Aligned_cols=67 Identities=12% Similarity=-0.032 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
+.+.++.+.....+-+.....+..++..| .++++..... ...+...++.+++|+++-|..++|..+.
T Consensus 3 ~~~~vl~g~~~~~~~tl~~~l~~a~ll~~----~~~~e~~~~~---~~~~i~~ls~~~GG~~a~~~~~~kG~l~ 69 (116)
T PF12670_consen 3 NLSAVLKGLLVAYIITLILLLLLALLLYF----TSLSESILPW---LVVIIYILSVFIGGFYAGRKAGSKGWLH 69 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 34555555555555444444443333333 3466654443 3445555666778888888645555443
No 261
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=53.19 E-value=51 Score=20.18 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637 77 QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL 111 (116)
Q Consensus 77 ~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~ 111 (116)
.......+...++++++|++.|. .|.+..+....
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 124 (141)
T TIGR00880 91 LMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLA 124 (141)
T ss_pred HHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHH
Confidence 34456667778888999999999 59877766544
No 262
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=50.79 E-value=64 Score=21.25 Aligned_cols=63 Identities=17% Similarity=0.008 Sum_probs=33.2
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 30 RANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
+.++++.. ++..........++|..+..++.-++...+..=+....... ....-++-|.+|||
T Consensus 43 r~l~~~~F-i~Rt~~FIlicAFGYGll~v~~tP~l~~~L~~~~~~~l~~~------vl~~F~~iG~lAqR 105 (106)
T PF11872_consen 43 RLLSGYHF-ILRTLAFILICAFGYGLLIVWLTPLLARQLAQLPNYWLAPV------VLLSFILIGVLAQR 105 (106)
T ss_pred HHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH------HHHHHHHHHHHhcc
Confidence 33444432 34444444556777777888888888765433332222111 11122445778887
No 263
>PRK11375 allantoin permease; Provisional
Probab=49.43 E-value=1.4e+02 Score=24.48 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.8
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG 102 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG 102 (116)
.+|++..++..+..++.++..+..-+-|+.+-|+ |
T Consensus 54 ~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-G 88 (484)
T PRK11375 54 ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-G 88 (484)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHhccccccc-C
Confidence 3799999999999998888888777778777774 5
No 264
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=46.10 E-value=41 Score=27.82 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhc
Q 048637 77 QNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 77 ~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
...+...++..++.+++|+.|-|
T Consensus 297 ~l~t~~i~~y~~~~~iaGy~S~~ 319 (521)
T PF02990_consen 297 SLLTAAIILYALTSFIAGYVSAR 319 (521)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555566666677776665
No 265
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.43 E-value=11 Score=30.81 Aligned_cols=77 Identities=12% Similarity=-0.000 Sum_probs=45.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637 24 RGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR 103 (116)
Q Consensus 24 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR 103 (116)
+..|..+.++.- . ++...+.....+...-.+-.-++.+..+...-+.-+...+-.-..+...+++.+.|.++||+ |.
T Consensus 259 ~~~~~~~Ll~dP-~-I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~ 335 (464)
T KOG3764|consen 259 QGTPMWSLLMDP-Y-ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PH 335 (464)
T ss_pred cCccHHHHHhCc-h-HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-Cc
Confidence 445555655432 2 22222222222333333334466666676775555666666677788888999999999995 93
No 266
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=43.82 E-value=1.2e+02 Score=22.75 Aligned_cols=23 Identities=17% Similarity=-0.059 Sum_probs=15.3
Q ss_pred cccccCChHHHHHHHHHHHHHHH
Q 048637 29 HRANSGGWKSALFIIGVEMAERF 51 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (116)
++.+|+||+++..++.+....+.
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i 108 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSV 108 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888887766554443
No 267
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=42.63 E-value=1.5e+02 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=29.9
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~ 100 (116)
++|++..++.....++.....+...+-|..+-|+
T Consensus 68 ~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~ 101 (497)
T COG1953 68 ELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY 101 (497)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 3899999999999999999999888888877774
No 268
>PRK03612 spermidine synthase; Provisional
Probab=42.36 E-value=2e+02 Score=23.85 Aligned_cols=62 Identities=16% Similarity=-0.036 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
+.+.+..++++..+-...|=.+ ....+...+|-+......++.++.+...++..++|+++++
T Consensus 15 ~~~~l~~~~f~sg~~~L~yEv~---~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 15 DRALLLAAVFVCAACGLVYELL---LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4454555555444333333333 3334444478888888888888888888888777777644
No 269
>PRK11380 hypothetical protein; Provisional
Probab=41.63 E-value=1.1e+02 Score=24.41 Aligned_cols=37 Identities=8% Similarity=-0.116 Sum_probs=19.9
Q ss_pred hhhhhhhcccccCCcccccCC--CcccccccCChHHHHH
Q 048637 5 DTETLMLQRQDTVDDCVDYRG--RPVHRANSGGWKSALF 41 (116)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~ 41 (116)
.|+-||.+|.+---.-..|+- .|+....++..+.+++
T Consensus 2 ~~~~lqn~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (353)
T PRK11380 2 KKVLLQNHPGSEKYPVNGWEIFNSNFERMIKENKAMLLC 40 (353)
T ss_pred chhhhhcCCCcccCCcchhhhhccHHHHHHHHHHHHHHH
Confidence 367777777655433334443 4555665555554433
No 270
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=39.66 E-value=42 Score=27.17 Aligned_cols=46 Identities=13% Similarity=-0.121 Sum_probs=32.7
Q ss_pred ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-----hHHHHHHHHH
Q 048637 65 TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-----RYQTIFLLLL 112 (116)
Q Consensus 65 ~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-----Rr~~i~~~~i 112 (116)
..+++++..-....+.+-.+++ +.-+..|+.||+. + ||.-++++..
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~ 57 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGT 57 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHH
Confidence 4568888877776665555444 4678999999995 8 7776666553
No 271
>PRK10711 hypothetical protein; Provisional
Probab=39.43 E-value=1.6e+02 Score=22.06 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=15.5
Q ss_pred cccccCChHHHHHHHHHHHHHHH
Q 048637 29 HRANSGGWKSALFIIGVEMAERF 51 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (116)
++.+|+|++++..++.+....+.
T Consensus 81 ~~~lk~~~~~I~~~~~vG~~v~i 103 (231)
T PRK10711 81 LHQIRARWKSIISICFIGSVVAM 103 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568888888887766554443
No 272
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.73 E-value=1.6e+02 Score=21.71 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=13.3
Q ss_pred ccccCChHHHHHHHHHHHHHH
Q 048637 30 RANSGGWKSALFIIGVEMAER 50 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~ 50 (116)
+..|+|++++...+......+
T Consensus 71 ~~l~~~~~~il~~~~~g~~~~ 91 (215)
T PF04172_consen 71 RLLKKNWIPILVGVLVGSLVS 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445777887777766554433
No 273
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.71 E-value=1.6e+02 Score=21.88 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=14.6
Q ss_pred cccccCChHHHHHHHHHHHHHHH
Q 048637 29 HRANSGGWKSALFIIGVEMAERF 51 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (116)
++.+|+|++++..++.+....+.
T Consensus 80 ~~~lk~~~~~Il~~~~~G~~~~~ 102 (226)
T TIGR00659 80 LPQIKKYWKEIILNVAVGSVIAI 102 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888777665544333
No 274
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=38.41 E-value=88 Score=26.12 Aligned_cols=77 Identities=12% Similarity=-0.017 Sum_probs=51.4
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChHHH---------------HHHHHHHHHHHhhhhhHH
Q 048637 31 ANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGP--LGQSTATA---------------AQNANKWSGTSQLLPLLG 93 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a---------------~~~~~~~~~~~~~~~~~~ 93 (116)
.+++.|+++...+...++...+.+....|..-|+-++ .|-++.+. .+-+++..+...+....-
T Consensus 273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~ 352 (498)
T KOG0637|consen 273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV 352 (498)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 4577788999999888888888887777777665432 22222211 233456666777778888
Q ss_pred HHhhhcccchHHHHH
Q 048637 94 AFVGDSFLGRYQTIF 108 (116)
Q Consensus 94 G~LaDr~iGRr~~i~ 108 (116)
-++.+| +|-|+.+.
T Consensus 353 ~~l~~~-~g~r~~y~ 366 (498)
T KOG0637|consen 353 EKLSRK-FGTRKRYW 366 (498)
T ss_pred HHHHHh-cCcceEEe
Confidence 999999 59444433
No 275
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=37.77 E-value=1e+02 Score=19.21 Aligned_cols=70 Identities=17% Similarity=0.016 Sum_probs=35.7
Q ss_pred cCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc--cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 33 SGGWKSAL-FIIGVEMAERFAFCGTGSNLITYLT--GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~~~~~y~~~~~l~~yl~--~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
+.|||.-. +...+..+..+..|+...++..-+. +-.|+|-.=-. ..-.+.++..+.+.+..+..|| +-||
T Consensus 4 ~~yWr~n~rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~-aaQGsi~~fviLi~~Ya~~mnr-lD~~ 76 (81)
T PF13937_consen 4 RAYWRKNLRLIAILLAIWFVVSFGVGILFADELNQITFGGFPLGFWF-AAQGSIIVFVILIFVYAWRMNR-LDRK 76 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHH-HHHhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44554333 3333444445566666333333332 23566654222 2224444555566777888888 5766
No 276
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=35.60 E-value=1.6e+02 Score=22.25 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=27.7
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048637 29 HRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG 66 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~ 66 (116)
+...|.|++.+...+.+...|+... ....++.-|..+
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~-l~yPl~~G~AIn 38 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLL-LLYPLFIGFAIN 38 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3457899999999999999999765 355556556554
No 277
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.07 E-value=1.6e+02 Score=20.65 Aligned_cols=71 Identities=11% Similarity=-0.069 Sum_probs=35.3
Q ss_pred CcccccccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 26 RPVHRANSG-GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 26 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
..+-+++.+ ..|.+.+.+++=.+..++.+.++-++... ....+++....... ...+...+..+-.|.||-+
T Consensus 51 ~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~--~~~dvP~~~~~~~S-~~~Fg~gllGisYGilSaS 122 (153)
T PF11947_consen 51 SAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSR--QIVDVPPWAVLLVS-LVFFGLGLLGISYGILSAS 122 (153)
T ss_pred cccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhc--cccccCchHHHHHH-HHHHHHHHHhhhhhhcccc
Confidence 345455433 34666666666555554444343333333 23556665555444 3333333444556777655
No 278
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=33.92 E-value=1.4e+02 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.9
Q ss_pred cccccCChHHHHHHHHHHHHHHHH
Q 048637 29 HRANSGGWKSALFIIGVEMAERFA 52 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~ 52 (116)
++..|+||+++..++++..+-+..
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~ 106 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAII 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999998888776554443
No 279
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.39 E-value=28 Score=30.39 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
|.++.+..+..+.-..+.+......+-+...++++.+++..+...+-+...+..++..|.+-|. =|-|.+-+|++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLM 172 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHH
Confidence 3344444333333333334444455555667999999999999999999999999999999993 6666665665544
No 280
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=33.23 E-value=2.1e+02 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
-.++......+..+..++.....++||+++=|
T Consensus 362 ~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k 393 (521)
T PF02990_consen 362 SAIPFGTILFLIALWFFVSIPLTFLGGYFGFK 393 (521)
T ss_pred cccchHHHHHHHHHHHHHhhhhhhcchhhhcC
Confidence 45677777777888888888899999988855
No 281
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.78 E-value=1.2e+02 Score=19.79 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=5.5
Q ss_pred HHHHHhccccCCC
Q 048637 59 NLITYLTGPLGQS 71 (116)
Q Consensus 59 ~l~~yl~~~lg~~ 71 (116)
++=.|+-..++-+
T Consensus 61 ~lG~WLD~~~~t~ 73 (100)
T TIGR02230 61 AVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHhhcCCC
Confidence 3444444444433
No 282
>PRK08601 NADH dehydrogenase subunit 5; Validated
Probab=31.82 E-value=2.7e+02 Score=23.32 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=37.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637 32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS 99 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr 99 (116)
+++++..-+.++.+.......|+.........+++..-...........+..+...++.++++|.+-|
T Consensus 402 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (509)
T PRK08601 402 FGEGRMGRIAGLIVLAGVALIYFIVHNSFYKWLHTIMYQSVQPPASAVIIVIAILLFGSLLSIWVARR 469 (509)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555666666566666666666666555555322222222223345556666677777887644
No 283
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.46 E-value=52 Score=23.04 Aligned_cols=35 Identities=6% Similarity=0.007 Sum_probs=24.2
Q ss_pred cccccCCCcccccccCChHHHHHHHHHHHHHHHHH
Q 048637 19 DCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAF 53 (116)
Q Consensus 19 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (116)
..+|+.+.++++..-+.|..++.+..+....+..+
T Consensus 113 e~~~~~~~~lKellGH~p~eV~~G~~lGI~i~~i~ 147 (153)
T COG1963 113 EKKDFDKKRLKELLGHTPLEVFAGLLLGILIAWIF 147 (153)
T ss_pred hhccCCHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 35678888888887777888887776655444333
No 284
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=30.35 E-value=1.3e+02 Score=24.80 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637 60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL 110 (116)
Q Consensus 60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~ 110 (116)
...++...-..+...-.....+..+-.......+||+-+- +||++..+-+
T Consensus 345 ~~~~~~~r~~~~~~k~~l~~~i~~~pl~~ia~~~GW~vtE-vGRQPWvVyg 394 (457)
T COG1271 345 LALWLTLRGRIDQSKWLLKALILAIPLPWIAIEAGWIVTE-VGRQPWVVYG 394 (457)
T ss_pred HHHHHHhcCccccccHHHHHHHHHhHHHHHHHHhhHHHHh-hcCCCceEec
Confidence 3333333333243444444555555556677889999999 5999876544
No 285
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.47 E-value=2.8e+02 Score=22.84 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=24.8
Q ss_pred cCCChHHHHHHHHHHHH-HHhhhhhHHHHhh---hcccchHHHHHHHHHH
Q 048637 68 LGQSTATAAQNANKWSG-TSQLLPLLGAFVG---DSFLGRYQTIFLLLLF 113 (116)
Q Consensus 68 lg~~~~~a~~~~~~~~~-~~~~~~~~~G~La---Dr~iGRr~~i~~~~il 113 (116)
.+.....-..+..+..+ ...++..+.+.++ ++ +||++++.++.++
T Consensus 273 ~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~ 321 (461)
T KOG3098|consen 273 LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIII 321 (461)
T ss_pred ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHH
Confidence 44444433333333333 3344556666666 55 4888888877764
No 286
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=29.27 E-value=38 Score=27.38 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=34.6
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh
Q 048637 31 ANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQST 72 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~ 72 (116)
++.-.||-.++++.+.+.-+..++++..|+..|.+..+..+.
T Consensus 57 lVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~ 98 (400)
T KOG3827|consen 57 LVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP 98 (400)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC
Confidence 344568888888999999999999999999999988766655
No 287
>COG3162 Predicted membrane protein [Function unknown]
Probab=27.53 E-value=1.8e+02 Score=19.00 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=21.7
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 048637 28 VHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG 69 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg 69 (116)
.++.+|+..+-.+..-.+.+...+++-.+..|-|-++-..+.
T Consensus 15 f~eLv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~ 56 (102)
T COG3162 15 FRELVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLF 56 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCccc
Confidence 455555444433444445555555555555566656555443
No 288
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=26.99 E-value=63 Score=20.18 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=6.2
Q ss_pred HHhhhcc---cchHHH
Q 048637 94 AFVGDSF---LGRYQT 106 (116)
Q Consensus 94 G~LaDr~---iGRr~~ 106 (116)
++++||. +|+||.
T Consensus 17 A~~GD~iG~kvGKkrl 32 (79)
T PF11283_consen 17 AYLGDRIGSKVGKKRL 32 (79)
T ss_pred HHHHHHHHHHHhHHHh
Confidence 4455652 245554
No 289
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=26.81 E-value=2.5e+02 Score=20.43 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=31.2
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.-+++............+.+....++.=++|-| +|....+.+|.+
T Consensus 123 ~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~-~g~~~si~ig~~ 167 (248)
T TIGR03733 123 VANLPLSLFLIAALLLIIGSLFLYIIHLFVSFA-FGMGASIGIGIV 167 (248)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence 345666555555555566677777888899999 598877777664
No 290
>smart00019 SF_P Pulmonary surfactant proteins. Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines
Probab=26.03 E-value=40 Score=23.80 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.6
Q ss_pred CCcchhhhhhhcccccCC
Q 048637 1 MDISDTETLMLQRQDTVD 18 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (116)
||...||-|||+|.+-+.
T Consensus 1 md~gskevlme~PPdYSa 18 (191)
T smart00019 1 MDVGSKEVLMESPPDYSA 18 (191)
T ss_pred CCcccceeeccCCCcccc
Confidence 899999999999986644
No 291
>COG2119 Predicted membrane protein [Function unknown]
Probab=25.44 E-value=2.7e+02 Score=20.28 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 77 QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 77 ~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
..+..-..++.+....|.++|+| +.-|++-.++.++
T Consensus 138 Gt~lg~~l~s~laVl~G~~ia~k-i~~r~l~~~aall 173 (190)
T COG2119 138 GTTLGMILASVLAVLLGKLIAGK-LPERLLRFIAALL 173 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 33444455677788889999999 6988888777764
No 292
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=25.32 E-value=3.9e+02 Score=22.06 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 75 AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
.........+...++++++|++.+++ |-+..+..+.+
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaai 176 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAV 176 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHH
Confidence 33444555667888999999999994 98888766543
No 293
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=24.04 E-value=3.2e+02 Score=21.52 Aligned_cols=40 Identities=20% Similarity=0.061 Sum_probs=29.8
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHH
Q 048637 67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTI 107 (116)
Q Consensus 67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i 107 (116)
.+|++..++.....++.++..+..-+.|..+=|+ |-+.++
T Consensus 36 ~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v 75 (440)
T PF02133_consen 36 ALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMV 75 (440)
T ss_dssp CCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchh
Confidence 5799999999999999988888888888888885 755544
No 294
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=23.94 E-value=3.8e+02 Score=21.46 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccC
Q 048637 47 MAERFAFCGTGSNLITYLTGPLG 69 (116)
Q Consensus 47 ~~~~~~~y~~~~~l~~yl~~~lg 69 (116)
......+.-..+.++.|..+..+
T Consensus 282 ~~~~~~~~Q~~s~l~l~~~~~~~ 304 (475)
T TIGR00924 282 VVFWVLYAQMPTSLNFFADNNMH 304 (475)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcc
Confidence 34344444455556777655433
No 295
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=22.64 E-value=1.6e+02 Score=26.36 Aligned_cols=58 Identities=9% Similarity=-0.158 Sum_probs=29.3
Q ss_pred ccCChHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHhccccCCChHHHHHHHHHHHHHHhhh
Q 048637 32 NSGGWKSALFIIGVEMAERFAF--CG-----TGSNLITYLTGPLGQSTATAAQNANKWSGTSQLL 89 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~--y~-----~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~ 89 (116)
+|+|||.++...+-.+..+..- +. ++.++.+.+....-++..+--....++.++...+
T Consensus 279 VrnYWRGFFAAtcsA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllG 343 (931)
T KOG0476|consen 279 VRNYWRGFFAATCSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLG 343 (931)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhccc
Confidence 4778887776655444444321 11 3444555555455555555554444444444333
No 296
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.60 E-value=2.7e+02 Score=21.03 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 048637 48 AERFAFCGTGSNLITYLTGPL 68 (116)
Q Consensus 48 ~~~~~~y~~~~~l~~yl~~~l 68 (116)
.-+..+|+.....+.|++++-
T Consensus 189 v~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 189 VFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred HHHHHHHhcccchHHHHHhCc
Confidence 335577888888888987653
No 297
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=22.42 E-value=3e+02 Score=19.69 Aligned_cols=62 Identities=13% Similarity=-0.103 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD 98 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD 98 (116)
+.+..++.+...+==..-...+++|.|.....+....+.........+............++
T Consensus 112 ~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (208)
T COG1280 112 KAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAA 173 (208)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666554444445567888887665554444444444444444443333333433
No 298
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.68 E-value=2.5e+02 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=28.4
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNA 79 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~ 79 (116)
+-.++..+.++.+.......+...-+-.+.+.....+.+..++....
T Consensus 258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~ 304 (488)
T KOG2325|consen 258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYN 304 (488)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhh
Confidence 44566777777777777777666555555555555555555544443
No 299
>PRK02237 hypothetical protein; Provisional
Probab=21.00 E-value=2.6e+02 Score=18.50 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637 73 ATAAQNANKWSGTSQLLPLLGAFVGDSF 100 (116)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~G~LaDr~ 100 (116)
+.+.-+...+.++.++.+++.+|..|+.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~ 83 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGV 83 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCc
Confidence 4477788899999999999999999985
No 300
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.19 E-value=3.1e+02 Score=20.64 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHH
Q 048637 55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTI 107 (116)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i 107 (116)
++...+|.++....+.-. ....++..++...+||+.-+ +|.-|.+
T Consensus 178 g~vPLl~~~fi~~~~~~~-------v~~vv~~~~aL~~fG~~ga~-lg~ak~v 222 (247)
T KOG4473|consen 178 GIVPLLPAAFVKDYKVRI-------VVSVVATTFALFMFGYVGAH-LGKAKVV 222 (247)
T ss_pred cHHhhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHHHHHHH-hcCChhH
Confidence 455567776665544332 23334445556678888888 4754443
Done!