Query 048638
Match_columns 147
No_of_seqs 165 out of 1490
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 11:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00330 acetyltransferase; Pr 99.9 1.3E-20 2.8E-25 117.3 14.3 123 8-130 7-140 (147)
2 PRK10146 aminoalkylphosphonic 99.9 9E-21 2E-25 117.6 11.5 122 8-130 4-137 (144)
3 KOG3139 N-acetyltransferase [G 99.8 6.9E-20 1.5E-24 111.6 11.9 117 17-134 26-149 (165)
4 PRK03624 putative acetyltransf 99.8 1.7E-19 3.7E-24 111.0 13.0 121 8-130 3-129 (140)
5 TIGR02406 ectoine_EctA L-2,4-d 99.8 3E-19 6.5E-24 112.4 11.9 121 10-130 1-127 (157)
6 PF13527 Acetyltransf_9: Acety 99.8 4.1E-19 9E-24 107.9 11.2 114 10-128 2-126 (127)
7 KOG3216 Diamine acetyltransfer 99.8 1.3E-18 2.9E-23 104.9 12.6 125 6-130 2-145 (163)
8 PF13673 Acetyltransf_10: Acet 99.8 7.1E-19 1.5E-23 105.4 11.4 104 17-126 1-117 (117)
9 PHA00673 acetyltransferase dom 99.8 1.7E-18 3.7E-23 106.8 13.0 118 12-130 11-145 (154)
10 PRK10140 putative acetyltransf 99.8 1.9E-18 4.2E-23 109.0 13.5 122 8-131 4-141 (162)
11 TIGR03827 GNAT_ablB putative b 99.8 1.1E-18 2.4E-23 118.4 13.1 122 8-131 116-245 (266)
12 TIGR02382 wecD_rffC TDP-D-fuco 99.8 1.6E-18 3.5E-23 112.4 13.2 123 8-130 44-184 (191)
13 PRK07922 N-acetylglutamate syn 99.8 1.4E-18 3E-23 110.5 12.6 121 7-130 5-126 (169)
14 PLN02706 glucosamine 6-phospha 99.8 5.5E-18 1.2E-22 105.8 14.2 123 8-130 7-143 (150)
15 TIGR03103 trio_acet_GNAT GNAT- 99.8 3.4E-18 7.4E-23 125.7 14.2 123 8-130 83-216 (547)
16 PRK07757 acetyltransferase; Pr 99.8 3.3E-18 7.2E-23 107.0 11.8 117 8-131 2-122 (152)
17 COG1246 ArgA N-acetylglutamate 99.8 1.9E-18 4.1E-23 105.3 10.1 117 9-131 2-123 (153)
18 PRK10975 TDP-fucosamine acetyl 99.8 4.7E-18 1E-22 110.4 12.5 123 8-130 47-187 (194)
19 PRK09491 rimI ribosomal-protei 99.8 5.8E-18 1.3E-22 105.3 12.1 120 8-130 2-124 (146)
20 PF13508 Acetyltransf_7: Acety 99.8 3.9E-18 8.5E-23 95.5 9.3 77 47-128 3-79 (79)
21 TIGR01575 rimI ribosomal-prote 99.8 1.3E-17 2.8E-22 101.5 12.4 113 17-131 1-116 (131)
22 PRK10314 putative acyltransfer 99.8 2.1E-18 4.5E-23 108.0 8.5 120 11-131 10-134 (153)
23 PF00583 Acetyltransf_1: Acety 99.8 5.2E-18 1.1E-22 95.6 7.6 73 55-127 3-83 (83)
24 TIGR01890 N-Ac-Glu-synth amino 99.8 1E-17 2.2E-22 120.4 10.9 121 5-131 280-405 (429)
25 PLN02825 amino-acid N-acetyltr 99.8 5.3E-18 1.1E-22 122.9 9.4 121 4-130 364-489 (515)
26 PRK05279 N-acetylglutamate syn 99.8 8.6E-18 1.9E-22 121.3 9.8 122 4-131 291-417 (441)
27 PF13420 Acetyltransf_4: Acety 99.7 2.8E-17 6.1E-22 103.1 10.9 121 10-131 1-139 (155)
28 PRK09831 putative acyltransfer 99.7 2.4E-17 5.2E-22 102.7 10.1 110 9-131 2-126 (147)
29 PRK12308 bifunctional arginino 99.7 3.2E-17 7E-22 122.3 11.4 119 9-131 465-584 (614)
30 PF13523 Acetyltransf_8: Acety 99.7 2.9E-17 6.2E-22 102.8 9.2 120 10-130 1-140 (152)
31 COG0456 RimI Acetyltransferase 99.7 1E-16 2.2E-21 102.5 11.1 126 5-130 9-153 (177)
32 COG1247 Sortase and related ac 99.7 4.7E-16 1E-20 97.4 13.6 123 8-130 2-142 (169)
33 PRK10514 putative acetyltransf 99.7 1.7E-16 3.8E-21 98.5 11.1 116 8-130 2-125 (145)
34 KOG3396 Glucosamine-phosphate 99.7 5.8E-16 1.3E-20 91.8 11.2 125 6-130 5-143 (150)
35 COG3153 Predicted acetyltransf 99.7 1.4E-15 3E-20 95.4 13.0 120 7-131 3-131 (171)
36 TIGR01686 FkbH FkbH-like domai 99.7 1.2E-15 2.7E-20 106.0 13.6 118 8-128 187-318 (320)
37 PRK15130 spermidine N1-acetylt 99.7 6.2E-16 1.3E-20 99.9 10.8 123 6-130 5-144 (186)
38 PRK10809 ribosomal-protein-S5- 99.7 2.9E-15 6.3E-20 97.3 13.2 122 8-130 18-165 (194)
39 PRK01346 hypothetical protein; 99.7 3.1E-15 6.7E-20 107.4 13.6 120 7-130 6-135 (411)
40 PHA01807 hypothetical protein 99.7 2.2E-15 4.7E-20 93.9 10.6 112 12-124 8-136 (153)
41 PRK10151 ribosomal-protein-L7/ 99.6 9.8E-15 2.1E-19 93.7 12.9 122 8-131 11-155 (179)
42 PRK10562 putative acetyltransf 99.6 6.1E-15 1.3E-19 91.6 11.2 113 10-130 2-124 (145)
43 TIGR03448 mycothiol_MshD mycot 99.6 2.8E-15 6E-20 103.1 10.6 116 11-130 4-127 (292)
44 cd02169 Citrate_lyase_ligase C 99.6 3.6E-15 7.8E-20 102.0 10.6 76 50-130 8-83 (297)
45 TIGR03448 mycothiol_MshD mycot 99.6 2.3E-14 5E-19 98.6 14.0 122 9-130 151-287 (292)
46 TIGR03585 PseH pseudaminic aci 99.6 4E-15 8.7E-20 93.3 9.2 119 9-130 2-137 (156)
47 KOG3235 Subunit of the major N 99.6 3.3E-15 7.1E-20 90.9 8.2 121 9-130 3-134 (193)
48 KOG2488 Acetyltransferase (GNA 99.6 1.8E-14 4E-19 90.2 10.4 96 39-134 84-185 (202)
49 PF13302 Acetyltransf_3: Acety 99.6 3.1E-14 6.7E-19 87.9 11.4 119 8-127 2-142 (142)
50 COG3393 Predicted acetyltransf 99.6 2.7E-14 5.8E-19 94.1 9.2 92 38-130 168-261 (268)
51 PRK13688 hypothetical protein; 99.6 2E-14 4.2E-19 90.0 7.2 78 47-130 45-132 (156)
52 TIGR00124 cit_ly_ligase [citra 99.5 1.5E-13 3.2E-18 95.5 10.2 80 47-132 31-110 (332)
53 PF08445 FR47: FR47-like prote 99.5 2.4E-13 5.3E-18 76.9 8.8 69 57-129 10-80 (86)
54 COG2153 ElaA Predicted acyltra 99.5 1.3E-13 2.8E-18 82.9 7.8 84 47-130 49-135 (155)
55 PF13718 GNAT_acetyltr_2: GNAT 99.5 7.1E-13 1.5E-17 85.0 11.1 106 21-128 2-173 (196)
56 KOG3138 Predicted N-acetyltran 99.5 1.6E-13 3.6E-18 87.1 7.7 122 7-130 16-151 (187)
57 KOG3397 Acetyltransferases [Ge 99.5 6.5E-13 1.4E-17 82.2 8.7 109 18-128 25-138 (225)
58 KOG3234 Acetyltransferase, (GN 99.4 3.3E-13 7.2E-18 82.1 6.1 121 8-128 2-128 (173)
59 TIGR01211 ELP3 histone acetylt 99.3 1.5E-11 3.2E-16 90.0 9.7 84 48-131 412-516 (522)
60 COG3981 Predicted acetyltransf 99.3 7E-11 1.5E-15 73.4 9.6 79 49-128 70-156 (174)
61 PF12568 DUF3749: Acetyltransf 99.3 4.6E-11 9.9E-16 70.9 7.8 109 13-131 10-125 (128)
62 COG1444 Predicted P-loop ATPas 99.3 7.2E-11 1.6E-15 88.7 10.4 109 19-129 443-589 (758)
63 PF12746 GNAT_acetyltran: GNAT 99.2 5.8E-11 1.2E-15 79.9 7.6 88 39-130 159-246 (265)
64 cd04301 NAT_SF N-Acyltransfera 99.2 1.6E-10 3.5E-15 61.0 8.1 57 55-111 6-64 (65)
65 COG1670 RimL Acetyltransferase 99.2 2.8E-10 6E-15 73.0 9.6 74 57-131 77-158 (187)
66 KOG4144 Arylalkylamine N-acety 99.2 2.6E-11 5.7E-16 73.7 3.7 124 7-131 11-161 (190)
67 PF14542 Acetyltransf_CG: GCN5 99.1 2.4E-09 5.2E-14 59.4 8.9 55 55-110 6-60 (78)
68 PF08444 Gly_acyl_tr_C: Aralky 99.1 5.1E-10 1.1E-14 62.6 5.7 77 53-133 4-82 (89)
69 COG2388 Predicted acetyltransf 99.0 4.9E-09 1.1E-13 60.2 6.9 66 45-111 13-78 (99)
70 COG4552 Eis Predicted acetyltr 98.8 1.4E-08 3E-13 69.9 6.9 79 49-130 41-126 (389)
71 COG3818 Predicted acetyltransf 98.8 3E-08 6.6E-13 59.0 7.3 120 10-134 10-151 (167)
72 COG3053 CitC Citrate lyase syn 98.7 1.9E-07 4.1E-12 63.0 9.5 89 49-142 38-126 (352)
73 PF06852 DUF1248: Protein of u 98.7 1.7E-06 3.6E-11 55.2 12.3 123 5-128 2-134 (181)
74 PRK13834 putative autoinducer 98.6 2.4E-06 5.2E-11 56.1 12.1 104 29-132 34-166 (207)
75 PF00765 Autoind_synth: Autoin 98.5 1.4E-06 2.9E-11 56.1 9.0 92 41-133 39-157 (182)
76 TIGR03694 exosort_acyl putativ 98.5 2.4E-06 5.2E-11 57.4 10.5 124 8-132 9-199 (241)
77 COG5628 Predicted acetyltransf 98.5 1.9E-06 4.2E-11 50.6 8.1 87 38-127 28-119 (143)
78 KOG4135 Predicted phosphogluco 98.5 7.2E-06 1.6E-10 50.1 10.3 124 7-130 13-169 (185)
79 COG3375 Uncharacterized conser 98.5 7E-06 1.5E-10 53.5 10.5 107 5-112 1-114 (266)
80 PF04958 AstA: Arginine N-succ 98.4 2.1E-05 4.5E-10 55.0 11.7 121 7-127 1-184 (342)
81 COG3916 LasI N-acyl-L-homoseri 98.3 1.6E-05 3.5E-10 51.4 10.0 116 15-130 14-162 (209)
82 COG0454 WecD Histone acetyltra 98.3 1E-06 2.2E-11 51.7 3.6 44 78-126 87-130 (156)
83 PF13480 Acetyltransf_6: Acety 98.2 9.6E-05 2.1E-09 45.2 11.7 104 7-112 20-134 (142)
84 PRK10456 arginine succinyltran 98.2 2.1E-05 4.5E-10 54.9 9.1 121 8-128 2-183 (344)
85 PF01233 NMT: Myristoyl-CoA:pr 98.2 0.00016 3.4E-09 45.1 11.4 97 14-110 33-148 (162)
86 TIGR03245 arg_AOST_alph argini 98.1 5.8E-05 1.3E-09 52.6 8.8 120 9-128 1-182 (336)
87 TIGR03243 arg_catab_AOST argin 98.0 7.4E-05 1.6E-09 52.1 8.8 120 9-128 1-181 (335)
88 TIGR03244 arg_catab_AstA argin 98.0 5.5E-05 1.2E-09 52.8 7.7 120 9-128 1-181 (336)
89 PF05301 Mec-17: Touch recepto 97.7 0.00024 5.2E-09 42.0 6.1 55 47-101 4-75 (120)
90 PF13880 Acetyltransf_13: ESCO 97.6 7.9E-05 1.7E-09 40.0 3.0 31 72-102 5-35 (70)
91 COG1243 ELP3 Histone acetyltra 97.6 8.5E-05 1.8E-09 53.5 3.9 50 81-130 459-508 (515)
92 PF01853 MOZ_SAS: MOZ/SAS fami 97.6 0.00082 1.8E-08 43.2 7.6 48 58-105 66-113 (188)
93 TIGR03019 pepcterm_femAB FemAB 97.5 0.0078 1.7E-07 42.5 12.7 115 15-130 157-280 (330)
94 COG3882 FkbH Predicted enzyme 97.5 0.00083 1.8E-08 49.0 7.5 121 9-130 415-549 (574)
95 cd04264 DUF619-NAGS DUF619 dom 97.2 0.0028 6.1E-08 36.7 6.3 46 55-100 15-62 (99)
96 PRK01305 arginyl-tRNA-protein 97.2 0.031 6.8E-07 37.7 12.1 82 30-112 125-207 (240)
97 KOG2535 RNA polymerase II elon 97.1 0.00085 1.9E-08 47.0 3.9 49 83-131 498-547 (554)
98 PF02799 NMT_C: Myristoyl-CoA: 97.1 0.036 7.8E-07 35.9 12.4 119 10-134 31-167 (190)
99 PLN03238 probable histone acet 97.0 0.0029 6.3E-08 43.2 5.9 48 58-105 141-188 (290)
100 KOG2779 N-myristoyl transferas 97.0 0.045 9.7E-07 38.7 11.6 127 10-141 263-407 (421)
101 PRK14852 hypothetical protein; 96.9 0.017 3.8E-07 46.2 9.8 121 10-131 32-181 (989)
102 PTZ00064 histone acetyltransfe 96.8 0.0029 6.2E-08 46.4 5.1 48 58-105 370-417 (552)
103 PLN03239 histone acetyltransfe 96.8 0.0039 8.5E-08 43.8 5.4 48 58-105 199-246 (351)
104 cd04265 DUF619-NAGS-U DUF619 d 96.8 0.0084 1.8E-07 34.7 5.8 46 56-101 17-63 (99)
105 KOG2779 N-myristoyl transferas 96.8 0.022 4.8E-07 40.2 8.7 74 34-107 118-202 (421)
106 PF04377 ATE_C: Arginine-tRNA- 96.8 0.051 1.1E-06 33.0 11.2 94 34-128 24-119 (128)
107 COG2401 ABC-type ATPase fused 96.7 0.0019 4.1E-08 46.8 3.5 57 72-128 241-305 (593)
108 KOG4601 Uncharacterized conser 96.6 0.021 4.6E-07 37.8 7.2 63 38-100 58-136 (264)
109 PLN00104 MYST -like histone ac 96.5 0.0036 7.8E-08 45.5 3.6 48 58-105 292-339 (450)
110 COG3138 AstA Arginine/ornithin 96.5 0.01 2.3E-07 40.5 5.5 88 8-95 2-142 (336)
111 PF13444 Acetyltransf_5: Acety 96.5 0.014 3.1E-07 33.8 5.5 48 47-94 30-100 (101)
112 KOG2696 Histone acetyltransfer 96.2 0.014 2.9E-07 41.3 4.9 59 59-119 200-263 (403)
113 KOG2747 Histone acetyltransfer 96.1 0.012 2.5E-07 42.2 4.2 59 46-104 233-292 (396)
114 PHA00432 internal virion prote 96.0 0.037 8.1E-07 33.8 5.8 79 48-131 38-121 (137)
115 PF04768 DUF619: Protein of un 95.8 0.26 5.7E-06 31.5 9.7 121 9-139 24-153 (170)
116 PF02474 NodA: Nodulation prot 95.6 0.045 9.7E-07 34.8 4.9 112 12-125 14-137 (196)
117 PHA01733 hypothetical protein 95.4 0.041 8.9E-07 34.2 4.4 117 9-130 4-131 (153)
118 KOG2036 Predicted P-loop ATPas 94.6 0.042 9.1E-07 42.4 3.4 32 72-103 614-645 (1011)
119 COG5092 NMT1 N-myristoyl trans 94.6 0.58 1.3E-05 32.9 8.4 102 7-108 81-201 (451)
120 KOG3698 Hyaluronoglucosaminida 93.8 0.55 1.2E-05 35.8 7.5 123 6-128 678-875 (891)
121 COG5027 SAS2 Histone acetyltra 93.3 0.044 9.5E-07 38.6 1.3 45 58-102 248-292 (395)
122 PF04339 DUF482: Protein of un 93.2 2.4 5.1E-05 30.8 10.9 115 13-133 210-331 (370)
123 PF11124 Pho86: Inorganic phos 93.0 1.4 3.1E-05 30.8 8.1 85 44-130 167-270 (304)
124 PRK02983 lysS lysyl-tRNA synth 92.7 1.2 2.6E-05 37.0 8.6 63 49-112 422-484 (1094)
125 PF09390 DUF1999: Protein of u 92.5 1.6 3.5E-05 27.0 10.0 119 9-130 2-140 (161)
126 PF09924 DUF2156: Uncharacteri 92.5 1 2.2E-05 31.4 7.2 98 14-112 142-245 (299)
127 PF12261 T_hemolysin: Thermost 92.3 1.2 2.6E-05 28.8 6.7 53 72-128 87-139 (179)
128 COG2898 Uncharacterized conser 91.7 2.2 4.7E-05 32.5 8.4 63 49-112 394-457 (538)
129 COG5630 ARG2 Acetylglutamate s 91.2 1.4 3.1E-05 31.8 6.5 84 15-102 344-431 (495)
130 cd04266 DUF619-NAGS-FABP DUF61 91.0 1.5 3.3E-05 25.8 5.7 44 56-99 17-67 (108)
131 PRK00756 acyltransferase NodA; 90.6 1.7 3.8E-05 27.6 5.9 110 12-123 14-135 (196)
132 TIGR03827 GNAT_ablB putative b 89.5 0.53 1.1E-05 32.3 3.4 42 88-129 21-62 (266)
133 PF11090 DUF2833: Protein of u 89.1 1.5 3.3E-05 24.6 4.3 72 54-130 6-83 (86)
134 KOG3014 Protein involved in es 87.6 6.8 0.00015 26.7 7.4 32 72-103 183-214 (257)
135 cd03173 DUF619-like DUF619 dom 86.0 4.9 0.00011 23.3 6.4 45 56-100 17-61 (98)
136 PF12953 DUF3842: Domain of un 84.0 1.7 3.7E-05 26.4 3.0 55 83-138 6-60 (131)
137 PHA02769 hypothetical protein; 84.0 1.4 3.1E-05 26.1 2.6 45 90-134 94-142 (154)
138 PRK04531 acetylglutamate kinas 80.5 21 0.00045 26.4 10.2 114 13-140 259-376 (398)
139 PF02388 FemAB: FemAB family; 79.9 9.1 0.0002 28.2 6.1 80 49-129 36-138 (406)
140 PF11633 SUD-M: Single-strande 79.4 3.2 7E-05 25.4 3.1 56 88-143 19-79 (142)
141 PRK15312 antimicrobial resista 79.0 20 0.00043 25.3 7.2 75 34-109 188-271 (298)
142 COG5092 NMT1 N-myristoyl trans 77.9 23 0.00049 25.3 8.7 122 10-134 261-416 (451)
143 PF07395 Mig-14: Mig-14; Inte 77.5 21 0.00045 24.8 8.1 100 10-110 132-242 (264)
144 PF13530 SCP2_2: Sterol carrie 76.7 6.9 0.00015 26.0 4.4 53 32-84 7-66 (218)
145 PF00571 CBS: CBS domain CBS d 76.5 7.3 0.00016 19.3 3.7 32 34-65 17-48 (57)
146 KOG1472 Histone acetyltransfer 74.5 2 4.4E-05 33.7 1.6 94 35-128 407-502 (720)
147 PF04339 DUF482: Protein of un 70.9 32 0.0007 25.2 6.8 52 77-128 105-157 (370)
148 PF02388 FemAB: FemAB family; 66.8 50 0.0011 24.5 7.6 69 58-127 303-379 (406)
149 COG2384 Predicted SAM-dependen 66.2 12 0.00026 25.2 3.6 46 88-133 93-143 (226)
150 COG2935 Putative arginyl-tRNA: 65.1 42 0.00092 23.1 11.9 56 56-112 159-214 (253)
151 TIGR02990 ectoine_eutA ectoine 63.4 9.6 0.00021 25.9 2.9 39 92-130 106-150 (239)
152 cd07235 MRD Mitomycin C resist 62.1 5.6 0.00012 23.2 1.5 17 113-129 10-26 (122)
153 COG3473 Maleate cis-trans isom 59.1 12 0.00025 25.1 2.6 31 100-130 112-148 (238)
154 cd07043 STAS_anti-anti-sigma_f 58.9 20 0.00043 19.9 3.4 38 90-127 55-92 (99)
155 cd08356 Glo_EDI_BRP_like_17 Th 58.6 7 0.00015 22.7 1.5 17 115-131 13-29 (113)
156 PF11039 DUF2824: Protein of u 58.0 42 0.00092 20.7 8.5 78 47-128 38-119 (151)
157 PF01740 STAS: STAS domain; I 56.9 16 0.00034 21.3 2.8 39 90-128 65-103 (117)
158 PF09924 DUF2156: Uncharacteri 56.8 44 0.00094 23.4 5.4 71 55-133 30-100 (299)
159 PF03376 Adeno_E3B: Adenovirus 54.6 5.8 0.00013 20.9 0.5 14 80-93 52-65 (67)
160 cd07042 STAS_SulP_like_sulfate 54.2 30 0.00065 19.5 3.7 39 90-128 58-96 (107)
161 PRK02983 lysS lysyl-tRNA synth 54.1 1.3E+02 0.0028 25.8 8.1 42 91-132 298-339 (1094)
162 cd06844 STAS Sulphate Transpor 53.2 31 0.00067 19.5 3.6 39 90-128 56-94 (100)
163 TIGR02886 spore_II_AA anti-sig 53.0 32 0.0007 19.6 3.7 38 91-128 57-94 (106)
164 PF06559 DCD: 2'-deoxycytidine 52.9 8.5 0.00018 27.6 1.3 40 48-89 317-356 (364)
165 TIGR00377 ant_ant_sig anti-ant 52.0 25 0.00055 20.0 3.1 39 90-128 60-98 (108)
166 PF05274 Baculo_E25: Occlusion 51.6 31 0.00067 22.2 3.5 37 101-137 139-175 (182)
167 COG2348 Peptidoglycan interpep 50.6 1.1E+02 0.0023 23.1 7.6 46 83-128 78-141 (418)
168 cd09012 Glo_EDI_BRP_like_24 Th 48.5 9.3 0.0002 22.4 0.9 16 114-129 11-26 (124)
169 PF08901 DUF1847: Protein of u 48.4 24 0.00052 22.4 2.6 35 94-128 43-84 (157)
170 PF04816 DUF633: Family of unk 47.9 17 0.00037 24.1 2.1 43 88-130 74-121 (205)
171 COG3607 Predicted lactoylgluta 47.7 7.4 0.00016 23.6 0.4 15 115-129 15-29 (133)
172 TIGR03032 conserved hypothetic 46.1 1.1E+02 0.0024 22.1 5.8 39 46-87 281-319 (335)
173 smart00116 CBS Domain in cysta 45.6 30 0.00066 15.4 3.4 29 37-65 13-41 (49)
174 cd04263 DUF619-NAGK-FABP DUF61 43.2 67 0.0014 18.7 6.4 35 66-100 27-61 (98)
175 cd08350 BLMT_like BLMT, a bleo 42.0 14 0.0003 21.5 1.0 17 114-130 13-29 (120)
176 COG5270 PUA domain (predicted 40.7 47 0.001 21.8 3.1 32 50-89 165-196 (202)
177 cd04641 CBS_pair_28 The CBS do 40.6 72 0.0016 18.3 4.7 31 36-66 85-115 (120)
178 PF13466 STAS_2: STAS domain 40.2 60 0.0013 17.3 3.5 38 89-126 42-79 (80)
179 cd04610 CBS_pair_ParBc_assoc T 40.0 67 0.0015 17.7 4.3 30 36-65 72-101 (107)
180 cd07041 STAS_RsbR_RsbS_like Su 38.3 73 0.0016 18.2 3.6 39 90-128 58-96 (109)
181 PF14639 YqgF: Holliday-juncti 38.2 1E+02 0.0022 19.4 6.6 18 48-65 21-38 (150)
182 cd04583 CBS_pair_ABC_OpuCA_ass 38.0 73 0.0016 17.6 4.6 32 35-66 13-44 (109)
183 PF04015 DUF362: Domain of unk 37.7 81 0.0018 20.6 4.1 44 86-129 17-65 (206)
184 cd04619 CBS_pair_6 The CBS dom 37.4 80 0.0017 17.9 4.7 33 34-66 11-43 (114)
185 PF02268 TFIIA_gamma_N: Transc 37.0 50 0.0011 16.5 2.3 23 83-105 5-27 (49)
186 cd08344 MhqB_like_N N-terminal 36.3 39 0.00085 19.3 2.3 25 107-131 4-30 (112)
187 PF02334 RTP: Replication term 36.0 13 0.00027 22.1 0.1 23 84-106 28-50 (122)
188 PF03465 eRF1_3: eRF1 domain 3 35.6 65 0.0014 19.0 3.1 34 93-126 70-104 (113)
189 cd04624 CBS_pair_11 The CBS do 35.0 85 0.0018 17.5 4.5 31 36-66 13-43 (112)
190 cd04632 CBS_pair_19 The CBS do 34.9 94 0.002 18.0 4.6 33 34-66 11-43 (128)
191 cd04597 CBS_pair_DRTGG_assoc2 34.5 94 0.002 17.9 4.4 33 34-66 76-108 (113)
192 cd04605 CBS_pair_MET2_assoc Th 34.4 87 0.0019 17.4 4.6 32 35-66 13-44 (110)
193 cd04590 CBS_pair_CorC_HlyC_ass 34.3 88 0.0019 17.4 4.6 30 36-65 76-105 (111)
194 cd04611 CBS_pair_PAS_GGDEF_DUF 34.3 87 0.0019 17.4 4.7 31 36-66 76-106 (111)
195 cd07267 THT_Oxygenase_N N-term 34.1 25 0.00054 20.2 1.2 16 115-130 15-30 (113)
196 cd04582 CBS_pair_ABC_OpuCA_ass 33.6 88 0.0019 17.2 4.6 31 36-66 13-43 (106)
197 cd04593 CBS_pair_EriC_assoc_ba 33.4 94 0.002 17.5 4.8 33 34-66 11-43 (115)
198 COG5653 Protein involved in ce 33.3 2.1E+02 0.0045 21.5 9.3 57 55-112 279-335 (406)
199 cd07252 BphC1-RGP6_N_like N-te 32.9 72 0.0016 18.5 3.1 17 115-131 14-31 (120)
200 TIGR00646 MG010 DNA primase-re 32.5 73 0.0016 21.5 3.2 54 11-64 20-76 (218)
201 cd04600 CBS_pair_HPP_assoc Thi 32.5 1E+02 0.0022 17.6 4.3 30 36-65 89-118 (124)
202 cd04587 CBS_pair_CAP-ED_DUF294 32.3 96 0.0021 17.3 3.8 31 36-66 78-108 (113)
203 cd04596 CBS_pair_DRTGG_assoc T 32.0 97 0.0021 17.2 4.4 32 34-65 71-102 (108)
204 PRK03681 hypA hydrogenase nick 31.8 72 0.0016 19.0 2.8 24 87-110 4-27 (114)
205 COG2994 HlyC ACP:hemolysin acy 31.7 78 0.0017 19.8 2.9 17 49-65 54-70 (148)
206 cd04629 CBS_pair_16 The CBS do 31.4 98 0.0021 17.3 3.5 32 35-66 12-43 (114)
207 cd04607 CBS_pair_NTP_transfera 31.3 1E+02 0.0022 17.3 4.7 33 34-66 12-44 (113)
208 cd04642 CBS_pair_29 The CBS do 31.2 1.1E+02 0.0024 17.7 4.3 30 36-65 91-120 (126)
209 PRK01346 hypothetical protein; 31.0 2.2E+02 0.0047 21.0 8.0 78 18-100 168-265 (411)
210 cd04603 CBS_pair_KefB_assoc Th 30.8 1.1E+02 0.0023 17.3 4.6 31 36-66 13-43 (111)
211 cd04643 CBS_pair_30 The CBS do 30.6 1.1E+02 0.0023 17.2 4.3 32 35-66 12-43 (116)
212 COG3543 Uncharacterized conser 30.6 1E+02 0.0022 18.9 3.3 28 77-104 9-36 (135)
213 PHA02087 hypothetical protein 30.3 95 0.0021 16.6 3.2 16 7-22 3-18 (83)
214 PF12162 STAT1_TAZ2bind: STAT1 30.3 15 0.00033 15.0 -0.1 14 11-24 8-21 (23)
215 cd04801 CBS_pair_M50_like This 30.1 1.1E+02 0.0024 17.2 4.5 31 36-66 79-109 (114)
216 cd04613 CBS_pair_SpoIVFB_EriC_ 29.7 1.1E+02 0.0023 17.0 4.4 33 34-66 11-43 (114)
217 cd04627 CBS_pair_14 The CBS do 29.5 1.2E+02 0.0025 17.4 4.5 29 38-66 90-118 (123)
218 PHA02456 zinc metallopeptidase 29.1 1.3E+02 0.0029 17.9 4.7 29 73-101 63-91 (141)
219 PF03588 Leu_Phe_trans: Leucyl 29.1 1.7E+02 0.0036 19.0 9.4 66 41-112 92-157 (173)
220 cd07240 ED_TypeI_classII_N N-t 29.0 67 0.0014 18.2 2.4 18 115-132 14-32 (117)
221 cd04621 CBS_pair_8 The CBS dom 28.8 1.3E+02 0.0029 17.8 4.2 32 35-66 12-43 (135)
222 COG0375 HybF Zn finger protein 28.8 1.1E+02 0.0024 18.4 3.2 34 88-121 5-47 (115)
223 cd08362 BphC5-RrK37_N_like N-t 28.6 59 0.0013 18.6 2.2 24 107-130 5-31 (120)
224 cd04604 CBS_pair_KpsF_GutQ_ass 28.6 1.1E+02 0.0025 17.0 4.6 32 34-65 77-108 (114)
225 cd04640 CBS_pair_27 The CBS do 28.6 1.3E+02 0.0027 17.5 4.6 31 36-66 13-43 (126)
226 cd04592 CBS_pair_EriC_assoc_eu 28.5 1.4E+02 0.003 17.9 4.5 18 49-66 26-43 (133)
227 COG1658 Small primase-like pro 28.5 48 0.001 20.3 1.7 22 78-99 60-81 (127)
228 cd04585 CBS_pair_ACT_assoc2 Th 28.5 1.2E+02 0.0026 17.1 4.1 30 36-65 87-116 (122)
229 cd04614 CBS_pair_1 The CBS dom 28.1 1.1E+02 0.0025 16.8 4.6 32 35-66 12-43 (96)
230 cd07238 Glo_EDI_BRP_like_5 Thi 27.8 32 0.0007 19.5 0.9 16 114-129 11-27 (112)
231 cd04635 CBS_pair_22 The CBS do 27.8 1.2E+02 0.0027 17.2 4.3 31 35-65 86-116 (122)
232 cd04606 CBS_pair_Mg_transporte 27.7 1.2E+02 0.0026 16.9 4.5 31 36-66 73-103 (109)
233 COG5428 Uncharacterized conser 27.6 1E+02 0.0023 16.6 2.7 19 48-66 31-49 (69)
234 cd04623 CBS_pair_10 The CBS do 27.6 1.2E+02 0.0026 16.8 4.6 31 36-66 13-43 (113)
235 cd04631 CBS_pair_18 The CBS do 26.5 1.3E+02 0.0029 17.1 4.5 30 36-65 90-119 (125)
236 PRK00762 hypA hydrogenase nick 26.2 1E+02 0.0022 18.6 2.9 24 87-110 4-27 (124)
237 COG2898 Uncharacterized conser 26.0 1.8E+02 0.0039 22.7 4.6 43 90-132 271-313 (538)
238 cd04639 CBS_pair_26 The CBS do 25.9 1.3E+02 0.0028 16.7 4.6 32 35-66 75-106 (111)
239 cd04588 CBS_pair_CAP-ED_DUF294 25.7 1.3E+02 0.0028 16.7 4.7 30 36-65 75-104 (110)
240 TIGR00100 hypA hydrogenase nic 25.7 1E+02 0.0023 18.3 2.8 23 87-109 4-26 (115)
241 PF12681 Glyoxalase_2: Glyoxal 25.7 34 0.00074 19.1 0.7 16 115-130 7-23 (108)
242 COG0529 CysC Adenylylsulfate k 25.6 1.4E+02 0.003 19.8 3.4 37 92-128 38-74 (197)
243 cd01027 TOPRIM_RNase_M5_like T 25.4 43 0.00092 18.5 1.0 22 78-99 50-71 (81)
244 PRK15312 antimicrobial resista 25.3 2.6E+02 0.0056 20.0 6.1 51 13-63 13-65 (298)
245 PRK12380 hydrogenase nickel in 25.1 1.1E+02 0.0024 18.1 2.8 23 87-109 4-26 (113)
246 PHA02324 hypothetical protein 25.0 39 0.00084 16.2 0.7 9 80-88 38-46 (47)
247 TIGR00667 aat leucyl/phenylala 25.0 2.1E+02 0.0046 18.9 8.5 68 39-112 90-157 (185)
248 COG1064 AdhP Zn-dependent alco 24.9 1.1E+02 0.0025 22.2 3.3 40 88-128 174-213 (339)
249 TIGR02143 trmA_only tRNA (urac 24.9 1.2E+02 0.0026 22.0 3.5 35 76-117 281-315 (353)
250 cd04803 CBS_pair_15 The CBS do 24.6 1.5E+02 0.0031 16.9 4.5 30 36-65 87-116 (122)
251 COG2231 Uncharacterized protei 24.6 48 0.001 22.2 1.3 39 87-129 121-159 (215)
252 COG2265 TrmA SAM-dependent met 24.5 1.3E+02 0.0029 22.6 3.7 48 76-128 364-415 (432)
253 cd04618 CBS_pair_5 The CBS dom 24.4 1.4E+02 0.003 16.6 4.4 68 34-112 11-79 (98)
254 TIGR00055 uppS undecaprenyl di 23.9 95 0.0021 21.1 2.6 31 82-112 20-50 (226)
255 PF05292 MCD: Malonyl-CoA deca 23.9 3E+02 0.0065 20.2 12.8 104 5-108 89-220 (354)
256 PRK14837 undecaprenyl pyrophos 23.7 96 0.0021 21.2 2.6 31 82-112 27-57 (230)
257 cd08361 PpCmtC_N N-terminal do 23.6 70 0.0015 18.7 1.8 17 115-131 18-35 (124)
258 cd04615 CBS_pair_2 The CBS dom 23.4 1.5E+02 0.0032 16.5 4.5 29 38-66 15-43 (113)
259 KOG0688 Peptide chain release 23.4 3E+02 0.0066 20.1 5.9 68 35-106 129-197 (431)
260 PF14871 GHL6: Hypothetical gl 23.3 98 0.0021 18.9 2.4 25 86-110 38-62 (132)
261 cd05017 SIS_PGI_PMI_1 The memb 23.0 1.7E+02 0.0036 17.2 3.4 35 91-126 57-91 (119)
262 cd04601 CBS_pair_IMPDH This cd 23.0 1.5E+02 0.0032 16.3 4.4 31 36-66 75-105 (110)
263 cd04586 CBS_pair_BON_assoc Thi 22.9 1.7E+02 0.0037 17.1 3.8 18 49-66 27-44 (135)
264 cd08358 Glo_EDI_BRP_like_21 Th 22.9 51 0.0011 20.0 1.1 17 112-128 11-28 (127)
265 cd04602 CBS_pair_IMPDH_2 This 22.7 1.6E+02 0.0034 16.6 4.1 30 36-65 79-108 (114)
266 cd08349 BLMA_like Bleomycin bi 22.7 52 0.0011 18.4 1.1 15 114-128 9-24 (112)
267 PF00289 CPSase_L_chain: Carba 22.6 1.2E+02 0.0026 17.9 2.6 30 94-123 14-43 (110)
268 cd04584 CBS_pair_ACT_assoc Thi 22.6 1.6E+02 0.0035 16.6 3.7 18 49-66 26-43 (121)
269 cd04637 CBS_pair_24 The CBS do 22.5 1.6E+02 0.0035 16.7 4.5 30 36-65 87-116 (122)
270 COG2428 Uncharacterized conser 22.4 1.3E+02 0.0029 19.5 2.9 45 91-135 14-58 (196)
271 cd04612 CBS_pair_SpoIVFB_EriC_ 22.2 1.5E+02 0.0033 16.3 4.5 31 36-66 76-106 (111)
272 cd04608 CBS_pair_PALP_assoc Th 21.9 1.8E+02 0.0039 16.9 4.6 31 36-66 14-44 (124)
273 cd08346 PcpA_N_like N-terminal 21.8 76 0.0017 18.1 1.8 16 114-129 12-28 (126)
274 PF04555 XhoI: Restriction end 21.5 2E+02 0.0044 19.0 3.6 36 76-111 143-178 (196)
275 PF01155 HypA: Hydrogenase exp 21.4 1.1E+02 0.0025 18.0 2.4 23 88-110 5-27 (113)
276 COG4353 Uncharacterized conser 21.3 2.4E+02 0.0052 18.2 4.8 51 55-105 36-87 (192)
277 cd04620 CBS_pair_7 The CBS dom 21.3 1.7E+02 0.0037 16.4 4.0 26 40-65 84-109 (115)
278 KOG1489 Predicted GTP-binding 21.2 1E+02 0.0023 22.4 2.5 20 80-99 255-274 (366)
279 PF13344 Hydrolase_6: Haloacid 21.1 1.5E+02 0.0033 16.9 2.8 24 104-127 78-101 (101)
280 cd02205 CBS_pair The CBS domai 21.1 1.6E+02 0.0034 16.0 4.6 32 35-66 12-43 (113)
281 cd04630 CBS_pair_17 The CBS do 20.8 1.7E+02 0.0038 16.4 4.5 31 36-66 13-44 (114)
282 PRK00564 hypA hydrogenase nick 20.8 1.5E+02 0.0033 17.7 2.8 23 88-110 5-27 (117)
283 PF00925 GTP_cyclohydro2: GTP 20.5 61 0.0013 20.7 1.2 42 81-129 122-164 (169)
284 cd00475 CIS_IPPS Cis (Z)-Isopr 20.5 1.2E+02 0.0026 20.5 2.6 31 82-112 21-51 (221)
285 PF01751 Toprim: Toprim domain 20.5 76 0.0017 18.0 1.5 32 78-110 65-96 (100)
286 PRK14841 undecaprenyl pyrophos 20.4 1.2E+02 0.0027 20.7 2.6 31 82-112 24-54 (233)
287 PRK10310 PTS system galactitol 20.4 1.7E+02 0.0036 16.6 2.9 23 85-107 9-33 (94)
288 cd04626 CBS_pair_13 The CBS do 20.2 1.8E+02 0.0038 16.2 4.3 31 36-66 13-43 (111)
289 cd04636 CBS_pair_23 The CBS do 20.0 2E+02 0.0043 16.7 3.4 17 50-66 27-43 (132)
No 1
>PTZ00330 acetyltransferase; Provisional
Probab=99.87 E-value=1.3e-20 Score=117.27 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=94.1
Q ss_pred EEEeecCcCChHHHHHHHHHcCCCC-CCHHHHHHHhcc---CC-ceEEEEEccCCceEEEEEEecC------CceEEEEe
Q 048638 8 ILRRTISDLDINHLNSVFVAVGFPR-RDPDKIRVALEN---TS-SLLWIEYEKTRRPVAFARATGD------DVFNAIVW 76 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~~~~-~~~~~~~~~~~~---~~-~~~~~~~~~~~~ivG~~~~~~~------~~~~~~i~ 76 (147)
..+|+++++|++.+.+++....... .+.+.+...... .. ...+++...+|++||++.+... +...+++.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 5689999999999999987654422 233334333322 11 1223333478899999987521 22246888
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
.++|+|+|||+|+|+.|++.+.++++..+...+.+.+|.++++||+++||+..+
T Consensus 87 ~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~ 140 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACE 140 (147)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEec
Confidence 999999999999999999999999999999999999999999999999999755
No 2
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.86 E-value=9e-21 Score=117.57 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=92.8
Q ss_pred EEEeecCcCChHHHHHHHHHcCCCCCC----HHHHHHHhccCCceEEEEEccCCceEEEEEEecC-----CceEEEEeEE
Q 048638 8 ILRRTISDLDINHLNSVFVAVGFPRRD----PDKIRVALENTSSLLWIEYEKTRRPVAFARATGD-----DVFNAIVWDV 78 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-----~~~~~~i~~~ 78 (147)
..+|+++++|++.+.+++....-.... .+.+...+..+...++++. .++++||++.+... ....++|..+
T Consensus 4 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~-~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 4 CELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLAL-LDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred cEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEE-ECCEEEEEEEEEecccccccchhheehee
Confidence 457899999999999997653221112 2234444444445556665 78999999998632 1223568899
Q ss_pred EECcCccCCChHHHHHHHHHHHHHHcCcceEEeec---CcchhhcchhcCCeeCC
Q 048638 79 VVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYS---EPRVLGFYRPLGFVADP 130 (147)
Q Consensus 79 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~---n~~~~~~y~k~Gf~~~~ 130 (147)
+|+|++||+|+|+.|++.+++.+++.|++.+.+.+ |.+|++||+++||+...
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 99999999999999999999999999999888864 78999999999998643
No 3
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.84 E-value=6.9e-20 Score=111.58 Aligned_cols=117 Identities=20% Similarity=0.338 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHcCCCCC-CHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCc---eEEEEeEEEECcCccCCChHHH
Q 048638 17 DINHLNSVFVAVGFPRR-DPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDV---FNAIVWDVVVDPSYQGMGLGKA 92 (147)
Q Consensus 17 d~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~---~~~~i~~~~v~~~~rg~Gig~~ 92 (147)
.++.+.++ .+...+.+ +.-.......+.+++++++.+.++..||++.+..+.. ..++|.+++|+++|||+|||++
T Consensus 26 ~l~~im~L-i~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~a 104 (165)
T KOG3139|consen 26 YLADIMRL-IDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKA 104 (165)
T ss_pred HHHHHHHH-HhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHH
Confidence 33344444 33344443 2223333445667788888744444799999884433 3599999999999999999999
Q ss_pred HHHHHHHHHHHcCcceEEeec---CcchhhcchhcCCeeCCCCce
Q 048638 93 VMERLIDELLEKGVCNIALYS---EPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~~---n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
|++.+++.++.+|+..+++.| |.+|.++|+++||+......+
T Consensus 105 Lvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~ 149 (165)
T KOG3139|consen 105 LVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFR 149 (165)
T ss_pred HHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeE
Confidence 999999999999999999974 899999999999997654333
No 4
>PRK03624 putative acetyltransferase; Provisional
Probab=99.84 E-value=1.7e-19 Score=110.98 Aligned_cols=121 Identities=24% Similarity=0.414 Sum_probs=93.4
Q ss_pred EEEeecCcCChHHHHHHHHHcCCCCC--C-HHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCc
Q 048638 8 ILRRTISDLDINHLNSVFVAVGFPRR--D-PDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSY 84 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~ 84 (147)
..+|+++++|.+.+.+++...+.... . ...+...+......++++. .++++||++.+..... ..++..++|+|+|
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~vG~~~~~~~~~-~~~i~~i~v~p~~ 80 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAE-VGGEVVGTVMGGYDGH-RGWAYYLAVHPDF 80 (140)
T ss_pred eEEEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEE-cCCcEEEEEEeeccCC-CceEEEEEECHHH
Confidence 45899999999999999887643221 1 1223334444445566665 7889999998764333 3567889999999
Q ss_pred cCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 85 QGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 85 rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
||+|+|+.|++.+.++++..+++.+.+. .|.++.+||+|+||+..+
T Consensus 81 rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~ 129 (140)
T PRK03624 81 RGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQD 129 (140)
T ss_pred hCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCcccc
Confidence 9999999999999999999898887775 488999999999999643
No 5
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.82 E-value=3e-19 Score=112.36 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=89.7
Q ss_pred EeecCcCChHHHHHHHHHcCCCC-CCHHHHHHHhccCCceEEEEEccCCceEEEEEEe--cCCceEEEEeEEEECcCccC
Q 048638 10 RRTISDLDINHLNSVFVAVGFPR-RDPDKIRVALENTSSLLWIEYEKTRRPVAFARAT--GDDVFNAIVWDVVVDPSYQG 86 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~--~~~~~~~~i~~~~v~~~~rg 86 (147)
||+++.+|++++.+++....... .....+...........+++.+.++++||++.+. +......++..++|+|++||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 57899999999999987753322 1111111222223344555553577999998764 33334578889999999999
Q ss_pred CChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 87 MGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+|+|++|++.++++++..+...+.+. .|.++++||+|+||+...
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 99999999999999998888887765 499999999999998633
No 6
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.82 E-value=4.1e-19 Score=107.94 Aligned_cols=114 Identities=25% Similarity=0.370 Sum_probs=85.8
Q ss_pred EeecCcCChHHHHHHHHHcCCCCCCHH----HHHHHhccCCceEEEEEccCCceEEEEEEecC-------CceEEEEeEE
Q 048638 10 RRTISDLDINHLNSVFVAVGFPRRDPD----KIRVALENTSSLLWIEYEKTRRPVAFARATGD-------DVFNAIVWDV 78 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-------~~~~~~i~~~ 78 (147)
+|+++++|.+++.+++..+........ .+...+. +..++++. ++|++||++.+.+. ....+++..+
T Consensus 2 iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v 78 (127)
T PF13527_consen 2 IRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYG--PGRCVVAE-DDGKIVGHVGLIPRRLSVGGKKFKAAYIGDV 78 (127)
T ss_dssp EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH--TTEEEEEE-ETTEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccC--cCcEEEEE-ECCEEEEEEEEEEEEEEECCEEEEEEEEEEE
Confidence 789999999999999777543333332 1222222 35677777 69999999988632 2246889999
Q ss_pred EECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 79 VVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 79 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
+|+|+|||+|+|++|++++.+.+++.|+..+.+.+ ...+||+++||+.
T Consensus 79 ~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 79 AVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRRFGFEY 126 (127)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHHTTEEE
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhcCCCEE
Confidence 99999999999999999999999999999888876 4478999999985
No 7
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.3e-18 Score=104.92 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=95.3
Q ss_pred ceEEEeecCcCChHHHHHHHHHc-CC------CCCCHHHHHHH--hccCCceEEEEE-c-cCCceEEEEEEec-----CC
Q 048638 6 GFILRRTISDLDINHLNSVFVAV-GF------PRRDPDKIRVA--LENTSSLLWIEY-E-KTRRPVAFARATG-----DD 69 (147)
Q Consensus 6 ~~~~ir~~~~~d~~~l~~l~~~~-~~------~~~~~~~~~~~--~~~~~~~~~~~~-~-~~~~ivG~~~~~~-----~~ 69 (147)
+...||++++.|.+.+..|+.+. .+ ...+...+... ++++-..++++. + .++.++|++.+.. .+
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~ 81 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLG 81 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccc
Confidence 45679999999999999998764 11 22355555552 343333344433 1 2678999999872 33
Q ss_pred ceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 70 VFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 70 ~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
....++.+++|.|+|||+|+|+.|++.+.+.+.+.|..++... -|.+|+.||++.|++...
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~ 145 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLK 145 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccc
Confidence 3578999999999999999999999999999999998886654 599999999999999644
No 8
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.81 E-value=7.1e-19 Score=105.36 Aligned_cols=104 Identities=24% Similarity=0.452 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHc----CCCC---------CCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcC
Q 048638 17 DINHLNSVFVAV----GFPR---------RDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPS 83 (147)
Q Consensus 17 d~~~l~~l~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~ 83 (147)
|++++.+++... .+.. ...+.+...+...+..++++. .+|++||++.+.+ ...|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ivG~~~~~~----~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAE-EGGEIVGFAWLEP----DGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEE-ETTEEEEEEEEET----CEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEE-ECCEEEEEEEEcC----CCeEEEEEEChh
Confidence 566676666542 2221 245666667776666677776 8999999999972 233889999999
Q ss_pred ccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 84 YQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
|||+|+|++|++.+++.++. +++.+.+..|..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999977 9999999999999999999998
No 9
>PHA00673 acetyltransferase domain containing protein
Probab=99.81 E-value=1.7e-18 Score=106.82 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=92.7
Q ss_pred ecCcCChHHHHHHHHHcCCCC---------CCHHHHHHHhccCCceEEEEEccCCceEEEEEEe--c----CCceEEEEe
Q 048638 12 TISDLDINHLNSVFVAVGFPR---------RDPDKIRVALENTSSLLWIEYEKTRRPVAFARAT--G----DDVFNAIVW 76 (147)
Q Consensus 12 ~~~~~d~~~l~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~--~----~~~~~~~i~ 76 (147)
-++.+|++++.+|+.+..... .....+.....+++...+++. ++|++||++.+. + .+...+.|.
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~-~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVF-RGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEE-ECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 468899999999987742211 111224555566666677776 689999998876 2 223467899
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeec--CcchhhcchhcCCeeCC
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYS--EPRVLGFYRPLGFVADP 130 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~--n~~~~~~y~k~Gf~~~~ 130 (147)
.++|+|++||+|||++|++++++++++.|+..+++++ +.....||.+.|++...
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~ 145 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETN 145 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhc
Confidence 9999999999999999999999999999999999874 67889999999999644
No 10
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.81 E-value=1.9e-18 Score=108.99 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=91.2
Q ss_pred EEEeecCcCChHHHHHHHHHcC-------CCCCCHHHHHHHhccC-CceEEEEEccCCceEEEEEEecCC----ceEEEE
Q 048638 8 ILRRTISDLDINHLNSVFVAVG-------FPRRDPDKIRVALENT-SSLLWIEYEKTRRPVAFARATGDD----VFNAIV 75 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivG~~~~~~~~----~~~~~i 75 (147)
..+|+++++|++.+.+++.+.. .+..+.+.+...+... ....+++. .+|++||++.+.... .....
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~vG~~~~~~~~~~~~~~~~~- 81 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVAC-IDGDVVGHLTIDVQQRPRRSHVAD- 81 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEE-ECCEEEEEEEEecccccccceEEE-
Confidence 5689999999999999976431 1223445565555443 33455654 788999999986321 22233
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHH-cCcceEEee---cCcchhhcchhcCCeeCCC
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLE-KGVCNIALY---SEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~-~~~~~i~~~---~n~~~~~~y~k~Gf~~~~~ 131 (147)
..++|+|+|||+|+|+.|++.+.++++. .+...+.+. .|.++++||+|+||+..+.
T Consensus 82 ~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 141 (162)
T PRK10140 82 FGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGT 141 (162)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEee
Confidence 3589999999999999999999999998 487777664 4899999999999997554
No 11
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.81 E-value=1.1e-18 Score=118.39 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=95.3
Q ss_pred EEEeecCcCChHHHHHHHHHcC--C--CCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEe-cCCceEEEEeEEEECc
Q 048638 8 ILRRTISDLDINHLNSVFVAVG--F--PRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARAT-GDDVFNAIVWDVVVDP 82 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~-~~~~~~~~i~~~~v~~ 82 (147)
..+|+++++|++.+.+++.... + +...++.+...+. ....++++. .+|++||++.+. ......++|..++|+|
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~-~~~~~~v~~-~~g~iVG~~~~~~~~~~~~~eI~~i~V~P 193 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPTYPFPIHDPAYLLETMK-SNVVYFGVE-DGGKIIALASAEMDPENGNAEMTDFATLP 193 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCcEEEEEE-ECCEEEEEEEEecCCCCCcEEEEEEEECH
Confidence 5688999999999999987642 2 2234444555554 334455565 789999999874 2333468899999999
Q ss_pred CccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCCC
Q 048638 83 SYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~~ 131 (147)
+|||+|+|+.|++.++++++..|++.+.+. .|.++..+|+|+||+..+.
T Consensus 194 ~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 194 EYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 999999999999999999999999988775 4889999999999997543
No 12
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.81 E-value=1.6e-18 Score=112.37 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=91.7
Q ss_pred EEEeecCcCChHHHHHHHHHcC----C--CCCCHH----HHHH----HhccC-CceEEEEEccCCceEEEEEEecCCceE
Q 048638 8 ILRRTISDLDINHLNSVFVAVG----F--PRRDPD----KIRV----ALENT-SSLLWIEYEKTRRPVAFARATGDDVFN 72 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~----~--~~~~~~----~~~~----~~~~~-~~~~~~~~~~~~~ivG~~~~~~~~~~~ 72 (147)
..+|+++++|.+.+.+++.... + +..++. .+.. ..... ....+++...+|++||++.+.......
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~~ 123 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDTD 123 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCCc
Confidence 3799999999999999987641 1 111111 1111 11122 233344444688999999987443345
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+++..++|+|++||+|+|+.|++.+++++++.|+..+.+. .|.+|++||+|+||+...
T Consensus 124 ~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~ 184 (191)
T TIGR02382 124 ARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIES 184 (191)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCcccc
Confidence 7789999999999999999999999999998899998886 589999999999999644
No 13
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.81 E-value=1.4e-18 Score=110.54 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=89.9
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCCC-CHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCcc
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPRR-DPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQ 85 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~r 85 (147)
-..+|+++++|.+.+.+++....-... ........+... ..++++.+.++++||++.+.......+.+..++|+|+||
T Consensus 5 ~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~r 83 (169)
T PRK07922 5 AITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAV-QEFWVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAAR 83 (169)
T ss_pred CceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhc-CcEEEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHh
Confidence 357899999999999999765321111 111222233332 334555437889999998764434457788999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 86 GMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 86 g~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
|+|+|++|++++++++++.|++.+.+.+. +.+||+|+||+..+
T Consensus 84 gkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k~GF~~~~ 126 (169)
T PRK07922 84 GRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFARHGFVEID 126 (169)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHHCCCEECc
Confidence 99999999999999999999999887643 37899999999854
No 14
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.80 E-value=5.5e-18 Score=105.83 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred EEEeecCcCChH-HHHHHHHHcCCC-CCCHHHHHHHhc---c-C-CceEEEEEcc-CCceEEEEEEec------CCceEE
Q 048638 8 ILRRTISDLDIN-HLNSVFVAVGFP-RRDPDKIRVALE---N-T-SSLLWIEYEK-TRRPVAFARATG------DDVFNA 73 (147)
Q Consensus 8 ~~ir~~~~~d~~-~l~~l~~~~~~~-~~~~~~~~~~~~---~-~-~~~~~~~~~~-~~~ivG~~~~~~------~~~~~~ 73 (147)
..+|+++++|.+ .+..++...... ..+.+.+...+. . . ....+++.+. ++++||++.+.. .....+
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~ 86 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVG 86 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEE
Confidence 468999999988 588887764332 234444444442 2 2 2334444421 689999988741 112356
Q ss_pred EEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 74 IVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 74 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
++..++|+|+|||+|||+.|++.+++++++.|++.+.+.+.+...+||+|+||+..+
T Consensus 87 ~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g 143 (150)
T PLN02706 87 HIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKE 143 (150)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEeh
Confidence 788899999999999999999999999999999999998655557899999999754
No 15
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.79 E-value=3.4e-18 Score=125.72 Aligned_cols=123 Identities=18% Similarity=0.340 Sum_probs=96.4
Q ss_pred EEEeec-CcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEc-cCCceEEEEEEe------cCCceEEEEeEEE
Q 048638 8 ILRRTI-SDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYE-KTRRPVAFARAT------GDDVFNAIVWDVV 79 (147)
Q Consensus 8 ~~ir~~-~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~------~~~~~~~~i~~~~ 79 (147)
..+|++ +++|++.+.+++...++...+...+...+......++++.+ .+|++||++... .+.....++..++
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~ 162 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLA 162 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEE
Confidence 345665 78999999999988776555555555555555556677763 368999999753 1222346789999
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
|+|+|||+|+|++|++.+++++++.|+..+.+. .|..+++||+|+||+.++
T Consensus 163 V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~ 216 (547)
T TIGR03103 163 VDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIP 216 (547)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEee
Confidence 999999999999999999999999999988875 589999999999999643
No 16
>PRK07757 acetyltransferase; Provisional
Probab=99.79 E-value=3.3e-18 Score=107.04 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=88.9
Q ss_pred EEEeecCcCChHHHHHHHHHc---CCC-CCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcC
Q 048638 8 ILRRTISDLDINHLNSVFVAV---GFP-RRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPS 83 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~ 83 (147)
..+|+++++|++.+.+++... .+. ..+.+.+...+ ...+++. .+|++||++.+........++..++|+|+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~-~~~~lvG~~~l~~~~~~~~~i~~v~V~p~ 76 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENI----RDFYVAE-EEGEIVGCCALHILWEDLAEIRSLAVSED 76 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhcc----CcEEEEE-ECCEEEEEEEEEeccCCceEEEEEEECHH
Confidence 468999999999999997653 221 12333333222 2345555 77999999998855555678889999999
Q ss_pred ccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 84 YQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
|||+|+|+.|++.+.+.+.+.|...+.+.+ .+.+||+|+||+..+.
T Consensus 77 ~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 77 YRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFEKLGFREVDK 122 (152)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHHHCCCEEccc
Confidence 999999999999999999988988876654 3468999999998543
No 17
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.79 E-value=1.9e-18 Score=105.32 Aligned_cols=117 Identities=18% Similarity=0.285 Sum_probs=96.4
Q ss_pred EEeecCcCChHHHHHHHHHcCCCC----CCHHHHHHHhccCCceEEEEEccCCceEEEEEEec-CCceEEEEeEEEECcC
Q 048638 9 LRRTISDLDINHLNSVFVAVGFPR----RDPDKIRVALENTSSLLWIEYEKTRRPVAFARATG-DDVFNAIVWDVVVDPS 83 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~-~~~~~~~i~~~~v~~~ 83 (147)
.+|.++.+|+..+.++....+... .+.+.+...+.+ ++++. ++|.+||++.+.+ .....+.+..++|+|+
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~d----F~i~E-~~g~viGC~aL~~~~~~~~gE~~~laV~pd 76 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDD----FTIIE-RDGKVIGCAALHPVLEEDLGELRSLAVHPD 76 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhh----heeee-eCCcEEEEEeecccCccCeeeEEEEEECHH
Confidence 588999999999999988765543 244444444443 45555 7999999999994 5556899999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 84 YQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
|||+|+|..|++.+...|++.|++.+++-++ .+..||+++||+..+.
T Consensus 77 ~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 77 YRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFAERGFTRVDK 123 (153)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHHHcCCeECcc
Confidence 9999999999999999999999999998764 6689999999998554
No 18
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.79 E-value=4.7e-18 Score=110.44 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=91.5
Q ss_pred EEEeecCcCChHHHHHHHHHc----CC--CCCCH----HHHHHHhc----cC-CceEEEEEccCCceEEEEEEecCCceE
Q 048638 8 ILRRTISDLDINHLNSVFVAV----GF--PRRDP----DKIRVALE----NT-SSLLWIEYEKTRRPVAFARATGDDVFN 72 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~----~~--~~~~~----~~~~~~~~----~~-~~~~~~~~~~~~~ivG~~~~~~~~~~~ 72 (147)
..+|+++++|++.+.+++... .+ +..+. ..+...+. .. ....+++.+.+|++||++.+.......
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~~ 126 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDTD 126 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCCc
Confidence 457899999999999997653 11 11111 12222221 11 224555554678999999987544445
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+++..++|+|+|||+|+|+.|++.+++++++.|++.+.+. .|.++.+||+|+||+..+
T Consensus 127 ~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~ 187 (194)
T PRK10975 127 ARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIES 187 (194)
T ss_pred eEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeE
Confidence 7788899999999999999999999999999999988875 488999999999999754
No 19
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.79 E-value=5.8e-18 Score=105.31 Aligned_cols=120 Identities=24% Similarity=0.328 Sum_probs=88.6
Q ss_pred EEEeecCcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCC
Q 048638 8 ILRRTISDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGM 87 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~ 87 (147)
+.+|+++++|.+.+..+.............+... . .......+...++++||++.+..... ...+..++|+|+|||+
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~ 78 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFPWSEKTFASN-Q-GERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQ 78 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCCCCHHHHHHH-H-hcCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccC
Confidence 4689999999999999975542222222333222 1 22332222237889999998874332 3567889999999999
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
|+|+.+++.+.+.+++.+...+.+. .|.++.+||+|+||+..+
T Consensus 79 G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~ 124 (146)
T PRK09491 79 GLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVT 124 (146)
T ss_pred CHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEee
Confidence 9999999999999988888887775 489999999999999644
No 20
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.78 E-value=3.9e-18 Score=95.45 Aligned_cols=77 Identities=26% Similarity=0.504 Sum_probs=65.6
Q ss_pred ceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 47 SLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
..++++. +++++||++.+...+. ..+|..++|+|++||+|+|+.|++.+.+.+.. ..+.+.+++.+.+||+++||
T Consensus 3 ~~~~~~~-~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~~GF 77 (79)
T PF13508_consen 3 ERFFVAE-DDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEKLGF 77 (79)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHHTTE
T ss_pred cEEEEEE-ECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHHCcC
Confidence 3456665 8999999999987777 78999999999999999999999999888843 55677788999999999999
Q ss_pred ee
Q 048638 127 VA 128 (147)
Q Consensus 127 ~~ 128 (147)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 21
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.78 E-value=1.3e-17 Score=101.54 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHH
Q 048638 17 DINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMER 96 (147)
Q Consensus 17 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~ 96 (147)
|.+.+.++.........+.+.+...+.......+++. .++++||++.+..... ...+..++|+|+|||+|+|+.|++.
T Consensus 1 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vg~~~~~~~~~-~~~i~~~~v~~~~rg~G~g~~ll~~ 78 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLAR-IGGKVVGYAGVQIVLD-EAHILNIAVKPEYQGQGIGRALLRE 78 (131)
T ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHhcCCCceEEEEe-cCCeEEEEEEEEecCC-CeEEEEEEECHHHcCCCHHHHHHHH
Confidence 4567777754433223355666666665444444444 6899999999875443 4568899999999999999999999
Q ss_pred HHHHHHHcCcceEEee---cCcchhhcchhcCCeeCCC
Q 048638 97 LIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 97 ~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~~ 131 (147)
+.+++++.+.+.+.+. .|..+.+||+++||+..+.
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 79 LIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred HHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 9999999888888875 4888999999999997553
No 22
>PRK10314 putative acyltransferase; Provisional
Probab=99.77 E-value=2.1e-18 Score=107.98 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=85.2
Q ss_pred eecCcCChHHHHHHHHHcCCCCC--CHHHHHHHhccCCceEEEEEccCCceEEEEEEecCC--ceEEEEeEEEECcCccC
Q 048638 11 RTISDLDINHLNSVFVAVGFPRR--DPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDD--VFNAIVWDVVVDPSYQG 86 (147)
Q Consensus 11 r~~~~~d~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~--~~~~~i~~~~v~~~~rg 86 (147)
..++.++..++..+-....+... +...+...-..+....++++ .++++||++.+.... ....+|..++|+|+|||
T Consensus 10 ~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~-~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG 88 (153)
T PRK10314 10 SELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGW-KNDELVAYARILKSDDDLEPVVIGRVIVSEALRG 88 (153)
T ss_pred hhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEE-ECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhC
Confidence 44555556666666555433221 11112111111235566666 688999999988543 23578999999999999
Q ss_pred CChHHHHHHHHHHHHHHc-CcceEEeecCcchhhcchhcCCeeCCC
Q 048638 87 MGLGKAVMERLIDELLEK-GVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~-~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
+|+|+.|++.++++++.. +...+.+.++..+.+||+|+||++.++
T Consensus 89 ~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 89 EKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCC
Confidence 999999999999999876 677888888888999999999998654
No 23
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.76 E-value=5.2e-18 Score=95.65 Aligned_cols=73 Identities=27% Similarity=0.463 Sum_probs=65.6
Q ss_pred cCCceEEEEEEecCC-----ceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCC
Q 048638 55 KTRRPVAFARATGDD-----VFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGF 126 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~-----~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf 126 (147)
++|++||++.+.... ...+++..++|+|+|||+|+|+.|++.+++.+++.|++.+.+. .|..+.+||+|+||
T Consensus 3 ~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf 82 (83)
T PF00583_consen 3 EDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGF 82 (83)
T ss_dssp ETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTE
T ss_pred CCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCC
Confidence 789999999988322 3589999999999999999999999999999999999988886 48899999999999
Q ss_pred e
Q 048638 127 V 127 (147)
Q Consensus 127 ~ 127 (147)
+
T Consensus 83 ~ 83 (83)
T PF00583_consen 83 E 83 (83)
T ss_dssp E
T ss_pred C
Confidence 6
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.76 E-value=1e-17 Score=120.45 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=91.4
Q ss_pred cceEEEeecCcCChHHHHHHHHH---cCCCC-CCHHHHHHHhccCCceEEEEEccCCceEEEEEEecC-CceEEEEeEEE
Q 048638 5 RGFILRRTISDLDINHLNSVFVA---VGFPR-RDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGD-DVFNAIVWDVV 79 (147)
Q Consensus 5 ~~~~~ir~~~~~d~~~l~~l~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~~ 79 (147)
..+..+|+++++|++.+.+++.. .++.. .+.+.+ ......++++. .+++++|++.+... ....+++..++
T Consensus 280 d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l----~~~~~~~~V~~-~dg~iVG~~~~~~~~~~~~~~I~~l~ 354 (429)
T TIGR01890 280 EAFESIRQATIDDIGGIAALIRPLEEQGILVRRSREYL----EREISEFSIIE-HDGNIIGCAALYPYAEEDCGEMACLA 354 (429)
T ss_pred cchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHH----HhhcCcEEEEE-ECCEEEEEEEEEecCCCCeEEEEEEE
Confidence 34667999999999999999753 23322 122222 22223345554 78999999988754 33467899999
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
|+|+|||+|+|++|+++++++++++|++.+.+.+ ..+.+||+++||+..+.
T Consensus 355 V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 355 VSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWFRERGFQTASV 405 (429)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHHHHCCCEECCh
Confidence 9999999999999999999999999998876553 34579999999998654
No 25
>PLN02825 amino-acid N-acetyltransferase
Probab=99.76 E-value=5.3e-18 Score=122.86 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=94.5
Q ss_pred ccceEEEeecCcCChHHHHHHHHHc---CCC-CCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecC-CceEEEEeEE
Q 048638 4 SRGFILRRTISDLDINHLNSVFVAV---GFP-RRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGD-DVFNAIVWDV 78 (147)
Q Consensus 4 ~~~~~~ir~~~~~d~~~l~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~ 78 (147)
.+.+..+|+++.+|++.+.+++... ++. ..+.+.+...+ ..++++. .+|++||++.+.+. ....+++..+
T Consensus 364 ~~~~e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~ei----~~f~V~e-~Dg~IVG~aal~~~~~~~~aEI~~l 438 (515)
T PLN02825 364 SDMYEGTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLRAL----DSFVVVE-REGSIIACAALFPFFEEKCGEVAAI 438 (515)
T ss_pred cChHhhheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHhcC----CcEEEEE-ECCEEEEEEEEEeecCCCcEEEEEE
Confidence 4457789999999999999998653 222 22344443332 2355554 88999999988743 2346789999
Q ss_pred EECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 79 VVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 79 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
+|+|+|||+|+|+.|++++++.+++.|++.+.+.+ ..+.+||+++||+..+
T Consensus 439 aV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k~GF~~~~ 489 (515)
T PLN02825 439 AVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVRRGFSECS 489 (515)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHHCCCEEeC
Confidence 99999999999999999999999999999998876 4568999999999744
No 26
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.75 E-value=8.6e-18 Score=121.29 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=92.6
Q ss_pred ccceEEEeecCcCChHHHHHHHHH---cCCCC-CCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCC-ceEEEEeEE
Q 048638 4 SRGFILRRTISDLDINHLNSVFVA---VGFPR-RDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDD-VFNAIVWDV 78 (147)
Q Consensus 4 ~~~~~~ir~~~~~d~~~l~~l~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~-~~~~~i~~~ 78 (147)
...+..+|+++++|++.+.+++.. .++.. .+.+.+. .....++++. .++++||++.+.... ...++|..+
T Consensus 291 ~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~----~~~~~~~va~-~dg~iVG~~~~~~~~~~~~~~I~~l 365 (441)
T PRK05279 291 MESLEQLRRATIDDVGGILELIRPLEEQGILVRRSREQLE----REIDKFTVIE-RDGLIIGCAALYPFPEEKMGEMACL 365 (441)
T ss_pred cCchHHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHh----cccCcEEEEE-ECCEEEEEEEEEEcCCCCeEEEEEE
Confidence 345678999999999999998753 23321 2223232 2223355655 789999999877432 346789999
Q ss_pred EECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 79 VVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 79 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
+|+|+|||+|+|++|++++.+++++.|+..+.+.+ ..+.+||+++||+..+.
T Consensus 366 ~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 366 AVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLERGFVPVDV 417 (441)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHHCcCEECCh
Confidence 99999999999999999999999999998887654 56899999999997553
No 27
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.75 E-value=2.8e-17 Score=103.06 Aligned_cols=121 Identities=21% Similarity=0.388 Sum_probs=87.3
Q ss_pred EeecCcCChHHHHHHHHHc----CCCC----CCHHHHHHHhc----cCCceEEEEEccCCceEEEEEEecC--CceEEEE
Q 048638 10 RRTISDLDINHLNSVFVAV----GFPR----RDPDKIRVALE----NTSSLLWIEYEKTRRPVAFARATGD--DVFNAIV 75 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~----~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~ivG~~~~~~~--~~~~~~i 75 (147)
||+++++|++.+..+++.. .+.. .+.+.....+. ......+++.+.+|++||++.+... ....+.+
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 6899999999999998752 1211 23333444333 3445667666459999999998732 2234444
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHH-HHcCcceEEee---cCcchhhcchhcCCeeCCC
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDEL-LEKGVCNIALY---SEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~-~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~~ 131 (147)
. +.|.|++|++|+|+.|++.+++++ ...|++.+.+. .|.+++.||+++||+..+.
T Consensus 81 ~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 81 S-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp E-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred e-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 4 888899999999999999999999 77799998875 5999999999999997553
No 28
>PRK09831 putative acyltransferase; Provisional
Probab=99.75 E-value=2.4e-17 Score=102.69 Aligned_cols=110 Identities=20% Similarity=0.314 Sum_probs=81.3
Q ss_pred EEeecCcCChHHHHHHHHHcC---CC-CCCHH-----------HHHHHhccCCceEEEEEccCCceEEEEEEecCCceEE
Q 048638 9 LRRTISDLDINHLNSVFVAVG---FP-RRDPD-----------KIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNA 73 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~---~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 73 (147)
.+|+++++|.+.+.+++.... .. ..+++ .+...+. ...++++. .+|++||++.+.. .
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~~iiG~~~~~~-----~ 73 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA--KSQVRVAV-INAQPVGFITCIE-----H 73 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh--cCceEEEE-ECCEEEEEEEehh-----c
Confidence 478999999999999977530 00 11111 2223333 23456665 7899999998753 3
Q ss_pred EEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 74 IVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 74 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
++..++|+|++||+|+|++|++++++.+.. +.+.++..+++||+|+||+..+.
T Consensus 74 ~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k~Gf~~~g~ 126 (147)
T PRK09831 74 YIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFERYGFQTVKQ 126 (147)
T ss_pred eeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHHCCCEEeec
Confidence 577899999999999999999999998864 45556788999999999998664
No 29
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.74 E-value=3.2e-17 Score=122.31 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred EEeecCcCChHHHHHHHHHcCCC-CCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCC
Q 048638 9 LRRTISDLDINHLNSVFVAVGFP-RRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGM 87 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~ 87 (147)
.+|+++++|++.+.+++...... ...+..... +......++++. .+|++||++.+.......++|..++|+|+||||
T Consensus 465 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~-l~~~~~~~~Va~-~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 465 KVRPARLTDIDAIEGMVAYWAGLGENLPRSRNE-LVRDIGSFAVAE-HHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhhcccccCHHH-HhcccCcEEEEE-ECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCC
Confidence 58999999999999987643111 111111111 222223456665 789999999987554446789999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
|||+.|++.+++++++.|++.+.+.+ .+..||+|+||+..+.
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYek~GF~~~~~ 584 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFMKQGFSPTSK 584 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHHHCCCEECCc
Confidence 99999999999999999999888764 3479999999997653
No 30
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.73 E-value=2.9e-17 Score=102.82 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=86.6
Q ss_pred EeecC-cCChHHHHHHHHHc----CCCCC----CHHHHHHHhc-cCCceEEEEEccCCceEEEEEEec------CCceEE
Q 048638 10 RRTIS-DLDINHLNSVFVAV----GFPRR----DPDKIRVALE-NTSSLLWIEYEKTRRPVAFARATG------DDVFNA 73 (147)
Q Consensus 10 ir~~~-~~d~~~l~~l~~~~----~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ivG~~~~~~------~~~~~~ 73 (147)
+|+++ .+|++.+.+++++. .|... ..+.+...+. .+....+++. .+|+++|++.+.. ......
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~dg~~~g~~~~~~~~~~~~~~~~~~ 79 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAE-DDGEPIGYFEIYWPDEDYDADDGDR 79 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEE-ETTEEEEEEEEEEGGGSS---TTEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEE-ECCEEEEEEEEecccccccCCCCEE
Confidence 58899 99999999998653 22221 2233444554 4445567776 8999999998863 123356
Q ss_pred EEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCC
Q 048638 74 IVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 74 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
.+..++++|++||+|+|+.+++.+++.+.+. ++..+.+. .|.+++++|+|+||+.++
T Consensus 80 ~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g 140 (152)
T PF13523_consen 80 GIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVG 140 (152)
T ss_dssp EEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEE
T ss_pred EEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEee
Confidence 6888899999999999999999999999987 78888887 489999999999999744
No 31
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.73 E-value=1e-16 Score=102.55 Aligned_cols=126 Identities=23% Similarity=0.372 Sum_probs=96.3
Q ss_pred cceEEEeecCcCChH--HHHHHHHHcCC--CCCCHHHHHHHhccCCceEEEEEcc--CC----ceEEEEEEe-cCCc---
Q 048638 5 RGFILRRTISDLDIN--HLNSVFVAVGF--PRRDPDKIRVALENTSSLLWIEYEK--TR----RPVAFARAT-GDDV--- 70 (147)
Q Consensus 5 ~~~~~ir~~~~~d~~--~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~ivG~~~~~-~~~~--- 70 (147)
.....++++...|.. .+..+...... ...+...+...+...+...+++... ++ +++|++... ..+.
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 88 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSA 88 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccc
Confidence 345678888999988 66666433322 2245677777788777777777521 33 599999985 2221
Q ss_pred -eEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCc-ceEEee---cCcchhhcchhcCCeeCC
Q 048638 71 -FNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGV-CNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 71 -~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~-~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
..++|..++|+|+|||+|||+.|++.+.+.+...+. ..+.+. +|.+|+.||+|+||+...
T Consensus 89 ~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~ 153 (177)
T COG0456 89 DHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVK 153 (177)
T ss_pred cCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEe
Confidence 267899999999999999999999999999999886 677775 599999999999999754
No 32
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=4.7e-16 Score=97.35 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=93.2
Q ss_pred EEEeecCcCChHHHHHHHHHc------CC--CCCCHHHHHHHhcc---CCceEEEEEccCCceEEEEEEecCCce----E
Q 048638 8 ILRRTISDLDINHLNSVFVAV------GF--PRRDPDKIRVALEN---TSSLLWIEYEKTRRPVAFARATGDDVF----N 72 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~------~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ivG~~~~~~~~~~----~ 72 (147)
+.+|+.+..|++.+.++|+.. .| ...+.+.+...+.. .....+++.+.+|+++|++.+.+..+. .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 468999999999999999864 11 12244555544433 222455565456999999998744332 3
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
.....++|+|+.||+|+|++|++.+++.+...|++.+... .|.++.++.+++||+..+
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G 142 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVG 142 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEec
Confidence 3445799999999999999999999999999999887654 588999999999999744
No 33
>PRK10514 putative acetyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=98.45 Aligned_cols=116 Identities=21% Similarity=0.403 Sum_probs=80.0
Q ss_pred EEEeecCcCChHHHHHHHHHc-----CC-CCCCHHHHHHHhcc--CCceEEEEEccCCceEEEEEEecCCceEEEEeEEE
Q 048638 8 ILRRTISDLDINHLNSVFVAV-----GF-PRRDPDKIRVALEN--TSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVV 79 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~-----~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~ 79 (147)
..+|+++++|.+.+.+++... .+ ...+.+.+...+.. .....+++...++++||++.+.. ..+..++
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~-----~~~~~~~ 76 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG-----GHMEALF 76 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec-----CcEeEEE
Confidence 457999999999999988652 12 11222333322221 12334555435789999998753 2356799
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
|+|+|||||+|++|++.+.+.+. .+...+...|.++++||+|+||+..+
T Consensus 77 v~p~~rgkGig~~Ll~~~~~~~~--~i~~~v~~~N~~a~~~yek~Gf~~~~ 125 (145)
T PRK10514 77 VDPDVRGCGVGRMLVEHALSLHP--ELTTDVNEQNEQAVGFYKKMGFKVTG 125 (145)
T ss_pred ECHHhccCCHHHHHHHHHHHhcc--ccEEEeecCCHHHHHHHHHCCCEEec
Confidence 99999999999999999998753 22222234689999999999999754
No 34
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.70 E-value=5.8e-16 Score=91.75 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=95.3
Q ss_pred ceEEEeecCcCChHH-HHHHHHHcCC-CCCCHHHHHHHhcc----CC-ceEEEEEcc-CCceEEEEEEec------CCce
Q 048638 6 GFILRRTISDLDINH-LNSVFVAVGF-PRRDPDKIRVALEN----TS-SLLWIEYEK-TRRPVAFARATG------DDVF 71 (147)
Q Consensus 6 ~~~~ir~~~~~d~~~-l~~l~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~~-~~~ivG~~~~~~------~~~~ 71 (147)
+-..+|++..+|... +.+++.+..- ..-+++.+...+.. .+ ....|++|. .+++||.+.+.. .-..
T Consensus 5 ~~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~ 84 (150)
T KOG3396|consen 5 DGFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGS 84 (150)
T ss_pred CceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccc
Confidence 346789999999986 6666655322 23456666665532 23 334444433 368999998872 2233
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
.++|.+++|+++||||++|+.|+..+...++..|+-.+.+.+.+...+||+|+||...+
T Consensus 85 rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 85 RGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAG 143 (150)
T ss_pred cCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccc
Confidence 68899999999999999999999999999999999999999999999999999998543
No 35
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=95.44 Aligned_cols=120 Identities=23% Similarity=0.352 Sum_probs=93.1
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCCCCHHHHHHHhcc----CCceEEEEEccCCceEEEEEEec-----CCceEEEEeE
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPRRDPDKIRVALEN----TSSLLWIEYEKTRRPVAFARATG-----DDVFNAIVWD 77 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ivG~~~~~~-----~~~~~~~i~~ 77 (147)
.+++|..++.|...+.++......+... ...-..+.. .....+|+. ++|++||.+.+++ .......+..
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~~~e-~~~v~~lR~~~~~~~~LslVA~-d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGPGRE-AKLVDKLREGGRPDLTLSLVAE-DDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhcchH-HHHHHHHHhcCCcccceeEEEe-eCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 5678999999999999996555443332 333333332 345678887 6699999999872 2334667889
Q ss_pred EEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCC
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
++|+|+|||||||++|+...++.++..|...+.+..++ .+|.++||+....
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp---~YY~rfGF~~~~~ 131 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP---TYYSRFGFEPAAG 131 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc---ccccccCcEEccc
Confidence 99999999999999999999999999999999887665 4999999998554
No 36
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.69 E-value=1.2e-15 Score=106.04 Aligned_cols=118 Identities=14% Similarity=0.273 Sum_probs=94.1
Q ss_pred EEEeecCcCChHHHHHHHHHcC-C----CCCCHHHHHHHhccCCceEEEEE--c--cCCceEEEEEEecCCceEEEEeEE
Q 048638 8 ILRRTISDLDINHLNSVFVAVG-F----PRRDPDKIRVALENTSSLLWIEY--E--KTRRPVAFARATGDDVFNAIVWDV 78 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ivG~~~~~~~~~~~~~i~~~ 78 (147)
..||+++++|++.+.+|..... + ...+.+.+...+..+ . .+++. + .++.+||++.+..... .++|..+
T Consensus 187 ~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~-~~~~~~~d~~gd~givG~~~~~~~~~-~~~I~~l 263 (320)
T TIGR01686 187 LNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-E-IVTVSMSDRFGDSGIIGIFVFEKKEG-NLFIDDL 263 (320)
T ss_pred EEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-C-EEEEEEEecCCCCceEEEEEEEecCC-cEEEEEE
Confidence 3589999999999999976541 2 234667777777665 3 33332 2 1567999998875443 6789999
Q ss_pred EECcCccCCChHHHHHHHHHHHHHHcCcceEEee-----cCcchhhcchhcCCee
Q 048638 79 VVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY-----SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 79 ~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~-----~n~~~~~~y~k~Gf~~ 128 (147)
+|+|++||+|+|+.|++++.+.+++.|++.+.+. .|.+++.||+++||+.
T Consensus 264 ~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~ 318 (320)
T TIGR01686 264 CMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFED 318 (320)
T ss_pred EEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCcc
Confidence 9999999999999999999999999999988774 3899999999999985
No 37
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.69 E-value=6.2e-16 Score=99.85 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=90.0
Q ss_pred ceEEEeecCcCChHHHHHHHHHc----CCCCC---CHH----HHHHHhccCCceEEEEEccCCceEEEEEEecCC--ceE
Q 048638 6 GFILRRTISDLDINHLNSVFVAV----GFPRR---DPD----KIRVALENTSSLLWIEYEKTRRPVAFARATGDD--VFN 72 (147)
Q Consensus 6 ~~~~ir~~~~~d~~~l~~l~~~~----~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~--~~~ 72 (147)
+-..+|+++++|++.+.++..+. .|... ... .+...+.......|++. .+|++||++.+.... ...
T Consensus 5 ~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~iG~~~~~~~~~~~~~ 83 (186)
T PRK15130 5 HSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVE-CDGEKAGLVELVEINHVHRR 83 (186)
T ss_pred CeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEE-ECCEEEEEEEEEeecCCCCe
Confidence 34568999999999999986543 22211 111 12233334455567776 789999999886322 223
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCC
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+.+ .++|+|+|||+|+|+.+++.+.+++.+. +.+.+.+. .|.+|++||+|+||+..+
T Consensus 84 ~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~ 144 (186)
T PRK15130 84 AEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEG 144 (186)
T ss_pred EEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEE
Confidence 444 5899999999999999999999999865 88888875 589999999999999754
No 38
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.68 E-value=2.9e-15 Score=97.34 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=87.0
Q ss_pred EEEeecCcCChHHHHHHHHHc-----CCCCC------CHHH-------HHHHhccCCceEEEEEc-cCCceEEEEEEecC
Q 048638 8 ILRRTISDLDINHLNSVFVAV-----GFPRR------DPDK-------IRVALENTSSLLWIEYE-KTRRPVAFARATGD 68 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~-----~~~~~------~~~~-------~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~ 68 (147)
.++|+++++|.+.+.+++.+. .|... ..+. +......+....+++.. .++++||.+.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 458999999999999998752 22211 0111 12222333344455543 36799999998632
Q ss_pred C--c-eEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCC
Q 048638 69 D--V-FNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 69 ~--~-~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
. . ..+. ..+.|.|+|||+|+|+.+++.++++++.. |++.+.+. .|.+|+++|+|+||+..+
T Consensus 98 ~~~~~~~~e-ig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g 165 (194)
T PRK10809 98 VRGSFHACY-LGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEG 165 (194)
T ss_pred cCCCeeeEE-EEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEe
Confidence 1 2 2333 34789999999999999999999999985 99998876 499999999999999633
No 39
>PRK01346 hypothetical protein; Provisional
Probab=99.67 E-value=3.1e-15 Score=107.36 Aligned_cols=120 Identities=20% Similarity=0.144 Sum_probs=89.4
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCCC-CHHHHHHHhc-cCCceEEEEEccCCceEEEEEEecC------C--ceEEEEe
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPRR-DPDKIRVALE-NTSSLLWIEYEKTRRPVAFARATGD------D--VFNAIVW 76 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ivG~~~~~~~------~--~~~~~i~ 76 (147)
-..+|+++++|++++.+++... +... +.+.+..... ......+++. ++|++||++.+.+. + ....+|.
T Consensus 6 ~~~iR~~~~~D~~~i~~L~~~~-f~~~~~~~~~~~~~~~~~~~~~~va~-~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~ 83 (411)
T PRK01346 6 AITIRTATEEDWPAWFRAAATG-FGDSPSDEELEAWRALVEPDRTLGAF-DGDEVVGTAGAFDLRLTVPGGAVLPAAGVT 83 (411)
T ss_pred CceeecCCHHHHHHHHHHHHHH-cCCCCChHHHHHHHHhcCcCCeEEEE-ECCEEEEEEEEeccccccCCCCccceeEEE
Confidence 3458999999999999997654 3322 2333322221 1223456666 78899999997632 1 2368899
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
.++|+|+|||+|+|++||+++++.+++.|...+.+..+. .+||+|+||....
T Consensus 84 ~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~r~Gf~~~~ 135 (411)
T PRK01346 84 AVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYGRFGYGPAT 135 (411)
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHhhCCCeecc
Confidence 999999999999999999999999999998888887543 4799999999744
No 40
>PHA01807 hypothetical protein
Probab=99.66 E-value=2.2e-15 Score=93.87 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=79.7
Q ss_pred ecCcCChHHHHHHHHHc--CCCC----C-CHH---HHHHHhccCCceEEEEEccCCceEEEEEEecCCce-EEE---EeE
Q 048638 12 TISDLDINHLNSVFVAV--GFPR----R-DPD---KIRVALENTSSLLWIEYEKTRRPVAFARATGDDVF-NAI---VWD 77 (147)
Q Consensus 12 ~~~~~d~~~l~~l~~~~--~~~~----~-~~~---~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~-~~~---i~~ 77 (147)
.++.+|+..+..+.... .||. . .++ .+...+.+.....+++. .+|++||++.+...... ... +..
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~-~dg~lvG~~~l~~~~~~~~~~i~~l~~ 86 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVF-RDGKLAGIAVLVFEDDPHVGPCLGVQW 86 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEE-ECCEEEEEEEEEcCCCcceeeecccee
Confidence 45678888888876543 3443 1 122 22222334445556665 78999999998633221 222 344
Q ss_pred EEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhc
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPL 124 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~ 124 (147)
++|+|+|||+|+|+.||+.++++++..|+..+.++ .|.++++||++.
T Consensus 87 lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 87 QYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 79999999999999999999999999999988887 478999999874
No 41
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.65 E-value=9.8e-15 Score=93.69 Aligned_cols=122 Identities=12% Similarity=0.195 Sum_probs=88.9
Q ss_pred EEEeecCcCChHHHHHHHHHc--------CCCC--CCHHHHHHHhcc-------CCceEEEEEccCCceEEEEEEec--C
Q 048638 8 ILRRTISDLDINHLNSVFVAV--------GFPR--RDPDKIRVALEN-------TSSLLWIEYEKTRRPVAFARATG--D 68 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~--------~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~ivG~~~~~~--~ 68 (147)
..+|+++++|.+.+..++... .|+. .+.+.....+.. .....+++. .+|++||++.+.. .
T Consensus 11 l~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~~ 89 (179)
T PRK10151 11 LELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIF-KEDELIGVLSFNRIEP 89 (179)
T ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEE-ECCEEEEEEEEEeecc
Confidence 468999999999999997421 2222 233433333322 122345655 6889999998763 2
Q ss_pred CceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCCC
Q 048638 69 DVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 69 ~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~~ 131 (147)
....+.++ +.++|+|||+|+|+.+++.+++++++. +.+++.+. .|.+|+++++|+||+..+.
T Consensus 90 ~~~~~~ig-~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 90 LNKTAYIG-YWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGC 155 (179)
T ss_pred CCCceEEE-EEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 22345565 679999999999999999999999875 78888775 5999999999999997543
No 42
>PRK10562 putative acetyltransferase; Provisional
Probab=99.64 E-value=6.1e-15 Score=91.61 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=77.6
Q ss_pred EeecCcCChHHHHHHHHHcC-C--CCCCHHHHH-------HHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEE
Q 048638 10 RRTISDLDINHLNSVFVAVG-F--PRRDPDKIR-------VALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVV 79 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~~-~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~ 79 (147)
+|+++.+|++.+.+++.... + +......+. ..+. .....+++. .++++||++.+... ..+..++
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~-~~~~~iG~~~~~~~----~~i~~~~ 75 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYL-PAAQTWVWE-EDGKLLGFVSVLEG----RFVGALF 75 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhc-CcccEEEEE-ECCEEEEEEEEeec----cEEEEEE
Confidence 78999999999999986542 1 111111111 1112 223345554 67899999988643 2477899
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
|+|+|||+|+|+.|++.+.+.+.. +...+...|..+.+||+|+||+..+
T Consensus 76 v~~~~rg~G~g~~ll~~~~~~~~~--~~~~v~~~N~~s~~~y~k~Gf~~~~ 124 (145)
T PRK10562 76 VAPKAVRRGIGKALMQHVQQRYPH--LSLEVYQKNQRAVNFYHAQGFRIVD 124 (145)
T ss_pred ECHHHcCCCHHHHHHHHHHhhCCe--EEEEEEcCChHHHHHHHHCCCEEcc
Confidence 999999999999999999885421 1111223589999999999999844
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.64 E-value=2.8e-15 Score=103.12 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=82.5
Q ss_pred eecCcCChHHHHHHHHHc----CCCCCCHHHHHHHhcc---CCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcC
Q 048638 11 RTISDLDINHLNSVFVAV----GFPRRDPDKIRVALEN---TSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPS 83 (147)
Q Consensus 11 r~~~~~d~~~l~~l~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~ 83 (147)
.+++++|++++.+|...+ +.+..+.+ +...+.. .....+++. .++++||++.+.........+..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQ-VLRGLREPGAGHTRHLVAV-DSDPIVGYANLVPARGTDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHH-HHhhccccCCCCceEEEEE-ECCEEEEEEEEEcCCCCcceEEEEEECHh
Confidence 468889999999987754 11222333 3344432 223456666 78899999998765433467889999999
Q ss_pred ccCCChHHHHHHHHHHHHHHcCcceEEee-cCcchhhcchhcCCeeCC
Q 048638 84 YQGMGLGKAVMERLIDELLEKGVCNIALY-SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~-~n~~~~~~y~k~Gf~~~~ 130 (147)
|||+|+|+.|++.+++.+. +.-.+.+. .|.++++||+++||+...
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~~Gf~~~~ 127 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASRLGLVPTR 127 (292)
T ss_pred hcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHHCCCEEcc
Confidence 9999999999999999864 22223333 478999999999998643
No 44
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.64 E-value=3.6e-15 Score=101.97 Aligned_cols=76 Identities=28% Similarity=0.506 Sum_probs=66.3
Q ss_pred EEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeC
Q 048638 50 WIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 50 ~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~ 129 (147)
+.+.++++++||++.+.. ..|..++|+|+|||+|+|+.|++.+++++++.|++.+.+.++..+.+||+|+||+..
T Consensus 8 ~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~ 82 (297)
T cd02169 8 VGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFKEL 82 (297)
T ss_pred EEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCEEe
Confidence 333446799999998863 248899999999999999999999999999999999999987778899999999976
Q ss_pred C
Q 048638 130 P 130 (147)
Q Consensus 130 ~ 130 (147)
+
T Consensus 83 ~ 83 (297)
T cd02169 83 A 83 (297)
T ss_pred c
Confidence 6
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.63 E-value=2.3e-14 Score=98.57 Aligned_cols=122 Identities=22% Similarity=0.275 Sum_probs=82.3
Q ss_pred EEeecC-cCChHHHHHHHHHcC--CCC---CCHHHHHHHhcc---CCceEEEEEcc-CCceEEEEEEec--CCceEEEEe
Q 048638 9 LRRTIS-DLDINHLNSVFVAVG--FPR---RDPDKIRVALEN---TSSLLWIEYEK-TRRPVAFARATG--DDVFNAIVW 76 (147)
Q Consensus 9 ~ir~~~-~~d~~~l~~l~~~~~--~~~---~~~~~~~~~~~~---~~~~~~~~~~~-~~~ivG~~~~~~--~~~~~~~i~ 76 (147)
.+++++ ..|.+.+.++..... .+. .+.+.+...... .+...+++.+. +|++||++.+.. ......++.
T Consensus 151 ~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~ 230 (292)
T TIGR03448 151 TVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEVY 230 (292)
T ss_pred EeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEEE
Confidence 345554 457777777643321 111 123333322111 12335666533 689999976553 222346677
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCeeCC
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
.++|+|+|||||+|+.|+..+++++++.|...+.+. .|.++.+||+|+||++..
T Consensus 231 ~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~ 287 (292)
T TIGR03448 231 VVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAE 287 (292)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcc
Confidence 789999999999999999999999999888887765 488999999999999755
No 46
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.63 E-value=4e-15 Score=93.34 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=85.4
Q ss_pred EEeecCcCChHHHHHHHHHc---CC----CCCCHHH---H-HHHhccCCceEEEEEccCCceEEEEEEecCC--ceEEEE
Q 048638 9 LRRTISDLDINHLNSVFVAV---GF----PRRDPDK---I-RVALENTSSLLWIEYEKTRRPVAFARATGDD--VFNAIV 75 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~---~~----~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~--~~~~~i 75 (147)
.+||++++|.+.+.++..+. .+ +..+.+. + ...........+++. .+|++||++.+.... ...+.+
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~vG~~~~~~~~~~~~~~~~ 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVC-QESRPIGVISFTDINLVHKSAFW 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEE-ECCEEEEEEEEEecChhhCeEEE
Confidence 37899999999999886432 11 1122222 2 222233333456665 789999999987433 234445
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCC
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+ +.+.|.+| +|+|+.++..+.+++++. +.+.+.+. .|.++++||+|+||+..+
T Consensus 81 g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g 137 (156)
T TIGR03585 81 G-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREG 137 (156)
T ss_pred E-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEee
Confidence 4 45899999 999999999999999864 88888775 599999999999999755
No 47
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=90.91 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=94.6
Q ss_pred EEeecCcCChHHHHHHHHHcCCCCC-CHHHHHHHhccCCceEEEEEccCCceEEEEEEe-----cCCceEEEEeEEEECc
Q 048638 9 LRRTISDLDINHLNSVFVAVGFPRR-DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT-----GDDVFNAIVWDVVVDP 82 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~-----~~~~~~~~i~~~~v~~ 82 (147)
.||.++++|+-.++.. +..+.|.. ....+.......+...||+.|.+|+|||++... .+.+..+.|..++|..
T Consensus 3 ~iR~ar~~DL~~mQ~~-Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 3 NIRRARPDDLLEMQHC-NLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred ccccCCHHHHHHhhhc-ccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 4778888887777665 44444443 233344445566788999998999999999876 1234478999999999
Q ss_pred CccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcch-hcCCeeCC
Q 048638 83 SYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYR-PLGFVADP 130 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~-k~Gf~~~~ 130 (147)
.||+.|||+.||......+.+. +.+.+.+. +|.+|..+|+ .+||++.+
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~e 134 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCE 134 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEee
Confidence 9999999999999988888775 77888886 5999999998 89999865
No 48
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=90.22 Aligned_cols=96 Identities=24% Similarity=0.354 Sum_probs=78.6
Q ss_pred HHHhccCCceEEEEEccCCceEEEEEEe---cCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee---
Q 048638 39 RVALENTSSLLWIEYEKTRRPVAFARAT---GDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY--- 112 (147)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~ivG~~~~~---~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~--- 112 (147)
...+.+....++++++..+++|||..+. ..+....+++.+-|.+.|||+|||+.|++.+...+.....+.|.++
T Consensus 84 ~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~ 163 (202)
T KOG2488|consen 84 AKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFS 163 (202)
T ss_pred HHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeec
Confidence 3445555666777774455899999987 4556689999999999999999999999999999998887877776
Q ss_pred cCcchhhcchhcCCeeCCCCce
Q 048638 113 SEPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 113 ~n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
.|.+|..||.++||.+.+....
T Consensus 164 ~N~~al~Fy~~~gf~~~~~sp~ 185 (202)
T KOG2488|consen 164 ENIRALGFYHRLGFVVDEESPC 185 (202)
T ss_pred ccchhHHHHHHcCcccCCCCCc
Confidence 5999999999999998665443
No 49
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.60 E-value=3.1e-14 Score=87.85 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=84.0
Q ss_pred EEEeecCcCChHHHHHHHHHc---C---CCCC--CHHHHHHHhcc-------CCceEEEEEccC-CceEEEEEEec--CC
Q 048638 8 ILRRTISDLDINHLNSVFVAV---G---FPRR--DPDKIRVALEN-------TSSLLWIEYEKT-RRPVAFARATG--DD 69 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~---~---~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~-~~ivG~~~~~~--~~ 69 (147)
..+|+++++|++.+.+++.+. . +... +.+.....+.. .....|++.+.+ +++||++.+.. ..
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 368999999999999998532 1 2222 44443333321 113445555333 57999999952 23
Q ss_pred ceEEEEeEEEECcCccCCChHHHHHHHHHHHHH-HcCcceEEee---cCcchhhcchhcCCe
Q 048638 70 VFNAIVWDVVVDPSYQGMGLGKAVMERLIDELL-EKGVCNIALY---SEPRVLGFYRPLGFV 127 (147)
Q Consensus 70 ~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~-~~~~~~i~~~---~n~~~~~~y~k~Gf~ 127 (147)
...+.++ +.|.|+|||+|+|+.++..+++++. ..++..+.+. .|.+|.++++|+||+
T Consensus 82 ~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 4466666 8899999999999999999999996 4599988876 499999999999996
No 50
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.57 E-value=2.7e-14 Score=94.09 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=75.3
Q ss_pred HHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee--cCc
Q 048638 38 IRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY--SEP 115 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~--~n~ 115 (147)
............+... .+|+||+.+......+..+.|..++++|+|||||+|+.|+..+.+.....|...+... .|+
T Consensus 168 ~~~~~a~g~~~~~f~~-~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~ 246 (268)
T COG3393 168 VAVLNALGRSRTYFLE-GDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNP 246 (268)
T ss_pred HHHHHHhhceeEEEEc-cCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCH
Confidence 3334444434444443 5669999999998888899999999999999999999999999999999987665554 699
Q ss_pred chhhcchhcCCeeCC
Q 048638 116 RVLGFYRPLGFVADP 130 (147)
Q Consensus 116 ~~~~~y~k~Gf~~~~ 130 (147)
.|.+.|+|.||+..+
T Consensus 247 ~A~~iY~riGF~~~g 261 (268)
T COG3393 247 VARRIYQRIGFREIG 261 (268)
T ss_pred HHHHHHHHhCCeecc
Confidence 999999999999654
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.55 E-value=2e-14 Score=90.03 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=56.7
Q ss_pred ceEEEEEccCCceEEEEEEec----------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcc
Q 048638 47 SLLWIEYEKTRRPVAFARATG----------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPR 116 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~----------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~ 116 (147)
..++++. .++++||++.+.. .....++|..++|+|+|||||+|++|++.+.+ .+.. +.+.++..
T Consensus 45 ~~~~~~~-~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~ 118 (156)
T PRK13688 45 SPFYGIY-YGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNK 118 (156)
T ss_pred CCEEEEE-ECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccc
Confidence 3445555 7889999887642 12345789999999999999999999986543 3443 33334446
Q ss_pred hhhcchhcCCeeCC
Q 048638 117 VLGFYRPLGFVADP 130 (147)
Q Consensus 117 ~~~~y~k~Gf~~~~ 130 (147)
+.+||+|+||+..+
T Consensus 119 a~~FY~k~GF~~~~ 132 (156)
T PRK13688 119 SKDFWLKLGFTPVE 132 (156)
T ss_pred hHHHHHhCCCEEeE
Confidence 78999999998754
No 52
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.52 E-value=1.5e-13 Score=95.46 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=68.8
Q ss_pred ceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 47 SLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
...+++. ++|++||++++... .+..++|+|+|||+|+|+.|+.++++.+++.|...+.+.+.+...+||+++||
T Consensus 31 d~~vv~~-~~~~lVg~g~l~g~-----~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~klGF 104 (332)
T TIGR00124 31 EIFIAVY-EDEEIIGCGGIAGN-----VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEYCGF 104 (332)
T ss_pred CEEEEEE-ECCEEEEEEEEecC-----EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHcCC
Confidence 3455555 78999999998632 37899999999999999999999999999999999999987777899999999
Q ss_pred eeCCCC
Q 048638 127 VADPGG 132 (147)
Q Consensus 127 ~~~~~~ 132 (147)
.+....
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 985543
No 53
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.51 E-value=2.4e-13 Score=76.94 Aligned_cols=69 Identities=28% Similarity=0.354 Sum_probs=52.8
Q ss_pred CceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe-e-cCcchhhcchhcCCeeC
Q 048638 57 RRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL-Y-SEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 57 ~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~-~-~n~~~~~~y~k~Gf~~~ 129 (147)
+++++++...+. +.|..+.|+|+|||+|+|+.++..+.+.+.+.|...... . .|.+|+++|+|+||+..
T Consensus 10 ~~l~~~~~~~~~----g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~~~ 80 (86)
T PF08445_consen 10 VALVAWIIRSDD----GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEKLGFREI 80 (86)
T ss_dssp EEEEEEEEESCT----CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-EEE
T ss_pred cceeeEeeeCCC----cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCEEE
Confidence 456665554433 458999999999999999999999999999988665332 2 59999999999999964
No 54
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=82.90 Aligned_cols=84 Identities=23% Similarity=0.337 Sum_probs=70.6
Q ss_pred ceEEEEEccCCceEEEEEEecCCce--EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC-cceEEeecCcchhhcchh
Q 048638 47 SLLWIEYEKTRRPVAFARATGDDVF--NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG-VCNIALYSEPRVLGFYRP 123 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~~~~~--~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~~n~~~~~~y~k 123 (147)
...+.+++.+|++++++++.+.... ...|++++|+|++||+|+|.+||..+++.+.+.. -+.+.+.+....+.||.+
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~ 128 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS 128 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH
Confidence 3445566569999999999854433 2569999999999999999999999999999884 567889998999999999
Q ss_pred cCCeeCC
Q 048638 124 LGFVADP 130 (147)
Q Consensus 124 ~Gf~~~~ 130 (147)
+||+...
T Consensus 129 ~GFv~~~ 135 (155)
T COG2153 129 FGFVRVG 135 (155)
T ss_pred hCcEEcC
Confidence 9999843
No 55
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.50 E-value=7.1e-13 Score=85.04 Aligned_cols=106 Identities=22% Similarity=0.416 Sum_probs=76.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCC--ceEEEEEEecCC-----------------------------
Q 048638 21 LNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTR--RPVAFARATGDD----------------------------- 69 (147)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ivG~~~~~~~~----------------------------- 69 (147)
+..++..+.+ ..+++++...++.+....|++. ..+ +++|.+.+..++
T Consensus 2 ~f~Llv~AHY-rnsPnDL~~LlDaP~h~l~~l~-~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~ 79 (196)
T PF13718_consen 2 LFGLLVSAHY-RNSPNDLQLLLDAPNHRLFVLL-QPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQH 79 (196)
T ss_dssp HHHHHHHCSS-SB-HHHHHHHHH-TTEEEEEEE--SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHH
T ss_pred eeeeeehhhc-CCCHHHHHHHhcCCcceeehhc-cCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 4566677776 4678889999999988888887 667 999998875111
Q ss_pred --------ceEEEEeEEEECcCccCCChHHHHHHHHHHHH-------------------------HHcCcceEEee--cC
Q 048638 70 --------VFNAIVWDVVVDPSYQGMGLGKAVMERLIDEL-------------------------LEKGVCNIALY--SE 114 (147)
Q Consensus 70 --------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~-------------------------~~~~~~~i~~~--~n 114 (147)
-..+.|.+|+|+|++|++|+|+++++.+.+++ +..++..+... .+
T Consensus 80 ~~~~~f~~l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t 159 (196)
T PF13718_consen 80 FGDPEFAQLSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGAT 159 (196)
T ss_dssp SS-TTGGGSEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--
T ss_pred hCCHHHHhhcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCC
Confidence 01788999999999999999999999999999 45577766664 47
Q ss_pred cchhhcchhcCCee
Q 048638 115 PRVLGFYRPLGFVA 128 (147)
Q Consensus 115 ~~~~~~y~k~Gf~~ 128 (147)
+...+||.|+||.+
T Consensus 160 ~~Ll~FW~k~gf~p 173 (196)
T PF13718_consen 160 PELLKFWQKNGFVP 173 (196)
T ss_dssp HHHHHHHHCTT-EE
T ss_pred HHHHHHHHHCCcEE
Confidence 88999999999997
No 56
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=87.06 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=90.8
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCc----------eEEEEe
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDV----------FNAIVW 76 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~----------~~~~i~ 76 (147)
..-++..++.++..+..+ ....+|......+.........+.-+|. .++..+|...+..... ...+|.
T Consensus 16 ~~~l~~it~~nl~~~~~l-~~~~fP~~y~~kfy~~~~~~~~~~~~A~-~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~ 93 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQL-NEDIFPISYVDKFYPDVLSNGDLTQLAY-YNEIAVGAVACKLIKFVQNAKRLFGNRVIYIL 93 (187)
T ss_pred ceeeccCCcchHHHHHHH-hccccCcchHHHHHHHHHhcCCHHHhhh-hccccccceeeeehhhhhhhhhhhccceeEEE
Confidence 356788999999999988 6666676644444444444434434444 5666666666552111 138899
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcC-cceEEee---cCcchhhcchhcCCeeCC
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKG-VCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
.++|.|+||.+|||+.|++.+.+++.... ++.+++. +|..++.||++.||+++.
T Consensus 94 ~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~ 151 (187)
T KOG3138|consen 94 SLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVE 151 (187)
T ss_pred eecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEee
Confidence 99999999999999999999999999887 6777776 599999999999999755
No 57
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.47 E-value=6.5e-13 Score=82.20 Aligned_cols=109 Identities=20% Similarity=0.325 Sum_probs=80.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHhccCC--ceEEEEE-ccCCceEEEEEEe--cCCceEEEEeEEEECcCccCCChHHH
Q 048638 18 INHLNSVFVAVGFPRRDPDKIRVALENTS--SLLWIEY-EKTRRPVAFARAT--GDDVFNAIVWDVVVDPSYQGMGLGKA 92 (147)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ivG~~~~~--~~~~~~~~i~~~~v~~~~rg~Gig~~ 92 (147)
+++..+| ....|+..........-+.-+ ..+++.. +...++||.+.+. .......++..++|+.+.||+|+|+.
T Consensus 25 lk~~~~L-IN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~ 103 (225)
T KOG3397|consen 25 LKESMTL-INSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKF 103 (225)
T ss_pred HHHHHHH-HhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHH
Confidence 3444555 455888765554444333222 2233333 2456899999988 34445788999999999999999999
Q ss_pred HHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 93 VMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
||+.++.+++..|++.+++++. .-..||+++||+.
T Consensus 104 lMk~~E~~~R~~gf~~~yLsT~-DQ~~FYe~lGYe~ 138 (225)
T KOG3397|consen 104 LMKSTEKWMREKGFNEAYLSTD-DQCRFYESLGYEK 138 (225)
T ss_pred HHHHHHHHHHHhhhhheeeecc-cchhhhhhhcccc
Confidence 9999999999999999999873 3478999999996
No 58
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.44 E-value=3.3e-13 Score=82.13 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=88.0
Q ss_pred EEEeecCcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEe---cCCceEEEEeEEEECcCc
Q 048638 8 ILRRTISDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARAT---GDDVFNAIVWDVVVDPSY 84 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~---~~~~~~~~i~~~~v~~~~ 84 (147)
+.+|+...+|+-.+..+--+.--...........+..-+..+.++...++++.|++... ....+++++..+.|.|+|
T Consensus 2 tt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~ 81 (173)
T KOG3234|consen 2 TTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDY 81 (173)
T ss_pred CccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhH
Confidence 34667777666665555221111112334455566666677777776788999999876 334557889999999999
Q ss_pred cCCChHHHHHHHHHHHHHHcCcceEEee---cCcchhhcchhcCCee
Q 048638 85 QGMGLGKAVMERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 85 rg~Gig~~l~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~ 128 (147)
|+.|+|+.||..+.+.....+.-.+.+. .|..|+.+|+++||.+
T Consensus 82 Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~ 128 (173)
T KOG3234|consen 82 RRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSV 128 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceE
Confidence 9999999999999999987755554443 6999999999999986
No 59
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.33 E-value=1.5e-11 Score=90.03 Aligned_cols=84 Identities=27% Similarity=0.383 Sum_probs=67.5
Q ss_pred eEEEEEc--cCCceEEEEEEecCCc--------eEEEEeEEEE-----------CcCccCCChHHHHHHHHHHHHHHcCc
Q 048638 48 LLWIEYE--KTRRPVAFARATGDDV--------FNAIVWDVVV-----------DPSYQGMGLGKAVMERLIDELLEKGV 106 (147)
Q Consensus 48 ~~~~~~~--~~~~ivG~~~~~~~~~--------~~~~i~~~~v-----------~~~~rg~Gig~~l~~~~~~~~~~~~~ 106 (147)
..|..++ .++.+||++++..... ..+.|..+.| .|+|||+|+|+.||+.+++.+++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 4555553 2468999999984332 2455666554 48999999999999999999999999
Q ss_pred ceEEeecCcchhhcchhcCCeeCCC
Q 048638 107 CNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 107 ~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
+.+.+.+|..+++||+|+||+..+.
T Consensus 492 ~~i~v~s~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 492 EKILVISGIGVREYYRKLGYELDGP 516 (522)
T ss_pred CEEEEeeCchHHHHHHHCCCEEEcc
Confidence 9999989999999999999997553
No 60
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.28 E-value=7e-11 Score=73.35 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=65.0
Q ss_pred EEEEEccCCceEEEEEEecCCc-----eEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeec---Ccchhhc
Q 048638 49 LWIEYEKTRRPVAFARATGDDV-----FNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYS---EPRVLGF 120 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~~~~~-----~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~---n~~~~~~ 120 (147)
.+.+.+.++++||++.+...-+ ..++|+ ..|.|+.||||+|+++++.+.+.|+..|++.|.+++ |.+|.+.
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkv 148 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKV 148 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHH
Confidence 4555546899999999873211 134455 789999999999999999999999999999988874 8999999
Q ss_pred chhcCCee
Q 048638 121 YRPLGFVA 128 (147)
Q Consensus 121 y~k~Gf~~ 128 (147)
-+++|=..
T Consensus 149 I~~NGGil 156 (174)
T COG3981 149 IEANGGIL 156 (174)
T ss_pred HHhcCCEE
Confidence 99999765
No 61
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=99.27 E-value=4.6e-11 Score=70.94 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=67.3
Q ss_pred cCcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHH
Q 048638 13 ISDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKA 92 (147)
Q Consensus 13 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ 92 (147)
.++.|..++.++ ||..+++.+...++.. ...|.+. -|++++|.+.+...+. .+.+.+++|++--|++|+|..
T Consensus 10 ls~Qd~iDL~KI-----wp~~~~~~l~~~l~~~-~~l~aAr-FNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~y 81 (128)
T PF12568_consen 10 LSEQDRIDLAKI-----WPQQDPEQLEQWLDEG-HRLFAAR-FNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLY 81 (128)
T ss_dssp --HHHHHHHHHH------TTS----------SS-EEEEEEE-ETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHH
T ss_pred CCHHHHHHHHHh-----CCCCCHHHHHHHhccC-CeEEEEE-echheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHH
Confidence 444555556666 4777777787777543 4455564 7999999999997665 688999999999999999999
Q ss_pred HHHHHHHHHHHcCcceEEeec-------CcchhhcchhcCCeeCCC
Q 048638 93 VMERLIDELLEKGVCNIALYS-------EPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~~-------n~~~~~~y~k~Gf~~~~~ 131 (147)
|++.+.+.+. +++...+.. ...+..|...+||....+
T Consensus 82 Llee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~~ 125 (128)
T PF12568_consen 82 LLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQSD 125 (128)
T ss_dssp HHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-SS
T ss_pred HHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCccccCC
Confidence 9999999984 444444431 245568999999986554
No 62
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=99.26 E-value=7.2e-11 Score=88.72 Aligned_cols=109 Identities=22% Similarity=0.386 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCc----------------------------
Q 048638 19 NHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDV---------------------------- 70 (147)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~---------------------------- 70 (147)
..+..++..+.+ ..+++.+...++.+....+++...++++|+.+.+..++.
T Consensus 443 r~~~gllV~AHY-RnsP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~ 521 (758)
T COG1444 443 RQVYGLLVSAHY-RNSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHH 521 (758)
T ss_pred HHHHhHHhhhhc-cCCHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhh
Confidence 334445555565 357788888888888877877745558888877651111
Q ss_pred --------eEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee--cCcchhhcchhcCCeeC
Q 048638 71 --------FNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY--SEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 71 --------~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~--~n~~~~~~y~k~Gf~~~ 129 (147)
..+.|.+|+|+|++|++|||++|++.+.++++ +++.-+... .++...+||.|+||.++
T Consensus 522 ~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pV 589 (758)
T COG1444 522 RDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPV 589 (758)
T ss_pred cchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEE
Confidence 06889999999999999999999999999997 455655554 58999999999999983
No 63
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.23 E-value=5.8e-11 Score=79.95 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=63.8
Q ss_pred HHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchh
Q 048638 39 RVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVL 118 (147)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~ 118 (147)
+.++.+ ++.+++. ++|++|+.|...........|. |.++|+|||||+|+.+...++.+|.++|....+-..|.++.
T Consensus 159 e~Fl~~--G~Gf~i~-~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~ 234 (265)
T PF12746_consen 159 EDFLKN--GFGFCIL-HDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASI 234 (265)
T ss_dssp HHHHHH----EEEEE-ETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHH
T ss_pred HHHHhc--CcEEEEE-ECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHH
Confidence 334444 3556666 7899988776553333345554 88999999999999999999999999998887777899999
Q ss_pred hcchhcCCeeCC
Q 048638 119 GFYRPLGFVADP 130 (147)
Q Consensus 119 ~~y~k~Gf~~~~ 130 (147)
++-+|+||+...
T Consensus 235 ~lA~kLGf~~~~ 246 (265)
T PF12746_consen 235 ALAEKLGFHFDF 246 (265)
T ss_dssp HHHHHCT--EEE
T ss_pred HHHHHcCCcccc
Confidence 999999999744
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.22 E-value=1.6e-10 Score=60.96 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=50.5
Q ss_pred cCCceEEEEEEecCC--ceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe
Q 048638 55 KTRRPVAFARATGDD--VFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL 111 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~ 111 (147)
.+++++|++.+.+.. ....++..++|+|+|||+|+|+.++..+.+++.+.+.+.+.+
T Consensus 6 ~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 6 DDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred cCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 678999999998654 457889999999999999999999999999999988887765
No 65
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.8e-10 Score=72.95 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=61.6
Q ss_pred CceEEEEEEecCC----ceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCee
Q 048638 57 RRPVAFARATGDD----VFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 57 ~~ivG~~~~~~~~----~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~ 128 (147)
+++||.+.+.... .....++ +.+.|+|||+|+|+.++..++++++.. +.+++.+. .|.+|+++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIG-YWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEE-EEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 5899999988433 3344444 667999999999999999999999985 88888876 4999999999999997
Q ss_pred CCC
Q 048638 129 DPG 131 (147)
Q Consensus 129 ~~~ 131 (147)
.+.
T Consensus 156 eg~ 158 (187)
T COG1670 156 EGE 158 (187)
T ss_pred hhh
Confidence 554
No 66
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.18 E-value=2.6e-11 Score=73.74 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=87.4
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCCCCHHH---HHHHhccCCceEEEEEc--------cCCceEEEEEEe---------
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPRRDPDK---IRVALENTSSLLWIEYE--------KTRRPVAFARAT--------- 66 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~ivG~~~~~--------- 66 (147)
...+||..++|.+....| ...+||...... ....+-+-+..+...++ ..+.+||++.-.
T Consensus 11 ~~~irp~i~e~~q~~~~L-ea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~lt~ 89 (190)
T KOG4144|consen 11 APRIRPGIPESCQRRHTL-EASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERLTQ 89 (190)
T ss_pred cccCCCCChHHHHHHhcc-ccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhhhH
Confidence 346888888888888888 777887653333 33333333333222211 257788887643
Q ss_pred ------cCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC-cceEEeecCcchhhcchhcCCeeCCC
Q 048638 67 ------GDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG-VCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 67 ------~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
..+.....|..++|+|+||.||+|+.|+..-+...-++- ..++.+.+..+.++||+++||+.++.
T Consensus 90 ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 90 ESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred HHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeecc
Confidence 122235889999999999999999999998777776653 45677888899999999999998664
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.09 E-value=2.4e-09 Score=59.36 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=46.4
Q ss_pred cCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEE
Q 048638 55 KTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
.+|+.+|.+.+... .....+....|.|++||||+|+.|++.+.++++++|.+.+-
T Consensus 6 ~~g~~~a~l~Y~~~-~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 6 DDGEEIAELTYRED-GGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp SSTTEEEEEEEEES-SSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ECCEEEEEEEEEeC-CCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 56889999999764 44788999999999999999999999999999999865543
No 68
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.08 E-value=5.1e-10 Score=62.60 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=65.4
Q ss_pred EccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEE--eecCcchhhcchhcCCeeCC
Q 048638 53 YEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIA--LYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 53 ~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~--~~~n~~~~~~y~k~Gf~~~~ 130 (147)
.+.+|.+|.++..... +++...++.|+|||||+.+.++....+.+.+.|+..-. ...|..++++.+++||...+
T Consensus 4 lgpeG~PVSW~lmdqt----ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 4 LGPEGNPVSWSLMDQT----GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred cCCCCCEeEEEEeccc----ccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCeecC
Confidence 3578999999988755 44788899999999999999999999999999977533 23699999999999999877
Q ss_pred CCc
Q 048638 131 GGI 133 (147)
Q Consensus 131 ~~~ 133 (147)
++-
T Consensus 80 c~w 82 (89)
T PF08444_consen 80 CGW 82 (89)
T ss_pred Ccc
Confidence 653
No 69
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=60.17 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe
Q 048638 45 TSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL 111 (147)
Q Consensus 45 ~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~ 111 (147)
.....+++. .+|..+|.+..+..++....|....|.+++||||+|+.|++.+++.+++.|.+.+=+
T Consensus 13 ~~~~~y~~~-~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 13 GENGRYVLT-DEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred cCceEEEEe-cCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 344455554 889999999999888778999999999999999999999999999999998755433
No 70
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=69.93 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=64.6
Q ss_pred EEEEEccCCceEEEEEEec-------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcc
Q 048638 49 LWIEYEKTRRPVAFARATG-------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFY 121 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~~-------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y 121 (147)
.++.. .+.++++.+...+ ..-..+.|..+++.|+|||+|..++|+.+..+...++|.....++ +.+.+||
T Consensus 41 ~~vi~-~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~--P~s~~iY 117 (389)
T COG4552 41 SYVIY-MNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH--PFSGGIY 117 (389)
T ss_pred ceEEe-ehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec--cCchhhH
Confidence 35554 7788888776542 222367899999999999999999999999999999999988887 6678999
Q ss_pred hhcCCeeCC
Q 048638 122 RPLGFVADP 130 (147)
Q Consensus 122 ~k~Gf~~~~ 130 (147)
+|+||..-.
T Consensus 118 rKfGye~as 126 (389)
T COG4552 118 RKFGYEYAS 126 (389)
T ss_pred hhccccccc
Confidence 999999743
No 71
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.83 E-value=3e-08 Score=58.95 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=84.4
Q ss_pred EeecCcCChHHHHHHHHHcC--CCCCCHHHHHHHhccCCceEEEEEccCCceEEEEE---------------EecCCceE
Q 048638 10 RRTISDLDINHLNSVFVAVG--FPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFAR---------------ATGDDVFN 72 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~---------------~~~~~~~~ 72 (147)
++.....|..++..+-+..+ .++.+.+.+...+... |++. .+|.+-|++. +....+..
T Consensus 10 ~~D~~apd~aavLaLNNeha~elswLe~erL~~l~~eA----F~Ar-R~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F 84 (167)
T COG3818 10 IRDVRAPDLAAVLALNNEHALELSWLELERLYRLYKEA----FVAR-RDGNLAAFLVTFDSSARYDSPNFLWFRERYENF 84 (167)
T ss_pred hhhhcCCchhhHHhccchhhhhccccCHHHHHHHHHHH----HHHh-hccchhhheeeccccccCCCCceeehhhhCCce
Confidence 44556668888888855432 2333445454444332 3343 4444444433 22333447
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee-----cCcchhhcchhcCCeeCCCCce
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY-----SEPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~-----~n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
.++.+++|...-||+|+|++|.+.+.+++...|...+++. .|+++..|-..+||.+++....
T Consensus 85 ~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~i 151 (167)
T COG3818 85 FYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATI 151 (167)
T ss_pred EEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEE
Confidence 8999999999999999999999999999999999988876 3789999999999998775443
No 72
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.74 E-value=1.9e-07 Score=62.99 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=73.5
Q ss_pred EEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 49 LWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
...+..+++++|++.++... .|-.++|+|.+||-|++-.|+.+++..+-+.|...+++.+.+....||+.+||..
T Consensus 38 ~v~~~~~~~~iiacGsiaGn-----vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~ 112 (352)
T COG3053 38 FVAIYRDNEEIIACGSIAGN-----VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSE 112 (352)
T ss_pred EEEEEcCCCcEEEecccccc-----eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceE
Confidence 34445466999999988743 2667999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeeEEeccc
Q 048638 129 DPGGIRGMVYSRKS 142 (147)
Q Consensus 129 ~~~~~~~~~~~~~~ 142 (147)
.......+++...+
T Consensus 113 i~~~~~~ivlmENs 126 (352)
T COG3053 113 IASAENVIVLMENS 126 (352)
T ss_pred eeccCceEEEeecC
Confidence 66555555555433
No 73
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.69 E-value=1.7e-06 Score=55.24 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=80.4
Q ss_pred cceEEEeecCcCChHHHHHHHHHcCCC--CCCHHHHHHHhccCCceEEEEEccCCceEEEEEEe---c----CCceEEEE
Q 048638 5 RGFILRRTISDLDINHLNSVFVAVGFP--RRDPDKIRVALENTSSLLWIEYEKTRRPVAFARAT---G----DDVFNAIV 75 (147)
Q Consensus 5 ~~~~~ir~~~~~d~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~---~----~~~~~~~i 75 (147)
.++.++.....+-++++..+.....|. ..+...|...+...-.+.++......++|+.+.+. + .......+
T Consensus 2 ~dvdvv~NP~~e~~d~fmk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~ 81 (181)
T PF06852_consen 2 NDVDVVINPPQEYFDQFMKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFI 81 (181)
T ss_pred CceEEEeCCCHHHHHHHHHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEE
Confidence 456777777888888888886443332 23445566556553333344332446788887764 1 12347889
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchh-cCCee
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRP-LGFVA 128 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k-~Gf~~ 128 (147)
+...++|+|||+|+++.+-+.+.+..+.. .....+..+..+.++|.+ +||..
T Consensus 82 G~~w~~p~yRg~~~~kl~~~~~~~~~~~~-~~N~~~~~~~~~~~~w~k~~G~~~ 134 (181)
T PF06852_consen 82 GFFWIDPEYRGKGIMKLQDDICMDELDSV-DDNSVAQGNVKMSNFWHKMFGFDD 134 (181)
T ss_pred eeeeeCCcccCcchHHHHHHHHHHHhccC-CCceeeecCHHHHHHHHHHhCCCC
Confidence 99999999999999975555555555543 344556677888889864 89874
No 74
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.62 E-value=2.4e-06 Score=56.11 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCCCCCHHHHH-HHhccCCceEEEEEccCCceEEEEEEec---------------------CCceEEEEeEEEECcCccC
Q 048638 29 GFPRRDPDKIR-VALENTSSLLWIEYEKTRRPVAFARATG---------------------DDVFNAIVWDVVVDPSYQG 86 (147)
Q Consensus 29 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivG~~~~~~---------------------~~~~~~~i~~~~v~~~~rg 86 (147)
+|.....+..+ +.++.....++++.+.+|+++|++.+.+ ..+..+++.+++|+|+++.
T Consensus 34 gW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~ 113 (207)
T PRK13834 34 GWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAE 113 (207)
T ss_pred CCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccc
Confidence 66543322222 2345554555566656789999998751 1234899999999998642
Q ss_pred C---C----hHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCC
Q 048638 87 M---G----LGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGG 132 (147)
Q Consensus 87 ~---G----ig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~ 132 (147)
. + +...|+..+.+++...|++.++..+++...+++.++||....-|
T Consensus 114 ~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~~lG 166 (207)
T PRK13834 114 GRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQRLG 166 (207)
T ss_pred cccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeEECC
Confidence 2 2 56789999999999999999998888889999999999764433
No 75
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.54 E-value=1.4e-06 Score=56.10 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=68.3
Q ss_pred HhccCCceEEEEEccCCceEEEEEEec---------------------CCceEEEEeEEEECcCccC------CChHHHH
Q 048638 41 ALENTSSLLWIEYEKTRRPVAFARATG---------------------DDVFNAIVWDVVVDPSYQG------MGLGKAV 93 (147)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ivG~~~~~~---------------------~~~~~~~i~~~~v~~~~rg------~Gig~~l 93 (147)
.+++....++++. .+|+++|++.+.+ ..+..+++.+++|+++.++ .-+...|
T Consensus 39 qyD~~~~~ylv~~-~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L 117 (182)
T PF00765_consen 39 QYDDPDAVYLVAL-DDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMEL 117 (182)
T ss_dssp TTGCTT-EEEEEE-ETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHH
T ss_pred ecCCCCCeEEEEE-ECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHH
Confidence 4455555555665 5699999999862 2244899999999998543 2467899
Q ss_pred HHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCc
Q 048638 94 MERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGI 133 (147)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (147)
+..+.+++.+.|++.++..+.....+++++.||....-|.
T Consensus 118 ~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~lG~ 157 (182)
T PF00765_consen 118 LLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRRLGP 157 (182)
T ss_dssp HHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEESSE
T ss_pred HHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEECCC
Confidence 9999999999999999988889999999999998744433
No 76
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.53 E-value=2.4e-06 Score=57.43 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=82.7
Q ss_pred EEEeecCcCChHHHHHHHHH-----cCCCCCCH--HHHH-HHhccCCceEEEEEc-cCCceEEEEEEecC----------
Q 048638 8 ILRRTISDLDINHLNSVFVA-----VGFPRRDP--DKIR-VALENTSSLLWIEYE-KTRRPVAFARATGD---------- 68 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~-----~~~~~~~~--~~~~-~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~---------- 68 (147)
.+.-..++.+..++..+-.. .+|+.... +..+ +.++. ....+++.+ .+|++||++.+.+.
T Consensus 9 ~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~-~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p 87 (241)
T TIGR03694 9 EIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDA-HSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFP 87 (241)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCC-CCcEEEEEECCCCCEEEEEEEecccccccccccc
Confidence 33334444455666555443 36752211 1111 12333 344455543 35899999987632
Q ss_pred --------------------CceEEEEeEEEECcCccCC--------C--------------------hHHHHHHHHHHH
Q 048638 69 --------------------DVFNAIVWDVVVDPSYQGM--------G--------------------LGKAVMERLIDE 100 (147)
Q Consensus 69 --------------------~~~~~~i~~~~v~~~~rg~--------G--------------------ig~~l~~~~~~~ 100 (147)
.+..+++.+++|+|++|++ | +...|+..+.++
T Consensus 88 ~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 167 (241)
T TIGR03694 88 FEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIAL 167 (241)
T ss_pred HHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHH
Confidence 1247889999999999974 2 457799999999
Q ss_pred HHHcCcceEEeecCcchhhcchhcCCeeCCCC
Q 048638 101 LLEKGVCNIALYSEPRVLGFYRPLGFVADPGG 132 (147)
Q Consensus 101 ~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~ 132 (147)
+...|++.++..+.+...+++.+.|+....-|
T Consensus 168 a~~~Gi~~~~~v~~~~l~r~l~r~G~~~~~lG 199 (241)
T TIGR03694 168 SSANGITHWYAIMEPRLARLLSRFGIQFRQVG 199 (241)
T ss_pred HHHCCCcEEEEEeCHHHHHHHHHhCCceEEcC
Confidence 99999999998888899999999999764444
No 77
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.50 E-value=1.9e-06 Score=50.57 Aligned_cols=87 Identities=14% Similarity=0.221 Sum_probs=62.7
Q ss_pred HHHHhccCCceEEEEEccCCceEEEEEEec----CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcc-eEEee
Q 048638 38 IRVALENTSSLLWIEYEKTRRPVAFARATG----DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVC-NIALY 112 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~----~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~-~i~~~ 112 (147)
++.+...+....|+.. .+|.+||++.+-. ..+..+.+..+.+...|||+|+|++..+++..... |.. .+.+.
T Consensus 28 l~~~w~~~~~~~~~~~-~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~ 104 (143)
T COG5628 28 LETYWRDPVREAWLFR-IGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVR 104 (143)
T ss_pred hhhhhcCcccceeEEE-ECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEec
Confidence 4444444433345444 6899999998751 22224568889999999999999999999877654 433 45556
Q ss_pred cCcchhhcchhcCCe
Q 048638 113 SEPRVLGFYRPLGFV 127 (147)
Q Consensus 113 ~n~~~~~~y~k~Gf~ 127 (147)
.|.+|+.||++.-+.
T Consensus 105 EN~PA~~fwK~~~~t 119 (143)
T COG5628 105 ENTPARAFWKRVAET 119 (143)
T ss_pred cCChhHHHHHhhhcc
Confidence 799999999998765
No 78
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=7.2e-06 Score=50.10 Aligned_cols=124 Identities=10% Similarity=0.143 Sum_probs=80.6
Q ss_pred eEEEeecCcCChHHHHHHHHHcCC---------CCCCHHHHHHHhccC-CceEEEEEccC---------CceEEEEEEe-
Q 048638 7 FILRRTISDLDINHLNSVFVAVGF---------PRRDPDKIRVALENT-SSLLWIEYEKT---------RRPVAFARAT- 66 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~ivG~~~~~- 66 (147)
-.++-|.++.+.+.+++++..... +...+...+.....+ +...|++.+.+ +.+||=+.+.
T Consensus 13 kvILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFl 92 (185)
T KOG4135|consen 13 KVILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFL 92 (185)
T ss_pred eEEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEE
Confidence 356778999999999888764311 112333344444333 33344444211 2367766555
Q ss_pred ---cC------CceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcchhcCCeeCC
Q 048638 67 ---GD------DVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 67 ---~~------~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
++ ....+.+.-+.-.|.-||||+|+..+..++.++... +.....+. .|.+++++|+|++|....
T Consensus 93 t~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~ 169 (185)
T KOG4135|consen 93 TTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVF 169 (185)
T ss_pred ecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeee
Confidence 11 122566665666799999999999999999999876 55554443 599999999999998643
No 79
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=7e-06 Score=53.50 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=78.4
Q ss_pred cceEEEeecCcCChHHHHHHHHHcCCCCCCH----HHHHHHhccCCceEEEEEccCCceEEEEEEec---CCceEEEEeE
Q 048638 5 RGFILRRTISDLDINHLNSVFVAVGFPRRDP----DKIRVALENTSSLLWIEYEKTRRPVAFARATG---DDVFNAIVWD 77 (147)
Q Consensus 5 ~~~~~ir~~~~~d~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~---~~~~~~~i~~ 77 (147)
|++.+.|...+.+++++.++ +...|...+. ..-...+......++.++..+|++||..-.++ .+.-+.+-+.
T Consensus 1 m~vvvrrl~dp~el~~~~dV-~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~ 79 (266)
T COG3375 1 MKVVVRRLTDPAELDEAEDV-QASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHM 79 (266)
T ss_pred CceeEEecCCHHHHHHHHHH-HHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeee
Confidence 34566677777788888777 4445543321 22223455556777888866779999988775 2333566778
Q ss_pred EEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
.+|.|++++.|+|-+|-..-.+++.+.|+..+..+
T Consensus 80 ~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WT 114 (266)
T COG3375 80 LGVREEVKGSGLGVALKMKQRERALSMGYTLIAWT 114 (266)
T ss_pred hhccccccccchhhhhHHHHHHHHHhcCeeeEEEe
Confidence 99999999999999999999999999999988876
No 80
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.35 E-value=2.1e-05 Score=55.00 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=70.9
Q ss_pred eEEEeecCcCChHHHHHHHHHcCC--CC--CCHHHHHHHhcc--------------CCceEEEEEc-cCCceEEEEEEec
Q 048638 7 FILRRTISDLDINHLNSVFVAVGF--PR--RDPDKIRVALEN--------------TSSLLWIEYE-KTRRPVAFARATG 67 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~--~~--~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~ivG~~~~~~ 67 (147)
+.++||++.+|++++..+-...+. +. .+.+.+...++. +..+.||.+| .+|+++|++.+..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 468999999999999999776633 32 133333222211 2235677764 3589999998761
Q ss_pred ------------------------------------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc--Cc-ce
Q 048638 68 ------------------------------------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK--GV-CN 108 (147)
Q Consensus 68 ------------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~-~~ 108 (147)
+-....+++.+.++|+||+-|.|+.|-+.-.-.+... .+ +.
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~ 160 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADR 160 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SE
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchh
Confidence 1111567888999999999999999988777666554 22 34
Q ss_pred EEee-----cCcchhhcchhcCCe
Q 048638 109 IALY-----SEPRVLGFYRPLGFV 127 (147)
Q Consensus 109 i~~~-----~n~~~~~~y~k~Gf~ 127 (147)
+... ....--+||+.+|=.
T Consensus 161 viAElrG~~De~G~SPFWdalG~~ 184 (342)
T PF04958_consen 161 VIAELRGVSDEDGRSPFWDALGRH 184 (342)
T ss_dssp EEEE--B---TT---HHHHHTGGG
T ss_pred eeeeccCCcCCCCCCchHHHhhcc
Confidence 4443 234556788877744
No 81
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.33 E-value=1.6e-05 Score=51.36 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHH-----cCCCCCCHHHH-HHHhccCCceEEEEEccCCceEEEEEEe---------------------c
Q 048638 15 DLDINHLNSVFVA-----VGFPRRDPDKI-RVALENTSSLLWIEYEKTRRPVAFARAT---------------------G 67 (147)
Q Consensus 15 ~~d~~~l~~l~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivG~~~~~---------------------~ 67 (147)
+.-+++++.+-.+ .+|.......+ .+.+++.+..+.++.+.+|+|+|++.+- +
T Consensus 14 ~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P 93 (209)
T COG3916 14 PKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPP 93 (209)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCC
Confidence 3344455544332 26644322222 2345666666677767899999999875 2
Q ss_pred CCceEEEEeEEEECc--CccCC---C-hHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 68 DDVFNAIVWDVVVDP--SYQGM---G-LGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 68 ~~~~~~~i~~~~v~~--~~rg~---G-ig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
..+..++..+++|++ .-++. . ++..|+.-+++++...|++.|+..+.....+.+++.||....
T Consensus 94 ~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~r 162 (209)
T COG3916 94 SSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLTR 162 (209)
T ss_pred CCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEE
Confidence 334578999999987 33333 2 467899999999999999999999999999999999997633
No 82
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.28 E-value=1e-06 Score=51.73 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=37.9
Q ss_pred EEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
++|+|++||+|+|+.|++.+.++++..|.. .+..+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHhcCC
Confidence 999999999999999999999999987765 55666777777776
No 83
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.22 E-value=9.6e-05 Score=45.16 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=73.6
Q ss_pred eEEEeecCcCChHHHHHHHHHc-----C-C-CCCCHHHHHHHhcc----CCceEEEEEccCCceEEEEEEecCCceEEEE
Q 048638 7 FILRRTISDLDINHLNSVFVAV-----G-F-PRRDPDKIRVALEN----TSSLLWIEYEKTRRPVAFARATGDDVFNAIV 75 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~-----~-~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i 75 (147)
+.+.....++|++.+.+++... + . +....+.+...+.. +....+++. .+|++||+......+. ..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~g~~va~~~~~~~~~-~~~~ 97 (142)
T PF13480_consen 20 VRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLY-DGGEPVAFALGFRHGG-TLYY 97 (142)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEE-ECCEEEEEEEEEEECC-EEEE
Confidence 4444455777888888877532 1 2 12344555555443 233444454 7899999988775555 5667
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
...+++|+++..+.|..|+..+++++.+.|++.+-+.
T Consensus 98 ~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g 134 (142)
T PF13480_consen 98 WYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFG 134 (142)
T ss_pred EEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 7888999999999999999999999999998887765
No 84
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.21 E-value=2.1e-05 Score=54.94 Aligned_cols=121 Identities=12% Similarity=0.170 Sum_probs=77.8
Q ss_pred EEEeecCcCChHHHHHHHHHcC--CCC--CCHHHHHHHhc------------cCCceEEEEEc-cCCceEEEEEEec---
Q 048638 8 ILRRTISDLDINHLNSVFVAVG--FPR--RDPDKIRVALE------------NTSSLLWIEYE-KTRRPVAFARATG--- 67 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~~--~~~--~~~~~~~~~~~------------~~~~~~~~~~~-~~~~ivG~~~~~~--- 67 (147)
.++||++.+|++++.++-...+ ++. .+.+.+...++ ....+.||.+| +.|++||++.+..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 6899999999999999977653 222 13333333222 12345667664 3589999988751
Q ss_pred ---------------------------------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc--Cc-ceEEe
Q 048638 68 ---------------------------------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK--GV-CNIAL 111 (147)
Q Consensus 68 ---------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~-~~i~~ 111 (147)
+-....+++.+.++|+||+-|.|+.|-+.-.-.+... -+ +.+..
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viA 161 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVA 161 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhhe
Confidence 0011567888999999999999998887766555443 12 23333
Q ss_pred e-----cCcchhhcchhcCCee
Q 048638 112 Y-----SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 112 ~-----~n~~~~~~y~k~Gf~~ 128 (147)
. .....-+||..+|=..
T Consensus 162 EmRG~~De~G~SPFWd~lg~hF 183 (344)
T PRK10456 162 EMRGVIDEHGYSPFWQSLGKRF 183 (344)
T ss_pred eccCccCCCCCCccHHHhhccc
Confidence 2 2345567888877543
No 85
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=98.17 E-value=0.00016 Score=45.07 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=62.7
Q ss_pred CcCChHHHHHHHHHcCCC--------CCCHHHHHHHhccCCc---eEEEE-EccCCceEEEEEEec-------CCceEEE
Q 048638 14 SDLDINHLNSVFVAVGFP--------RRDPDKIRVALENTSS---LLWIE-YEKTRRPVAFARATG-------DDVFNAI 74 (147)
Q Consensus 14 ~~~d~~~l~~l~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ivG~~~~~~-------~~~~~~~ 74 (147)
.++++.++++++...-.. .-+.+.+...+..+.. ....+ ...++++|||++..+ ......+
T Consensus 33 d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~e 112 (162)
T PF01233_consen 33 DDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVE 112 (162)
T ss_dssp SHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeee
Confidence 344555566665543111 1256777767765422 23333 235789999998762 2334688
Q ss_pred EeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEE
Q 048638 75 VWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 75 i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
|..++|++.+|.++++.-|++++.+.+...|+....
T Consensus 113 INFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 113 INFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred EEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 999999999999999999999999999988866543
No 86
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=98.05 E-value=5.8e-05 Score=52.58 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=76.2
Q ss_pred EEeecCcCChHHHHHHHHHcC--CCC--CCHHHHHHHh-------------ccCCceEEEEEc-cCCceEEEEEEec---
Q 048638 9 LRRTISDLDINHLNSVFVAVG--FPR--RDPDKIRVAL-------------ENTSSLLWIEYE-KTRRPVAFARATG--- 67 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~--~~~--~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~ivG~~~~~~--- 67 (147)
++||++..|++++.++-...+ ++. .+.+.+...+ .....+.||.+| +.|+++|++.+..
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG 80 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAG 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 489999999999999976653 222 1222222221 122446677764 3589999988751
Q ss_pred ---------------------------------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc--Cc-ceEEe
Q 048638 68 ---------------------------------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK--GV-CNIAL 111 (147)
Q Consensus 68 ---------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~-~~i~~ 111 (147)
+-....+++.+.++|+||+-|.|+.|-+.-.-.+... -+ +.+..
T Consensus 81 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~viA 160 (336)
T TIGR03245 81 YGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSRIIV 160 (336)
T ss_pred CCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhee
Confidence 0111567888999999999999998887766555443 12 33443
Q ss_pred e-----cCcchhhcchhcCCee
Q 048638 112 Y-----SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 112 ~-----~n~~~~~~y~k~Gf~~ 128 (147)
. ....--+||+.+|=..
T Consensus 161 EmrG~~De~G~SPFWd~lg~hF 182 (336)
T TIGR03245 161 EIQGVQDDNGDSPFWDAIGRHF 182 (336)
T ss_pred eccCccCCCCCCccHHHhhccc
Confidence 3 2345567888877543
No 87
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=98.01 E-value=7.4e-05 Score=52.06 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=76.0
Q ss_pred EEeecCcCChHHHHHHHHHcC--CCC--CCHHHHHHH-------h-----ccCCceEEEEEc-cCCceEEEEEEec----
Q 048638 9 LRRTISDLDINHLNSVFVAVG--FPR--RDPDKIRVA-------L-----ENTSSLLWIEYE-KTRRPVAFARATG---- 67 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~--~~~--~~~~~~~~~-------~-----~~~~~~~~~~~~-~~~~ivG~~~~~~---- 67 (147)
++||++..|++++.++-...+ ++. .+.+.+... + .....+.||.+| +.|+++|++.+..
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~ 80 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGL 80 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 489999999999999976653 221 122222221 1 113345667664 3589999988751
Q ss_pred --------------------------------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc--Cc-ceEEee
Q 048638 68 --------------------------------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK--GV-CNIALY 112 (147)
Q Consensus 68 --------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~-~~i~~~ 112 (147)
+-....+++.+.++|+||+.|.|+.|-+.-.-.+... -+ +.+...
T Consensus 81 ~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (335)
T TIGR03243 81 DEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAE 160 (335)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhheee
Confidence 0111567888999999999999998887766555443 12 334432
Q ss_pred -----cCcchhhcchhcCCee
Q 048638 113 -----SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 113 -----~n~~~~~~y~k~Gf~~ 128 (147)
....--+||+.+|-..
T Consensus 161 mrG~~De~G~SPFWd~lg~hF 181 (335)
T TIGR03243 161 MRGVSDEQGRSPFWEALGRHF 181 (335)
T ss_pred ccCccCCCCCCccHHHhhccc
Confidence 2345567888887554
No 88
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.98 E-value=5.5e-05 Score=52.77 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=76.4
Q ss_pred EEeecCcCChHHHHHHHHHcC--CCC--CCHHHHHHHhc------------cCCceEEEEEc-cCCceEEEEEEec----
Q 048638 9 LRRTISDLDINHLNSVFVAVG--FPR--RDPDKIRVALE------------NTSSLLWIEYE-KTRRPVAFARATG---- 67 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~--~~~--~~~~~~~~~~~------------~~~~~~~~~~~-~~~~ivG~~~~~~---- 67 (147)
++||++..|++++.++-...+ ++. .+.+.+...++ ....+.||.+| +.|++||++.+..
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 80 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGL 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 489999999999999976653 222 13333333222 12346677764 3589999988750
Q ss_pred --------------------------------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc--Cc-ceEEee
Q 048638 68 --------------------------------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK--GV-CNIALY 112 (147)
Q Consensus 68 --------------------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~-~~i~~~ 112 (147)
+-....+++.+.++|+||+.|.|+.|-+.-.-.+... -+ +.+...
T Consensus 81 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (336)
T TIGR03244 81 EEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKIIAE 160 (336)
T ss_pred CCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhhhhh
Confidence 0111567888999999999999998877766555443 11 233332
Q ss_pred -----cCcchhhcchhcCCee
Q 048638 113 -----SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 113 -----~n~~~~~~y~k~Gf~~ 128 (147)
....--+||+.+|=..
T Consensus 161 mrG~~De~G~SPFWd~lg~hF 181 (336)
T TIGR03244 161 MRGVSDEQGRSPFWNALGRHF 181 (336)
T ss_pred hcCccCCCCCCchHHHhhccc
Confidence 2344566888877543
No 89
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.70 E-value=0.00024 Score=42.04 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=38.7
Q ss_pred ceEEEEEcc----CCceEEEEEEe--------cCCc-----eEEEEeEEEECcCccCCChHHHHHHHHHHHH
Q 048638 47 SLLWIEYEK----TRRPVAFARAT--------GDDV-----FNAIVWDVVVDPSYQGMGLGKAVMERLIDEL 101 (147)
Q Consensus 47 ~~~~~~~~~----~~~ivG~~~~~--------~~~~-----~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 101 (147)
...++..+. .+.++|++.+. ..+. ....+.+++|+++.|++|+|+.|.+.+...-
T Consensus 4 ~~~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e 75 (120)
T PF05301_consen 4 QVLYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE 75 (120)
T ss_pred eEEEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc
Confidence 345555532 25689998764 1111 1236789999999999999999999988764
No 90
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.61 E-value=7.9e-05 Score=40.02 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=27.0
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHH
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELL 102 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 102 (147)
..-|..+.|+|.+|++||++.|++.+.+..-
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~i 35 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENFI 35 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhcc
Confidence 3457889999999999999999999988753
No 91
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.60 E-value=8.5e-05 Score=53.55 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=45.6
Q ss_pred CcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 81 DPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 81 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
...||-+|+|+.||+.+.+.|++.+...|.+.+-..++.+|.|+||+..+
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccC
Confidence 36799999999999999999999998899888889999999999999655
No 92
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=97.56 E-value=0.00082 Score=43.17 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=37.6
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.++|+-+-.........+.-|.|.|.||++|+|+.|++..-+-++..+
T Consensus 66 h~vGyFSKEk~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 588988866444334568899999999999999999999998888765
No 93
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.50 E-value=0.0078 Score=42.49 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=78.5
Q ss_pred cCChHHHHHHHHHc----CCCCCCHHHHHHHhccC--CceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCC
Q 048638 15 DLDINHLNSVFVAV----GFPRRDPDKIRVALENT--SSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMG 88 (147)
Q Consensus 15 ~~d~~~l~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~G 88 (147)
.+|++.+.+++... +.+..+.+.+...++.- ....+++.+.+|++||.+.+...+.. .+....+..++++..+
T Consensus 157 ~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~~-~~~~~~g~~~~~~~~~ 235 (330)
T TIGR03019 157 DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRDE-VLPYYAGGLREARDVA 235 (330)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCCE-EEEEeccChHHHHhhC
Confidence 35688888887643 55555666666655432 23344454368899988776644443 2223456789999999
Q ss_pred hHHHHHHHHHHHHHHcCcceEEeec---CcchhhcchhcCCeeCC
Q 048638 89 LGKAVMERLIDELLEKGVCNIALYS---EPRVLGFYRPLGFVADP 130 (147)
Q Consensus 89 ig~~l~~~~~~~~~~~~~~~i~~~~---n~~~~~~y~k~Gf~~~~ 130 (147)
-+..|+-.+++++.++|++..-+.. +....+|=++.||++.+
T Consensus 236 ~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~ 280 (330)
T TIGR03019 236 ANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQP 280 (330)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeecc
Confidence 9999999999999999988877753 23445555678999755
No 94
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.47 E-value=0.00083 Score=49.01 Aligned_cols=121 Identities=15% Similarity=0.239 Sum_probs=89.3
Q ss_pred EEeecCcCChHHHHHHHHHcCC-----CCCCHHHHHHHhccCCceEEEEEcc----CCceEEEEEEecCCceEEEEeEEE
Q 048638 9 LRRTISDLDINHLNSVFVAVGF-----PRRDPDKIRVALENTSSLLWIEYEK----TRRPVAFARATGDDVFNAIVWDVV 79 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ivG~~~~~~~~~~~~~i~~~~ 79 (147)
.+++.+..+++.+.+|.+.... ..-..+.+.+...+.....|-+--. ++-+||.+.+...+ ..|.|..+.
T Consensus 415 ~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~-~~w~IDt~l 493 (574)
T COG3882 415 TVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKE-SEWFIDTFL 493 (574)
T ss_pred EEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecC-CeEEhHHHH
Confidence 4677888888888888665421 1235566666444444433322211 34589998888665 478899998
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEee-----cCcchhhcchhcCCeeCC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALY-----SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~-----~n~~~~~~y~k~Gf~~~~ 130 (147)
.+-..=|+++-++||..+.+.+...|+..+... -|.+...||++.||+..+
T Consensus 494 mSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 494 MSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 888999999999999999999999998888775 288999999999999533
No 95
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.19 E-value=0.0028 Score=36.66 Aligned_cols=46 Identities=24% Similarity=0.092 Sum_probs=38.3
Q ss_pred cCCceEEEEEEecCC--ceEEEEeEEEECcCccCCChHHHHHHHHHHH
Q 048638 55 KTRRPVAFARATGDD--VFNAIVWDVVVDPSYQGMGLGKAVMERLIDE 100 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 100 (147)
.++...|++.+.++. ....++.-++|.|+.||+|+|..++..+.+.
T Consensus 15 ~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 15 LSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred EeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 455677888777544 4578999999999999999999999988877
No 96
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.19 E-value=0.031 Score=37.69 Aligned_cols=82 Identities=21% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHhccCCce-EEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcce
Q 048638 30 FPRRDPDKIRVALENTSSL-LWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCN 108 (147)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 108 (147)
+...+.+.+..++...... .++.+..+|++||.+.+.........+. ..-+|++-.+++|+..+-.-++++++.|.+.
T Consensus 125 m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~lSAVY-~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y 203 (240)
T PRK01305 125 MDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDGLSAVY-TFYDPDEEHRSLGTFAILWQIELAKRLGLPY 203 (240)
T ss_pred CCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCceeeEE-EeeCCCccccCCHHHHHHHHHHHHHHcCCCe
Confidence 3345667777777765443 2333336899999998884444333333 5589999999999999999999999999999
Q ss_pred EEee
Q 048638 109 IALY 112 (147)
Q Consensus 109 i~~~ 112 (147)
+++.
T Consensus 204 ~YLG 207 (240)
T PRK01305 204 VYLG 207 (240)
T ss_pred Eeee
Confidence 8885
No 97
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.07 E-value=0.00085 Score=47.01 Aligned_cols=49 Identities=31% Similarity=0.436 Sum_probs=42.9
Q ss_pred CccCCChHHHHHHHHHHHHHHc-CcceEEeecCcchhhcchhcCCeeCCC
Q 048638 83 SYQGMGLGKAVMERLIDELLEK-GVCNIALYSEPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~~n~~~~~~y~k~Gf~~~~~ 131 (147)
.||-||+|+.||+.+...+++. |...+.+......+.+|.|+||+..+.
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecCh
Confidence 6899999999999999999986 777787777788899999999997653
No 98
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=97.06 E-value=0.036 Score=35.91 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=73.8
Q ss_pred EeecCcCChHHHHHHHHHc--CC---CCCCHHHHHHHhccCC--ceEEEEEccCCceEEEEEEec------CC-----ce
Q 048638 10 RRTISDLDINHLNSVFVAV--GF---PRRDPDKIRVALENTS--SLLWIEYEKTRRPVAFARATG------DD-----VF 71 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ivG~~~~~~------~~-----~~ 71 (147)
+|++++.|++++.+++... .+ +..+.+++..++...+ -..+|+.+.+|+|-.+++++. .. -.
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 7999999999999998874 22 3347777877775433 356777766779999998871 11 11
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCce
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
.++... .+... -=-++|+..++-.|+..|+....+-+--.-..|.+.+.|.+ ++|.-
T Consensus 111 aAY~fY-~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~-GdG~L 167 (190)
T PF02799_consen 111 AAYSFY-YVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGP-GDGNL 167 (190)
T ss_dssp EEEEEE-EEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EE-EEEEE
T ss_pred eeeeee-eeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccC-CCCCe
Confidence 333332 22222 22467888888889988988766543222236899999997 44443
No 99
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=97.01 E-value=0.0029 Score=43.24 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=37.7
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.+||+-+=.........+.-|.|.|.||++|+|+.|++..-+-.+..|
T Consensus 141 h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 141 HIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 588988755332223447889999999999999999999999887765
No 100
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=96.99 E-value=0.045 Score=38.70 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=80.8
Q ss_pred EeecCcCChHHHHHHHHHc-----CCCCCCHHHHHHHhccCCc--eEEEEEccCCceEEEEEEecCCc-----------e
Q 048638 10 RRTISDLDINHLNSVFVAV-----GFPRRDPDKIRVALENTSS--LLWIEYEKTRRPVAFARATGDDV-----------F 71 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ivG~~~~~~~~~-----------~ 71 (147)
.|++++.|++++++|+... -.+..+.+++...+.-..+ ..+|++..+|+|-+|++++.-+. .
T Consensus 263 ~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~ 342 (421)
T KOG2779|consen 263 LREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQ 342 (421)
T ss_pred cccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcceee
Confidence 6899999999999998764 2244566777666654333 46788767899999999872211 1
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCceeeEEecc
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIRGMVYSRK 141 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~ 141 (147)
.+|+. ..++.+ ---.+|+..++-.++..|+....+-+--.-..|+++++|-+-....+.+.|-.+
T Consensus 343 aaYly-Y~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~GdG~l~YYLYNwr 407 (421)
T KOG2779|consen 343 AAYLY-YNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGDGNLQYYLYNWR 407 (421)
T ss_pred eeeEE-EeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCCCceeEEEEecc
Confidence 23322 122222 123577777777888888877665432222469999999985544555555443
No 101
>PRK14852 hypothetical protein; Provisional
Probab=96.86 E-value=0.017 Score=46.15 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=82.9
Q ss_pred EeecCcCChHHHHHHHHH----cCCCCCCHHH--HHHHhccCCceEEEEEccCCceEEEEEEecC---------------
Q 048638 10 RRTISDLDINHLNSVFVA----VGFPRRDPDK--IRVALENTSSLLWIEYEKTRRPVAFARATGD--------------- 68 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~--------------- 68 (147)
....+.+|...+..|... .++....+.. +..+-..+....|++. ..+.+||...+..+
T Consensus 32 r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k-~~~~~l~T~t~~~ds~~~Gl~~D~lf~~e 110 (989)
T PRK14852 32 KIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFK-SYHDVLCTLTHIPDSGLFGLPMDTLYKPE 110 (989)
T ss_pred eecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEec-cCCcEEEEEEEecCCcccCcCHHHHHHHH
Confidence 344566666666665443 3665432222 2222223334456665 44677777766532
Q ss_pred -------CceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchh-cCCeeCCC
Q 048638 69 -------DVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRP-LGFVADPG 131 (147)
Q Consensus 69 -------~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k-~Gf~~~~~ 131 (147)
+...+.+..++++|+.|.+-+--.+++.+..++...++..+++..|+.-..||++ +||++.++
T Consensus 111 Ld~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 111 VDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccc
Confidence 2236888899999999988888888899888888789999999999999999985 99998664
No 102
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.85 E-value=0.0029 Score=46.37 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=38.0
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.+|||-+=.........+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 370 HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 370 HIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred EEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 688988755333223457889999999999999999999999888765
No 103
>PLN03239 histone acetyltransferase; Provisional
Probab=96.81 E-value=0.0039 Score=43.80 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=37.4
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.+||+-+=.........+.-|.|.|.||++|+|+.|++..-+..+..|
T Consensus 199 h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 199 HPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred EEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 688887755332223357889999999999999999999998887664
No 104
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.79 E-value=0.0084 Score=34.70 Aligned_cols=46 Identities=26% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCceEEEEEEecCC-ceEEEEeEEEECcCccCCChHHHHHHHHHHHH
Q 048638 56 TRRPVAFARATGDD-VFNAIVWDVVVDPSYQGMGLGKAVMERLIDEL 101 (147)
Q Consensus 56 ~~~ivG~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 101 (147)
++..=|++.+.++. ....++.-++|.|+.||+|+|..+++.+.+..
T Consensus 17 ~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 17 SEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred eCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 33344555555433 35789999999999999999999999888774
No 105
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=96.78 E-value=0.022 Score=40.17 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=53.9
Q ss_pred CHHHHHHHhccCC---ceEEEE-EccCCceEEEEEEec-------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHH
Q 048638 34 DPDKIRVALENTS---SLLWIE-YEKTRRPVAFARATG-------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELL 102 (147)
Q Consensus 34 ~~~~~~~~~~~~~---~~~~~~-~~~~~~ivG~~~~~~-------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 102 (147)
+++.+...++.+. ..+..+ ....+++|||++..+ .....+.|..+|||+..|+|+++.-|++.+.+.+.
T Consensus 118 s~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvn 197 (421)
T KOG2779|consen 118 SPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVN 197 (421)
T ss_pred cHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhh
Confidence 5566666666542 222322 224569999998653 33447889999999999999999999999999998
Q ss_pred HcCcc
Q 048638 103 EKGVC 107 (147)
Q Consensus 103 ~~~~~ 107 (147)
-.|+-
T Consensus 198 l~gIf 202 (421)
T KOG2779|consen 198 LEGIF 202 (421)
T ss_pred hhhhh
Confidence 77654
No 106
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.76 E-value=0.051 Score=33.04 Aligned_cols=94 Identities=19% Similarity=0.102 Sum_probs=64.1
Q ss_pred CHHHHHHHhccCCc-eEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 34 DPDKIRVALENTSS-LLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
+.+.+...+..... ...+....+|++||.+.+.........+. ..-+|++...++|+..+-..++.|++.|.+.+++.
T Consensus 24 ~~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~glSaVY-~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLG 102 (128)
T PF04377_consen 24 SQEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGLSAVY-TFYDPDYSKRSLGTYSILREIELARELGLPYYYLG 102 (128)
T ss_pred CHHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchhhhee-eeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeC
Confidence 46777777765433 23333347899999988874443322234 44799999999999999999999999999998885
Q ss_pred -cCcchhhcchhcCCee
Q 048638 113 -SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 113 -~n~~~~~~y~k~Gf~~ 128 (147)
-.....++==|..|.+
T Consensus 103 Y~I~~c~kM~YK~~f~P 119 (128)
T PF04377_consen 103 YWIHGCPKMNYKARFRP 119 (128)
T ss_pred eEeCCCCcccchhcCCc
Confidence 2233334434444544
No 107
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.74 E-value=0.0019 Score=46.76 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=44.6
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe-----ec---CcchhhcchhcCCee
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL-----YS---EPRVLGFYRPLGFVA 128 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~-----~~---n~~~~~~y~k~Gf~~ 128 (147)
.+.|..+.|||+||+-|+|..-+..+.+|..+..+....- .+ -..-.+||++.||+.
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfky 305 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKY 305 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceee
Confidence 5779999999999999999999999999998865433221 11 233357999999997
No 108
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.021 Score=37.81 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=43.3
Q ss_pred HHHHhccCCceEEEEEccC----CceEEEEEEe------------cCCceEEEEeEEEECcCccCCChHHHHHHHHHHH
Q 048638 38 IRVALENTSSLLWIEYEKT----RRPVAFARAT------------GDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDE 100 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~ivG~~~~~------------~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 100 (147)
.....+++...++...++. +.+.|++.+. ........|.+++|+++-|++|.|..|++++.+.
T Consensus 58 adKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~k 136 (264)
T KOG4601|consen 58 ADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKK 136 (264)
T ss_pred HHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHHh
Confidence 4444555555555554332 3678887654 1122357789999999999999999999988765
No 109
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=96.49 E-value=0.0036 Score=45.53 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=37.6
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.+||+-+=.........+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 292 h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 292 HMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred EEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 789988755333223357889999999999999999999888887654
No 110
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=96.47 E-value=0.01 Score=40.52 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=55.4
Q ss_pred EEEeecCcCChHHHHHHHHHc--CCCC--CCHHHHHHHhc-----------c-CCceEEEEEc-cCCceEEEEEEe----
Q 048638 8 ILRRTISDLDINHLNSVFVAV--GFPR--RDPDKIRVALE-----------N-TSSLLWIEYE-KTRRPVAFARAT---- 66 (147)
Q Consensus 8 ~~ir~~~~~d~~~l~~l~~~~--~~~~--~~~~~~~~~~~-----------~-~~~~~~~~~~-~~~~ivG~~~~~---- 66 (147)
.++||++..|++++.++-... +++. .+.+.+...+. . ...+.++.++ +.|+++|++.+.
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vG 81 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVG 81 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeec
Confidence 579999999999999996654 3322 12222332221 1 2345666664 468999987764
Q ss_pred ---cCC-----------------------------ceEEEEeEEEECcCccCCChHHHHHH
Q 048638 67 ---GDD-----------------------------VFNAIVWDVVVDPSYQGMGLGKAVME 95 (147)
Q Consensus 67 ---~~~-----------------------------~~~~~i~~~~v~~~~rg~Gig~~l~~ 95 (147)
+.. ....++..+.++|++|.-+-|..|-+
T Consensus 82 l~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 82 LNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred cCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 100 01355667999999997777775544
No 111
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=96.46 E-value=0.014 Score=33.84 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=33.9
Q ss_pred ceEEEEEccCCceEEEEEEec-----------------------CCceEEEEeEEEECcCccCCChHHHHH
Q 048638 47 SLLWIEYEKTRRPVAFARATG-----------------------DDVFNAIVWDVVVDPSYQGMGLGKAVM 94 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~-----------------------~~~~~~~i~~~~v~~~~rg~Gig~~l~ 94 (147)
...+++.+.+.++||++.+.. .....++++.++|+|+||+......|+
T Consensus 30 ~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 30 SVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 445555533335999998751 112378899999999999998877765
No 112
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=96.17 E-value=0.014 Score=41.34 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=39.7
Q ss_pred eEEEEEEe-----cCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhh
Q 048638 59 PVAFARAT-----GDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLG 119 (147)
Q Consensus 59 ivG~~~~~-----~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~ 119 (147)
++|+..++ ++. ....|..+-+.|.||++|+|+.|++.+....... ...+-++.+.++.+
T Consensus 200 ~~gy~tiyk~y~yid~-~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPse~ 263 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDR-IRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPSEA 263 (403)
T ss_pred eeeeEEEeehhhhhhh-hhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecCchHH
Confidence 56666665 222 3566888999999999999999999999666543 12333333444433
No 113
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=96.05 E-value=0.012 Score=42.17 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=38.0
Q ss_pred CceEEEEEccCC-ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc
Q 048638 46 SSLLWIEYEKTR-RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK 104 (147)
Q Consensus 46 ~~~~~~~~~~~~-~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 104 (147)
+..++|....++ ..||+-+=.-.......+.-|.|.|.||++|+|+.|++..-+-.+..
T Consensus 233 pFlFYVlte~d~~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 233 PFLFYVLTECDSYGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred ceEEEEEEecCCcceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 344455542222 13555443333323345778999999999999999999888777654
No 114
>PHA00432 internal virion protein A
Probab=96.03 E-value=0.037 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.046 Sum_probs=41.2
Q ss_pred eEEEEEccCCceEEEEEEecCCceEEEEeEEEECc---CccCCChHHHHHHHHHHHHHHc--CcceEEeecCcchhhcch
Q 048638 48 LLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDP---SYQGMGLGKAVMERLIDELLEK--GVCNIALYSEPRVLGFYR 122 (147)
Q Consensus 48 ~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~---~~rg~Gig~~l~~~~~~~~~~~--~~~~i~~~~n~~~~~~y~ 122 (147)
.++.+. .+|++++... ..+...|.+..-.|.. .+| +..-+.+.. ..+.+.+. -....+...|..+++|.+
T Consensus 38 ~~~~~~-~~G~~~aI~G--n~G~~vW~v~T~~v~~~~~~~~-reF~k~~~~-~ld~ml~~yp~LwNyV~~~N~~hir~Lk 112 (137)
T PHA00432 38 ECVTLS-LDGFVLAIGG--NQGDQVWFVTSDQVWRLTKKEK-REFRKLIME-YRDMMLDQYPSLWNYVWVGNKSHIRFLK 112 (137)
T ss_pred eEEEEe-cCCeEEEEec--CCCCceEEEecHHhhhCChhhh-HHHHHHHHH-HHHHHHHhhhhhheeeecCCHHHHHHHH
Confidence 345554 7999988873 2233334444333332 111 222222222 22222222 122344446999999999
Q ss_pred hcCCeeCCC
Q 048638 123 PLGFVADPG 131 (147)
Q Consensus 123 k~Gf~~~~~ 131 (147)
.+||+...+
T Consensus 113 ~lGf~f~~e 121 (137)
T PHA00432 113 SIGAVFHNE 121 (137)
T ss_pred HcCeeeecc
Confidence 999998554
No 115
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=95.81 E-value=0.26 Score=31.53 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=72.2
Q ss_pred EEeecCcC-ChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEec----CCceEEEEeEEEECcC
Q 048638 9 LRRTISDL-DINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATG----DDVFNAIVWDVVVDPS 83 (147)
Q Consensus 9 ~ir~~~~~-d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~----~~~~~~~i~~~~v~~~ 83 (147)
.....+.- |.+.|.+++....-...+.+.+...++......++. +..-|.+.+.+ ......++.-++|.|.
T Consensus 24 ~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~d----~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~ 99 (170)
T PF04768_consen 24 KHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYVD----EDYEGAAIVTPEGPDSNGPVPYLDKFAVSKS 99 (170)
T ss_dssp EESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEEE----TTSSEEEEEEEE-SCTCTSEEEEEEEEE-HH
T ss_pred EecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEEe----CCceEEEEEEecCCCCCCCCeEEEEEEecch
Confidence 34444444 788888887776534456677777777665555543 33444555532 2334899999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHcCcceEEee--cCcchhhcc-h-hcCCeeCCCCceeeEEe
Q 048638 84 YQGMGLGKAVMERLIDELLEKGVCNIALY--SEPRVLGFY-R-PLGFVADPGGIRGMVYS 139 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~~~i~~~--~n~~~~~~y-~-k~Gf~~~~~~~~~~~~~ 139 (147)
.||.|++..+.+.+.+.. +.++.. .+.+..++| + .-|+-. ..+-.-+++.
T Consensus 100 ~~g~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~~~~Wyf~rs~G~~~-~~~~~lFw~G 153 (170)
T PF04768_consen 100 AQGSGVADNVFNAIRKDF-----PKLFWRSREDNPNNKWYFERSDGSFK-RNGWVLFWYG 153 (170)
T ss_dssp HHHTTHHHHHHHHHHHH------SSEEEEEETT-TTHHHHHHH-SEEEE-ETTEEEEEES
T ss_pred hhhcCHHHHHHHHHHHhc-----cceEEEecCCCCcccEEEEeeEEEEE-CCCeEEEEcC
Confidence 999999999999996654 334443 334445565 3 456554 3334444444
No 116
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=95.55 E-value=0.045 Score=34.76 Aligned_cols=112 Identities=19% Similarity=0.078 Sum_probs=69.6
Q ss_pred ecCcCChHHHHHHHHHcCCCCC-----CHHHHHHHhccCCceEEEEEccCCceEEEEE-------EecCCceEEEEeEEE
Q 048638 12 TISDLDINHLNSVFVAVGFPRR-----DPDKIRVALENTSSLLWIEYEKTRRPVAFAR-------ATGDDVFNAIVWDVV 79 (147)
Q Consensus 12 ~~~~~d~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~-------~~~~~~~~~~i~~~~ 79 (147)
.++.+|-.++.++|...--+.. .-+.-.++--..+..-.+++ +..-+++.+. +....--.++++..+
T Consensus 14 eL~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgy-D~~GvaAH~G~LRRFIkVG~vDlLVaElGLyg 92 (196)
T PF02474_consen 14 ELQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGY-DSRGVAAHMGLLRRFIKVGEVDLLVAELGLYG 92 (196)
T ss_pred ccchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEee-cCchHHHHHHHHHHHhccCCcceeEEEEEEEE
Confidence 4566777788888765422211 11111112223344445555 3333433332 223333478899999
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcC
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLG 125 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~G 125 (147)
|.|+.+|.||+..+ ..+.....+.++...+.+...+.++.+++++
T Consensus 93 VRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 93 VRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred eeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 99999999999976 5777777777888887777777788887766
No 117
>PHA01733 hypothetical protein
Probab=95.43 E-value=0.041 Score=34.23 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=60.0
Q ss_pred EEeecCcCChHHHHH-HHH-----HcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecC-CceEEEEeEEEEC
Q 048638 9 LRRTISDLDINHLNS-VFV-----AVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGD-DVFNAIVWDVVVD 81 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~-l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~~v~ 81 (147)
+|+|++.+|+.++.. +-. -.+... ++..+...+.....-.+.+. .+|+++|.....++ ....+..+.+++.
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~-~p~~l~~~~~~s~~~v~~~~-~nG~l~aI~Gv~~d~~~~vG~pWlV~T~ 81 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH-SPLALHLSLDVSENVVAFVA-PDGSLAGVAGLVEDMGNRVGEIWMVCTP 81 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC-CcccchhhhhccccceEEEe-cCCcEEEEecccccccCCCCceeEEecH
Confidence 467778777754433 211 112222 22233333443333324443 68999999888753 2233444544444
Q ss_pred cCccCCChHHHHHHHHHHHHHHc-CcceEEe---ecCcchhhcchhcCCeeCC
Q 048638 82 PSYQGMGLGKAVMERLIDELLEK-GVCNIAL---YSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 82 ~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~---~~n~~~~~~y~k~Gf~~~~ 130 (147)
.=.+ +-..++........+. .+..+.- ..|..+++|.+.+||+...
T Consensus 82 ~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~ 131 (153)
T PHA01733 82 AIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLR 131 (153)
T ss_pred HhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeec
Confidence 3222 2233444444444332 3333322 2599999999999999743
No 118
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.65 E-value=0.042 Score=42.43 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.7
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHH
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLE 103 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~ 103 (147)
.+.|.+++|+|+|++.|+|++.++.+.++...
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG 645 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEG 645 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhc
Confidence 47788999999999999999999999988753
No 119
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=94.56 E-value=0.58 Score=32.86 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred eEEEeecCcCChHHHHHHHHHcCCCC--------CCHHHHHHHhccCCc---eEEEEE-ccCCceEEEEEEe-------c
Q 048638 7 FILRRTISDLDINHLNSVFVAVGFPR--------RDPDKIRVALENTSS---LLWIEY-EKTRRPVAFARAT-------G 67 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~~l~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~-~~~~~ivG~~~~~-------~ 67 (147)
.+++......++.+++.++...-..+ -+.+.+...+..+.. .+..+. ....++|||++.. .
T Consensus 81 wc~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRg 160 (451)
T COG5092 81 WCVIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRG 160 (451)
T ss_pred eeeEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcc
Confidence 35566667777777777765431111 133455555554322 223322 1234899998765 2
Q ss_pred CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcce
Q 048638 68 DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCN 108 (147)
Q Consensus 68 ~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 108 (147)
.....+.+..+||+.+.|++-+..-|++.+.+.+...|+..
T Consensus 161 K~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 161 KRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred cccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 33447889999999999999999999999999998777544
No 120
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.55 Score=35.77 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=79.9
Q ss_pred ceEEEeecCcCChHHHHHHHHHc------CCCCC-CHHH-----HHHHhccCCceEEEEEccCCceEEEEEEecCCc---
Q 048638 6 GFILRRTISDLDINHLNSVFVAV------GFPRR-DPDK-----IRVALENTSSLLWIEYEKTRRPVAFARATGDDV--- 70 (147)
Q Consensus 6 ~~~~ir~~~~~d~~~l~~l~~~~------~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~--- 70 (147)
.+..+||....|.+.+..+.... ..|.. .++. +-..+.-....++++.+.+++++|++...-+..
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~ 757 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFS 757 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhh
Confidence 45679999999999998875532 11211 1111 122233345678888877889999987530000
Q ss_pred ------------------------e---------------------------------EEEEeEEEECcCccCCChHHHH
Q 048638 71 ------------------------F---------------------------------NAIVWDVVVDPSYQGMGLGKAV 93 (147)
Q Consensus 71 ------------------------~---------------------------------~~~i~~~~v~~~~rg~Gig~~l 93 (147)
. ...+.-..++.+.-.-++.+.+
T Consensus 758 rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m 837 (891)
T KOG3698|consen 758 RNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKKM 837 (891)
T ss_pred hceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHHH
Confidence 0 0000012344455567899999
Q ss_pred HHHHHHHHHHcCcceEEee---cCcchhhcchhcCCee
Q 048638 94 MERLIDELLEKGVCNIALY---SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~---~n~~~~~~y~k~Gf~~ 128 (147)
++-+...++..|.....+. .+..-++||.++||.-
T Consensus 838 ~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d 875 (891)
T KOG3698|consen 838 IQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTD 875 (891)
T ss_pred HHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHH
Confidence 9999999999888776665 3677899999999975
No 121
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=93.33 E-value=0.044 Score=38.58 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=32.3
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHH
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELL 102 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 102 (147)
.+||+-+=.-.+.....+..+-+.|.||++|+|+.|++..-.-.+
T Consensus 248 h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 248 HLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred eeeeeechhhcccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 478887755333333457778899999999999998876554443
No 122
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=93.22 E-value=2.4 Score=30.81 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=70.2
Q ss_pred cCcCChHHHHHHHHHc-----CCCCCCHHHHHHHhcc-CCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccC
Q 048638 13 ISDLDINHLNSVFVAV-----GFPRRDPDKIRVALEN-TSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQG 86 (147)
Q Consensus 13 ~~~~d~~~l~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg 86 (147)
+++++++.+..+|... +.+..+.+.+....+. ++...+++...+|++||++.+...+. ..+-...+...++.+
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~-~LyGRYwG~~~~~~~ 288 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDD-TLYGRYWGCDEEIPF 288 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCC-EEEEeeecccccccC
Confidence 4566777888887654 2233366666655544 33444444448999999998875544 333333444555543
Q ss_pred CChHHHHHHHHHHHHHHcCcceEEeecCcchhhcc-hhcCCeeCCCCc
Q 048638 87 MGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFY-RPLGFVADPGGI 133 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y-~k~Gf~~~~~~~ 133 (147)
.= -..+.-..+++|-++|++.+...+ ..=. ...||.++..-.
T Consensus 289 LH-Fe~cYYq~Ie~aI~~Gl~~f~~Ga----qGEHK~~RGf~P~~t~S 331 (370)
T PF04339_consen 289 LH-FELCYYQGIEYAIEHGLRRFEPGA----QGEHKIARGFEPVPTYS 331 (370)
T ss_pred cc-hHHHHHHHHHHHHHcCCCEEECCc----chhHHHHcCCcccccee
Confidence 22 345667889999999998876543 2222 268999766433
No 123
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=92.97 E-value=1.4 Score=30.76 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=62.4
Q ss_pred cCCceEEEEEccCCceEEEEEEec------CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc---------Ccce
Q 048638 44 NTSSLLWIEYEKTRRPVAFARATG------DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK---------GVCN 108 (147)
Q Consensus 44 ~~~~~~~~~~~~~~~ivG~~~~~~------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~---------~~~~ 108 (147)
+..+...++ ..+.+|+.+.+.+ .+.....|..+.|+.=|..-|+-..|+++++-..++. |.+.
T Consensus 167 ~~~NT~IIv--YRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si 244 (304)
T PF11124_consen 167 NGKNTHIIV--YRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSI 244 (304)
T ss_pred cCCcceEEE--EcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceE
Confidence 444555555 4778999998873 3344688899999999999999999999997666541 2222
Q ss_pred -EEee---cCcchhhcchhcCCeeCC
Q 048638 109 -IALY---SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 109 -i~~~---~n~~~~~~y~k~Gf~~~~ 130 (147)
+.++ -+....+..++.||....
T Consensus 245 ~ll~d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 245 KLLVDVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EEEEEeeeccHHHHHHHHHCCCeeee
Confidence 2222 267889999999999866
No 124
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=92.72 E-value=1.2 Score=36.97 Aligned_cols=63 Identities=16% Similarity=0.011 Sum_probs=48.8
Q ss_pred EEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 49 LWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
++.+.+.+|+++|++.+.+.+...+.+.-+--+|+- =+|+.-.|+..++.++++.|++.+.+.
T Consensus 422 i~~a~d~~G~i~af~s~~p~~~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg 484 (1094)
T PRK02983 422 LVEAHDADGQVVALLSFVPWGRRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLN 484 (1094)
T ss_pred EEEEECCCCeEEEEEEEeeeCCCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEec
Confidence 344556689999999999765544555544444554 689999999999999999999998875
No 125
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=92.54 E-value=1.6 Score=27.05 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=64.7
Q ss_pred EEeecCcCChHHHHHHHHHc---------CCCCC--------CHHHHHHHhccCCceEEEEEccCCceEEEEEEe---cC
Q 048638 9 LRRTISDLDINHLNSVFVAV---------GFPRR--------DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT---GD 68 (147)
Q Consensus 9 ~ir~~~~~d~~~l~~l~~~~---------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~---~~ 68 (147)
..|+..+.|.+.+..+-... ..|.. +...+. ++. .....|++.+.++++.||+... ..
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alr-fy~-RsgHSFvA~~e~~~~~GfvLAQaVWQG 79 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALR-FYE-RSGHSFVAEDEGGELQGFVLAQAVWQG 79 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHH-HHH-CCS--EEEE-ETTEEEEEEEEEEEE-S
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhh-hhh-ccCCcEEEEccCCceeeeeehhHHhcC
Confidence 45788899999998872111 11211 222222 222 3456788876888999998754 34
Q ss_pred CceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCC
Q 048638 69 DVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 69 ~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~ 130 (147)
......+..+.+.| -+......-|+..+.+-+-+.++..+.+.-.+....-.+..||...+
T Consensus 80 drptVlV~ri~~~~-~~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 80 DRPTVLVRRILLAP-GEPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp SSEEEEEEEE---E-ESSHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred CCceEEEEEeecCC-CCcHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 44466677775554 45568888899999999988898888887666666666777777544
No 126
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=92.47 E-value=1 Score=31.42 Aligned_cols=98 Identities=16% Similarity=-0.002 Sum_probs=54.4
Q ss_pred CcCChHHHHHHHHHcCCCC--CCHHHHHHHhc---cCCceEEEEEccCCceEEEEEEecCC-ceEEEEeEEEECcCccCC
Q 048638 14 SDLDINHLNSVFVAVGFPR--RDPDKIRVALE---NTSSLLWIEYEKTRRPVAFARATGDD-VFNAIVWDVVVDPSYQGM 87 (147)
Q Consensus 14 ~~~d~~~l~~l~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~ivG~~~~~~~~-~~~~~i~~~~v~~~~rg~ 87 (147)
++++.+++.++.....-.. .........+. ......+++...+|+++|++...+.. ...+.+.-.--+|+ -=+
T Consensus 142 ~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~ 220 (299)
T PF09924_consen 142 DPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APK 220 (299)
T ss_dssp -GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--ST
T ss_pred CHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCC
Confidence 6777777777754421111 11122222222 22455677773499999999988554 43443443333344 458
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEee
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
|+-..|+..+++++++.|++.+.+.
T Consensus 221 G~~e~l~~~~~~~~~~~g~~~lnLg 245 (299)
T PF09924_consen 221 GIYEFLNVEFAEHLKAEGVEYLNLG 245 (299)
T ss_dssp THHHHHHHHHHHHS--TT--EEE--
T ss_pred cHHHHHHHHHHHhhhhCCceEEEcc
Confidence 9999999999999998898888753
No 127
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=92.28 E-value=1.2 Score=28.82 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=45.6
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
..+|+.++.. +.|.+..|+..+...+...|++-++.+.+...+.++.|+|..+
T Consensus 87 IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~~ 139 (179)
T PF12261_consen 87 IVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLGLPP 139 (179)
T ss_pred eeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCCc
Confidence 4556655443 5899999999999999999999999998999999999999986
No 128
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=2.2 Score=32.49 Aligned_cols=63 Identities=17% Similarity=0.005 Sum_probs=48.1
Q ss_pred EEEEEccCCceEEEEEEecCCc-eEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 49 LWIEYEKTRRPVAFARATGDDV-FNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
...+.+.+|+|+|++.+.+... ....+.-+--+|+-- +|+...|+..++.+++++|++.+.+.
T Consensus 394 ~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLg 457 (538)
T COG2898 394 PVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLG 457 (538)
T ss_pred eeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecC
Confidence 3445567889999999997544 344455555555554 79999999999999999999998875
No 129
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=91.15 E-value=1.4 Score=31.83 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEec---CCceEEEEeEEEECcCccC-CChH
Q 048638 15 DLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATG---DDVFNAIVWDVVVDPSYQG-MGLG 90 (147)
Q Consensus 15 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~---~~~~~~~i~~~~v~~~~rg-~Gig 90 (147)
.-|++.+..+.++..-....++.+...+..+-...+++ |.--|.+.+.. .++...|+.-++|.++.|| -||+
T Consensus 344 ~Ldl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVs----gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gis 419 (495)
T COG5630 344 DLDLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVS----GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGIS 419 (495)
T ss_pred hcCcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEee----ccceeeEEEEeeccCCCCCcceeeeeccccccccchHH
Confidence 34666777776554434456777777776654444444 33445555542 3345789999999999999 8999
Q ss_pred HHHHHHHHHHHH
Q 048638 91 KAVMERLIDELL 102 (147)
Q Consensus 91 ~~l~~~~~~~~~ 102 (147)
..++.-+.+..-
T Consensus 420 d~vfniM~e~fP 431 (495)
T COG5630 420 DAVFNIMREEFP 431 (495)
T ss_pred HHHHHHHHHhCc
Confidence 998888777654
No 130
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=91.02 E-value=1.5 Score=25.82 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCceEEEEEEecC------CceEEEEeEEEECcCccC-CChHHHHHHHHHH
Q 048638 56 TRRPVAFARATGD------DVFNAIVWDVVVDPSYQG-MGLGKAVMERLID 99 (147)
Q Consensus 56 ~~~ivG~~~~~~~------~~~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~ 99 (147)
++..=|.+.+..+ +....++.-++|.+..|| .|++..+...+.+
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 4444455555532 245689999999999997 8999999998877
No 131
>PRK00756 acyltransferase NodA; Provisional
Probab=90.59 E-value=1.7 Score=27.64 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=61.0
Q ss_pred ecCcCChHHHHHHHHHcCCCCC-----CHHHHHHHhccCCceEEEEEccCCceEEEEE-------EecCCceEEEEeEEE
Q 048638 12 TISDLDINHLNSVFVAVGFPRR-----DPDKIRVALENTSSLLWIEYEKTRRPVAFAR-------ATGDDVFNAIVWDVV 79 (147)
Q Consensus 12 ~~~~~d~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~-------~~~~~~~~~~i~~~~ 79 (147)
.++..|-.++.++|...--+.. .-+.-..+-...+..-.+++|.+| +.+.+. +...+--.++++..+
T Consensus 14 eL~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~G-VaAH~G~LRRFIkVg~vDlLVaElGLyg 92 (196)
T PRK00756 14 ELELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHG-VAAHMGLLRRFIKVGEVDLLVAELGLYG 92 (196)
T ss_pred ccccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCcc-HhHhHHHHhhhheecccceeEEEeeeee
Confidence 4556677788888765422211 101111111223444455553333 333222 223334478899999
Q ss_pred ECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchh
Q 048638 80 VDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRP 123 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k 123 (147)
|.|+..|.||+..+ ..+.-..++.++..-+-+...+.++-.++
T Consensus 93 VRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PRK00756 93 VRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRNHVER 135 (196)
T ss_pred eccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHHHHHH
Confidence 99999999998877 56666666667776655544444443333
No 132
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=89.49 E-value=0.53 Score=32.30 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeC
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~ 129 (147)
+-...++..+.+.|++.|+.+|.+........+|++.||...
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e 62 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEE 62 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEE
Confidence 446899999999999999999999987788999999999974
No 133
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=89.08 E-value=1.5 Score=24.63 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=38.1
Q ss_pred ccCCceEEEEEEecCCceEEEEeEEEECcCcc-----CCChHHHHHHHHHHHHHHcC-cceEEeecCcchhhcchhcCCe
Q 048638 54 EKTRRPVAFARATGDDVFNAIVWDVVVDPSYQ-----GMGLGKAVMERLIDELLEKG-VCNIALYSEPRVLGFYRPLGFV 127 (147)
Q Consensus 54 ~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~r-----g~Gig~~l~~~~~~~~~~~~-~~~i~~~~n~~~~~~y~k~Gf~ 127 (147)
+..|++++...... .. ++.+.++.-++ ..-+-+.+...+....+..+ ....+...|...++|.+.+|++
T Consensus 6 ~~~g~~lAiGG~~g--~~---~Wfvtt~~v~~~~~~~~~eF~k~i~~~~d~~l~~Y~~l~N~V~~~N~~HIRfLk~lGA~ 80 (86)
T PF11090_consen 6 EHKGRPLAIGGNNG--GC---LWFVTTNKVKSLTKKERREFRKLIKEYLDKMLKQYPVLWNFVWVGNKSHIRFLKSLGAV 80 (86)
T ss_pred ecCCeEEEEccccC--Ce---EEEEECcHHhhcCHhhhHHHHHHHHHHHHHHHHHhhheeEEEEeCCHHHHHHHHhcCcE
Confidence 36778877765552 22 22233332221 12233333333333333222 3334455799999999999998
Q ss_pred eCC
Q 048638 128 ADP 130 (147)
Q Consensus 128 ~~~ 130 (147)
...
T Consensus 81 f~~ 83 (86)
T PF11090_consen 81 FHN 83 (86)
T ss_pred Ecc
Confidence 644
No 134
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=87.58 E-value=6.8 Score=26.73 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=28.2
Q ss_pred EEEEeEEEECcCccCCChHHHHHHHHHHHHHH
Q 048638 72 NAIVWDVVVDPSYQGMGLGKAVMERLIDELLE 103 (147)
Q Consensus 72 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~ 103 (147)
...|.++-|.+.-|++|+++.|++.+......
T Consensus 183 ~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~~ 214 (257)
T KOG3014|consen 183 ICGISRIWVSSLRRRKGIASLLLDVARCNFVY 214 (257)
T ss_pred EeeeEEEEeehhhhhhhhHHHHHHHHHHhhhh
Confidence 56788999999999999999999999877654
No 135
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=85.99 E-value=4.9 Score=23.28 Aligned_cols=45 Identities=7% Similarity=-0.083 Sum_probs=34.7
Q ss_pred CCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHH
Q 048638 56 TRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDE 100 (147)
Q Consensus 56 ~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 100 (147)
++..=|.+.+..+.....++.-++|.+.-++.|++..+.+.+.+.
T Consensus 17 de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d 61 (98)
T cd03173 17 DEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD 61 (98)
T ss_pred cCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhh
Confidence 333445555565444578899999999999999999999988876
No 136
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=84.04 E-value=1.7 Score=26.42 Aligned_cols=55 Identities=31% Similarity=0.307 Sum_probs=39.6
Q ss_pred CccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCceeeEE
Q 048638 83 SYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIRGMVY 138 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~ 138 (147)
|=||=|+|+.+++.+.+.+.+ ....+-+-||.-|-.-..|.|-..-..+....++
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~-~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~ 60 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE-EVEIIALGTNAIATSAMLKAGANEGATGENAIVV 60 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC-CcEEEEEehhHHHHHHHHHcCCCCcccccchhee
Confidence 348999999999999888754 3555666789888888888887664444444333
No 137
>PHA02769 hypothetical protein; Provisional
Probab=83.95 E-value=1.4 Score=26.07 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHHHHH---HHHHHcCcceEEee-cCcchhhcchhcCCeeCCCCce
Q 048638 90 GKAVMERLI---DELLEKGVCNIALY-SEPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 90 g~~l~~~~~---~~~~~~~~~~i~~~-~n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
|..|+..+. +..+..|...+..- -...+.++|.|.||+.++...+
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~tsr 142 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQTSR 142 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccccc
Confidence 455555544 44445576666543 2456788999999998665443
No 138
>PRK04531 acetylglutamate kinase; Provisional
Probab=80.49 E-value=21 Score=26.40 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=62.4
Q ss_pred cCcCChHHHHHHHHHcCCCCCCHHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHH
Q 048638 13 ISDLDINHLNSVFVAVGFPRRDPDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKA 92 (147)
Q Consensus 13 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ 92 (147)
+..-|.+.+..++.. .+..... ..+++.. ..+.++ .++..=|.+.+..+ ....++.-++|.++.||.|++..
T Consensus 259 ~~~~d~~~l~~ll~~-sf~r~~~---~~y~~~~--~~~~~y-~~~~y~~~Aiv~~~-~~~~~Ldkf~v~~~~~~~~v~d~ 330 (398)
T PRK04531 259 WDELDLERLNLLIES-SFGRTLK---PDYFDTT--QLLRAY-VSENYRAAAILTET-GGGPYLDKFAVLDDARGEGLGRA 330 (398)
T ss_pred hhhcCHHHHHHHHhh-hcccchH---HHHhccC--CceEEE-EeCCCcEEEEEecC-CCceEeEEEEEccchhhcChHHH
Confidence 334466666666533 2222222 2233322 122232 34444455555543 33688999999999999999999
Q ss_pred HHHHHHHHHHHcCcceEEee--cCcchhhcc-h-hcCCeeCCCCceeeEEec
Q 048638 93 VMERLIDELLEKGVCNIALY--SEPRVLGFY-R-PLGFVADPGGIRGMVYSR 140 (147)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~--~n~~~~~~y-~-k~Gf~~~~~~~~~~~~~~ 140 (147)
+...+.+.. +.++.. .+.+..++| + .-|+.. ..+-.-+||..
T Consensus 331 vf~~~~~~~-----~~L~Wrsr~~n~~~~Wyf~~s~G~~~-~~~~~lFw~G~ 376 (398)
T PRK04531 331 VWNVMREET-----PQLFWRSRHNNTINKFYYAESDGCIK-QEKWKVFWYGL 376 (398)
T ss_pred HHHHHHhhC-----CceEEEcCCCCCccceeeecccceEe-cCCcEEEEccC
Confidence 999888775 234443 222333444 3 456554 44444555543
No 139
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=79.92 E-value=9.1 Score=28.22 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=45.1
Q ss_pred EEEEEcc-CCceEEEEEEe---cC-CceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeec----------
Q 048638 49 LWIEYEK-TRRPVAFARAT---GD-DVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYS---------- 113 (147)
Q Consensus 49 ~~~~~~~-~~~ivG~~~~~---~~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~---------- 113 (147)
.+++... +++++|.+.+. +. +...+++..--|. +|....+-..+++.+.++++.+++-.+.+..
T Consensus 36 ~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~-d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~ 114 (406)
T PF02388_consen 36 ERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVM-DYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDED 114 (406)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC--TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TT
T ss_pred EEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhcccc
Confidence 3444334 46777766554 22 2224444432211 7888889999999999999887655555431
Q ss_pred --------CcchhhcchhcCCeeC
Q 048638 114 --------EPRVLGFYRPLGFVAD 129 (147)
Q Consensus 114 --------n~~~~~~y~k~Gf~~~ 129 (147)
|...+..++++||...
T Consensus 115 g~~~~~~~~~~~~~~l~~~G~~~~ 138 (406)
T PF02388_consen 115 GEPIEGEENDELIENLKALGFRHQ 138 (406)
T ss_dssp S-EEEE-S-THHHHHHHHTT-CCT
T ss_pred cccccCcchHHHHHHHHhcCceec
Confidence 3455678899999873
No 140
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=79.39 E-value=3.2 Score=25.40 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee-----CCCCceeeEEecccc
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA-----DPGGIRGMVYSRKSK 143 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~-----~~~~~~~~~~~~~~~ 143 (147)
+.-..=++.+.+++++.|.-...+..+++..++.++-||.+ .-+|.+.+.|+++.+
T Consensus 19 ~~v~~~~r~ml~~ak~~g~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G~~fY~Ys~~~P 79 (142)
T PF11633_consen 19 GVVSWNFRAMLQHAKETGLLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDGVQFYFYSSKTP 79 (142)
T ss_dssp CEE---CHHHHHHHHHHT-EEEEETT-HHHHHHHHHTTS---SEEEES-SSEEEEE-TTS-
T ss_pred eeeehhHHHHHHHHHhcCcEEEEEeccHHHHHHHhccCcccccceEEecceEEEEEecCCc
Confidence 33344456788888888877766777888899999988876 344667777877765
No 141
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=79.04 E-value=20 Score=25.28 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=47.2
Q ss_pred CHHHHHHHhccCCc--eEEEEEccCCceEEEEEEec-CCceEEEEe--EEEECcCccCCChHHHH----HHHHHHHHHHc
Q 048638 34 DPDKIRVALENTSS--LLWIEYEKTRRPVAFARATG-DDVFNAIVW--DVVVDPSYQGMGLGKAV----MERLIDELLEK 104 (147)
Q Consensus 34 ~~~~~~~~~~~~~~--~~~~~~~~~~~ivG~~~~~~-~~~~~~~i~--~~~v~~~~rg~Gig~~l----~~~~~~~~~~~ 104 (147)
..+.+.+.+..-.. +..|+. .+|+++|+-.+.. +.+...++. ..+++|++..--.|+-| ++.+.+.|++.
T Consensus 188 ~~~~l~e~f~~Lr~l~fG~VLf-l~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~ 266 (298)
T PRK15312 188 PADNLANFFSQLRHLLFGHILY-IEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQER 266 (298)
T ss_pred cHHHHHHHHHHhHHhheeeEEE-ECCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEEEEecHHHHHHHHHhc
Confidence 34555555543322 223444 7999999987763 333222222 46799999999999976 47777777777
Q ss_pred CcceE
Q 048638 105 GVCNI 109 (147)
Q Consensus 105 ~~~~i 109 (147)
|.+..
T Consensus 267 ~K~lr 271 (298)
T PRK15312 267 QKKLI 271 (298)
T ss_pred CCcEE
Confidence 64433
No 142
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=77.88 E-value=23 Score=25.34 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=65.2
Q ss_pred EeecCcCChHHHHHHHHHcCC-----CCCCHHHHHHHhcc-------CCceEEEEEccCCceEEEEEEecC---------
Q 048638 10 RRTISDLDINHLNSVFVAVGF-----PRRDPDKIRVALEN-------TSSLLWIEYEKTRRPVAFARATGD--------- 68 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ivG~~~~~~~--------- 68 (147)
+|++...|++++.+|+.+..- ...+.+.+...+.. .-.+.+|+...+|+|-+|.+++.-
T Consensus 261 lR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~k 340 (451)
T COG5092 261 LRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENKK 340 (451)
T ss_pred cchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCcc
Confidence 688999999999999876421 11123333332221 122456777778999998887621
Q ss_pred --CceEEEEeEEEECcCccCCChHHHHHHHHHH-----------HHHHcCcceEEeecCcchhhcchhcCCeeCCCCce
Q 048638 69 --DVFNAIVWDVVVDPSYQGMGLGKAVMERLID-----------ELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIR 134 (147)
Q Consensus 69 --~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~-----------~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (147)
....++++..+.+..+ +.+....-.++.. .++..|+...-+-+--.-.-|...++|.. ++|.-
T Consensus 341 ykdiq~gYLYYya~d~~~--kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~-GdGfl 416 (451)
T COG5092 341 YKDIQGGYLYYYAGDDQF--KDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGC-GDGFL 416 (451)
T ss_pred ccccceeEEEEEccCccc--cccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccC-CCcee
Confidence 1224666666555533 3343333333332 23333444333222122234778899987 44443
No 143
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=77.54 E-value=21 Score=24.76 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=56.8
Q ss_pred EeecCcCChHHHHHHHHHc--CCCCCCHHHHHHHhccCCce--EEEEEccCCceEEEEEEec-CCceEEEEe--EEEECc
Q 048638 10 RRTISDLDINHLNSVFVAV--GFPRRDPDKIRVALENTSSL--LWIEYEKTRRPVAFARATG-DDVFNAIVW--DVVVDP 82 (147)
Q Consensus 10 ir~~~~~d~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ivG~~~~~~-~~~~~~~i~--~~~v~~ 82 (147)
+...+++++.++..-+-.. +......+.+...+..-... ..+++ .+|+++|+-.+.. +.+...++. ..+++|
T Consensus 132 v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~-l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp 210 (264)
T PF07395_consen 132 VSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLF-LNGQPCAIQLVYKVESPKWVYFDYINGGYDP 210 (264)
T ss_pred HHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEE-ECCcceEEEEEEEecCCCeEEEecccCccCc
Confidence 3344444444443322222 33323334444444432222 23444 7999999987763 333333333 467899
Q ss_pred CccCCChHHHHH----HHHHHHHHHcCcceEE
Q 048638 83 SYQGMGLGKAVM----ERLIDELLEKGVCNIA 110 (147)
Q Consensus 83 ~~rg~Gig~~l~----~~~~~~~~~~~~~~i~ 110 (147)
+++.--.|+-|| +.+.++|++.|....+
T Consensus 211 ~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrf 242 (264)
T PF07395_consen 211 ECRDFSPGSILMWLNIQDAWEYCRAQGKPLRF 242 (264)
T ss_pred ccccCCCccEEEEeeHHHHHHHHHHhCCceEE
Confidence 999999999774 7777888877755443
No 144
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=76.70 E-value=6.9 Score=26.01 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhc--cCCceEEEEEccCCceEEEEEEecCC----ceEEEEeE-EEECcCc
Q 048638 32 RRDPDKIRVALE--NTSSLLWIEYEKTRRPVAFARATGDD----VFNAIVWD-VVVDPSY 84 (147)
Q Consensus 32 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ivG~~~~~~~~----~~~~~i~~-~~v~~~~ 84 (147)
..+...|...+. ..+....+..+.+|++.|++.+.... .....+.. ++.+++-
T Consensus 7 ~R~~~~w~~~~~~~~~~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A 66 (218)
T PF13530_consen 7 VRDEAWWRRLLREREKDRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEA 66 (218)
T ss_dssp E--HHHHHHHCHTTCCGSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHH
T ss_pred cCCHHHHHHHhhcccCCceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHH
Confidence 345666776662 33445555666899999999988554 13455554 4555543
No 145
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=76.52 E-value=7.3 Score=19.26 Aligned_cols=32 Identities=3% Similarity=-0.044 Sum_probs=19.7
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
+.......+...+...+.+.+++++++|.+..
T Consensus 17 ~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 17 SLEEALEIMRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp BHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred cHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence 33444444444444455556688999999864
No 146
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=74.48 E-value=2 Score=33.73 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEec-CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC-cceEEee
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARATG-DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG-VCNIALY 112 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~i~~~ 112 (147)
.+...+.........+.....+-.+||.....+ .+.....+..-+|..+.|-+|+|+-++.++.++.+..+ +......
T Consensus 407 kEyi~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~lty 486 (720)
T KOG1472|consen 407 KEYISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTY 486 (720)
T ss_pred HHHHHhhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHh
Confidence 344444443433444433312222777766653 22234667778899999999999999999999998775 5555556
Q ss_pred cCcchhhcchhcCCee
Q 048638 113 SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 113 ~n~~~~~~y~k~Gf~~ 128 (147)
+...++..+++.||..
T Consensus 487 ad~~aigyfkkqgfs~ 502 (720)
T KOG1472|consen 487 ADEGAIGYFKKQGFSK 502 (720)
T ss_pred hhhcccccccCccchh
Confidence 7788899999999974
No 147
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=70.93 E-value=32 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=41.5
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe-ecCcchhhcchhcCCee
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL-YSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~-~~n~~~~~~y~k~Gf~~ 128 (147)
++.++|......+...|++.+.+.+.+.|+..+-+ ..++.-....+..||..
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~ 157 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAEENGLSSWHILFPDEEDAAALEEAGFLS 157 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeecCCHHHHHHHHhCCCce
Confidence 57788888888999999999999999998776554 45555566778888875
No 148
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.76 E-value=50 Score=24.46 Aligned_cols=69 Identities=19% Similarity=0.055 Sum_probs=46.6
Q ss_pred ceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeec-----C--cchhhcch-hcCCe
Q 048638 58 RPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYS-----E--PRVLGFYR-PLGFV 127 (147)
Q Consensus 58 ~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~-----n--~~~~~~y~-k~Gf~ 127 (147)
.+++.+.+...+....++ .-+-+++|+.-+-.-.|.-.++.++.++|++..-... + .....+|. |.||-
T Consensus 303 ~~la~~l~~~~g~~~~yl-y~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~~~~~Gl~~FK~~F~ 379 (406)
T PF02388_consen 303 IPLAGALFIYYGDEAYYL-YGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGGISGDFDGSDPDYGLYKFKKGFG 379 (406)
T ss_dssp EEEEEEEEEEETTEEEEE-EEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE-SSSSTTTHTTHHHHHHHHCCT
T ss_pred ceEEEEEEEEECCEEEEE-ECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeCCCCCCCCCcccchHHHHhhcCC
Confidence 466666666555555554 4578899999998899999999999999988766531 1 22236665 66664
No 149
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.23 E-value=12 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHc--CcceEEeecCc---chhhcchhcCCeeCCCCc
Q 048638 88 GLGKAVMERLIDELLEK--GVCNIALYSEP---RVLGFYRPLGFVADPGGI 133 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~--~~~~i~~~~n~---~~~~~y~k~Gf~~~~~~~ 133 (147)
|+|..++..+++...+. +..++.+..|. ..+.+..+++|....+.+
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETI 143 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeee
Confidence 89999999999999886 67788888654 346677899999754433
No 150
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.12 E-value=42 Score=23.06 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=44.1
Q ss_pred CCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 56 TRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 56 ~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
.|++|+.+...--.+..-.+. ..-+|++...++|+..+-.=+.++++.|...+++.
T Consensus 159 ~G~LvAVavtDvL~dGlSsVY-~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLG 214 (253)
T COG2935 159 EGKLVAVAVTDVLPDGLSSVY-TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLG 214 (253)
T ss_pred CCcEEEEEeeecccCcceeEE-EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEE
Confidence 689999888773333222233 44799999999999999999999999999999985
No 151
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=63.39 E-value=9.6 Score=25.93 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCcceEEeec------CcchhhcchhcCCeeCC
Q 048638 92 AVMERLIDELLEKGVCNIALYS------EPRVLGFYRPLGFVADP 130 (147)
Q Consensus 92 ~l~~~~~~~~~~~~~~~i~~~~------n~~~~~~y~k~Gf~~~~ 130 (147)
.-...+.+-++..|.++|.+.+ |.....||++.||++..
T Consensus 106 t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~ 150 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVN 150 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEee
Confidence 3445566666677999988753 78889999999999844
No 152
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=62.06 E-value=5.6 Score=23.20 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=13.7
Q ss_pred cCcchhhcchhcCCeeC
Q 048638 113 SEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 113 ~n~~~~~~y~k~Gf~~~ 129 (147)
.=..+..||+++||+..
T Consensus 10 D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 10 DMAKSLDFYRRLGFDFP 26 (122)
T ss_pred cHHHHHHHHHHhCceec
Confidence 34688999999999874
No 153
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.12 E-value=12 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=22.8
Q ss_pred HHHHcCcceEEee------cCcchhhcchhcCCeeCC
Q 048638 100 ELLEKGVCNIALY------SEPRVLGFYRPLGFVADP 130 (147)
Q Consensus 100 ~~~~~~~~~i~~~------~n~~~~~~y~k~Gf~~~~ 130 (147)
-++..+.+++.+- .|.....|++++||+++.
T Consensus 112 aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~ 148 (238)
T COG3473 112 ALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVD 148 (238)
T ss_pred HHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEE
Confidence 3344577776653 488999999999999843
No 154
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=58.93 E-value=20 Score=19.88 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCe
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFV 127 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~ 127 (147)
|-.++..+.+.++..|........++...+++++.|+.
T Consensus 55 g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~~gl~ 92 (99)
T cd07043 55 GLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLELTGLD 92 (99)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCcc
Confidence 55677778888887786655555688999999999976
No 155
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.62 E-value=7 Score=22.73 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=13.8
Q ss_pred cchhhcchhcCCeeCCC
Q 048638 115 PRVLGFYRPLGFVADPG 131 (147)
Q Consensus 115 ~~~~~~y~k~Gf~~~~~ 131 (147)
..+.+||+.+||++...
T Consensus 13 ~~s~~FY~~LGf~~~~~ 29 (113)
T cd08356 13 AESKQFYQALGFELEWE 29 (113)
T ss_pred HHHHHHHHHhCCeeEec
Confidence 67899999999997544
No 156
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=57.96 E-value=42 Score=20.70 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred ceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHc-CcceEEee---cCcchhhcch
Q 048638 47 SLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEK-GVCNIALY---SEPRVLGFYR 122 (147)
Q Consensus 47 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~i~~~---~n~~~~~~y~ 122 (147)
..++.+. +.+.++|+..+..-.+...... -+-+|++|| ++...-....+|..+. .+..+... +.+-.+-..+
T Consensus 38 ~~Y~gVy-eg~~l~Gi~~v~~i~~~~vecH-a~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 38 QLYLGVY-EGGQLGGIVYVEEIQPSVVECH-AMYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred cEEEEEE-eceEEEEEEEEEEEeeeeEEEE-eeeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 3444443 7778888887774444444444 447899999 7777766777777665 33332221 2333344445
Q ss_pred hcCCee
Q 048638 123 PLGFVA 128 (147)
Q Consensus 123 k~Gf~~ 128 (147)
=+|-+.
T Consensus 114 llg~~R 119 (151)
T PF11039_consen 114 LLGARR 119 (151)
T ss_pred hhCCce
Confidence 555554
No 157
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=56.92 E-value=16 Score=21.33 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|-.++..+.+.++.+|...+.+..++...+.+++.||..
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~~~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVGLNPDVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCh
Confidence 455777888888888888777777888899999999873
No 158
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=56.82 E-value=44 Score=23.37 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=42.6
Q ss_pred cCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCc
Q 048638 55 KTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGI 133 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (147)
.++-+|++...... ...+++-...|+.+ ..++..+.+++...+...+.....+....+|+..||.....+.
T Consensus 30 ~~~~~i~y~~~~~~---~~~~~~Pig~~~~~-----~~~i~~f~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~~~~~g~ 100 (299)
T PF09924_consen 30 EGDGLIAYRVRGGG---AVVLGDPIGAPEDR-----PELIEEFLEFADRNGWKPIFYGVSEEFLELLEELGFESNRDGE 100 (299)
T ss_dssp ETTEEE-EEEEETT---EEEEE--EE-SS-H-----HHHHHHHHHHHHHCTS--EEEEE-HHHHHHHHHHSEEE-GGG-
T ss_pred cCCEEEEEEEECCe---EEEEEcCccCcHHH-----HHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHcCCeeecCCc
Confidence 45556666433322 22233322345444 7899999999999998888877778888999999988766554
No 159
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=54.57 E-value=5.8 Score=20.91 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=10.1
Q ss_pred ECcCccCCChHHHH
Q 048638 80 VDPSYQGMGLGKAV 93 (147)
Q Consensus 80 v~~~~rg~Gig~~l 93 (147)
=+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 36888888877654
No 160
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=54.15 E-value=30 Score=19.47 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|-.++..+...++..|........++...+.+.+.|+..
T Consensus 58 ~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~ 96 (107)
T cd07042 58 AAEALEELVKDLRKRGVELYLAGLNPQVRELLERAGLLD 96 (107)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCcHH
Confidence 455666667777777766666667888899999999874
No 161
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=54.06 E-value=1.3e+02 Score=25.79 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCC
Q 048638 91 KAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGG 132 (147)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~ 132 (147)
..++....++|+..|...++..+.+.....|.+.||....-|
T Consensus 298 ~~~i~~F~~~a~~~g~~p~fy~vse~~~~~~~~~G~~~lklG 339 (1094)
T PRK02983 298 PQAIDAWLALARTYGWAPAVMGASEAGARAYREAGLSALELG 339 (1094)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHcCCcEEEec
Confidence 678999999999999888888887888889999999874443
No 162
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=53.25 E-value=31 Score=19.54 Aligned_cols=39 Identities=15% Similarity=-0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|-.++..+.+.+++.|.+......++.....+++.|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTGISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHhCchh
Confidence 455667777777777866666667888899999999864
No 163
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=53.02 E-value=32 Score=19.61 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 91 KAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
-.++..+.+.+++.|.+......++...+.+++.|+..
T Consensus 57 i~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 94 (106)
T TIGR02886 57 LGVILGRYKKIKNEGGEVIVCNVSPAVKRLFELSGLFK 94 (106)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCce
Confidence 34555567777777877776677899999999999873
No 164
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=52.90 E-value=8.5 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=15.3
Q ss_pred eEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCCh
Q 048638 48 LLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGL 89 (147)
Q Consensus 48 ~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gi 89 (147)
..|+. ++|.+||-+.+..-...--.++.-.+..+|||||+
T Consensus 317 vPF~l--ehGQ~vgrLvyE~m~~~P~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 317 VPFIL--EHGQIVGRLVYERMAERPERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp S-EEE--ETT-EEEEEEEEEBSS----TTSS-----------
T ss_pred CCeee--eCCcEEEEEEehhhccCccccccccccccchhhhh
Confidence 34555 58999999988743322233555668899999996
No 165
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=52.03 E-value=25 Score=20.01 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|-.++..+.+.+++.|........++...+.++..|+..
T Consensus 60 gl~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~ 98 (108)
T TIGR00377 60 GLGVLLGRYKQVRRVGGQLVLVSVSPRVARLLDITGLLR 98 (108)
T ss_pred cHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHhChhh
Confidence 345566677777777766555556888899999999864
No 166
>PF05274 Baculo_E25: Occlusion-derived virus envelope protein E25; InterPro: IPR007938 This family consists of several nucleopolyhedrovirus occlusion-derived virus envelope E25 proteins. The N terminus of this protein is extremely hydrophobic, studies suggest that this defined hydrophobic domain is sufficient to direct the protein to induced membrane microvesicles within a baculovirus-infected cell nucleus and the viral envelope. In addition, movement of the protein into the nuclear envelope may initiate through cytoplasmic membranes, such as endoplasmic reticulum, and that transport into the nucleus may be mediated through the outer and inner nuclear membrane [].; GO: 0019031 viral envelope, 0042025 host cell nucleus
Probab=51.59 E-value=31 Score=22.15 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=28.5
Q ss_pred HHHcCcceEEeecCcchhhcchhcCCeeCCCCceeeE
Q 048638 101 LLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIRGMV 137 (147)
Q Consensus 101 ~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 137 (147)
+++..++.+++++|.+++...+..||.++.+.-.-++
T Consensus 139 LRdvsypi~VyT~Ns~aQl~LkEw~YtqiNd~~Tlfv 175 (182)
T PF05274_consen 139 LRDVSYPITVYTNNSSAQLKLKEWGYTQINDSGTLFV 175 (182)
T ss_pred hhcccccEEEEEcChHHhHHHHhcCceEEcccceEEE
Confidence 3344677788888999999999999998776555444
No 167
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=50.62 E-value=1.1e+02 Score=23.07 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred CccCCChHHHHHHHHHHHHHHcCcceEEee------------------cCcchhhcchhcCCee
Q 048638 83 SYQGMGLGKAVMERLIDELLEKGVCNIALY------------------SEPRVLGFYRPLGFVA 128 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~------------------~n~~~~~~y~k~Gf~~ 128 (147)
+|=++.+-..+++.+.+++++..+-.+.+. .|.+..+.+.++||+.
T Consensus 78 dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~~~~~~~~n~~~i~~l~~lG~k~ 141 (418)
T COG2348 78 DYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGGEIIENYNNLAIIKLLKDLGYKH 141 (418)
T ss_pred cccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCCccccCcchHHHHHHHHHhhhhh
Confidence 899999999999999999987655444432 1456678888999986
No 168
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.45 E-value=9.3 Score=22.42 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.3
Q ss_pred CcchhhcchhcCCeeC
Q 048638 114 EPRVLGFYRPLGFVAD 129 (147)
Q Consensus 114 n~~~~~~y~k~Gf~~~ 129 (147)
=..+..||+.+||+..
T Consensus 11 l~~s~~FY~~lGf~~~ 26 (124)
T cd09012 11 LEKSTAFYTALGFEFN 26 (124)
T ss_pred HHHHHHHHHHCCCEEc
Confidence 3688999999999864
No 169
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=48.41 E-value=24 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCcceEEeec-------CcchhhcchhcCCee
Q 048638 94 MERLIDELLEKGVCNIALYS-------EPRVLGFYRPLGFVA 128 (147)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~-------n~~~~~~y~k~Gf~~ 128 (147)
++.+++.++..|++++.+.. .....++++..||++
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev 84 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEV 84 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEE
Confidence 47888899999999988752 234456778999987
No 170
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=47.91 E-value=17 Score=24.13 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHHHc--CcceEEeecC---cchhhcchhcCCeeCC
Q 048638 88 GLGKAVMERLIDELLEK--GVCNIALYSE---PRVLGFYRPLGFVADP 130 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~--~~~~i~~~~n---~~~~~~y~k~Gf~~~~ 130 (147)
|+|..++..+++..... ....+.+..+ ...+++...+||....
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIID 121 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEE
Confidence 78999999999988765 4556777653 3457777899999733
No 171
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=47.73 E-value=7.4 Score=23.63 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.7
Q ss_pred cchhhcchhcCCeeC
Q 048638 115 PRVLGFYRPLGFVAD 129 (147)
Q Consensus 115 ~~~~~~y~k~Gf~~~ 129 (147)
.++.+||.++||+..
T Consensus 15 ~~S~~Fy~alGfk~N 29 (133)
T COG3607 15 EASKAFYTALGFKFN 29 (133)
T ss_pred HHHHHHHHHhCcccC
Confidence 567899999999973
No 172
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=46.08 E-value=1.1e+02 Score=22.14 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=29.3
Q ss_pred CceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCC
Q 048638 46 SSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGM 87 (147)
Q Consensus 46 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~ 87 (147)
.+..+++--.+|.+|+++.+... .-+|.++.|.|..|.-
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~---v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGV---IEEIYDVAVLPGVRRP 319 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCc---eeEEEEEEEecCCCCc
Confidence 35556654468999999998744 4569999999998864
No 173
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=45.62 E-value=30 Score=15.39 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=14.6
Q ss_pred HHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 37 KIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
.....+.......+.+.+.+++++|.+..
T Consensus 13 ~~~~~~~~~~~~~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 13 EALELLREHGIRRLPVVDEEGRLVGIVTR 41 (49)
T ss_pred HHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence 33334433332233333356788888764
No 174
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=43.17 E-value=67 Score=18.66 Aligned_cols=35 Identities=6% Similarity=-0.094 Sum_probs=28.3
Q ss_pred ecCCceEEEEeEEEECcCccCCChHHHHHHHHHHH
Q 048638 66 TGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDE 100 (147)
Q Consensus 66 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 100 (147)
.+......++.-++|..+-++.|++..+.+.+.+.
T Consensus 27 ~~~~~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d 61 (98)
T cd04263 27 LPPSGEVATLATFTITKSGWLNNVADNIFTAIKKD 61 (98)
T ss_pred ecCCCCCEEEEEEEEccccccccHHHHHHHHHHhh
Confidence 33324468899999999999999999999888766
No 175
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=41.97 E-value=14 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.5
Q ss_pred CcchhhcchhcCCeeCC
Q 048638 114 EPRVLGFYRPLGFVADP 130 (147)
Q Consensus 114 n~~~~~~y~k~Gf~~~~ 130 (147)
=..+.+||+++||+...
T Consensus 13 l~~s~~FY~~lG~~~~~ 29 (120)
T cd08350 13 LDATEAFYARLGFSVGY 29 (120)
T ss_pred HHHHHHHHHHcCCEEEe
Confidence 36889999889998743
No 176
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=40.71 E-value=47 Score=21.79 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCCh
Q 048638 50 WIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGL 89 (147)
Q Consensus 50 ~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gi 89 (147)
+++.+++|+++|...+..... -.+.|+ ||+|+
T Consensus 165 viVv~~ng~~vGVg~a~~~~~-------~~in~~-rG~~v 196 (202)
T COG5270 165 VIVVSENGRVVGVGIAKKSYE-------ELINPE-RGTGV 196 (202)
T ss_pred EEEEecCCEEEEEEEEecCHH-------HhcCcc-cCccc
Confidence 333448899999888774433 135555 66654
No 177
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=40.59 E-value=72 Score=18.27 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=17.2
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+|+++|++...
T Consensus 85 ~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~ 115 (120)
T cd04641 85 RTIFDLIVKARVHRLVVVDENKRVEGIISLS 115 (120)
T ss_pred HHHHHHHHhcCccEEEEECCCCCEEEEEEHH
Confidence 3344444444333444444568999988643
No 178
>PF13466 STAS_2: STAS domain
Probab=40.17 E-value=60 Score=17.29 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 89 LGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 89 ig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
-|-+++-.+.+.++..|.+......++...++++..|+
T Consensus 42 agl~lL~~~~~~~~~~g~~~~l~~~~~~~~~ll~~~gl 79 (80)
T PF13466_consen 42 AGLQLLLAAARRARARGRQLRLTGPSPALRRLLELLGL 79 (80)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhCc
Confidence 34566666777777767554444467777777777765
No 179
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=39.96 E-value=67 Score=17.75 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=16.9
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+...+...+.+.+.+|+++|++..
T Consensus 72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 72 MDAARVMFRTGISKLPVVDENNNLVGIITN 101 (107)
T ss_pred HHHHHHHHHhCCCeEeEECCCCeEEEEEEH
Confidence 434444444333334444567899998864
No 180
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=38.31 E-value=73 Score=18.20 Aligned_cols=39 Identities=23% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|-.++..+.+.++..|.+.+.+..++...+.++..|+..
T Consensus 58 g~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 58 VARHLLRLARALRLLGARTILTGIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCh
Confidence 344666777777777866666667888889999988763
No 181
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=38.23 E-value=1e+02 Score=19.37 Aligned_cols=18 Identities=0% Similarity=0.144 Sum_probs=10.0
Q ss_pred eEEEEEccCCceEEEEEE
Q 048638 48 LLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 48 ~~~~~~~~~~~ivG~~~~ 65 (147)
.++++.+.+|+++-+..+
T Consensus 21 ~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 21 VFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEECCCCcEEEEEEE
Confidence 344555667777777766
No 182
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=37.96 E-value=73 Score=17.62 Aligned_cols=32 Identities=3% Similarity=-0.012 Sum_probs=17.9
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+...+...+.+.+.+++++|++...
T Consensus 13 ~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (109)
T cd04583 13 LAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLE 44 (109)
T ss_pred HHHHHHHHHHCCCceEEEEcCCCcEEEEEEHH
Confidence 34444444433333344444668999999754
No 183
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=37.70 E-value=81 Score=20.62 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHHHcCcceEEeecC-----cchhhcchhcCCeeC
Q 048638 86 GMGLGKAVMERLIDELLEKGVCNIALYSE-----PRVLGFYRPLGFVAD 129 (147)
Q Consensus 86 g~Gig~~l~~~~~~~~~~~~~~~i~~~~n-----~~~~~~y~k~Gf~~~ 129 (147)
+.-.-..+++.+.+.+++.|...+.+..+ ......++..||...
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~ 65 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEI 65 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhH
Confidence 33445689999999999999886766532 356788999999864
No 184
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=37.40 E-value=80 Score=17.89 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=18.9
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+.......+.+.+.+|+++|.+...
T Consensus 11 ~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~ 43 (114)
T cd04619 11 TLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKT 43 (114)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCCCEEEEEehH
Confidence 334444444433333444445788999999754
No 185
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=37.05 E-value=50 Score=16.47 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.1
Q ss_pred CccCCChHHHHHHHHHHHHHHcC
Q 048638 83 SYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 83 ~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
=||+.-+|..|.+.+-+...+..
T Consensus 5 lYR~stlG~aL~dtLDeli~~~~ 27 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQEGK 27 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHcchHHHHHHHHHHHHHHcCC
Confidence 48999999999999988876543
No 186
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=36.34 E-value=39 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=16.9
Q ss_pred ceEEeec--CcchhhcchhcCCeeCCC
Q 048638 107 CNIALYS--EPRVLGFYRPLGFVADPG 131 (147)
Q Consensus 107 ~~i~~~~--n~~~~~~y~k~Gf~~~~~ 131 (147)
..+.+.+ -..+.+||..+||++...
T Consensus 4 ~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 4 DHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 3444543 367899999999987543
No 187
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=35.99 E-value=13 Score=22.10 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.0
Q ss_pred ccCCChHHHHHHHHHHHHHHcCc
Q 048638 84 YQGMGLGKAVMERLIDELLEKGV 106 (147)
Q Consensus 84 ~rg~Gig~~l~~~~~~~~~~~~~ 106 (147)
.|++|+|.+|++.+.+..+..|+
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~Gy 50 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLGY 50 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT-
T ss_pred hcccchHHHHHHHHHHHhhhcCC
Confidence 47889999999999999887774
No 188
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=35.58 E-value=65 Score=19.04 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCcceEEeec-CcchhhcchhcCC
Q 048638 93 VMERLIDELLEKGVCNIALYS-EPRVLGFYRPLGF 126 (147)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~~-n~~~~~~y~k~Gf 126 (147)
++..+.+.+.+.|.+...+.+ +....+|++.+|=
T Consensus 70 ~i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~gG 104 (113)
T PF03465_consen 70 LIEELIELAEQSGAKVEIISSEHEEGEQLLKGFGG 104 (113)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCCc
Confidence 789999999999987777765 4556777788774
No 189
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=35.04 E-value=85 Score=17.52 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=17.0
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+...+...+.+.+.+++++|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 43 (112)
T cd04624 13 REAAKLMAEENVGSVVVVDPDERPIGIVTER 43 (112)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCEEEEeeHH
Confidence 3343343333333344455668999998754
No 190
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.95 E-value=94 Score=17.99 Aligned_cols=33 Identities=6% Similarity=-0.065 Sum_probs=18.6
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+.......+.+.+.+++++|++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 43 (128)
T cd04632 11 SVGKAINVLREHGISRLPVVDDNGKLTGIVTRH 43 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHH
Confidence 344444444443333444445678999998743
No 191
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=34.48 E-value=94 Score=17.86 Aligned_cols=33 Identities=3% Similarity=-0.075 Sum_probs=18.6
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+.......+.+.+.+|+++|.+...
T Consensus 76 ~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~ 108 (113)
T cd04597 76 PLREALNLMHEHNIRTLPVVDDDGTPAGIITLL 108 (113)
T ss_pred cHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 334444445444433444555678899988643
No 192
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=34.35 E-value=87 Score=17.41 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=17.6
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+.......+.+.+.+|+++|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 44 (110)
T cd04605 13 IKEAAKLMIEENINHLPVVDEDGRLVGIVTSW 44 (110)
T ss_pred HHHHHHHHHhCCCceEEEECCCCcEEEEEeHH
Confidence 34444444433333343444678999999754
No 193
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=34.33 E-value=88 Score=17.44 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=16.9
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+.+|+++|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 76 DDLLEEMRKERSHMAIVVDEYGGTAGLVTL 105 (111)
T ss_pred HHHHHHHHhcCCcEEEEEECCCCEEEEeEH
Confidence 334444444333334444467899998864
No 194
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=34.28 E-value=87 Score=17.38 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=17.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+|+++|.+...
T Consensus 76 ~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 106 (111)
T cd04611 76 YDARQLMREHGIRHLVVVDDDGELLGLLSQT 106 (111)
T ss_pred HHHHHHHHHcCCeEEEEECCCCcEEEEEEhH
Confidence 3344445444333444444668899988643
No 195
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=34.13 E-value=25 Score=20.22 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=12.9
Q ss_pred cchhhcchhcCCeeCC
Q 048638 115 PRVLGFYRPLGFVADP 130 (147)
Q Consensus 115 ~~~~~~y~k~Gf~~~~ 130 (147)
..+.+||..+||++..
T Consensus 15 ~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 15 DKAERFLTDFGLEVAA 30 (113)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 5788999889998743
No 196
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=33.64 E-value=88 Score=17.24 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+...+...+.+.+.+|+++|.+...
T Consensus 13 ~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~ 43 (106)
T cd04582 13 SDALGLMDDSDLRALTVVDADGQPLGFVTRR 43 (106)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCEEEEEeHH
Confidence 3343344333333344444678999999754
No 197
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=33.43 E-value=94 Score=17.52 Aligned_cols=33 Identities=6% Similarity=-0.077 Sum_probs=18.6
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+.......+++.+.+|+++|.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (115)
T cd04593 11 PLREAAEQLIESKHGSALVVDRDGGVVGIITLP 43 (115)
T ss_pred CHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHH
Confidence 344444444433333344445678999999754
No 198
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=33.26 E-value=2.1e+02 Score=21.45 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=46.0
Q ss_pred cCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 55 KTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 55 ~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
.+|++|+.......+. +....-..++|++=.-.-|-.|+-.+++++...|+..+-+.
T Consensus 279 ~G~~lvAV~~~lr~~~-t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~~~g~~~~Dfg 335 (406)
T COG5653 279 AGGRLVAVHGLLRQGG-TYHAWLGAIDPEFARASPGMLLFLDLIEWACGQGLARFDFG 335 (406)
T ss_pred eCCEEEEEEeeeccCC-EEEEEeeccCHHHhhcCchHHHHHHHHHHHhcCCCeEEeec
Confidence 6778888776664444 45566678999999999999999999999999998877765
No 199
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=32.86 E-value=72 Score=18.46 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.0
Q ss_pred cchhhcchh-cCCeeCCC
Q 048638 115 PRVLGFYRP-LGFVADPG 131 (147)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~ 131 (147)
..+.+||.. +||++...
T Consensus 14 ~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 14 DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred HHHHHHHHhccCceeccC
Confidence 578999966 89987543
No 200
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=32.50 E-value=73 Score=21.51 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=29.8
Q ss_pred eecCcCChHHHHHHHHHcCCCCCCHHHHH--HHhcc-CCceEEEEEccCCceEEEEE
Q 048638 11 RTISDLDINHLNSVFVAVGFPRRDPDKIR--VALEN-TSSLLWIEYEKTRRPVAFAR 64 (147)
Q Consensus 11 r~~~~~d~~~l~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~ivG~~~ 64 (147)
...+++++..+...+...+++..+.-..- ..+.. ....+|=+.+..|++|||..
T Consensus 20 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~G~~~~y~~~~~RimFPI~d~~G~vvgFgG 76 (218)
T TIGR00646 20 KNQSKSKYRCAMNYLKKRGFNLQDFLKVGGGLAYLGEKEWLNLPLYNFDGNLIGFLN 76 (218)
T ss_pred cccCchhHHHHHHHHHHcCCCHHHHHHcCCCEEecccCCEEEEEEECCCCCEEEEec
Confidence 34566777777777776666532211110 01122 22334445678899999985
No 201
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=32.48 E-value=1e+02 Score=17.61 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=17.3
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+++|+++|.+..
T Consensus 89 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 89 AELVPLLADGGHHHVPVVDEDRRLVGIVTQ 118 (124)
T ss_pred HHHHHHHHhcCCCceeEEcCCCCEEEEEEh
Confidence 444444544433344444468899998864
No 202
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=32.27 E-value=96 Score=17.29 Aligned_cols=31 Identities=10% Similarity=-0.089 Sum_probs=16.3
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|.+...
T Consensus 78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred HHHHHHHHHcCCCcccEECCCCCEEEEEEHH
Confidence 3333444433332333444568999988643
No 203
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=31.99 E-value=97 Score=17.24 Aligned_cols=32 Identities=0% Similarity=-0.044 Sum_probs=17.8
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
+.......+...+...+.+.+.+|+++|.+..
T Consensus 71 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~ 102 (108)
T cd04596 71 SVASVAHMMIWEGIEMLPVVDDNKKLLGIISR 102 (108)
T ss_pred CHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEH
Confidence 34444444443333344444467899998864
No 204
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.83 E-value=72 Score=18.97 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHHHcCcceEE
Q 048638 87 MGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
-+|...+++.+.+.++++|.++|.
T Consensus 4 ~si~~~iv~~v~~~a~~~~~~~V~ 27 (114)
T PRK03681 4 ITLCQRALELIEQQAAKHGAKRVT 27 (114)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 367889999999999988766543
No 205
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=78 Score=19.79 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=12.5
Q ss_pred EEEEEccCCceEEEEEE
Q 048638 49 LWIEYEKTRRPVAFARA 65 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~ 65 (147)
+.+..|++|++|||+.-
T Consensus 54 f~ly~de~g~Piaf~~W 70 (148)
T COG2994 54 FALYFDEHGRPIAFCTW 70 (148)
T ss_pred eEEEEcCCCCeeEEEEE
Confidence 34445689999999874
No 206
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.43 E-value=98 Score=17.29 Aligned_cols=32 Identities=9% Similarity=-0.099 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+...+...+.+.+.+++++|++...
T Consensus 12 ~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~ 43 (114)
T cd04629 12 VTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQ 43 (114)
T ss_pred HHHHHHHHHhcCCCCccEECCCCeEEEEeehH
Confidence 33344444333322333445678999999754
No 207
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=31.26 E-value=1e+02 Score=17.29 Aligned_cols=33 Identities=3% Similarity=-0.028 Sum_probs=19.0
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+.......+++.+.+++++|.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (113)
T cd04607 12 SILDALRKIDKNALRIVLVVDENGRLLGTVTDG 44 (113)
T ss_pred CHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcH
Confidence 334444444433333444555678999999754
No 208
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.24 E-value=1.1e+02 Score=17.68 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=16.3
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+.+++++|.+..
T Consensus 91 ~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 91 KEVITKLVANKVHRVWVVDEEGKPIGVITL 120 (126)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCEEEEEEH
Confidence 334444443333334444466899998864
No 209
>PRK01346 hypothetical protein; Provisional
Probab=31.04 E-value=2.2e+02 Score=20.96 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=40.9
Q ss_pred hHHHHHHHHHc-----CCCCCCHHHHHHHhccCC-------ceEEEEEccCCceEEEEEEecCCc-------eEEEEeE-
Q 048638 18 INHLNSVFVAV-----GFPRRDPDKIRVALENTS-------SLLWIEYEKTRRPVAFARATGDDV-------FNAIVWD- 77 (147)
Q Consensus 18 ~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ivG~~~~~~~~~-------~~~~i~~- 77 (147)
.+.+.++++.. +....++.+|...+.... ....++..++|++.|++.+..... ....+..
T Consensus 168 ~~~l~~~y~~~~~~~~G~~~R~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~y~~~~~~~~~~~~~~l~V~e~ 247 (411)
T PRK01346 168 RDLLPAVYERWRRARPGALSRPPAWWDDVLADRESRRGGGSPLRALVHPDDGEVDGYALYRVDDTWGFRGPDGTVEVEEL 247 (411)
T ss_pred HHHHHHHHHHhhccCCCcccCChHHHHHHhcCcccccCCCCccEEEEEcCCCcccEEEEEEEcCcccccCCCceEEEEEE
Confidence 46666776542 333446666765553321 122223334889999998874321 2344544
Q ss_pred EEECcCccCCChHHHHHHHHHHH
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDE 100 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~ 100 (147)
++.+|+.+ ..|+..+..+
T Consensus 248 ~~~~~~a~-----~~L~~fl~~~ 265 (411)
T PRK01346 248 VAATPAAY-----AALWRFLLSL 265 (411)
T ss_pred EeCCHHHH-----HHHHHHHhhC
Confidence 33345444 4555555544
No 210
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.75 E-value=1.1e+02 Score=17.29 Aligned_cols=31 Identities=0% Similarity=-0.007 Sum_probs=16.8
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|.+...
T Consensus 13 ~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (111)
T cd04603 13 REAIKMINELGARAVVVVDEENKVLGQVTLS 43 (111)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence 3333344333222344445678999999744
No 211
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=30.62 E-value=1.1e+02 Score=17.23 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=17.8
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+...+...+.+.+.+++++|.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (116)
T cd04643 12 LRHALLVLTKHGYSAIPVLDKEGKYVGTISLT 43 (116)
T ss_pred HHHHHHHHHHCCCceeeeECCCCcEEEEEeHH
Confidence 34444444433333344445678999998754
No 212
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=30.58 E-value=1e+02 Score=18.95 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEECcCccCCChHHHHHHHHHHHHHHc
Q 048638 77 DVVVDPSYQGMGLGKAVMERLIDELLEK 104 (147)
Q Consensus 77 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 104 (147)
.+..-..|||+|+....++-+-..+...
T Consensus 9 HLlCmq~y~GkGYS~~FveN~d~I~~rL 36 (135)
T COG3543 9 HLLCMQGYQGKGYSPAFVENYDAIAERL 36 (135)
T ss_pred hhheeeecccccCCHHHHHHHHHHHHHh
Confidence 3455668999999999998888887765
No 213
>PHA02087 hypothetical protein
Probab=30.34 E-value=95 Score=16.62 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=7.3
Q ss_pred eEEEeecCcCChHHHH
Q 048638 7 FILRRTISDLDINHLN 22 (147)
Q Consensus 7 ~~~ir~~~~~d~~~l~ 22 (147)
+..++--++++..++.
T Consensus 3 i~rvkfks~ehrk~fa 18 (83)
T PHA02087 3 IVRVKFKSPEHRKAFA 18 (83)
T ss_pred eEEEEcCCHHHHHHHH
Confidence 3344444555444443
No 214
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=30.28 E-value=15 Score=15.02 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=8.4
Q ss_pred eecCcCChHHHHHH
Q 048638 11 RTISDLDINHLNSV 24 (147)
Q Consensus 11 r~~~~~d~~~l~~l 24 (147)
-|++++|+.++..+
T Consensus 8 mPMSPddy~~l~~~ 21 (23)
T PF12162_consen 8 MPMSPDDYDELERM 21 (23)
T ss_dssp --S-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 37888888887665
No 215
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.06 E-value=1.1e+02 Score=17.21 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=17.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|.+...
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~ 109 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEA 109 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEecc
Confidence 3344444444444444454568999988654
No 216
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=29.73 E-value=1.1e+02 Score=17.05 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=19.1
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
+.......+...+...+.+.+.+++++|++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~ 43 (114)
T cd04613 11 PLNELLDVIAHSPENNFPVVDDDGRLVGIVSLD 43 (114)
T ss_pred cHHHHHHHHHhCCCcceeEECCCCCEEEEEEHH
Confidence 344455555443333455555668899998754
No 217
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=29.54 E-value=1.2e+02 Score=17.44 Aligned_cols=29 Identities=7% Similarity=-0.097 Sum_probs=15.9
Q ss_pred HHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 38 IRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
....+.......+.+.+.+++++|.+...
T Consensus 90 a~~~m~~~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 90 ALHLMHNEGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred HHHHHHHcCCceEEEECCCCcEEEEEeHH
Confidence 33333333333344445678999988653
No 218
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=29.11 E-value=1.3e+02 Score=17.94 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEeEEEECcCccCCChHHHHHHHHHHHH
Q 048638 73 AIVWDVVVDPSYQGMGLGKAVMERLIDEL 101 (147)
Q Consensus 73 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 101 (147)
.+...+.++|++..||--..|-..+...-
T Consensus 63 ~~~~~i~IDP~~~~KGC~~TL~HEL~H~W 91 (141)
T PHA02456 63 QFVGWIEIDPDYANKGCRDTLAHELNHAW 91 (141)
T ss_pred cceeEEEECCcccccchHHHHHHHHHHHH
Confidence 34566889999999998777766665443
No 219
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=29.07 E-value=1.7e+02 Score=19.04 Aligned_cols=66 Identities=11% Similarity=-0.166 Sum_probs=42.9
Q ss_pred HhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 41 ALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
..+.......-++ .++++||.+-...-+.-..-..++... .+-++..+-.+.++++..|+..+-+.
T Consensus 92 Lh~~G~aHSvEvw-~~~~LvGGlyGv~iG~~F~GESMFs~~-----~~ASKval~~L~~~L~~~g~~liD~Q 157 (173)
T PF03588_consen 92 LHELGYAHSVEVW-QGGELVGGLYGVAIGGVFFGESMFSRV-----SNASKVALVALVEHLRQCGFQLIDCQ 157 (173)
T ss_dssp HHHTTSEEEEEEE-ETTEEEEEEEEEEETTEEEEEEEEESS-----TTHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHcCeeEEEeee-cCCeeEEeeeCEEECCEEEeccccccC-----CChHHHHHHHHHHHHHHCCCcEEEec
Confidence 3344555666666 788899877655334333334555444 46789999999999999998777665
No 220
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=28.99 E-value=67 Score=18.16 Aligned_cols=18 Identities=33% Similarity=0.528 Sum_probs=13.7
Q ss_pred cchhhcchh-cCCeeCCCC
Q 048638 115 PRVLGFYRP-LGFVADPGG 132 (147)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~~ 132 (147)
..+.+||++ +||+.....
T Consensus 14 ~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 14 ERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred HHHHHHHHhccCcEEEeec
Confidence 678899987 999875443
No 221
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=28.84 E-value=1.3e+02 Score=17.84 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=18.0
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+.......+.+.+.+++++|.+...
T Consensus 12 ~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~ 43 (135)
T cd04621 12 LLHVVDEMEKNGVGRVIVVDDNGKPVGVITYR 43 (135)
T ss_pred HHHHHHHHHHcCCCcceEECCCCCEEEEEeHH
Confidence 33344444433333344445678999999754
No 222
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=28.81 E-value=1.1e+02 Score=18.39 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHcCcceEE---ee------cCcchhhcc
Q 048638 88 GLGKAVMERLIDELLEKGVCNIA---LY------SEPRVLGFY 121 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~---~~------~n~~~~~~y 121 (147)
.++.+++..+.+++++++.+++. +. .|+.+.+|-
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 57889999999999999876543 32 266666553
No 223
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=28.63 E-value=59 Score=18.59 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=15.2
Q ss_pred ceEEeec--Ccchhhcchh-cCCeeCC
Q 048638 107 CNIALYS--EPRVLGFYRP-LGFVADP 130 (147)
Q Consensus 107 ~~i~~~~--n~~~~~~y~k-~Gf~~~~ 130 (147)
..+.+.+ -..+.+||.+ +||++..
T Consensus 5 ~hv~l~v~d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 5 RGVGLGVPDLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred eEEEEecCCHHHHHHHHHhCcCcEEEE
Confidence 3444443 3577888876 8888643
No 224
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=28.62 E-value=1.1e+02 Score=16.98 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=17.6
Q ss_pred CHHHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 34 DPDKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
+.....+.+.......+.+.+.+++++|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 77 LAAEALELMEENKITALPVVDDNGRPVGVLHI 108 (114)
T ss_pred cHHHHHHHHHHcCCCEEEEECCCCCEEEEEEH
Confidence 33444444444433333344457899998864
No 225
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.55 E-value=1.3e+02 Score=17.47 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=17.4
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+++.+.+|+++|.+...
T Consensus 13 ~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (126)
T cd04640 13 DEALELMIKHGVRLLLVVDSDDNFIGVITAV 43 (126)
T ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEEHH
Confidence 3333444433333444444678999999854
No 226
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=28.53 E-value=1.4e+02 Score=17.93 Aligned_cols=18 Identities=0% Similarity=-0.208 Sum_probs=12.7
Q ss_pred EEEEEccCCceEEEEEEe
Q 048638 49 LWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~ 66 (147)
.+.+.+.+|+++|.+...
T Consensus 26 ~~~VvD~~g~l~Givt~~ 43 (133)
T cd04592 26 CVLVVDSDDFLEGILTLG 43 (133)
T ss_pred EEEEECCCCeEEEEEEHH
Confidence 344445678999999865
No 227
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=28.50 E-value=48 Score=20.27 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEECcCccCCChHHHHHHHHHH
Q 048638 78 VVVDPSYQGMGLGKAVMERLID 99 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~ 99 (147)
+-++|+++|.-|.+.|.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 5589999999999999988876
No 228
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=28.45 E-value=1.2e+02 Score=17.10 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=16.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+.+|+++|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 87 EEAAELMLERKISGLPVVDDQGRLVGIITE 116 (122)
T ss_pred HHHHHHHHHcCCCceeEECCCCcEEEEEEH
Confidence 444444444333334344456899998864
No 229
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=28.08 E-value=1.1e+02 Score=16.78 Aligned_cols=32 Identities=3% Similarity=-0.132 Sum_probs=18.3
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+...+...+.+.+.+|+++|.+...
T Consensus 12 i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (96)
T cd04614 12 LPVAVRIMELANVKALPVLDDDGKLSGIITER 43 (96)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCEEEEEEHH
Confidence 33344444433333444555678999998755
No 230
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=27.83 E-value=32 Score=19.53 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.4
Q ss_pred Ccchhhcchh-cCCeeC
Q 048638 114 EPRVLGFYRP-LGFVAD 129 (147)
Q Consensus 114 n~~~~~~y~k-~Gf~~~ 129 (147)
-..+..||++ +||+..
T Consensus 11 l~~s~~FY~~~lG~~~~ 27 (112)
T cd07238 11 PEAAAAFYADVLGLDVV 27 (112)
T ss_pred HHHHHHHHHHhcCceEE
Confidence 3577899986 999864
No 231
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.83 E-value=1.2e+02 Score=17.16 Aligned_cols=31 Identities=3% Similarity=-0.181 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
.......+.......+.+.+.+|+++|.+..
T Consensus 86 l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~ 116 (122)
T cd04635 86 IATAVELMLEHDIGRLPVVNEKDQLVGIVDR 116 (122)
T ss_pred HHHHHHHHHHcCCCeeeEEcCCCcEEEEEEh
Confidence 3444444444443333344466899998864
No 232
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=27.73 E-value=1.2e+02 Score=16.90 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=17.2
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+...+...+.+.+++++++|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 103 (109)
T cd04606 73 EEVARLFEKYDLLALPVVDEEGRLVGIITVD 103 (109)
T ss_pred HHHHHHHHHcCCceeeeECCCCcEEEEEEhH
Confidence 3344444433333344444678999988653
No 233
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=27.65 E-value=1e+02 Score=16.60 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=13.6
Q ss_pred eEEEEEccCCceEEEEEEe
Q 048638 48 LLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 48 ~~~~~~~~~~~ivG~~~~~ 66 (147)
..++-.+.+|+++|+=...
T Consensus 31 di~Idide~GkV~GiEi~~ 49 (69)
T COG5428 31 DILIDIDENGKVIGIEIWN 49 (69)
T ss_pred cEEEEecCCCcEEEEEEEc
Confidence 3566667889999976544
No 234
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.63 E-value=1.2e+02 Score=16.83 Aligned_cols=31 Identities=6% Similarity=-0.028 Sum_probs=17.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+...+...+.+.+.+++++|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~ 43 (113)
T cd04623 13 AEAAKLMAEKNIGAVVVVDDGGRLVGIFSER 43 (113)
T ss_pred HHHHHHHHHcCCCeEEEECCCCCEEEEEehH
Confidence 3343344333333444554668999999864
No 235
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.55 E-value=1.3e+02 Score=17.11 Aligned_cols=30 Identities=3% Similarity=-0.124 Sum_probs=16.7
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+++.+.+|+++|.+..
T Consensus 90 ~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~ 119 (125)
T cd04631 90 KDAAELMLEKRVGGLPVVDDDGKLVGIVTE 119 (125)
T ss_pred HHHHHHHHHcCCceEEEEcCCCcEEEEEEH
Confidence 334444444434344444355899998864
No 236
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.17 E-value=1e+02 Score=18.62 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHHHHcCcceEE
Q 048638 87 MGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
-+|...+++.+.+.+++.|.++|.
T Consensus 4 ~si~~~il~~v~~~a~~~~~~rV~ 27 (124)
T PRK00762 4 LSMACEIVEAVIDTAEKNNATEVT 27 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 367888999999999888766644
No 237
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=1.8e+02 Score=22.72 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCC
Q 048638 90 GKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGG 132 (147)
Q Consensus 90 g~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~ 132 (147)
-.+|+....+.|+.+|...++....+...++|..+|+....-|
T Consensus 271 ~~eli~~F~e~A~~~G~r~~fy~vs~~~~p~y~d~Gl~~~klG 313 (538)
T COG2898 271 WPELIWAFLELADRHGWRPVFYGVSEEGAPLYADAGLRALKLG 313 (538)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEeCccccHHHHhcCcceeecc
Confidence 5899999999999999998888877888999999999874433
No 238
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=25.86 E-value=1.3e+02 Score=16.70 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=17.4
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+.......+.+.+.+|+++|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 106 (111)
T cd04639 75 LDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLE 106 (111)
T ss_pred HHHHHHHHHhcCCceeeEEcCCCCEEEEEEHH
Confidence 34444444444333344444558999988643
No 239
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=25.72 E-value=1.3e+02 Score=16.66 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=16.8
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+...+...+.+.+.+|+++|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~ 104 (110)
T cd04588 75 YDAIRLMNKHNVGRLIVTDDEGRPVGIITR 104 (110)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCEEEEEEh
Confidence 344444444444344444456889998764
No 240
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.71 E-value=1e+02 Score=18.29 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.1
Q ss_pred CChHHHHHHHHHHHHHHcCcceE
Q 048638 87 MGLGKAVMERLIDELLEKGVCNI 109 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i 109 (147)
-+|...+++.+.+.+++.+.++|
T Consensus 4 ~sia~~iv~~v~~~a~~~~~~~V 26 (115)
T TIGR00100 4 LSLAEAMLEIVEEQAEKHQAKKV 26 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeE
Confidence 36788899999999888776653
No 241
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.67 E-value=34 Score=19.12 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.5
Q ss_pred cchhhcchh-cCCeeCC
Q 048638 115 PRVLGFYRP-LGFVADP 130 (147)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~ 130 (147)
..+.+||++ +||++..
T Consensus 7 ~~a~~FY~~~lg~~~~~ 23 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVF 23 (108)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 567889986 9998744
No 242
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=25.63 E-value=1.4e+02 Score=19.77 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 92 AVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 92 ~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
.+...+.+.+++.|.....|..+.--..+...+||..
T Consensus 38 TiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ 74 (197)
T COG0529 38 TIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR 74 (197)
T ss_pred HHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh
Confidence 4555666667777988888886555577888899974
No 243
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=25.38 E-value=43 Score=18.51 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.5
Q ss_pred EEECcCccCCChHHHHHHHHHH
Q 048638 78 VVVDPSYQGMGLGKAVMERLID 99 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~ 99 (147)
+.++|+..|+.+.+.+.+.+..
T Consensus 50 iltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 50 ILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEECCCHHHHHHHHHHHHHhcc
Confidence 6799999999998888887754
No 244
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=25.29 E-value=2.6e+02 Score=20.00 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=32.7
Q ss_pred cCcCChHHHHHHHHHcCCCCC-CHHHHHHHhcc-CCceEEEEEccCCceEEEE
Q 048638 13 ISDLDINHLNSVFVAVGFPRR-DPDKIRVALEN-TSSLLWIEYEKTRRPVAFA 63 (147)
Q Consensus 13 ~~~~d~~~l~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~ 63 (147)
-++.|.+.+.+-|+..|.+.. .++-+...... +-.+-|++++.+|+++|..
T Consensus 13 W~~~~~~~Y~~~y~~yGGSv~tHPdVv~fl~~~~~~~~~f~~~~~~~~i~gA~ 65 (298)
T PRK15312 13 WQPSSFTLYREVFTQYGGSINMHPDIVDYFMKRHNWHFKFFHYKEDDKIKGAY 65 (298)
T ss_pred CccCCHHHHHHHHHHhCCccccCHHHHHHHHHHcCCCceEEEEecCCcEEEEE
Confidence 456788888888888877654 44444433332 2234456766889999874
No 245
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.10 E-value=1.1e+02 Score=18.14 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHHHHHHcCcceE
Q 048638 87 MGLGKAVMERLIDELLEKGVCNI 109 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i 109 (147)
-+|...+++.+.+.+++.|.+++
T Consensus 4 lsi~~~iv~~v~~~a~~~~~~rV 26 (113)
T PRK12380 4 LSLCQSAVEIIQRQAEQHDVKRV 26 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeE
Confidence 36788899999999988876543
No 246
>PHA02324 hypothetical protein
Probab=25.04 E-value=39 Score=16.17 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=5.9
Q ss_pred ECcCccCCC
Q 048638 80 VDPSYQGMG 88 (147)
Q Consensus 80 v~~~~rg~G 88 (147)
-...|||||
T Consensus 38 akK~YRGQG 46 (47)
T PHA02324 38 AKKPYRGQG 46 (47)
T ss_pred ccCcccCCC
Confidence 445677776
No 247
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=25.02 E-value=2.1e+02 Score=18.86 Aligned_cols=68 Identities=7% Similarity=-0.098 Sum_probs=44.2
Q ss_pred HHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 39 RVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
....+.+....+-++ .++++||.+-...-+.-..-..++ ++...-++..+-++.++++..|+..+-+.
T Consensus 90 ~~LH~~G~AHSvEvw-~~~~LvGGlYGv~iG~~F~GESMF-----s~~~nASKvAl~~L~~~L~~~g~~liDcQ 157 (185)
T TIGR00667 90 HRLHELGHAHSFEVW-QGDELVGGMYGIAQGGLFCGESMF-----SRMTNASKTALLVFCEHFIRHGGQLIDCQ 157 (185)
T ss_pred HHHHHhCceEEEEEE-ECCEEEEeeeeeeeCCeEEecccc-----ccCCChhHHHHHHHHHHHHHCCCcEEEEC
Confidence 334455556666677 788999977544333222222334 34457789999999999999998877654
No 248
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.93 E-value=1.1e+02 Score=22.16 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCee
Q 048638 88 GLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVA 128 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~ 128 (147)
|+| -|-..+.++++..|.+.+.++.+..-..+-+++|=..
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE
Confidence 566 6677778888888877777777777788888888654
No 249
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=24.89 E-value=1.2e+02 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.7
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcch
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRV 117 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~ 117 (147)
.-+.++|. +.|++..+++.+.+ .-..+++++|++.
T Consensus 281 d~v~lDPP--R~G~~~~~l~~l~~-----~~~ivYvsC~p~t 315 (353)
T TIGR02143 281 STIFVDPP--RAGLDPDTCKLVQA-----YERILYISCNPET 315 (353)
T ss_pred CEEEECCC--CCCCcHHHHHHHHc-----CCcEEEEEcCHHH
Confidence 56889999 48999999998865 1256777776543
No 250
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.62 E-value=1.5e+02 Score=16.86 Aligned_cols=30 Identities=3% Similarity=-0.127 Sum_probs=16.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+.+|+++|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 116 (122)
T cd04803 87 REAAEIMVENKIGCLPVVDDKGTLVGIITR 116 (122)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCEEEEEEH
Confidence 444444444333334444455889998864
No 251
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=24.59 E-value=48 Score=22.18 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeC
Q 048638 87 MGLGKAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVAD 129 (147)
Q Consensus 87 ~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~ 129 (147)
+|||..-.+.+.-++..+. ....+.-+.+|+.++|+...
T Consensus 121 KGIG~ETaDsILlYa~~rp----~FVvD~Yt~R~l~rlg~i~~ 159 (215)
T COG2231 121 KGIGKETADSILLYALDRP----VFVVDKYTRRLLSRLGGIEE 159 (215)
T ss_pred CCcchhhHHHHHHHHhcCc----ccchhHHHHHHHHHhccccc
Confidence 6999999999999986432 22334667899999999853
No 252
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.51 E-value=1.3e+02 Score=22.60 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=35.1
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEeecCcch----hhcchhcCCee
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALYSEPRV----LGFYRPLGFVA 128 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n~~~----~~~y~k~Gf~~ 128 (147)
..+.|+| -++|.+..+++.+.+... .+.+++++|+.. .+.+...||++
T Consensus 364 d~VvvDP--PR~G~~~~~lk~l~~~~p---~~IvYVSCNP~TlaRDl~~L~~~gy~i 415 (432)
T COG2265 364 DVVVVDP--PRAGADREVLKQLAKLKP---KRIVYVSCNPATLARDLAILASTGYEI 415 (432)
T ss_pred CEEEECC--CCCCCCHHHHHHHHhcCC---CcEEEEeCCHHHHHHHHHHHHhCCeEE
Confidence 4688999 467888888888777642 346778888765 56788888864
No 253
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=24.42 E-value=1.4e+02 Score=16.58 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=33.9
Q ss_pred CHHHHHHHhccCCceEEEEEcc-CCceEEEEEEecCCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 34 DPDKIRVALENTSSLLWIEYEK-TRRPVAFARATGDDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~~~ivG~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
+.......+.......+.+.+. +++++|.+....-..... -+.+.|+-- +..+.+.+.+.+.+.+-+.
T Consensus 11 ~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~---~~~v~~~~~--------l~~a~~~m~~~~~~~lpVv 79 (98)
T cd04618 11 PVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---LVSIHPERS--------LFDAALLLLKNKIHRLPVI 79 (98)
T ss_pred cHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee---eEEeCCCCc--------HHHHHHHHHHCCCCEeeEE
Confidence 3344444444443334444445 478999998653221110 334555432 3455555555666665543
No 254
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=23.87 E-value=95 Score=21.10 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=27.0
Q ss_pred cCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 82 PSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 82 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
|...|.--|..-+..+.++|.+.|++.++++
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~y 50 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLY 50 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5556777889999999999999999998886
No 255
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
Probab=23.86 E-value=3e+02 Score=20.25 Aligned_cols=104 Identities=17% Similarity=0.323 Sum_probs=57.0
Q ss_pred cceEEEeecCcCChHHHHHHHHHcCC--CCCCHHHHHHHhccCCceEEEEEcc--CCceEEEEEEe--------------
Q 048638 5 RGFILRRTISDLDINHLNSVFVAVGF--PRRDPDKIRVALENTSSLLWIEYEK--TRRPVAFARAT-------------- 66 (147)
Q Consensus 5 ~~~~~ir~~~~~d~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivG~~~~~-------------- 66 (147)
.++..+++++-+....+.+-.....- +...-..+...+...+..||..+.. -++++=++-+.
T Consensus 89 ~G~L~l~rItw~spa~iLekii~yEAVH~i~~w~DLkrRL~~~dRRcfaffHp~mP~ePLIfveVALt~~ia~sIq~il~ 168 (354)
T PF05292_consen 89 VGFLELRRITWSSPASILEKIIRYEAVHPIRSWDDLKRRLGPDDRRCFAFFHPAMPDEPLIFVEVALTDGIASSIQPILD 168 (354)
T ss_dssp GGGEEEEEE-TTS-HHHHHHHHHT--SS---SHHHHHHHCSTT-EEEEEEEETTCTT--SEEEEEEEESS----SHHHHS
T ss_pred ccceEEEeecCCChHHHHHHHHHHhhcccccCHHHHHHHhchhhhhhheeecCCCCCCCeeeeHHHhccchhhhhHHHhc
Confidence 46677777877776666665554422 2234566777777665666665522 25655444332
Q ss_pred -------cCCceEEEEeEEE-ECcCccCCChHHHHHHHHHHHHHHc--Ccce
Q 048638 67 -------GDDVFNAIVWDVV-VDPSYQGMGLGKAVMERLIDELLEK--GVCN 108 (147)
Q Consensus 67 -------~~~~~~~~i~~~~-v~~~~rg~Gig~~l~~~~~~~~~~~--~~~~ 108 (147)
.....++..+.|. +.+..+|-.+|..|++.+.+.+... +++.
T Consensus 169 ~~~~~~~~~~~~tAiFYSISn~q~GL~Gi~lGn~LIK~Vv~~L~~e~p~l~~ 220 (354)
T PF05292_consen 169 EDRPPIDEEEADTAIFYSISNTQKGLRGISLGNFLIKRVVEELQREFPNLKT 220 (354)
T ss_dssp ------------EEEEEEEEES-GGGTTS-HHHHHHHHHHHHHHHH-TT--E
T ss_pred CCCcccccCCCCEEEEEecccchhhhccCchHHHHHHHHHHHHHHhCccccc
Confidence 1112245455554 4588999999999999999999876 4443
No 256
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.72 E-value=96 Score=21.15 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=27.0
Q ss_pred cCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 82 PSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 82 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
|...|.--|..-+..+.++|.+.|++.++++
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~Y 57 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLY 57 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4556777899999999999999999998886
No 257
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.59 E-value=70 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.0
Q ss_pred cchhhcchh-cCCeeCCC
Q 048638 115 PRVLGFYRP-LGFVADPG 131 (147)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~ 131 (147)
..+.+||.+ +||++...
T Consensus 18 ~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 18 AGATRFATDILGLQVAER 35 (124)
T ss_pred HHHHHHHHhccCceeccC
Confidence 578899976 79987443
No 258
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=23.43 E-value=1.5e+02 Score=16.52 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=16.1
Q ss_pred HHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 38 IRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
....+.......+.+.+.+++++|++...
T Consensus 15 ~~~~~~~~~~~~~~vvd~~~~~~G~v~~~ 43 (113)
T cd04615 15 AVAEMYTSGSRALPVVDDKKRLVGIITRY 43 (113)
T ss_pred HHHHHHHcCCceEeEEcCCCCEEEEEEHH
Confidence 33334333333344444678999998754
No 259
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=23.39 E-value=3e+02 Score=20.13 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=42.2
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEecCCceEEEEeEEEEC-cCccCCChHHHHHHHHHHHHHHcCc
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARATGDDVFNAIVWDVVVD-PSYQGMGLGKAVMERLIDELLEKGV 106 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~-~~~rg~Gig~~l~~~~~~~~~~~~~ 106 (147)
.+.+...+...+.+.|++.|-++.+-|.+.-. ....+..+.|+ |.-.|+|=-+++=-+-++.-+.+++
T Consensus 129 te~l~~Ll~sd~kfgfivmDg~~tlfgtl~gn----trevLhkftVdlPkkhgrggqSalrfarlR~ekRhnY 197 (431)
T KOG0688|consen 129 TEALKELLESDNKFGFIVMDGNGTLFGTLQGN----TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNY 197 (431)
T ss_pred hHHHHHHHhhcccccEEEEcCCceeEEEeccc----hHhhhheeeecCccccCccchhHHhhhhhhhhhhccc
Confidence 46677788888888888875555555555322 23446667776 8888998555554444444444444
No 260
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.27 E-value=98 Score=18.95 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHHHHHHcCcceEE
Q 048638 86 GMGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 86 g~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
..++...|+..+.+.|++.|++.+.
T Consensus 38 hp~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 38 HPGLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CCCCCcCHHHHHHHHHHHCCCEEEE
Confidence 4455589999999999999988644
No 261
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.03 E-value=1.7e+02 Score=17.17 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCC
Q 048638 91 KAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGF 126 (147)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf 126 (147)
..+++ +.+.++++|.+.+.++.+....++..+.|+
T Consensus 57 ~e~i~-~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~ 91 (119)
T cd05017 57 EETLS-AVEQAKERGAKIVAITSGGKLLEMAREHGV 91 (119)
T ss_pred HHHHH-HHHHHHHCCCEEEEEeCCchHHHHHHHcCC
Confidence 44444 455778889888888866666666665664
No 262
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=22.96 E-value=1.5e+02 Score=16.34 Aligned_cols=31 Identities=3% Similarity=-0.079 Sum_probs=17.5
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 105 (110)
T cd04601 75 EEALELLHEHKIEKLPVVDDEGKLKGLITVK 105 (110)
T ss_pred HHHHHHHHHhCCCeeeEEcCCCCEEEEEEhh
Confidence 4444444444443344444678999988654
No 263
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.94 E-value=1.7e+02 Score=17.10 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=12.1
Q ss_pred EEEEEccCCceEEEEEEe
Q 048638 49 LWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~ 66 (147)
.+.+.+.+++++|++...
T Consensus 27 ~~~Vvd~~~~~~Gvi~~~ 44 (135)
T cd04586 27 GLPVVDDDGRLVGIVSEG 44 (135)
T ss_pred CceEECCCCCEEEEeeHH
Confidence 343445678999988754
No 264
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.91 E-value=51 Score=19.97 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=13.2
Q ss_pred ecCcchhhcch-hcCCee
Q 048638 112 YSEPRVLGFYR-PLGFVA 128 (147)
Q Consensus 112 ~~n~~~~~~y~-k~Gf~~ 128 (147)
..-..|++||+ .+||+.
T Consensus 11 ~DlerSi~FY~~vLG~~~ 28 (127)
T cd08358 11 GNRNKTIKFYREVLGMKV 28 (127)
T ss_pred CCHHHHHHHHHHhcCCEE
Confidence 34578999995 599986
No 265
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=22.74 E-value=1.6e+02 Score=16.58 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=16.2
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+.......+.+.+.+++++|.+..
T Consensus 79 ~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~ 108 (114)
T cd04602 79 EEANEILRESKKGKLPIVNDDGELVALVTR 108 (114)
T ss_pred HHHHHHHHhcCCCceeEECCCCeEEEEEEH
Confidence 334344444333333334467899998864
No 266
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=22.65 E-value=52 Score=18.42 Aligned_cols=15 Identities=53% Similarity=0.879 Sum_probs=11.4
Q ss_pred Ccchhhcchh-cCCee
Q 048638 114 EPRVLGFYRP-LGFVA 128 (147)
Q Consensus 114 n~~~~~~y~k-~Gf~~ 128 (147)
-..+.+||++ +||+.
T Consensus 9 ~~~s~~FY~~~lg~~~ 24 (112)
T cd08349 9 IERSLAFYRDVLGFEV 24 (112)
T ss_pred HHHHHHHHHhccCeEE
Confidence 3577888887 88886
No 267
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.64 E-value=1.2e+02 Score=17.86 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCcceEEeecCcchhhcchh
Q 048638 94 MERLIDELLEKGVCNIALYSEPRVLGFYRP 123 (147)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k 123 (147)
.-.+++.+++.|++.+.+.+|+.+...+.+
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~ 43 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVD 43 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHH
T ss_pred HHHHHHHHHHhCCcceeccCchhccccccc
Confidence 445667777789999999987766555443
No 268
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=22.61 E-value=1.6e+02 Score=16.61 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=12.3
Q ss_pred EEEEEccCCceEEEEEEe
Q 048638 49 LWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 49 ~~~~~~~~~~ivG~~~~~ 66 (147)
.+.+.+.+++++|.+...
T Consensus 26 ~~~V~d~~~~~~G~v~~~ 43 (121)
T cd04584 26 HLPVVDEEGRLVGIVTDR 43 (121)
T ss_pred cccEECCCCcEEEEEEHH
Confidence 344444668999999754
No 269
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.53 E-value=1.6e+02 Score=16.68 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=16.3
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEE
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
......+...+...+.+.+.+++++|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~ 116 (122)
T cd04637 87 DEASKLLLENSISCLPVVDENGQLIGIITW 116 (122)
T ss_pred HHHHHHHHHcCCCeEeEECCCCCEEEEEEH
Confidence 334444443333333344466899998864
No 270
>COG2428 Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=1.3e+02 Score=19.54 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCcceEEeecCcchhhcchhcCCeeCCCCcee
Q 048638 91 KAVMERLIDELLEKGVCNIALYSEPRVLGFYRPLGFVADPGGIRG 135 (147)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~i~~~~n~~~~~~y~k~Gf~~~~~~~~~ 135 (147)
.+|+-...+.++..|.+.+++.+.+.-...+.|.|+..++.....
T Consensus 14 eWlllEy~e~a~~~G~~~~vtna~pe~p~vlak~g~~~i~e~~~~ 58 (196)
T COG2428 14 EWLLLEYKEVARWWGDEFIVTNAKPEEPEVLAKIGLSGIPESITR 58 (196)
T ss_pred HHHHHHHHHHHHHhchheeeecCCcchhHHHHHhccccCchhHhh
Confidence 567777778888889888887765555677888887655544433
No 271
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=22.23 E-value=1.5e+02 Score=16.30 Aligned_cols=31 Identities=6% Similarity=-0.040 Sum_probs=17.0
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|++...
T Consensus 76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~ 106 (111)
T cd04612 76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRS 106 (111)
T ss_pred HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHH
Confidence 3344444443333344444568999998653
No 272
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=21.94 E-value=1.8e+02 Score=16.93 Aligned_cols=31 Identities=3% Similarity=-0.073 Sum_probs=17.2
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+++++|.+...
T Consensus 14 ~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~ 44 (124)
T cd04608 14 AEAIEILKEKGFDQLPVVDESGKILGMVTLG 44 (124)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence 3333344333333344445678999998755
No 273
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.77 E-value=76 Score=18.11 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.3
Q ss_pred Ccchhhcchh-cCCeeC
Q 048638 114 EPRVLGFYRP-LGFVAD 129 (147)
Q Consensus 114 n~~~~~~y~k-~Gf~~~ 129 (147)
-..+.+||++ +||+..
T Consensus 12 ~~~a~~FY~~~lG~~~~ 28 (126)
T cd08346 12 AQETVDFYTDVLGLRLV 28 (126)
T ss_pred hhHhHHHHHHccCCEEe
Confidence 3678999975 899874
No 274
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.50 E-value=2e+02 Score=19.01 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=26.7
Q ss_pred eEEEECcCccCCChHHHHHHHHHHHHHHcCcceEEe
Q 048638 76 WDVVVDPSYQGMGLGKAVMERLIDELLEKGVCNIAL 111 (147)
Q Consensus 76 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~ 111 (147)
..+-|+|+|+|..+.++---.+.+...+.-+....+
T Consensus 143 phFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l 178 (196)
T PF04555_consen 143 PHFPVDPEFKGASYLKRYEILCERLVQERLYTAACL 178 (196)
T ss_pred CCCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEE
Confidence 348899999999999987777777666665554443
No 275
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.36 E-value=1.1e+02 Score=18.03 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHHHcCcceEE
Q 048638 88 GLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
+|...+++.+.+.+++++.+++.
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV~ 27 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKVT 27 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 57888999999999987765543
No 276
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=2.4e+02 Score=18.20 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=38.0
Q ss_pred cCCceEEEEEEec-CCceEEEEeEEEECcCccCCChHHHHHHHHHHHHHHcC
Q 048638 55 KTRRPVAFARATG-DDVFNAIVWDVVVDPSYQGMGLGKAVMERLIDELLEKG 105 (147)
Q Consensus 55 ~~~~ivG~~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 105 (147)
.+|+.++-+.+.. ..-...++.-+.|.|-++|.-+-..+.+.+.+.+..-+
T Consensus 36 e~ge~l~~l~vF~GR~yytPW~Eifnv~Pv~~gs~~E~~l~~~l~~~lspg~ 87 (192)
T COG4353 36 ENGEQLGKLKVFKGRDYYTPWLEIFNVNPVFRGSELEVKLYKVLYNFLSPGG 87 (192)
T ss_pred cCCceeeEEEEEcCCccccchhhccccCCccCCCHHHHHHHHHHHHhcCCCC
Confidence 4588888777662 22334566767799999999999999998888875433
No 277
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.27 E-value=1.7e+02 Score=16.38 Aligned_cols=26 Identities=4% Similarity=-0.010 Sum_probs=14.7
Q ss_pred HHhccCCceEEEEEccCCceEEEEEE
Q 048638 40 VALENTSSLLWIEYEKTRRPVAFARA 65 (147)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~ivG~~~~ 65 (147)
..+.......+.+.+.+|+++|.+..
T Consensus 84 ~~~~~~~~~~~pVvd~~~~~~Gvit~ 109 (115)
T cd04620 84 SLFRQHQIRHLPVLDDQGQLIGLVTA 109 (115)
T ss_pred HHHHHhCCceEEEEcCCCCEEEEEEh
Confidence 33444333334444567899998754
No 278
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=21.16 E-value=1e+02 Score=22.36 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=17.5
Q ss_pred ECcCccCCChHHHHHHHHHH
Q 048638 80 VDPSYQGMGLGKAVMERLID 99 (147)
Q Consensus 80 v~~~~rg~Gig~~l~~~~~~ 99 (147)
|.-.++++|+|...++++++
T Consensus 255 I~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccccccCcccHHHHHHHHh
Confidence 67789999999999999864
No 279
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.12 E-value=1.5e+02 Score=16.95 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=16.9
Q ss_pred cCcceEEeecCcchhhcchhcCCe
Q 048638 104 KGVCNIALYSEPRVLGFYRPLGFV 127 (147)
Q Consensus 104 ~~~~~i~~~~n~~~~~~y~k~Gf~ 127 (147)
.+...+++...+.....++..||+
T Consensus 78 ~~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 78 KGGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp TTSSEEEEES-HHHHHHHHHTTEE
T ss_pred CCCCEEEEEcCHHHHHHHHHcCCC
Confidence 356777777777778888888875
No 280
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=21.09 E-value=1.6e+02 Score=15.96 Aligned_cols=32 Identities=6% Similarity=-0.117 Sum_probs=18.2
Q ss_pred HHHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 35 PDKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
.......+.......+.+.+.+++++|.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~ 43 (113)
T cd02205 12 VAEALRLMLEHGISGLPVVDDDGRLVGIVTER 43 (113)
T ss_pred HHHHHHHHHhcCCceEEEECCCCCEEEEEeHH
Confidence 34444444443333444444668999999853
No 281
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.82 E-value=1.7e+02 Score=16.36 Aligned_cols=31 Identities=0% Similarity=-0.043 Sum_probs=16.9
Q ss_pred HHHHHHhccCCceEEEEEccC-CceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKT-RRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~ivG~~~~~ 66 (147)
......+...+...+++.+.+ ++++|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~ 44 (114)
T cd04630 13 AEALQLMKEHGVSSLVVEKRRESDAYGIVTMR 44 (114)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcEEEEEehH
Confidence 333344443333334444465 8999999765
No 282
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.75 E-value=1.5e+02 Score=17.70 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHHHcCcceEE
Q 048638 88 GLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 88 Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
+|...+++.+.+.+++.+.+++.
T Consensus 5 si~~~il~~v~~~a~~~~~~~V~ 27 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKIE 27 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEE
Confidence 57788889888888887665543
No 283
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=20.53 E-value=61 Score=20.72 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=21.2
Q ss_pred CcCccCCChHHHHHHHHHHHHHHcCcceEEeecC-cchhhcchhcCCeeC
Q 048638 81 DPSYQGMGLGKAVMERLIDELLEKGVCNIALYSE-PRVLGFYRPLGFVAD 129 (147)
Q Consensus 81 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~~n-~~~~~~y~k~Gf~~~ 129 (147)
.+++|.-|+|.++++. .|++.+.+-+| +.-..-.+.+|-+++
T Consensus 122 ~~d~R~ygigaqIL~d-------LGV~~~rLLtnnp~k~~~L~g~gleV~ 164 (169)
T PF00925_consen 122 PEDLRDYGIGAQILRD-------LGVKKMRLLTNNPRKYVALEGFGLEVV 164 (169)
T ss_dssp -S----THHHHHHHHH-------TT--SEEEE-S-HHHHHHHHHTT--EE
T ss_pred ccccccHHHHHHHHHH-------cCCCEEEECCCChhHHHHHhcCCCEEE
Confidence 4677777777776654 48888887765 665555667776653
No 284
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.53 E-value=1.2e+02 Score=20.55 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=26.8
Q ss_pred cCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 82 PSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 82 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
|...|.--|..-+..+.++|.+.|++.++++
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvy 51 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLY 51 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4556777889999999999999999998886
No 285
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=20.48 E-value=76 Score=17.98 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=18.6
Q ss_pred EEECcCccCCChHHHHHHHHHHHHHHcCcceEE
Q 048638 78 VVVDPSYQGMGLGKAVMERLIDELLEKGVCNIA 110 (147)
Q Consensus 78 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~i~ 110 (147)
++++|+-=|.-|+..+++.+....... ++++.
T Consensus 65 iatD~D~EGe~Ia~~i~~~~~~~~~~~-~~R~~ 96 (100)
T PF01751_consen 65 IATDPDREGELIAWEIIELLGKNNPKL-IKRVW 96 (100)
T ss_dssp EEC-SSHHHHHHHHHHHHHHHHHSHHH-TTEEE
T ss_pred ecCCCChHHHHHHHHHHHHHhHhCCCc-CCEEE
Confidence 567777777777766666666555433 34443
No 286
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.37 E-value=1.2e+02 Score=20.65 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.8
Q ss_pred cCccCCChHHHHHHHHHHHHHHcCcceEEee
Q 048638 82 PSYQGMGLGKAVMERLIDELLEKGVCNIALY 112 (147)
Q Consensus 82 ~~~rg~Gig~~l~~~~~~~~~~~~~~~i~~~ 112 (147)
|...|.--|..-+..+.++|.+.|++.++++
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvY 54 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAF 54 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4556777889999999999999999998886
No 287
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.35 E-value=1.7e+02 Score=16.60 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.0
Q ss_pred cCCChHHHHH--HHHHHHHHHcCcc
Q 048638 85 QGMGLGKAVM--ERLIDELLEKGVC 107 (147)
Q Consensus 85 rg~Gig~~l~--~~~~~~~~~~~~~ 107 (147)
-|.|+|+..+ ..+.+.+.++|+.
T Consensus 9 CgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 9 CGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CCCchhHHHHHHHHHHHHHHHCCCe
Confidence 4789988777 6666777777875
No 288
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.21 E-value=1.8e+02 Score=16.17 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=16.7
Q ss_pred HHHHHHhccCCceEEEEEccCCceEEEEEEe
Q 048638 36 DKIRVALENTSSLLWIEYEKTRRPVAFARAT 66 (147)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 66 (147)
......+.......+.+.+.+|+++|++...
T Consensus 13 ~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 43 (111)
T cd04626 13 REALHEMLKYNTNEIIVKDNEEKLKGVVTFT 43 (111)
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCEEEEEehH
Confidence 3343344332222344444678999988754
No 289
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.03 E-value=2e+02 Score=16.74 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=11.6
Q ss_pred EEEEccCCceEEEEEEe
Q 048638 50 WIEYEKTRRPVAFARAT 66 (147)
Q Consensus 50 ~~~~~~~~~ivG~~~~~ 66 (147)
+.+.+.+++++|++...
T Consensus 27 ~~V~d~~~~~~G~i~~~ 43 (132)
T cd04636 27 VPVVDNEGRVVGIVSEG 43 (132)
T ss_pred cceECCCCCEEEEEeHH
Confidence 33444678999998754
Done!