Query 048637
Match_columns 116
No_of_seqs 119 out of 1056
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.1 7.2E-10 2.5E-14 85.5 10.5 83 31-114 7-95 (491)
2 2cfq_A Lactose permease; trans 98.9 4.3E-09 1.5E-13 80.5 6.8 75 38-113 8-82 (417)
3 2xut_A Proton/peptide symporte 98.9 5.8E-09 2E-13 81.1 7.6 80 33-113 8-94 (524)
4 3o7q_A L-fucose-proton symport 98.7 9.8E-08 3.4E-12 72.1 10.5 80 33-114 22-101 (438)
5 3o7q_A L-fucose-proton symport 98.6 4.1E-07 1.4E-11 68.6 9.6 76 38-114 259-335 (438)
6 1pw4_A Glycerol-3-phosphate tr 98.5 3.5E-07 1.2E-11 69.1 7.6 76 36-114 27-102 (451)
7 1pw4_A Glycerol-3-phosphate tr 98.4 2.7E-06 9.2E-11 64.2 11.0 76 37-113 252-329 (451)
8 2gfp_A EMRD, multidrug resista 98.2 2.7E-06 9.1E-11 63.2 7.1 70 43-114 6-75 (375)
9 4gc0_A D-xylose-proton symport 97.9 1.9E-05 6.6E-10 60.4 6.9 39 75-114 57-95 (491)
10 2cfq_A Lactose permease; trans 97.8 8.8E-05 3E-09 56.4 9.0 65 48-113 231-298 (417)
11 4gc0_A D-xylose-proton symport 97.8 1.7E-05 5.9E-10 60.7 4.7 73 39-113 278-351 (491)
12 2gfp_A EMRD, multidrug resista 97.5 9.8E-05 3.4E-09 54.6 4.7 67 37-104 199-265 (375)
13 4aps_A DI-OR tripeptide H+ sym 97.5 5.3E-05 1.8E-09 58.1 3.0 69 39-108 285-353 (491)
14 2xut_A Proton/peptide symporte 51.7 73 0.0025 23.8 8.4 34 78-112 153-186 (524)
15 2yvc_D Neprilysin; protein-pep 34.7 9.7 0.00033 17.7 0.2 7 1-7 7-13 (26)
16 2g9p_A Antimicrobial peptide l 22.8 31 0.0011 15.8 0.8 14 92-106 2-15 (26)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.09 E-value=7.2e-10 Score=85.47 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=73.7
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc-ccchH
Q 048637 31 ANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGP-----LGQSTATAAQNANKWSGTSQLLPLLGAFVGDS-FLGRY 104 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~iGRr 104 (116)
..+++++.++......+++...+|++..+++.|+++. +|++..+...+.....+...++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3466778889999999999999999999999999988 99999999999999999999999999999999 6 999
Q ss_pred HHHHHHHHHH
Q 048637 105 QTIFLLLLFM 114 (116)
Q Consensus 105 ~~i~~~~il~ 114 (116)
+++..+.++.
T Consensus 86 ~~~~~~~~~~ 95 (491)
T 4aps_A 86 PAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.86 E-value=4.3e-09 Score=80.54 Aligned_cols=75 Identities=13% Similarity=-0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+.+......+.....+.....++|.|+++++|+++.+...+.....+...++.+++|+++|| +||||++.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITG 82 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHH
Confidence 34444444455555666667899999998899999999999999999999999999999999 5999999987764
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.86 E-value=5.8e-09 Score=81.08 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=68.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-chHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG------QSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-GRYQ 105 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-GRr~ 105 (116)
+++++.++...+..++....+|+...+++.|+++++| ++..+...+...+.+...++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 3455667777788888999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHH
Q 048637 106 TIFLLLLF 113 (116)
Q Consensus 106 ~i~~~~il 113 (116)
++.++.++
T Consensus 87 ~~~~~~~~ 94 (524)
T 2xut_A 87 TILWLSLI 94 (524)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.73 E-value=9.8e-08 Score=72.06 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
+++++.++......+......+.....+|. +.+++|++..+...+...+.+...++.+++|+++|| +|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 455666666666666666666666666666 556799999999999999999999999999999999 599999998886
Q ss_pred HH
Q 048637 113 FM 114 (116)
Q Consensus 113 l~ 114 (116)
+.
T Consensus 100 ~~ 101 (438)
T 3o7q_A 100 LY 101 (438)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.56 E-value=4.1e-07 Score=68.59 Aligned_cols=76 Identities=13% Similarity=0.008 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 38 SALFIIGVEMAERFAFCGTGSNLITY-LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
.++......++....++....++|.| +++.+|++..++........+...++.+++|+++|| +|||+++..+.++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 34555555566667778888999999 888889999999999999999999999999999999 59999998877643
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.49 E-value=3.5e-07 Score=69.14 Aligned_cols=76 Identities=12% Similarity=-0.098 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
++.++......+......+....++|.+.++ + .+..+...+.....+...++.+++|+++|| +|||+++.++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence 3444455555555555655566667766654 6 999999999999999999999999999999 59999999887654
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.42 E-value=2.7e-06 Score=64.22 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc--chHHHHHHHHHH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL--GRYQTIFLLLLF 113 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i--GRr~~i~~~~il 113 (116)
+.++......++....+++...++|.|+++.+|++..++........+...++.+++|+++|| + |||+.+..+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 456666667777788888899999999999899999999999999999999999999999999 8 999988776644
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.24 E-value=2.7e-06 Score=63.21 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 43 IGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 43 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
....+............+|.+. +++|.++.+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 75 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 3444455555555556666654 5699999999999999999999999999999999 59999998877643
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.95 E-value=1.9e-05 Score=60.42 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637 75 AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114 (116)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~ 114 (116)
...+...+.+...++.+++|+++|| +|||+++.++.++.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 3455566777888899999999999 59999999887653
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.84 E-value=8.8e-05 Score=56.43 Aligned_cols=65 Identities=6% Similarity=0.052 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCC---hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 48 AERFAFCGTGSNLITYLTGPLGQS---TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 48 ~~~~~~y~~~~~l~~yl~~~lg~~---~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
+....++....++|.|+...++.. .........+..+...++.+++|+++|| +|||+++..+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH
Confidence 333445555566888887655432 2333444445556667788999999999 5999998877654
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.82 E-value=1.7e-05 Score=60.70 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=51.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637 39 ALFIIGVE-MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113 (116)
Q Consensus 39 ~~~~~~~~-~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il 113 (116)
........ +.....++.+..|.+ ++.+..+.+............+...++.++++++.|| +|||+.++.+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALG 351 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHH
Confidence 33433333 333334444444444 4445678888888888888888899999999999999 5999998877654
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.51 E-value=9.8e-05 Score=54.65 Aligned_cols=67 Identities=6% Similarity=-0.128 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637 37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY 104 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr 104 (116)
+.++......++....++....++|.|+++.+|+++.++........+...++.++.|+++|| +|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~ 265 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL 265 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345555666667777888888999999998899999999999999999999999999999999 4873
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.48 E-value=5.3e-05 Score=58.09 Aligned_cols=69 Identities=9% Similarity=-0.162 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637 39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF 108 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~ 108 (116)
.+............++....+++.|..+..+.+...+........+...++.++.|+++|| +|||+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~ 353 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSS 353 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---C
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCc
Confidence 3334444455555666677788999988888886666667777778888889999999999 59986543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=51.70 E-value=73 Score=23.82 Aligned_cols=34 Identities=9% Similarity=-0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637 78 NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112 (116)
Q Consensus 78 ~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i 112 (116)
......+...++++++|++.|. .|-+..+.+..+
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~ 186 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGV 186 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 4455667777889999999999 598877665543
No 15
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=34.66 E-value=9.7 Score=17.68 Aligned_cols=7 Identities=57% Similarity=0.928 Sum_probs=4.8
Q ss_pred CCcchhh
Q 048637 1 MDISDTE 7 (116)
Q Consensus 1 ~~~~~~~ 7 (116)
|||||-.
T Consensus 7 mditdin 13 (26)
T 2yvc_D 7 MDITDIN 13 (26)
T ss_pred ccccccc
Confidence 7887753
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=22.84 E-value=31 Score=15.81 Aligned_cols=14 Identities=21% Similarity=0.104 Sum_probs=10.3
Q ss_pred HHHHhhhcccchHHH
Q 048637 92 LGAFVGDSFLGRYQT 106 (116)
Q Consensus 92 ~~G~LaDr~iGRr~~ 106 (116)
++|.|..+ |||+..
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 46778889 598764
Done!