BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048639
(1139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/1132 (36%), Positives = 666/1132 (58%), Gaps = 35/1132 (3%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+G FD G++ T ++ +S I + IG+K+G F + ATFF G +I W+++L+
Sbjct: 155 EIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
I + P++ + + K +++ + +L ++A ++ E+ ++ I+TV AF G++ E++ +
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ +++ + +A+ + +G + + +AL W G +V +K + G+VL S
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRDV 262
+L GA ++ A+P+++ F A+ A +E+F++I KP I S+S G + + I GN++ +++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YPSR + ILKG +L + +G+ VALVG+SGCGKST + L+ R YDP +G + ID +
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
I+ ++++ LR+ IG VSQEP LF ++ +NI+ G D ++I A ANA+ FI +LP
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
Q+ T +G+RG QLSGGQKQRIAIARA+V+NP ILLLDEATSALD+ESE +VQ AL++A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN------- 495
+GRT I+IAHR+ST+ NAD+IA + G + E G H L++ Y +L Q
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIEL 633
Query: 496 ----LRPID--DSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTT 549
+ D D+ +S +S ++ S + + P + R+LS +E +
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPAS- 692
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFG-FFIITIGVAYYD--PQA-KQEVGW 605
F+RI LN E VVG A +G +P F F +GV P+ +Q
Sbjct: 693 -FWRI-LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
+SL F ++G+ S T LQ + FG GE LR ++ +LR +++WF+ P+N G+L
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725
T+R+ +D + VK R++VI Q I+++ I+SL+ W++ L+ A++P I G++
Sbjct: 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVV 870
Query: 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785
+ K G + + +E+ N RTV S E+ SL+ R++ K+
Sbjct: 871 EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTL 845
+ +G+ F+ + ++A A + A L+ ++ TF + + + ++ ++ +
Sbjct: 931 AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSF 990
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLN 905
P A + I+++ EI+ + + + ++G ++F + FNYP+RP + VL
Sbjct: 991 APDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965
SL+++ G +ALVG SG GKS+V+ LL RFYDP G + +DGK IK+ N++ LR+Q+G
Sbjct: 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 966 LVQQEPLLFSCSIRNNICYGNXXXXXXXX--XXXXKKANIHDFISSLPDGYDTVVGEKGC 1023
+V QEP+LF CSI NI YG+ K+ANIH FI SLPD Y+T VG+KG
Sbjct: 1111 IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083
QLSGGQKQRIAIAR L+++P I+LLDEATSALD ESE+V+ AL+ + +C
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTC------ 1223
Query: 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135
I +AHRL+T+ N+D+IVV+ G+V E G+H L+A+ +G+Y + +QA
Sbjct: 1224 ---IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQA 1271
Score = 327 bits (839), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/596 (33%), Positives = 322/596 (54%), Gaps = 34/596 (5%)
Query: 564 LRLVVGTVAAAFSGISKPL----FGFF---IITIG--------VAYYDPQA-----KQEV 603
L ++VGT+AA G++ PL FG ++G ++ D +A ++E+
Sbjct: 48 LYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEM 107
Query: 604 GWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAG 663
Y+ ++ +G L +Q F+ + + + +R+ + ++ EI WF+ +D G
Sbjct: 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVG 165
Query: 664 SLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGG 723
L +R+ D S + I D++ + Q +++ I+ W++ LV A+ P +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSA 225
Query: 724 LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSR 783
I AK F+ A+ + ++ E + IRTV +F ++ L++ +LE+ KR
Sbjct: 226 GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285
Query: 784 KESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELW 843
K++I + G + L ++A+A WY L+ K+ + + + + S+ +
Sbjct: 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQAS 345
Query: 844 TLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTV 903
I +A F+I+D K I+ + + I+G +EF+NI F+YPSR EV +
Sbjct: 346 PNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L +L+++ G VALVG SG GKS+ + L+ R YDP +G++ IDG+ I+ N+R LR
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 964 IGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGC 1023
IG+V QEP+LF+ +I NI YG K+AN +DFI LP +DT+VGE+G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083
QLSGGQKQRIAIAR L++ P I+LLDEATSALD ESE V+ +AL+ R
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE---------GR 576
Query: 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
TT I +AHRL+TV N+DVI D G +VE G+H L+ E +G+Y +L Q +GN
Sbjct: 577 TT-IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT-AGN 629
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1132 (36%), Positives = 665/1132 (58%), Gaps = 35/1132 (3%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+G FD G++ T ++ +S I + IG+K+G F + ATFF G +I W+++L+
Sbjct: 155 EIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
I + P++ + + K +++ + +L ++A ++ E+ ++ I+TV AF G++ E++ +
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ +++ + +A+ + +G + + +AL W G +V +K + G+VL S
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRDV 262
+L GA ++ A+P+++ F A+ A +E+F++I KP I S+S G + + I GN++ +++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YPSR + ILKG +L + +G+ VALVG+SGCGKST + L+ R YDP +G + ID +
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
I+ ++++ LR+ IG VSQEP LF ++ +NI+ G D ++I A ANA+ FI +LP
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
Q+ T +G+RG QLSGGQKQRIAIARA+V+NP ILLLDEATSALD+ESE +VQ AL++A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN------- 495
+GRT I+IAHR+ST+ NAD+IA + G + E G H L++ Y +L Q
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIEL 633
Query: 496 ----LRPID--DSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTT 549
+ D D+ +S +S ++ S + + P + R+LS +E +
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPAS- 692
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFG-FFIITIGVAYYD--PQA-KQEVGW 605
F+RI LN E VVG A +G +P F F +GV P+ +Q
Sbjct: 693 -FWRI-LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
+SL F ++G+ S T LQ + FG GE LR ++ +LR +++WF+ P+N G+L
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725
T+R+ +D + VK R++VI Q I+++ I+SL+ W++ L+ A++P I G++
Sbjct: 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVV 870
Query: 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785
+ K G + + +E+ N RTV S E+ SL+ R++ K+
Sbjct: 871 EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTL 845
+ +G+ F+ + ++A + A L+ ++ TF + + + ++ ++ +
Sbjct: 931 AHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSF 990
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLN 905
P A + I+++ EI+ + + + ++G ++F + FNYP+RP + VL
Sbjct: 991 APDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965
SL+++ G +ALVG SG GKS+V+ LL RFYDP G + +DGK IK+ N++ LR+Q+G
Sbjct: 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 966 LVQQEPLLFSCSIRNNICYGNXXXXXXXX--XXXXKKANIHDFISSLPDGYDTVVGEKGC 1023
+V QEP+LF CSI NI YG+ K+ANIH FI SLPD Y+T VG+KG
Sbjct: 1111 IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083
QLSGGQKQRIAIAR L+++P I+LLDEATSALD ESE+V+ AL+ + +C
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTC------ 1223
Query: 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135
I +AHRL+T+ N+D+IVV+ G+V E G+H L+A+ +G+Y + +QA
Sbjct: 1224 ---IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQA 1271
Score = 328 bits (840), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/596 (33%), Positives = 322/596 (54%), Gaps = 34/596 (5%)
Query: 564 LRLVVGTVAAAFSGISKPL----FGFF---IITIG--------VAYYDPQA-----KQEV 603
L ++VGT+AA G++ PL FG ++G ++ D +A ++E+
Sbjct: 48 LYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEM 107
Query: 604 GWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAG 663
Y+ ++ +G L +Q F+ + + + +R+ + ++ EI WF+ +D G
Sbjct: 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVG 165
Query: 664 SLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGG 723
L +R+ D S + I D++ + Q +++ I+ W++ LV A+ P +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSA 225
Query: 724 LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSR 783
I AK F+ A+ + ++ E + IRTV +F ++ L++ +LE+ KR
Sbjct: 226 GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285
Query: 784 KESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELW 843
K++I + G + L ++A+A WY L+ K+ + + + + S+ +
Sbjct: 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQAS 345
Query: 844 TLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTV 903
I +A F+I+D K I+ + + I+G +EF+NI F+YPSR EV +
Sbjct: 346 PNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L +L+++ G VALVG SG GKS+ + L+ R YDP +G++ IDG+ I+ N+R LR
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 964 IGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGC 1023
IG+V QEP+LF+ +I NI YG K+AN +DFI LP +DT+VGE+G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083
QLSGGQKQRIAIAR L++ P I+LLDEATSALD ESE V+ +AL+ R
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE---------GR 576
Query: 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
TT I +AHRL+TV N+DVI D G +VE G+H L+ E +G+Y +L Q +GN
Sbjct: 577 TT-IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT-AGN 629
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/1156 (35%), Positives = 627/1156 (54%), Gaps = 67/1156 (5%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+ FDT+ S G + T + ++ +++ G+K+G + F +G ++A W+++L+
Sbjct: 183 EISWFDTNHS-GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLV 241
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ V P+ + G K M+ + + L ++A ++E+TIS I+TV + G R E++ +
Sbjct: 242 MLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERY 301
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S +++ + L G+ G Q+ F +AL ++G V G++L S
Sbjct: 302 STAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSS 361
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRDV 262
++ G++AL A P + V A+ A I++V+ RKP I SSK G++ KI G+I + +V
Sbjct: 362 VMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENV 421
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F YPSRPD IL+G +L + AG+ VALVGSSGCGKST+ISL+ R+YD G I ID ++
Sbjct: 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
++D++L+ LRKN+ VSQEP+LF ++ +NI +G E++ A MANA FI LP
Sbjct: 482 VRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLP 541
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
+ Y+T +G RG QLSGGQKQRIAIARA+V+NP ILLLDEATSALD+ESE +VQ+AL++A
Sbjct: 542 NGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDS 502
+GRT I+IAHR+STI NAD+I ++GQV E G H +L+ Y L T Q DS
Sbjct: 602 KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDS 661
Query: 503 RTKASTVESTSTEQQISVVEQL----------------------------EEPEE--SKR 532
+ S +Q S E L +E EE K
Sbjct: 662 AAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKD 721
Query: 533 ELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFG-FFIITIG 591
LS + E + T F I + L L +G A G P + FF +
Sbjct: 722 ALSRLKQELEENNAQKTNLFEILYHARPHA-LSLFIGMSTATIGGFIYPTYSVFFTSFMN 780
Query: 592 VAYYDPQAKQEVG-WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRN 650
V +P G +++L F ++ L +F G+ E +LR L+ VL
Sbjct: 781 VFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQ 840
Query: 651 EIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710
I +F+ PQN +G +++R+ +D ++ I R S ++ + S++ ++ W+MAL
Sbjct: 841 HIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMAL 900
Query: 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE----EN 766
+ A++P G ++ + G + SA+ + + E+ N+RTV + E EN
Sbjct: 901 LIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYEN 960
Query: 767 ILQKAKISLEKTKRSSRKESIKYGVIQGFSL-CLWNIAH-----AVALWYTAVLIDKKQA 820
+K I KE+IK IQG S C ++ + A + ++ D
Sbjct: 961 FCEKLDI--------PHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTM 1012
Query: 821 TFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESG 880
+R +++ ++ + P A F +L + ++I+ + E
Sbjct: 1013 QPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKID-SLSLAGEKK 1071
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
++ G++ F+N++F YP RPE+ +L S +EPG +ALVGPSG GKS+V+ALL RFYD
Sbjct: 1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT 1131
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG--NXXXXXXXXXXXX 998
G I IDG IK N RSQI +V QEP LF CSI NI YG
Sbjct: 1132 LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ ANIH+FI+ LP+G++T VG++G QLSGGQKQRIAIAR L++ P I+LLDEATSALD E
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118
SE+V+ AL+ + +C I +AHRL TV+N+D I V+ G ++E G+H+
Sbjct: 1252 SEKVVQEALDRAR-EGRTC---------IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQ 1301
Query: 1119 LVAESQGVYSRLYQLQ 1134
L++E +G Y +L Q Q
Sbjct: 1302 LMSE-KGAYYKLTQKQ 1316
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 197/599 (32%), Positives = 308/599 (51%), Gaps = 38/599 (6%)
Query: 562 ELLRLVVGTVAAAFSGISKPLF---------------------GFFIITIGVAYYDPQAK 600
E L L +GT+ A +G PL G + G Y +
Sbjct: 73 EKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFE 132
Query: 601 QEVG--WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKP 658
+V +S A VG+++ T+ Y + V E+ LRR +LR EI+WF+
Sbjct: 133 HDVMNVVWSYAAMTVGMWAAGQITVTCYLY--VAEQMNNRLRREFVKSILRQEISWFDT- 189
Query: 659 QNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718
N +G+L +++ + VK D++ + Q +S + IV+ W++ LV AV P
Sbjct: 190 -NHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPI 248
Query: 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKT 778
+ G AKS F+ + + + E+ S+IRTV S L++ ++E+
Sbjct: 249 QALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308
Query: 779 KRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPS 838
K++ + + G+ G I+ A+A + + F D + + + +
Sbjct: 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMA 368
Query: 839 ITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSR 898
+ + + +A + +E+LDRK I+ + + +IKG I +N+ F YPSR
Sbjct: 369 LGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSR 428
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
P+V +L +L++ G VALVG SG GKS++++LLLR+YD +G I IDG +++ NL
Sbjct: 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLE 488
Query: 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
LR + +V QEP LF+C+I NI G K AN FI +LP+GY+T+V
Sbjct: 489 FLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLV 548
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCG 1078
G++G QLSGGQKQRIAIAR L++ P I+LLDEATSALDAESE ++ AL+
Sbjct: 549 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD---------- 598
Query: 1079 ELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
+ A T I +AHRL+T+ N+D+I+ G+VVE+G H L+A+ QG+Y L Q F+
Sbjct: 599 KAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFT 656
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 310 bits (794), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/484 (37%), Positives = 292/484 (60%), Gaps = 18/484 (3%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
EV FD TG++I +SS +++ ++ E L L + A G+ + ++
Sbjct: 109 EVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 167
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ VVP + +I Y + + ++ L++AT + E+ I ++TV AF E +EI+ +
Sbjct: 168 VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWV---GAVVVTAKRSTGGEVLAA 200
+ +D + ++R EA + G F + +++ V G +++ + T GE+ +
Sbjct: 228 ASKVDHVMQLARKEAFARA---GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSF 284
Query: 201 VMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEK-IDGNIDI 259
+M + I++ + + AG ++++++R+P++ ++ EK G ++
Sbjct: 285 LMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEF 344
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319
++V FAYP+RP+ I + FSLSIP+G + ALVG SG GKSTV+SL+ R YDP++G I +D
Sbjct: 345 KNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404
Query: 320 SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD------EQIYNASMMAN 373
+I+ L+ LR IG VSQEP LF+ S+ +NI G ADD E+I + +AN
Sbjct: 405 GHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYG---ADDPSSVTAEEIQRVAEVAN 461
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
A +FI P ++T +G++GV LSGGQKQRIAIARA++KNP ILLLDEATSALD+E+E L
Sbjct: 462 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFT 492
VQEAL+R M GRTV++IAHR+STI NA+M+AV++ G++TE G H LL + + Y +L
Sbjct: 522 VQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMN 581
Query: 493 MQNL 496
Q+
Sbjct: 582 KQSF 585
Score = 296 bits (757), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 192/585 (32%), Positives = 313/585 (53%), Gaps = 24/585 (4%)
Query: 560 ERELLRLVVG--TVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLF- 616
ER L VG T+++ S +S P F II V Y +P L L +F
Sbjct: 17 ERRRLAAAVGFLTMSSVIS-MSAPFFLGKIID--VIYTNPTVDYSDNLTRLCLGLSAVFL 73
Query: 617 -SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSM 675
+ ++ Y G++ + LR +L++ +LR E+A+F+K + G L +R+ SDT++
Sbjct: 74 CGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRT--GELINRLSSDTAL 131
Query: 676 VKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSG 735
+ +++ +S ++ + + + V +A +V+P I +I + + +
Sbjct: 132 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTK 191
Query: 736 DSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGF 795
+ + + L E N+RTV +F E ++K ++ + +RKE+ G
Sbjct: 192 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251
Query: 796 SLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVP-SITELWTLIPTVISAIT 854
+ N+ L+ +L+ T + + ++ +++ V SI L + ++ +
Sbjct: 252 TGLSGNLIVLSVLYKGGLLMGSAHMTVGE-LSSFLMYAFWVGISIGGLSSFYSELMKGLG 310
Query: 855 VLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPG 914
+E+L+R+ ++ + +G +EF+N+ F YP+RPEV + +FSL I G
Sbjct: 311 AGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370
Query: 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974
ALVGPSG+GKS+VL+LLLR YDP G I +DG I++ N LRS+IG V QEP+LF
Sbjct: 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430
Query: 975 SCSIRNNICYGNXXXXXXXXXXXXKKANIHD---FISSLPDGYDTVVGEKGCQLSGGQKQ 1031
SCSI NI YG + A + + FI + P G++TVVGEKG LSGGQKQ
Sbjct: 431 SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 490
Query: 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091
RIAIAR LLK P I+LLDEATSALDAE+E ++ AL+ L + RT + +AH
Sbjct: 491 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL---------MDGRTV-LVIAH 540
Query: 1092 RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
RL+T+ N++++ V+D+G++ E G H L+++ G+Y +L Q+F
Sbjct: 541 RLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSF 585
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 308 bits (789), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 289/481 (60%), Gaps = 12/481 (2%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
EV FD TG++I +SS +++ ++ E L L + A G+ + ++
Sbjct: 140 EVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 198
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ VVP + +I Y + + ++ L++AT + E+ I ++TV AF E +EI+ +
Sbjct: 199 VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 258
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWV---GAVVVTAKRSTGGEVLAA 200
+ +D + ++R EA + G F + +++ V G +++ + T GE+ +
Sbjct: 259 ASKVDHVMQLARKEAFARA---GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSF 315
Query: 201 VMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEK-IDGNIDI 259
+M + I++ + + AG ++++++R+P++ ++ EK G ++
Sbjct: 316 LMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEF 375
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319
++V FAYP+RP+ I + FSLSIP+G + ALVG SG GKSTV+SL+ R YDP++G I +D
Sbjct: 376 KNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 435
Query: 320 SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD---EQIYNASMMANAHS 376
+I+ L+ LR IG VSQEP LF+ S+ +NI G D E+I + +ANA +
Sbjct: 436 GHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 495
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
FI P ++T +G++GV LSGGQKQRIAIARA++KNP ILLLDEATSALD+E+E LVQE
Sbjct: 496 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 555
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTMQN 495
AL+R M GRTV++IAH +STI NA+M+AV++ G++TE G H LL + + Y +L Q+
Sbjct: 556 ALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
Query: 496 L 496
Sbjct: 616 F 616
Score = 293 bits (750), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 191/585 (32%), Positives = 312/585 (53%), Gaps = 24/585 (4%)
Query: 560 ERELLRLVVG--TVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLF- 616
ER L VG T+++ S +S P F II V Y +P L L +F
Sbjct: 48 ERRRLAAAVGFLTMSSVIS-MSAPFFLGKIID--VIYTNPTVDYSDNLTRLCLGLSAVFL 104
Query: 617 -SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSM 675
+ ++ Y G++ + LR +L++ +LR E+A+F+K + G L +R+ SDT++
Sbjct: 105 CGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRT--GELINRLSSDTAL 162
Query: 676 VKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSG 735
+ +++ +S ++ + + + V +A +V+P I +I + + +
Sbjct: 163 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTK 222
Query: 736 DSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGF 795
+ + + L E N+RTV +F E ++K ++ + +RKE+ G
Sbjct: 223 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 282
Query: 796 SLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVP-SITELWTLIPTVISAIT 854
+ N+ L+ +L+ T + + ++ +++ V SI L + ++ +
Sbjct: 283 TGLSGNLIVLSVLYKGGLLMGSAHMTVGE-LSSFLMYAFWVGISIGGLSSFYSELMKGLG 341
Query: 855 VLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPG 914
+E+L+R+ ++ + +G +EF+N+ F YP+RPEV + +FSL I G
Sbjct: 342 AGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 401
Query: 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974
ALVGPSG+GKS+VL+LLLR YDP G I +DG I++ N LRS+IG V QEP+LF
Sbjct: 402 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 461
Query: 975 SCSIRNNICYGNXXXXXXXXXXXXKKANIHD---FISSLPDGYDTVVGEKGCQLSGGQKQ 1031
SCSI NI YG + A + + FI + P G++TVVGEKG LSGGQKQ
Sbjct: 462 SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 521
Query: 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091
RIAIAR LLK P I+LLDEATSALDAE+E ++ AL+ L + RT + +AH
Sbjct: 522 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL---------MDGRTV-LVIAH 571
Query: 1092 RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
L+T+ N++++ V+D+G++ E G H L+++ G+Y +L Q+F
Sbjct: 572 HLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSF 616
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 276 bits (707), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/471 (36%), Positives = 255/471 (54%), Gaps = 5/471 (1%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
F + G+VI+ V + + +D I L + T + I +++L +
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
P ++ + R+ ++ + L+E + + + I V +F E +E K+F
Sbjct: 171 FPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN 230
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAV--MSIL 205
+ + +VT ++I VGA + + T G + A V + +L
Sbjct: 231 TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELL 290
Query: 206 FGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFA 265
FG + A+ Q+ A+ +FQ+I I + +E G IDI V F
Sbjct: 291 FGPLRRLVAS--FTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQ 348
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
Y + ILK +LSI G+ VA VG SG GKST+I+L+ RFYD ++G ILID NIKD
Sbjct: 349 YNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
SLR IG V Q+ LF+ ++ +NI +G A DE++ A+ MANAH FI LP Y
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
TE+G+RGV+LSGGQKQR++IAR + NPPIL+LDEATSALD ESE ++QEAL+ + R
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527
Query: 446 TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNL 496
T +++AHR+STI +AD I V+E+G + ETGTH L+ Y L+++QNL
Sbjct: 528 TTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL 578
Score = 251 bits (642), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/528 (33%), Positives = 275/528 (52%), Gaps = 47/528 (8%)
Query: 623 LQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKA-IIS 681
++ Y K + ++R+ LY + ++ N G + SR+++D K I++
Sbjct: 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFY--ANNQVGQVISRVINDVEQTKDFILT 137
Query: 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAH 741
M++ + CI+ I+IA + +D ++ L A + P + + + + + + + A
Sbjct: 138 GLMNIWLDCIT-IIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQAL 196
Query: 742 TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801
E E I V SF E+N +AK + +K + ++K+ +S N
Sbjct: 197 AEVQGFLHERVQGISVVKSFAIEDN---EAK-NFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFS--LTVPSITE-------LWTLIPTVISA 852
+ ++I G+ AY S +TV ++ L+ + ++++
Sbjct: 253 TVTDIG---PIIVI---------GVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 853 ITVLAPAFEILDRKTE-IEPDAPESSESG----RIK-GRIEFQNIKFNYPSRPEVTVLNN 906
T L +F +DR + I+ D + G IK GRI+ ++ F Y E +L +
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKD 359
Query: 907 FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966
+L IE G VA VG SG GKS+++ L+ RFYD G ILIDG IK++ LR+QIGL
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 967 VQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLS 1026
VQQ+ +LFS +++ NI G K AN HDFI +LP GYDT VGE+G +LS
Sbjct: 420 VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQ 1086
GGQKQR++IAR L P I++LDEATSALD ESE +I AL+ L+ RTT
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS---------KDRTTL 530
Query: 1087 ITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
I VAHRL+T+ ++D IVV++ G +VE G+H L+A+ QG Y LY +Q
Sbjct: 531 I-VAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 249 bits (637), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 270/532 (50%), Gaps = 59/532 (11%)
Query: 7 ILSWHPK---GNRVLMKIGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSF 63
+L W P G +L I V ++ +GKV+ M++ R G +G +S F
Sbjct: 63 VLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVV------MTMRRRLFGHMMGMPVSFF 116
Query: 64 -------------------ATFFSGVLIAVI---------------CCWEVSLLIFLVVP 89
A+ SG LI V+ W++S+++ ++ P
Sbjct: 117 DKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAP 176
Query: 90 MILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDK 149
++ + +KR +S + + T+ EQ + K V F G+ E K F ++
Sbjct: 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNR 236
Query: 150 QIIISRGEALIKGVGLG--MFQSVTFCCWALIIWVGAVVVTAKRSTGGE---VLAAVMSI 204
+ +G ++ + + Q + A +++ + T G V ++++++
Sbjct: 237 MRL--QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIAL 294
Query: 205 LFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKE-LEKIDGNIDIRDVC 263
+ +LT Q A F I Q K +GK +E+ G+++ R+V
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEK------DEGKRVIERATGDVEFRNVT 348
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
F YP R D L+ +L IPAGK VALVG SG GKST+ SL+ RFYD G+IL+D ++
Sbjct: 349 FTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDL 407
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA-DDEQIYNASMMANAHSFISQLP 382
++ L SLR + VSQ LF ++ +NI + EQI A+ MA A FI+++
Sbjct: 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
+ T +G+ GV LSGGQ+QRIAIARA++++ PIL+LDEATSALD+ESE+ +Q AL+
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ RT ++IAHR+STI AD I VVEDG + E GTH+ LL+ Y +L MQ
Sbjct: 528 KNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 175/541 (32%), Positives = 279/541 (51%), Gaps = 38/541 (7%)
Query: 605 WYSLAFSLVGLFSL--FTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDA 662
W L ++GL L T + Y V K + +RR L+ ++ +++F+K
Sbjct: 66 WMPLV--VIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QST 121
Query: 663 GSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG 722
G+L SRI D+ V + S + +V+ +SI+ I+ W+++++ + P I
Sbjct: 122 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIA 181
Query: 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSS 782
+ +K + S + + + + + V F +E ++ +K
Sbjct: 182 IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR----FDKVSNRM 237
Query: 783 RKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQI---FSLTVPSI 839
R + +K S + + ++AL + VL + D + A I FS + +
Sbjct: 238 RLQGMKMVSASSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALM 295
Query: 840 TELWTLIPTVISA-----ITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFN 894
L +L T ++A + F ILD +E E D + R G +EF+N+ F
Sbjct: 296 RPLKSL--TNVNAQFQRGMAACQTLFTILD--SEQEKDEGKRVIE-RATGDVEFRNVTFT 350
Query: 895 YPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954
YP R +V L N +L+I G VALVG SG+GKS++ +L+ RFYD +EG IL+DG ++E
Sbjct: 351 YPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLRE 409
Query: 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXX-XXXXKKANIHDFISSLPDG 1013
Y L LR+Q+ LV Q LF+ ++ NNI Y + A DFI+ + +G
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNG 469
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
DTV+GE G LSGGQ+QRIAIAR LL+ I++LDEATSALD ESER I +AL+
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD----- 524
Query: 1074 SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133
EL T + +AHRL+T+ +D IVV++ G +VE G+H+ L+ E +GVY++L+++
Sbjct: 525 -----ELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL-EHRGVYAQLHKM 578
Query: 1134 Q 1134
Q
Sbjct: 579 Q 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 234/425 (55%), Gaps = 16/425 (3%)
Query: 77 CWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGE 136
W++S+++ ++ P++ + +KR ++S + + T+ EQ + K V F G+
Sbjct: 164 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ 223
Query: 137 RSEIKSFSDCMDKQIIISRGEALIKGVGLG--MFQSVTFCCWALIIWVGAVVVTAKRSTG 194
E K F +K + +G ++ + + Q + A +++ + T
Sbjct: 224 EVETKRFDKVSNKMRL--QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTA 281
Query: 195 GE---VLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKE-L 250
G V +++++++ +LT Q A F I Q K +GK +
Sbjct: 282 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK------DEGKRVI 335
Query: 251 EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
++ G+++ R+V F YP R + L+ +L IPAGK VALVG SG GKST+ SL+ RFYD
Sbjct: 336 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA-DDEQIYNAS 369
G IL+D ++++ L SLR + VSQ LF ++ +NI + EQI A+
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 454
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
MA A FI+++ + T +G+ GV LSGGQ+QRIAIARA++++ PIL+LDEATSALD+E
Sbjct: 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 430 SEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489
SE+ +Q AL+ + RT ++IAHR+STI AD I VVEDG + E GTH LL Y +
Sbjct: 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 574
Query: 490 LFTMQ 494
L MQ
Sbjct: 575 LHKMQ 579
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 177/541 (32%), Positives = 279/541 (51%), Gaps = 38/541 (7%)
Query: 605 WYSLAFSLVGLFSL--FTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDA 662
W L ++GL L T + Y V K + +RR L+ ++ +A+F+K
Sbjct: 66 WMPLV--VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QST 121
Query: 663 GSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG 722
G+L SRI D+ V + S + +V+ +SI+ I+ W+++++ + P I
Sbjct: 122 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIA 181
Query: 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSS 782
+ +K + S + + + + + V F +E ++ +K
Sbjct: 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR----FDKVSNKM 237
Query: 783 RKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQI---FSLTVPSI 839
R + +K S + + ++AL + VL + D + A I FS + +
Sbjct: 238 RLQGMKMVSASSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALM 295
Query: 840 TELWTLIPTVISA-----ITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFN 894
L +L T ++A + F ILD +E E D + R G +EF+N+ F
Sbjct: 296 RPLKSL--TNVNAQFQRGMAACQTLFAILD--SEQEKDEGKRVID-RATGDLEFRNVTFT 350
Query: 895 YPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954
YP R EV L N +L+I G VALVG SG+GKS++ +L+ RFYD +EG IL+DG ++E
Sbjct: 351 YPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409
Query: 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXX-XXXXKKANIHDFISSLPDG 1013
Y L LR+Q+ LV Q LF+ ++ NNI Y + A DFI+ + +G
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 469
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
DT++GE G LSGGQ+QRIAIAR LL+ I++LDEATSALD ESER I +AL+
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD----- 524
Query: 1074 SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133
EL T + +AHRL+T+ +D IVV++ G +VE G+HS L+A+ GVY++L+++
Sbjct: 525 -----ELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKM 578
Query: 1134 Q 1134
Q
Sbjct: 579 Q 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 243 bits (619), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 152/476 (31%), Positives = 248/476 (52%), Gaps = 16/476 (3%)
Query: 25 VGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLI 84
VG FD G +I+ V + + I + +G + F S T V++ +SL+
Sbjct: 125 VGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVT 183
Query: 85 FLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFS 144
+VP+ ++I + + L + +IE+ IS + + F E E++ F
Sbjct: 184 LSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD 243
Query: 145 DCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSI 204
+ + + GV + V +ALI G + T G +
Sbjct: 244 RVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT----- 298
Query: 205 LFGAIALTYAAPDMQVFNQ------AKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNID 258
F + + P ++ NQ A A+ IF+++ + EL ++ G I+
Sbjct: 299 -FIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE-KDDPDAVELREVRGEIE 356
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
++V F+Y + + +LK + I G+ VALVG +G GK+T+++L+ RFYD G IL+
Sbjct: 357 FKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
D ++I+ + SLR +IG V Q+ LF+ ++ +N+K GN A DE+I A+ + ++ FI
Sbjct: 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFI 474
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
LP+ Y T L G LS GQ+Q +AI RA + NP IL+LDEATS +D+++EK +Q A+
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 439 ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ M+G+T I+IAHR++TI NAD+I V+ DG++ E G H L+Q FY LFT Q
Sbjct: 535 WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 156/518 (30%), Positives = 264/518 (50%), Gaps = 29/518 (5%)
Query: 623 LQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISD 682
LQ + + + LR+ L+ + R + +F++ + G + SR+++D + ++ +
Sbjct: 96 LQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH--GDIISRVINDVDNINNVLGN 153
Query: 683 RMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHT 742
+ I ++ A I+ V+ ++LV +++P + I + + + ++
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213
Query: 743 EFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNI 802
+ + E S + + F EE ++K E ++ K I GV+ + N+
Sbjct: 214 QLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNL 273
Query: 803 AHAVALWYTAVLIDKKQ------ATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVL 856
A+ + L K ATF R + T P + EL + A+
Sbjct: 274 GFALISGFGGWLALKDIITVGTIATFIGYSRQF-----TRP-LNELSNQFNMIQMALASA 327
Query: 857 APAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLK 916
FEILD E E D P++ E ++G IEF+N+ F+Y + VL + + I+PG K
Sbjct: 328 ERIFEILD--LEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQK 383
Query: 917 VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC 976
VALVGP+G+GK++++ LL+RFYD + G IL+DG I++ LRS IG+V Q+ +LFS
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 977 SIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036
+++ N+ YGN K + FI LP+GY+TV+ + G LS GQ+Q +AI
Sbjct: 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503
Query: 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096
R L P I++LDEATS +D ++E+ I +A+ +L T I +AHRL T+
Sbjct: 504 RAFLANPKILILDEATSNVDTKTEKSIQAAM----------WKLMEGKTSIIIAHRLNTI 553
Query: 1097 INSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
N+D+I+V+ GE+VEMG H L+ + +G Y L+ Q
Sbjct: 554 KNADLIIVLRDGEIVEMGKHDELI-QKRGFYYELFTSQ 590
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 237 bits (604), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/476 (32%), Positives = 254/476 (53%), Gaps = 21/476 (4%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FD + STG +++ ++ + A L + A+ + + W++SL++ +V
Sbjct: 116 FDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF---S 144
P++ + +KR +S + TS EQ + K V ++ G+ E K F S
Sbjct: 175 APVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVS 234
Query: 145 DCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSI 204
+ M +Q + I + M S+ +A++ + A+ + G V S
Sbjct: 235 NSMRQQTMKLVSAQSIADPVIQMIASL--ALFAVLFLASVDSIRAELTPG--TFTVVFSA 290
Query: 205 LFGAI----ALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGK-ELEKIDGNIDI 259
+FG + ALT + F + AA +F ++ + + GK E E+++G +D+
Sbjct: 291 MFGLMRPLKALTSVTSE---FQRGMAACQTLFGLMDLE---TERDNGKYEAERVNGEVDV 344
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319
+DV F Y + ++ L S SIP GK VALVG SG GKST+ +L RFYD +G I +D
Sbjct: 345 KDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Query: 320 SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-VGNMDADDEQIYNASMMANAHSFI 378
+++D L +LR++ VSQ LF ++ +NI + EQI A+ A+A FI
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+P T +G+ G LSGGQ+QR+AIARA++++ P+L+LDEATSALD+ESE+ +Q AL
Sbjct: 464 ENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 439 ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ + +TV++IAHR+STI AD I VV++G++ E G H LL Y +L +Q
Sbjct: 524 DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 162/537 (30%), Positives = 268/537 (49%), Gaps = 34/537 (6%)
Query: 608 LAFSLVGLFSLFTHTLQ----HYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAG 663
L F ++GL +F L Y V + +RR L+ + + +F+ Q G
Sbjct: 67 LPFMILGL--MFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTG 122
Query: 664 SLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGG 723
L SRI D+ V S + IV+ +SI+ + W+++LV V P
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 724 LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSR 783
+K + S + A S + + V S+ +E +++ + +K S R
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQE--VERKR--FDKVSNSMR 238
Query: 784 KESIKYGVIQGFSLCLWNIAHAVALWYTAVL--IDKKQATFRDG---IRAYQIFSLTVPS 838
++++K Q + + + ++AL+ L +D +A G + +F L P
Sbjct: 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP- 297
Query: 839 ITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSR 898
+ L ++ + F ++D +TE + E+ R+ G ++ +++ F Y +
Sbjct: 298 LKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTYQGK 354
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
E L++ S I G VALVG SG+GKS++ L RFYD + G I +DG +++Y L
Sbjct: 355 -EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
Query: 959 RLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKKANIHDFISSLPDGYDTV 1017
LR LV Q LF+ +I NNI Y ++A+ +FI ++P G DTV
Sbjct: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV 473
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSC 1077
+GE G LSGGQ+QR+AIAR LL+ +++LDEATSALD ESER I +AL+
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD--------- 524
Query: 1078 GELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
EL T + +AHRL+T+ +D I+V+D+GE++E G H+ L+A+ G Y++L+++Q
Sbjct: 525 -ELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD-GAYAQLHRIQ 579
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 182/290 (62%), Gaps = 14/290 (4%)
Query: 845 LIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVL 904
L+P + F++L +TE++ D P + KGRIEF+N+ F+Y E L
Sbjct: 14 LVPRGSHMFIDMENMFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSYADGRET--L 70
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964
+ S + PG +ALVGPSGAGKS++L LL RFYD + G I IDG+ I + LRS I
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 965 GLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQ 1024
G+V Q+ +LF+ +I +NI YG + A IHD I + P+GY T VGE+G +
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084
LSGG+KQR+AIART+LK P I+LLDEATSALD +ER I ++L + C A+RT
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL------AKVC---ANRT 241
Query: 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
T I VAHRL+TV+N+D I+V+ G +VE G H L++ GVY+ ++QLQ
Sbjct: 242 T-IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG-GVYADMWQLQ 289
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 163/256 (63%), Gaps = 2/256 (0%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G I+ +V F+Y + L+ S ++ G+ +ALVG SG GKST++ L+ RFYD S+G
Sbjct: 52 GRIEFENVHFSYADGRE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
I ID +I + SLR +IG V Q+ LF ++ DNI+ G + A ++++ A+ A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H I P+ Y T++G+RG++LSGG+KQR+AIAR I+K P I+LLDEATSALD+ +E+ +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
Q +L + RT I++AHR+ST+VNAD I V++DG + E G H +LL Y ++ +Q
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289
Query: 495 NLRPIDDSRTKASTVE 510
+ TK T+E
Sbjct: 290 QGQEETSEDTKPQTME 305
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 253/467 (54%), Gaps = 13/467 (2%)
Query: 34 TGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV-ICCWEVSLLIFLVVPMIL 92
T +IT +++ ++ +++ + L + + F G+++AV I S+LIFL+ P++L
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 93 VIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMD--KQ 150
+ TK+ N + E ++ + + ++ V AF E E ++F + ++
Sbjct: 179 LF-VWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRR 237
Query: 151 IIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAA---VMSILFG 207
IIS ++ L +F + ++W G V+V + G ++A +M I+F
Sbjct: 238 SIISAFSLIV--FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF- 294
Query: 208 AIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYP 267
+L + +A A+ + +V+ KP I + L ++G++ +V F Y
Sbjct: 295 --SLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYF 352
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
D +L G + S+ G +VA++G +G GKST+++L+ R DP G + +D L+++ +
Sbjct: 353 ENTDP-VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
LK LR +I AV QE LF+G++ +N+K G DA D++I A+ +A H FI LP+ Y +
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTV 447
+ + G SGGQKQR++IARA+VK P +L+LD+ TS++D +EK + + L+R +G T
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 448 ILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+I ++ T + AD I V+ +G+V GTH LL+ Y ++ Q
Sbjct: 532 FIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQ 578
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/578 (25%), Positives = 271/578 (46%), Gaps = 38/578 (6%)
Query: 571 VAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630
V +S+P I+ G+A D + G L +L+G T+ F
Sbjct: 33 VVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTV---FASY 89
Query: 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQC 690
+ +LRR L+ VL I+ + SL +R+ +D + ++ ++ + ++V+
Sbjct: 90 ASQNFGADLRRDLFRKVLSFSISNVNRFH--TSSLITRLTNDVTQLQNLVMMLLRIVVRA 147
Query: 691 ISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSE 750
+ ++++ ++ +++ V ++P + + K + E + E
Sbjct: 148 PLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRE 207
Query: 751 SASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLW---------N 801
+ +R V +F EE E ES++ +I FSL ++ N
Sbjct: 208 NLLGVRVVRAFRREE---------YENENFRKANESLRRSIISAFSLIVFALPLFIFIVN 258
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVP-SITELWTLIPTVISAITVLAPAF 860
+ LW+ VL+ Q I AY + + + S+ + ++ ++ A
Sbjct: 259 MGMIAVLWFGGVLVRNNQMEI-GSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVL 317
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
E+L+ K IE +A + ++G + F+N++F Y + VL+ + ++PG VA++
Sbjct: 318 EVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVL 375
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G+GKS+++ L+ R DP G + +D ++ L+ LR I V QE +LFS +I+
Sbjct: 376 GETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE 435
Query: 981 NICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
N+ +G K A IHDFI SLP+GYD+ V G SGGQKQR++IAR L+
Sbjct: 436 NLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
K+P +++LD+ TS++D +E+ I L+ L + C T + ++ T + +D
Sbjct: 496 KKPKVLILDDCTSSVDPITEKRI---LDGLKRYTKGC-------TTFIITQKIPTALLAD 545
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSG 1138
I+V+ +G+V G+H L+ + Y +Y+ Q +G
Sbjct: 546 KILVLHEGKVAGFGTHKELLEHCKP-YREIYESQFGNG 582
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 159/236 (67%), Gaps = 3/236 (1%)
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319
R V FAY + IL+ S ++A G SG GKST+ SL+ RFY P+ G+I ID
Sbjct: 5 RHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 320 SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAHSFI 378
I ++ L++ R IG VSQ+ ++ G++ +N+ G D DE ++ +A A SF+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+PDQ +TE+G+RGV++SGGQ+QR+AIARA ++NP IL+LDEAT++LDSESE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 439 ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ M+GRT ++IAHR+STIV+AD I +E GQ+T +G H+ L+ T Y + + Q
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 141/234 (60%), Gaps = 13/234 (5%)
Query: 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
+++ F Y ++ L + S + +P +A GPSG GKS++ +LL RFY P G I ID
Sbjct: 5 RHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 949 GKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKKANIHDFI 1007
G+ I +L RSQIG V Q+ + + +IR N+ YG A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
++PD +T VGE+G ++SGGQ+QR+AIAR L+ P I++LDEAT++LD+ESE ++ AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1068 EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
++L + RTT + +AHRL+T++++D I ++KG++ G H+ LVA
Sbjct: 183 DSL---------MKGRTT-LVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 494 Q 494
Q
Sbjct: 241 Q 241
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 158/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 182 RNMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 231
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 232 SLYSYLYQLQS 242
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 494 Q 494
Q
Sbjct: 239 Q 239
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 158/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 180 RNMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 229
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 230 SLYSYLYQLQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 494 Q 494
Q
Sbjct: 245 Q 245
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 158/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 186 RNMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 236 SLYSYLYQLQS 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG +G GKST+ L+ RFY P NG
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 494 Q 494
Q
Sbjct: 241 Q 241
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 158/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG +G+GKS++ L+ RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 182 RNMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 231
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 232 SLYSYLYQLQS 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ D+ATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 494 Q 494
Q
Sbjct: 245 Q 245
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 158/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ D+ATSALD ESE VI+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 186 RNMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 236 SLYSYLYQLQS 246
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
NI+ DV F+YP + + LK + IP+G ALVG +G GKST+ L+ RFYD + GD
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
I I N+ + S+R IG V Q+ LF ++ NI G +DA DE++ A+ A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
FI LP ++ T +G +G++LSGG++QRIAIAR ++K+P I++ DEATS+LDS++E L Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+A+E + RT+I+IAHR+STI +A+ I ++ G++ E GTH LL+ + Y ++ MQ
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 158/250 (63%), Gaps = 12/250 (4%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF ++ F+YP + L + + I G ALVG +G+GKS++ LL RFYD EG I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHD 1005
I GK + +YN +RS IG+V Q+ +LF+ +I+ NI YG K A ++D
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
FI +LP +DT+VG KG +LSGG++QRIAIAR LLK P I++ DEATS+LD+++E +
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
A+E +L T I +AHRL+T+ +++ I++++KG++VE G+H L+ + G
Sbjct: 197 AVE----------DLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNG 245
Query: 1126 VYSRLYQLQA 1135
Y+ ++ +Q+
Sbjct: 246 EYAEMWNMQS 255
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IA R+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 494 Q 494
Q
Sbjct: 239 Q 239
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 157/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +A RL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 180 RNMH----------KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 229
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 230 SLYSYLYQLQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 4/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I R++ F Y +PD +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
+ + +GRTVI+IA R+ST+ NAD I V+E G++ E G H LL + Y+ L+ +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 494 Q 494
Q
Sbjct: 245 Q 245
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 157/251 (62%), Gaps = 13/251 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F+NI+F Y P P +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
+LIDG + + LR Q+G+V Q+ +L + SI +NI N K A H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ ++ T I +A RL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 186 RNMH----------KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Query: 1125 GVYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 236 SLYSYLYQLQS 246
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 192 bits (489), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/240 (41%), Positives = 152/240 (63%), Gaps = 7/240 (2%)
Query: 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
++G + +DV FAYP+RPD L+L+G + ++ G++ ALVG +G GKSTV +L+ Y P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMM 371
G +L+D + + + L + + AV QEP +F SL +NI G E+I A++
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES- 430
+ AHSFIS LP Y TE+ + G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+ S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 431 ---EKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
E+L+ E+ ER R+V+LI +S + AD I +E G + E GTH L++ Y
Sbjct: 191 LQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Score = 186 bits (471), Expect = 8e-47, Method: Composition-based stats.
Identities = 104/255 (40%), Positives = 151/255 (59%), Gaps = 10/255 (3%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
++G ++FQ++ F YP+RP+V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKK 1000
G +L+DGK + +Y R L Q+ V QEP +F S++ NI YG K
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ H FIS LP GYDT V E G QLSGGQ+Q +A+AR L+++P +++LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
+ V L +P E SR+ + H L+ V +D I+ ++ G + E G+H L+
Sbjct: 191 -LQVEQLLYESP------ERYSRSVLLITQH-LSLVEQADHILFLEGGAIREGGTHQQLM 242
Query: 1121 AESQGVYSRLYQLQA 1135
E +G Y + Q A
Sbjct: 243 -EKKGCYWAMVQAPA 256
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 189 bits (479), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 147/247 (59%), Gaps = 10/247 (4%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
+KG ++FQ++ F YP+ P V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKK 1000
G +L+DG+ + +Y+ L +Q+ V QEPLLF S R NI YG +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ HDFIS P GYDT VGE G QLSGGQ+Q +A+AR L+++P +++LD+ATSALDA
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA-GN 191
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
++ V L +P E ASRT + + H+L+ + I+ + +G V E G+H L+
Sbjct: 192 QLRVQRLLYESP------EWASRTV-LLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 1121 AESQGVY 1127
E G Y
Sbjct: 245 -ERGGCY 250
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 144/242 (59%), Gaps = 3/242 (1%)
Query: 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP 311
+ G + +DV FAYP+ P+ +L+G + ++ GK+ ALVG +G GKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 312 SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASM 370
+ G +L+D + D L + AV QEP LF S +NI G E+I +M
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ AH FIS P Y TE+G+ G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 431 EKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYN 488
+ VQ L + + RTV+LI H++S A I +++G V E GTH L++ Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 489 RL 490
+
Sbjct: 252 SM 253
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 145/247 (58%), Gaps = 10/247 (4%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
+KG ++FQ++ F YP+ P V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKK 1000
G +L+DG+ + +Y+ L +Q+ V QEPLLF S R NI YG +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ HDFIS P GYDT VGE G QLSGGQ+Q +A+AR L+++P +++LD ATSALDA
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA-GN 191
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
++ V L +P E ASRT + + +L+ + I+ + +G V E G+H L+
Sbjct: 192 QLRVQRLLYESP------EWASRTV-LLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 1121 AESQGVY 1127
E G Y
Sbjct: 245 -ERGGCY 250
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 142/242 (58%), Gaps = 3/242 (1%)
Query: 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP 311
+ G + +DV FAYP+ P+ +L+G + ++ GK+ ALVG +G GKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 312 SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASM 370
+ G +L+D + D L + AV QEP LF S +NI G E+I +M
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ AH FIS P Y TE+G+ G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 431 EKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYN 488
+ VQ L + + RTV+LI ++S A I +++G V E GTH L++ Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 489 RL 490
+
Sbjct: 252 SM 253
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 179 bits (455), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 10/247 (4%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
+KG ++FQ++ F YP+ P V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NXXXXXXXXXXXXKK 1000
G +L+DG+ + +Y+ L +Q+ V QEPLLF S R NI YG +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ HDFIS P GYDT VGE G QL+ GQ+Q +A+AR L+++P +++LD ATSALDA
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA-GN 191
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
++ V L +P E ASRT + + +L+ + I+ + +G V E G+H L+
Sbjct: 192 QLRVQRLLYESP------EWASRTV-LLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 1121 AESQGVY 1127
E G Y
Sbjct: 245 -ERGGCY 250
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 141/242 (58%), Gaps = 3/242 (1%)
Query: 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP 311
+ G + +DV FAYP+ P+ +L+G + ++ GK+ ALVG +G GKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 312 SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASM 370
+ G +L+D + D L + AV QEP LF S +NI G E+I +M
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ AH FIS P Y TE+G+ G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 431 EKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYN 488
+ VQ L + + RTV+LI ++S A I +++G V E GTH L++ Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 489 RL 490
+
Sbjct: 252 SM 253
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 20/230 (8%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+I +R+ F + +R D L G + SIP G +VA+VG GCGKS+++S + D G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
+ I + ++ V Q+ + SL +NI G +E Y + + A A
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL--EEPYYRSVIQACAL 106
Query: 376 -SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ LP TE+G++GV LSGGQKQR+++ARA+ N I L D+ SA+D+ K +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 435 QEAL---ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481
E + + ++ +T IL+ H MS + D+I V+ G+++E G++ LL
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 22/236 (9%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N F + +R + LN + I G VA+VG G GKSS+L+ LL D EG +
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHD 1005
I G + V Q+ + + S+R NI +G A + D
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
+ LP G T +GEKG LSGGQKQR+++AR + I L D+ SA+DA + I
Sbjct: 110 -LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
+ PK G L ++ T+I V H ++ + DVI+VM G++ EMGS+ L+A
Sbjct: 169 --NVIGPK----GMLKNK-TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 16/284 (5%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G + ++D+ Y + IL+ S SI G+ V L+G +G GKST++S R + + G
Sbjct: 18 GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+I ID ++ + L+ RK G + Q+ +F+G+ N+ N D++I+ +
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGL 134
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
S I Q P + L G LS G KQ + +AR+++ ILLLDE ++ LD + +++
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTM- 493
+ L++A TVIL R+ ++ D V+E+ +V + + S+L+ + F
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ---YDSILELYHYPADRFVAG 251
Query: 494 ------QNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESK 531
N P+ + A+ ++ E + +Q+ P ES+
Sbjct: 252 FIGSPKMNFLPV---KVTATAIDQVQVELPMPNRQQVWLPVESR 292
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
+L N S I PG +V L+G +G+GKS++L+ LR + EG I IDG L + R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
G++ Q+ +FS + R N+ N + + I P D V+ + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNL-DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
C LS G KQ + +AR++L + I+LLDE ++ LD + ++I L+ + +
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK----------QAFA 203
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
T I R+ ++ D +V+++ +V + S
Sbjct: 204 DCTVILCEARIEAMLECDQFLVIEENKVRQYDS 236
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 30/218 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKSL 331
L SL +PAG++ ++G+SG GKST+I V P+ G +L+D + L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 332 RKNIGAVSQEPSLFT-----GSLMDNIKVGNMDADD-----EQIYNASMMANAHSFISQL 381
R+ IG + Q +L + G++ +++ N D+ ++ + + + H
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH------ 134
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D Y + LSGGQKQR+AIARA+ NP +LL DEATSALD + + + E L+
Sbjct: 135 -DSYPS-------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 442 MQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+ G T++LI H M + D +AV+ +G++ E T
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 27/237 (11%)
Query: 886 IEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I+ NI F+ +R + LNN SL + G ++G SGAGKS+++ + P EG
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 944 IILIDGK---GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXK- 999
+L+DG+ + E L + R QIG++ Q L S + +GN
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS----SRTVFGNVALPLELDNTPKDE 116
Query: 1000 -KANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
K + + +S L D +D+ LSGGQKQR+AIAR L P ++L DEATSALD
Sbjct: 117 VKRRVTELLSLVGLGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
+ R I+ L+ +N + T + + H + V D + V+ GE++E
Sbjct: 173 PATTRSILELLKDINRRLG--------LTILLITHEMDVVKRICDCVAVISNGELIE 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 64/211 (30%), Positives = 123/211 (58%), Gaps = 22/211 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL--- 331
LK +L+I G+ V+++G SG GKST+++++ P+ G++ ID++ DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 332 -RKNIGAVSQEPSLFTG-SLMDNIKV-------GNMDADDEQIYNASMMANAHSFISQLP 382
R IG V Q+ +L + ++N+++ G M ++ + + +++L
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK-----MAELE 135
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
++++ + QLSGGQ+QR+AIARA+ NPPI+L D+ T ALDS++ + + + L++
Sbjct: 136 ERFAN---HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 443 Q--GRTVILIAHRMSTIVNADMIAVVEDGQV 471
+ G+TV+++ H ++ + I ++DG+V
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 15/231 (6%)
Query: 886 IEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ +N+ Y E+ L N +L I+ G V+++GPSG+GKS++L ++ P EG
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 945 ILIDGKGIKEYNLRRL----RSQIGLV-QQEPLLFSCSIRNNICYGNXXXXXXXXXXXXK 999
+ ID + + L R +IG V QQ L+ + N+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ + + + + + K QLSGGQ+QR+AIAR L P I+L D+ T ALD+++
Sbjct: 122 RKRALECLK-MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
I+ L+ LN + T + V H + + I+ + GEV
Sbjct: 181 GEKIMQLLKKLNEEDGK--------TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 103 bits (258), Expect = 4e-22, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 18/231 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L+ SL I G+ + + G++G GKST++ +VA +P++GD+L D K + +R+N
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 335 IGAVSQEP--SLFTGSLMDNI--KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
IG Q P F + D + V N D + + ++ A F+ D + +
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSFKDRV- 137
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVIL 449
LSGG+K+R+AIA IV P IL+LDE LD E + + +E+ G+TVIL
Sbjct: 138 --PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 195
Query: 450 IAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD---FYNRLFTMQNL 496
I+H + T++N D + V+E G+ GT L+ D F +++ M+ L
Sbjct: 196 ISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 246
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 23/238 (9%)
Query: 884 GRIEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
GRIE N+ F+ + E L N SL I G + + G +G+GKS++L ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG-NXXXXXXXXXXXX 998
G +L DG+ K Y +RR IG+ Q P F+ + + + +
Sbjct: 63 SGDVLYDGERKKGYEIRR---NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
KKA +F+ +D+ LSGG+K+R+AIA ++ P I++LDE LD E
Sbjct: 120 KKA--MEFVGL---DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMGS 1115
+ ++ +E K + G+ T I ++H + TVIN D +VV++KG+ V G+
Sbjct: 175 GKTDLLRIVE----KWKTLGK-----TVILISHDIETVINHVDRVVVLEKGKKVFDGT 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 103 bits (258), Expect = 4e-22, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 18/231 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L+ SL I G+ + + G++G GKST++ +VA +P++GD+L D K + +R+N
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 335 IGAVSQEP--SLFTGSLMDNI--KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
IG Q P F + D + V N D + + ++ A F+ D + +
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSFKDRV- 135
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVIL 449
LSGG+K+R+AIA IV P IL+LDE LD E + + +E+ G+TVIL
Sbjct: 136 --PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193
Query: 450 IAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD---FYNRLFTMQNL 496
I+H + T++N D + V+E G+ GT L+ D F +++ M+ L
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 23/237 (9%)
Query: 885 RIEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
RIE N+ F+ + E L N SL I G + + G +G+GKS++L ++ +P
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG-NXXXXXXXXXXXXK 999
G +L DG+ K Y +RR IG+ Q P F+ + + + + K
Sbjct: 62 GDVLYDGERKKGYEIRR---NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
KA +F+ +D+ LSGG+K+R+AIA ++ P I++LDE LD E
Sbjct: 119 KA--MEFVGL---DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMGS 1115
+ ++ +E K + G+ T I ++H + TVIN D +VV++KG+ V G+
Sbjct: 174 KTDLLRIVE----KWKTLGK-----TVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 30/218 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKSL 331
L SL +PAG++ ++G+SG GKST+I V P+ G +L+D + L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 332 RKNIGAVSQEPSLFT-----GSLMDNIKVGNMDADD-----EQIYNASMMANAHSFISQL 381
R+ IG + Q +L + G++ +++ N D+ ++ + + + H
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH------ 157
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D Y + LSGGQKQR+AIARA+ NP +LL D+ATSALD + + + E L+
Sbjct: 158 -DSYPS-------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 442 MQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+ G T++LI H M + D +AV+ +G++ E T
Sbjct: 210 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 27/240 (11%)
Query: 883 KGRIEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
K I+ NI F+ +R + LNN SL + G ++G SGAGKS+++ + P
Sbjct: 22 KHMIKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 941 NEGIILIDGK---GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXX 997
EG +L+DG+ + E L + R QIG++ Q L S + +GN
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS----SRTVFGNVALPLELDNTP 136
Query: 998 XK--KANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
K + + +S L D +D+ LSGGQKQR+AIAR L P ++L D+ATS
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
ALD + R I+ L+ +N + T + + H + V D + V+ GE++E
Sbjct: 193 ALDPATTRSILELLKDINRRLG--------LTILLITHEMDVVKRICDCVAVISNGELIE 244
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 23/212 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L +L I G+ +AL+G SG GKST++ +A Y P++G I D ++ +L K +N
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 335 IGAVSQEPSLFTG-SLMDNI------KVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
+G V Q +L+ ++ NI + + D+++ + M + +++ P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP----- 131
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GR 445
QLSGGQ+QR+AIARA+VK P +LLLDE S LD+ V+ L+R + G
Sbjct: 132 ------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 446 TVILIAH-RMSTIVNADMIAVVEDGQVTETGT 476
T + + H + + AD IAV+ +G++ + GT
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T LNN +L+I+ G +AL+GPSG+GKS++L + Y P G I D K + E L
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKD 74
Query: 962 SQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGE 1020
+GLV Q L+ ++ NI + K + + D ++
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----IDKLLNR 129
Query: 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGEL 1080
QLSGGQ+QR+AIAR L+K P ++LLDE S LDA + + L+ L EL
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK------EL 183
Query: 1081 ASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
T + V H A + +D I V+ +GE++++G+
Sbjct: 184 G--ITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/211 (30%), Positives = 119/211 (56%), Gaps = 22/211 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL--- 331
LK +L+I G+ V++ G SG GKST ++++ P+ G++ ID++ DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 332 -RKNIGAVSQEPSLFTG-SLMDNIKV-------GNMDADDEQIYNASMMANAHSFISQLP 382
R IG V Q+ +L + ++N+++ G ++ + + A +L
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA-----ELE 135
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
++++ + QLSGGQ+QR+AIARA+ NPPI+L DE T ALDS++ + + + L++
Sbjct: 136 ERFAN---HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLN 192
Query: 443 Q--GRTVILIAHRMSTIVNADMIAVVEDGQV 471
+ G+TV+++ H ++ + I ++DG+V
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 15/231 (6%)
Query: 886 IEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ +N+ Y E+ L N +L I+ G V++ GPSG+GKS+ L ++ P EG
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 945 ILIDGKGIKEYNLRRL----RSQIGLV-QQEPLLFSCSIRNNICYGNXXXXXXXXXXXXK 999
+ ID + + L R +IG V QQ L+ + N+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ + + + + K QLSGGQ+QR+AIAR L P I+L DE T ALD+++
Sbjct: 122 RKRALECLKX-AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKT 180
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
I L+ LN + T + V H + + I+ + GEV
Sbjct: 181 GEKIXQLLKKLNEEDGK--------TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 123/211 (58%), Gaps = 22/211 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL--- 331
LK +L+I G+ V+++G SG GKST+++++ P+ G++ ID++ DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 332 -RKNIGAVSQEPSLFTG-SLMDNIKV-------GNMDADDEQIYNASMMANAHSFISQLP 382
R IG V Q+ +L + ++N+++ G M ++ + + +++L
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK-----MAELE 135
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
++++ + QLSGGQ+QR+AIARA+ NPPI+L D+ T ALDS++ + + + L++
Sbjct: 136 ERFAN---HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 443 Q--GRTVILIAHRMSTIVNADMIAVVEDGQV 471
+ G+TV+++ H ++ + I ++DG+V
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 886 IEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
++ +N+ Y E+ L N +L I+ G V+++GPSG+GKS++L ++ P EG
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 945 ILIDGKGIKEYNLRRL----RSQIGLVQQE----PLLFSCSIRNNICYGNXXXXXXXXXX 996
+ ID + + L R +IG V Q+ PLL + N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE---NVELPLIFKYRGAMSG 118
Query: 997 XXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
++ + + + + + K QLSGGQ+QR+AIAR L P I+L D+ T ALD
Sbjct: 119 EERRKRALECLK-MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
+++ I+ L+ LN + T + V H + + I+ + GEV
Sbjct: 178 SKTGEKIMQLLKKLNEEDGK--------TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 30/218 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKSL 331
L SL +PAG++ ++G+SG GKST+I V P+ G +L+D + L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 332 RKNIGAVSQEPSLFT-----GSLMDNIKVGNMDADD-----EQIYNASMMANAHSFISQL 381
R+ IG + Q +L + G++ +++ N D+ ++ + + + H
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH------ 157
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D Y + LSGGQKQR+AIARA+ NP +LL D+ATSALD + + + E L+
Sbjct: 158 -DSYPS-------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 442 MQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+ G T++LI H + D +AV+ +G++ E T
Sbjct: 210 NRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 883 KGRIEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
K I+ NI F+ +R + LNN SL + G ++G SGAGKS+++ + P
Sbjct: 22 KHXIKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 941 NEGIILIDGK---GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXX 997
EG +L+DG+ + E L + R QIG + Q L S + +GN
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS----SRTVFGNVALPLELDNTP 136
Query: 998 XK--KANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
K + + +S L D +D+ LSGGQKQR+AIAR L P ++L D+ATS
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
ALD + R I+ L+ +N + T + + H V D + V+ GE++E
Sbjct: 193 ALDPATTRSILELLKDINRRLG--------LTILLITHEXDVVKRICDCVAVISNGELIE 244
Query: 1113 MGS 1115
+
Sbjct: 245 QDT 247
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 43/243 (17%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSL 331
+LKG ++ I G++V ++G SG GKST + + D G+I+ID +N+K D +L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADD-----------EQIYNASMMANAHSFIS 379
R+ +G V Q +LF ++++NI + M E + + AH++
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL- 438
PD LSGGQ QR+AIARA+ P I+L DE TSALD E +V E L
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS 179
Query: 439 ---ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL------QTSDFYN 488
+ A +G T++++ H M D + ++ G + E G L +T F +
Sbjct: 180 VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 239
Query: 489 RLF 491
++F
Sbjct: 240 KVF 242
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 34/262 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ +K ++ S + VL ++ I G V ++GPSG+GKS+ L L D +EG I
Sbjct: 4 IDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 946 LIDGKGIK--EYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNXXXXXXXXXXXXKKA- 1001
+IDG +K + NL ++R ++G+V Q LF ++ NNI KA
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 120
Query: 1002 ------NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+ D + PD LSGGQ QR+AIAR L P IML DE TSAL
Sbjct: 121 ELLDKVGLKDKAHAYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D E ++S ++ L + T + V H + D ++ MD G ++E G
Sbjct: 170 DPEMVGEVLSVMKQLANEG---------MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 220
Query: 1115 SHSTLVAESQGVYSRLYQLQAF 1136
L Q ++ + + F
Sbjct: 221 KPEDLFDRPQHERTKAFLSKVF 242
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 43/243 (17%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSL 331
+LKG ++ I G++V ++G SG GKST + + D G+I+ID +N+K D +L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADD-----------EQIYNASMMANAHSFIS 379
R+ +G V Q +LF ++++NI + M E + + AH++
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL- 438
PD LSGGQ QR+AIARA+ P I+L DE TSALD E +V E L
Sbjct: 157 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS 200
Query: 439 ---ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL------QTSDFYN 488
+ A +G T++++ H M D + ++ G + E G L +T F +
Sbjct: 201 VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260
Query: 489 RLF 491
++F
Sbjct: 261 KVF 263
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 34/262 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ +K ++ S + VL ++ I G V ++GPSG+GKS+ L L D +EG I
Sbjct: 25 IDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 946 LIDGKGIK--EYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKA- 1001
+IDG +K + NL ++R ++G+V Q LF ++ NNI KA
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 1002 ------NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+ D + PD LSGGQ QR+AIAR L P IML DE TSAL
Sbjct: 142 ELLDKVGLKDKAHAYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D E ++S ++ L + T + V H + D ++ MD G ++E G
Sbjct: 191 DPEMVGEVLSVMKQLANEG---------MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241
Query: 1115 SHSTLVAESQGVYSRLYQLQAF 1136
L Q ++ + + F
Sbjct: 242 KPEDLFDRPQHERTKAFLSKVF 263
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 41/304 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
++G S I G+MV L+G SG GK+T++ L+A P+ GD+ I + DL + ++N
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG------NMDADDEQIYNASMMANAHSFISQLPDQYST 387
+G V Q +LF ++ DN+ G D D ++ S+ ++ P
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH---- 144
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GR 445
+LSGGQ+QR+A+ARA+ P +LL DE +A+D++ + ++ + + G
Sbjct: 145 -------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH------------SLLQTSDFYNRLFT 492
T + + H + AD + V+ +G V + GT S + S+ + R
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWTR--A 255
Query: 493 MQNLRPIDDSRTKASTVESTSTEQQISVV---EQLEEPEESKRELSASTGQEEVKGKRTT 549
+QN R I+ + + S +++VV + +E S+RE A + KG +
Sbjct: 256 VQNGR-IEVAGAALPVDPAVSEGSEVAVVVRPKDVELQPASEREAHAQVVRSAFKGSYSA 314
Query: 550 IFFR 553
+ R
Sbjct: 315 CWIR 318
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF ++ YP + S QI G V L+GPSG+GK+++L L+ P +G +
Sbjct: 15 IEFVGVEKIYPGGARS--VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIH 1004
I GK + + L + +GLV Q LF ++ +N+ +G + +
Sbjct: 73 WIGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
F+ ++ +LSGGQ+QR+A+AR L RP ++L DE +A+D + R +
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ + ++ + T + V H + +D ++V+ +G V + G+
Sbjct: 186 TFVRQVHDEMG--------VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L SL + +G+ ++G +G GK+ + L+A F+ P +G IL+D ++ DL + + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG---NMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
I V Q SLF ++ N++ G D +++ + + + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE--RAMQGRTVI 448
+ LSGG++QR+A+ARA+V NP ILLLDE SALD +++ +E L TV+
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 449 LIAHRMSTI-VNADMIAVVEDGQVTETGTHHSLLQ 482
I H + + AD IAVV DG++ + G + +
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L+N SL++E G ++GP+GAGK+ L L+ F+ P+ G IL+DGK + +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHD 73
Query: 964 IGLVQQEPLLF-SCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYD----TVV 1018
I V Q LF +++ N+ +G + I D L D ++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG------------MRMKKIKDPKRVLDTARDLKIEHLL 121
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA---ESERVIVSALEALNPKSS 1075
LSGG++QR+A+AR L+ P I+LLDE SALD E+ R ++S L N K +
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLT 180
Query: 1076 SCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112
+T +A R+A V++ +I V E+ E
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)
Query: 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336
G S + G+ VAL+G SGCGK+T + ++A Y P++G+I D + + D+ K + +G
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVG 78
Query: 337 AVSQEPSLFTG-SLMDNI--KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
V Q +L+ ++ +NI + +++ + I L D+ T
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------ 132
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIA 451
QLSGGQ+QR+A+ARA+VK P +LL DE S LD+ +++ ++ Q G T + +
Sbjct: 133 -QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 452 H-RMSTIVNADMIAVVEDGQVTETGT 476
H + + A IAV G++ + GT
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGT 217
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
+V ++ S +++ G VAL+GPSG GK++ L +L Y P G I D + + +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
++G+V Q L+ ++ NI + + I + D ++
Sbjct: 75 --REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL-----IDNLL 127
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCG 1078
K QLSGGQ+QR+A+AR L+K+P ++L DE S LDA ++ + ++ L
Sbjct: 128 DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ------Q 181
Query: 1079 ELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
EL T + V H A + + I V ++G++V+ G+ + + ++ + +F
Sbjct: 182 ELG--ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF-----VASFI 234
Query: 1138 GN 1139
GN
Sbjct: 235 GN 236
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
D +V F++ +LK +L+I G+M+A+ GS+G GK++++ L+ + S G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII- 95
Query: 318 IDSLNIKDLDLKSLRKNIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-N 373
K+ G VS Q + G++ +NI G + DE Y + + A
Sbjct: 96 ---------------KHSGRVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQ 138
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
I++ +Q +T LG+ GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+
Sbjct: 139 LQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 198
Query: 434 VQEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492
V E+ + + M +T IL+ +M + AD I ++ G +S FY
Sbjct: 199 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG-------------SSYFYGTFSE 245
Query: 493 MQNLRP 498
+Q+LRP
Sbjct: 246 LQSLRP 251
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 23/248 (9%)
Query: 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
N+ F++ VL N +L IE G +A+ G +G+GK+S+L L+L + +EGII
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 949 GKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFIS 1008
G+ + Q + +I+ NI +G K + I+
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
+ +TV+GE G LSGGQ+ RI++AR + K + LLD LD +E +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF---- 200
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYS 1128
+S C +A++ T+I V ++ + +D I+++ +G G+ S L + S
Sbjct: 201 ----ESCVCKLMANK-TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
Query: 1129 RLYQLQAF 1136
+L F
Sbjct: 256 KLMGYDTF 263
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
D +V F++ +LK +L+I G+M+A+ GS+G GK++++ L+ + S G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII- 95
Query: 318 IDSLNIKDLDLKSLRKNIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-N 373
K+ G VS Q + G++ +NI G + DE Y + + A
Sbjct: 96 ---------------KHSGRVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQ 138
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
I++ +Q +T LG+ GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+
Sbjct: 139 LQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 198
Query: 434 VQEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492
V E+ + + M +T IL+ +M + AD I ++ G +S FY
Sbjct: 199 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG-------------SSYFYGTFSE 245
Query: 493 MQNLRP 498
+Q+LRP
Sbjct: 246 LQSLRP 251
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 32/276 (11%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
E+L++ + D SS+ N+ F++ VL N +L IE G +A+
Sbjct: 20 ELLEKVQQSNGDRKHSSDE---------NNVSFSHLCLVGNPVLKNINLNIEKGEMLAIT 70
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G+GK+S+L L+L + +EGII G+ + Q + +I+
Sbjct: 71 GSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKE 117
Query: 981 NICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
NI +G K + I+ + +TV+GE G LSGGQ+ RI++AR +
Sbjct: 118 NIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 176
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
K + LLD LD +E + +S C +A++ T+I V ++ + +D
Sbjct: 177 KDADLYLLDSPFGYLDVFTEEQVF--------ESCVCKLMANK-TRILVTSKMEHLRKAD 227
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
I+++ +G G+ S L + S+L F
Sbjct: 228 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 34/245 (13%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
D +V F++ +LK +L+I G+M+A+ GS+G GK++++ L+ + S G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII- 95
Query: 318 IDSLNIKDLDLKSLRKNIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
K+ G VS Q + G++ +NI + + D+ + +
Sbjct: 96 ---------------KHSGRVSFCSQFSWIMPGTIKENI-ISGVSYDEYRYKSVVKACQL 139
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
I++ +Q +T LG+ GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 435 QEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTM 493
E+ + + M +T IL+ +M + AD I ++ G +S FY +
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQG-------------SSYFYGTFSEL 246
Query: 494 QNLRP 498
Q+LRP
Sbjct: 247 QSLRP 251
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 32/276 (11%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
E+L++ + D SS+ N+ F++ VL N +L IE G +A+
Sbjct: 20 ELLEKVQQSNGDRKHSSDE---------NNVSFSHLCLVGNPVLKNINLNIEKGEMLAIT 70
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G+GK+S+L L+L + +EGII G+ + Q + +I+
Sbjct: 71 GSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKE 117
Query: 981 NICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
NI G K + I+ + +TV+GE G LSGGQ+ RI++AR +
Sbjct: 118 NIISG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 176
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
K + LLD LD +E + +S C +A++ T+I V ++ + +D
Sbjct: 177 KDADLYLLDSPFGYLDVFTEEQVF--------ESCVCKLMANK-TRILVTSKMEHLRKAD 227
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
I+++ +G G+ S L + S+L F
Sbjct: 228 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
D +V F++ +LK +L+I G+M+A+ GS+G GK++++ L+ + S G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII- 95
Query: 318 IDSLNIKDLDLKSLRKNIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-N 373
K+ G VS Q + G++ +NI G + DE Y + + A
Sbjct: 96 ---------------KHSGRVSFCSQFSWIMPGTIKENIIRGV--SYDEYRYKSVVKACQ 138
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
I++ +Q +T LG+ GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+
Sbjct: 139 LQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 198
Query: 434 VQEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492
V E+ + + M +T IL+ +M + AD I ++ G +S FY
Sbjct: 199 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG-------------SSYFYGTFSE 245
Query: 493 MQNLRP 498
+Q+LRP
Sbjct: 246 LQSLRP 251
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 32/276 (11%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
E+L++ + D SS+ N+ F++ VL N +L IE G +A+
Sbjct: 20 ELLEKVQQSNGDRKHSSDE---------NNVSFSHLCLVGNPVLKNINLNIEKGEMLAIT 70
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G+GK+S+L L+L + +EGII G+ + Q + +I+
Sbjct: 71 GSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKE 117
Query: 981 NICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
NI G K + I+ + +TV+GE G LSGGQ+ RI++AR +
Sbjct: 118 NIIRG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 176
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
K + LLD LD +E + +S C +A++ T+I V ++ + +D
Sbjct: 177 KDADLYLLDSPFGYLDVFTEEQVF--------ESCVCKLMANK-TRILVTSKMEHLRKAD 227
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
I+++ +G G+ S L + S+L F
Sbjct: 228 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 37/246 (15%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
D +V F++ +LK +L+I G+M+A+ GS+G GK++++ L+ + S G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII- 95
Query: 318 IDSLNIKDLDLKSLRKNIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-N 373
K+ G VS Q + G++ +NI +G + DE Y + + A
Sbjct: 96 ---------------KHSGRVSFCSQFSWIMPGTIKENI-IGV--SYDEYRYKSVVKACQ 137
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
I++ +Q +T LG+ GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+
Sbjct: 138 LQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 197
Query: 434 VQEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492
V E+ + + M +T IL+ +M + AD I ++ G +S FY
Sbjct: 198 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG-------------SSYFYGTFSE 244
Query: 493 MQNLRP 498
+Q+LRP
Sbjct: 245 LQSLRP 250
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 33/276 (11%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
E+L++ + D SS+ N+ F++ VL N +L IE G +A+
Sbjct: 20 ELLEKVQQSNGDRKHSSDE---------NNVSFSHLCLVGNPVLKNINLNIEKGEMLAIT 70
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G+GK+S+L L+L + +EGII G+ + Q + +I+
Sbjct: 71 GSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKE 117
Query: 981 NICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
NI K + I+ + +TV+GE G LSGGQ+ RI++AR +
Sbjct: 118 NII--GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 175
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
K + LLD LD +E + +S C +A++ T+I V ++ + +D
Sbjct: 176 KDADLYLLDSPFGYLDVFTEEQVF--------ESCVCKLMANK-TRILVTSKMEHLRKAD 226
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
I+++ +G G+ S L + S+L F
Sbjct: 227 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 262
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 30/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 69
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI G + DE Y + + A IS+ ++ + LG+
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 188 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 221
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI +G K + + IS + + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 180
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ T+I V ++ + +D I+++ +G G+ S L
Sbjct: 181 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 30/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 81
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI G + DE Y + + A IS+ ++ + LG+
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 200 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 233
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI +G K + + IS + + V+GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 192
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ T+I V ++ + +D I+++ +G G+ S L
Sbjct: 193 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI +G + DE Y + + A IS+ ++ + LG+
Sbjct: 100 RISFCSQNSWIMPGTIKENI-IGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNLRP
Sbjct: 217 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLRP 250
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 24/234 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI K + + IS + + V+GE G
Sbjct: 101 -ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 209
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L S+L +F
Sbjct: 210 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSF 262
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI +G + DE Y + + A IS+ ++ + LG+
Sbjct: 100 RISFCSQNSWIMPGTIKENI-IGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNLRP
Sbjct: 217 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLRP 250
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 24/234 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI K + + IS + + V+GE G
Sbjct: 101 -ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 209
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L S+L +F
Sbjct: 210 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSF 262
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 30/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI G + DE Y + + A IS+ ++ + LG+
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 218 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 251
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 23/234 (9%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI G K + + IS + + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 210
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L S+L +F
Sbjct: 211 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSF 263
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 69
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI +G + DE Y + + A IS+ ++ + LG+
Sbjct: 70 RISFCSQFSWIMPGTIKENI-IGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 187 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 220
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI K + + IS + + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 179
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ T+I V ++ + +D I+++ +G G+ S L
Sbjct: 180 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
+L+I G+ + L+G SGCGK+T + ++A +P+ G I ++ L K +NI
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 338 VSQEPSLFTG-SLMDNI----KVGNMDAD--DEQIYNASMMANAHSFISQLPDQYSTELG 390
V Q +++ ++ +NI K+ D D+++ A+ + +++ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 139
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR--TVI 448
QLSGGQ+QR+A+ARAIV P +LL+DE S LD++ ++ +++ Q T I
Sbjct: 140 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTETGT 476
+ H ++ + D IAV+ GQ+ + G+
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T +N +L I+ G + L+GPSG GK++ L ++ +P EG I + + Y + R
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT-YLPPKDR 83
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKA------NIHDFISSLPDGYD 1015
+ + Q + ++ NI + + I + ++ P
Sbjct: 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---- 139
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
QLSGGQ+QR+A+AR ++ P ++L+DE S LDA+ + + ++ L K
Sbjct: 140 -------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK-- 190
Query: 1076 SCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127
+ T I V H ++ + D I VM++G+++++GS + + V+
Sbjct: 191 ------LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
+L+I G+ + L+G SGCGK+T + ++A +P+ G I ++ L K +NI
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 338 VSQEPSLFTG-SLMDNI----KVGNMDAD--DEQIYNASMMANAHSFISQLPDQYSTELG 390
V Q +++ ++ +NI K+ D D+++ A+ + +++ P
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 140
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR--TVI 448
QLSGGQ+QR+A+ARAIV P +LL+DE S LD++ ++ +++ Q T I
Sbjct: 141 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTETGT 476
+ H ++ + D IAV+ GQ+ + G+
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T +N +L I+ G + L+GPSG GK++ L ++ +P EG I + + Y + R
Sbjct: 26 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT-YLPPKDR 84
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKA------NIHDFISSLPDGYD 1015
+ + Q + ++ NI + + I + ++ P
Sbjct: 85 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---- 140
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
QLSGGQ+QR+A+AR ++ P ++L+DE S LDA+ + + ++ L K
Sbjct: 141 -------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK-- 191
Query: 1076 SCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127
+ T I V H ++ + D I VM++G+++++GS + + V+
Sbjct: 192 ------LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332
++ K +L I G+ V VG SGCGKST++ ++A ++GD+ I + D
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 333 KNIGAVSQEPSLFTG-SLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ +G V Q +L+ S+ +N+ G + +++ N + A Q + L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL------QLAHLLD 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVI 448
++ LSGGQ+QR+AI R +V P + LLDE S LD+ ++ + R + GRT+I
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTETG 475
+ H ++ + AD I V++ G+V + G
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
EV V + +L I G V VGPSG GKS++L ++ G + I K + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--P 72
Query: 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYD--T 1016
+G+V Q L+ S+ N+ +G KK I+ ++ + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE---SERVIVSALEALNPK 1073
++ K LSGGQ+QR+AI RTL+ P++ LLDE S LDA R+ +S L
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH----- 180
Query: 1074 SSSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMG 1114
G T I V H ++ + +D IVV+D G V ++G
Sbjct: 181 -KRLGR-----TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332
++ K +L I G+ V VG SGCGKST++ ++A ++GD+ I + D
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 333 KNIGAVSQEPSLFTG-SLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ +G V Q +L+ S+ +N+ G + +++ N + A Q + L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL------QLAHLLD 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVI 448
++ LSGGQ+QR+AI R +V P + LLDE S LD+ ++ + R + GRT+I
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTETG 475
+ H ++ + AD I V++ G+V + G
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
EV V + +L I G V VGPSG GKS++L ++ G + I K + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--P 72
Query: 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYD--T 1016
+G+V Q L+ S+ N+ +G KK I+ ++ + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE---SERVIVSALEALNPK 1073
++ K LSGGQ+QR+AI RTL+ P++ LLDE S LDA R+ +S L
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH----- 180
Query: 1074 SSSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMG 1114
G T I V H ++ + +D IVV+D G V ++G
Sbjct: 181 -KRLGR-----TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 22/230 (9%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI--KDLDLKSL 331
+L SLS+ G+++ ++G+SGCGK+T++ +A F P +G+I + I K+ +L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVG-----NMDADDEQIYNASMMANAHSFISQLPDQY 385
+ +G + QE LF ++ NI G A + Q A + IS+L +Y
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG---ISELAGRY 135
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-- 443
EL SGGQ+QR A+ARA+ +P ++LLDE SALD + + ++E + A++
Sbjct: 136 PHEL-------SGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 444 GRTVILIAH-RMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLF 491
G++ + ++H R + AD IAV++ G++ +T + H L Q +D LF
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALF 238
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 119/239 (49%), Gaps = 29/239 (12%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI--KEYNLRRL 960
VLN+ SL ++PG + ++G SG GK+++L L F P+ G I + GK I K NL
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 961 RSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPD--GYDTV 1017
++G + QE +LF ++ NI YG + A I ++ + G +
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYG-------LGNGKGRTAQERQRIEAMLELTGISEL 131
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI----VSALEALNPK 1073
G +LSGGQ+QR A+AR L P ++LLDE SALD + R I ++AL A N K
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGK 190
Query: 1074 SSSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
S+ + V+H R + +D I VM +G +++ S L + + + L+
Sbjct: 191 SA-----------VFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALF 238
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 117/216 (54%), Gaps = 26/216 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-----LK 329
LKG +++I G++ A++G +G GKST+ PS+G IL D+ K +D +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN---KPIDYSRKGIM 80
Query: 330 SLRKNIGAVSQEPS--LFTGSLMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQY 385
LR++IG V Q+P LF+ S+ ++ G NM +++I A + I L D+
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP 140
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQEALERA 441
+ LS GQK+R+AIA +V P +L+LDE T+ LD SE KL+ E +++
Sbjct: 141 TH-------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKE 192
Query: 442 MQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETGT 476
+ G T+I+ H + + + D + V+++G+V G
Sbjct: 193 L-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 24/241 (9%)
Query: 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951
+ NY L ++ I+ G A++G +G GKS++ P+ G IL D K
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71
Query: 952 IKEYNLR---RLRSQIGLVQQEP--LLFSCSIRNNICYG--NXXXXXXXXXXXXKKANIH 1004
I +Y+ + +LR IG+V Q+P LFS S+ ++ +G N A
Sbjct: 72 I-DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR 130
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
I L D C LS GQK+R+AIA L+ P +++LDE T+ LD I+
Sbjct: 131 TGIEHLKDK------PTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMGSHSTLVAES 1123
L + EL T I H + V + D + VM +G V+ G+ + AE
Sbjct: 184 KLLVEMQK------ELG--ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
Query: 1124 Q 1124
+
Sbjct: 236 E 236
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332
++ K +L I G+ V VG SGCGKST++ ++A ++GD+ I + D
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 333 KNIGAVSQEPSLFTG-SLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ +G V Q +L+ S+ +N+ G + +++ N + A Q + L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL------QLAHLLD 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVI 448
++ LSGGQ+QR+AI R +V P + LLD+ S LD+ ++ + R + GRT+I
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTETG 475
+ H ++ + AD I V++ G+V + G
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
EV V + +L I G V VGPSG GKS++L ++ G + I K + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--P 72
Query: 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYD--T 1016
+G+V Q L+ S+ N+ +G KK I+ ++ + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE---SERVIVSALEALNPK 1073
++ K LSGGQ+QR+AI RTL+ P++ LLD+ S LDA R+ +S L
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH----- 180
Query: 1074 SSSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMG 1114
G T I V H ++ + +D IVV+D G V ++G
Sbjct: 181 -KRLGR-----TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 28/243 (11%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
ILKG S I G++ L+G +G GK+T + +++ PS+G + + N+ + + +RK
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
I + +E + NM + + A A++ S I ++ ++ +TE+ G
Sbjct: 89 LISYLPEEAGAYR----------NMQGIEYLRFVAGFYASSSSEIEEMVER-ATEIAGLG 137
Query: 394 VQL-------SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GR 445
++ S G +++ IARA++ NP + +LDE TS LD + + V++ L++A Q G
Sbjct: 138 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 446 TVILIAHRMSTI-VNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRT 504
T+++ +H M + D IA++ +G + ETGT L + + QN+ + +
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER-------YKAQNIEEVFEEVV 250
Query: 505 KAS 507
K S
Sbjct: 251 KCS 253
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--YNLRRL 960
+L S +IE G L+GP+GAGK++ L ++ P+ GI+ + GK + E + +R+L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPD--GYDTVV 1018
I + +E + + RN G + I + + + G +
Sbjct: 90 ---ISYLPEE----AGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 140
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCG 1078
++ S G +++ IAR L+ P + +LDE TS LD + R + L+ ++S G
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEG 196
Query: 1079 ELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMGSHSTL 1119
T + +H + V D I ++ G +VE G+ L
Sbjct: 197 -----LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD--- 327
D +K SL I G+ + L+G SGCGK+T + +A +P+ G I I+ + D +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 328 -LKSLRKNIGAVSQEPSLFT-GSLMDNI-------KVGNMDADDEQIYNASMMANAHSFI 378
+ +++ V Q +L+ ++ DNI KV + D A + +
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLG-----L 132
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
++L L ++ +LSGGQ+QR+A+ RAI++ P + L DE S LD++ + L
Sbjct: 133 TEL-------LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAEL 185
Query: 439 ERAMQ--GRTVILIAH-RMSTIVNADMIAVVEDGQVTETGT 476
++ + G T I + H ++ D IAV G++ + GT
Sbjct: 186 KKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 23/224 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE----- 954
+VT + + SL+I+ G + L+GPSG GK++ L + +P G I I+ + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPD-- 1012
+ + R + Q L ++ +NI + K I + + +
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF-------PLKLRKVPKQEIDKRVREVAEXL 130
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
G ++ K +LSGGQ+QR+A+ R +++RP + L DE S LDA+ + L+ L
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 1073 KSSSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMGS 1115
+ T I V H ++ D I V +KGE+ ++G+
Sbjct: 191 QLG--------VTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 30/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI G + DE Y + + A IS+ ++ + LG+
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 218 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 251
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 23/234 (9%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI +G K + + IS + + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LS GQ+ +I++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 210
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L S+L +F
Sbjct: 211 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSF 263
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 27/217 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKS 330
++ SL + G+ + L+G SGCGK+T + ++A +PS G I I + D + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 331 LRKNIGAVSQEPSLFTG-SLMDNI-------KVGNMDADDEQIYNASMMANAHSFISQLP 382
++I V Q +L+ ++ DNI KV + D A ++ +++L
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG-----LTEL- 132
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
L ++ +LSGGQ+QR+A+ RAIV+ P + L+DE S LD++ ++ L++
Sbjct: 133 ------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 443 Q--GRTVILIAH-RMSTIVNADMIAVVEDGQVTETGT 476
+ G T I + H ++ + D IAV+ G + + G+
Sbjct: 187 RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE----- 954
EVT + SL+++ G + L+GPSG GK++ L ++ +P+ G I I K + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGY 1014
+ + R + Q L ++ +NI + + + + + G
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GL 129
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
++ K +LSGGQ+QR+A+ R ++++P + L+DE S LDA+ + + L+ L +
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 1075 SSCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMGS 1115
T I V H ++ + D I VM++G + ++GS
Sbjct: 190 G--------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 34/235 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK---DLDLKSL 331
L +++I G+ ++G SG GK+T + ++A PS G++ D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 332 RKNIGAVSQEPSLFTG-SLMDNI--KVGNMDADDEQIYN----ASMMANAHSFISQLPDQ 384
+ IG V Q +L+ + +NI + NM E+I + + + H ++ P +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE----SEKLVQEALER 440
LSGGQ+QR+A+ARA+VK+P +LLLDE S LD+ + LV+E R
Sbjct: 141 -----------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
G T+++++H + I AD + V+ G++ + G + D Y+ ++Q
Sbjct: 190 L--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG------KPEDLYDNPVSIQ 236
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 44/238 (18%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID-------GKGI 952
+V L+N ++ IE G + ++GPSGAGK++ + ++ P+ G + D GK I
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 953 KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG------NXXXXXXXXXXXXKKANIHD 1005
R+ IG+V Q L+ + + NI + + K +IH
Sbjct: 77 VPPEDRK----IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA---ESERV 1062
++ P +LSGGQ+QR+A+AR L+K P+++LLDE S LDA +S R
Sbjct: 133 VLNHFP-----------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119
+V ++ S G T + V+H A + +D + V+ KG++V++G L
Sbjct: 182 LVKEVQ------SRLG-----VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 23/210 (10%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL-----IDSLNIKDLDL 328
ILKG SLS+ G+ V+++G+SG GKST++ ++ P+ G + +D N K+L L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 329 KSLRKNIGAVSQ------EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
RK +G V Q E + ++ +K+G + ++ +S+L
Sbjct: 79 LRNRK-LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE--------RGEYLLSEL- 128
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
+L ++ +LSGG++QR+AIARA+ P +L DE T LDS + K V + +
Sbjct: 129 -GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 443 QGRT-VILIAHRMSTIVNADMIAVVEDGQV 471
+G T ++++ H ++DG+V
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKV 217
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI-----KEYNL 957
+L SL ++ G V+++G SG+GKS++L +L P EG + ++GK + KE +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHD--FISSLPDGYD 1015
R R ++G V Q F I N K+A +S L G
Sbjct: 79 LRNR-KLGFVFQ----FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL--GLG 131
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
+ K +LSGG++QR+AIAR L P ++ DE T LD+ + + ++ +N +
Sbjct: 132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191
Query: 1076 SCGELASRTTQITVAHRLATVINSDVI 1102
S + + HR + + V+
Sbjct: 192 SIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK + I G+++A+ GS+G GK++++ ++ +PS G I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTELGQR 392
I SQ + G++ +NI +G + DE Y + + A IS+ ++ + LG+
Sbjct: 100 RISFCSQFSWIMPGTIKENI-IGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIA 451
G+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + E+ + + M +T IL+
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
+M + AD I ++ +G +S FY +QNL+P
Sbjct: 217 SKMEHLKKADKILILHEG-------------SSYFYGTFSELQNLQP 250
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL + + +IE G +A+ G +GAGK+S+L +++ +P+EG I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI K + + IS + + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LS GQ+ +I++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMAN 209
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L S+L +F
Sbjct: 210 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSF 262
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 290 LVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-S 348
L+G +G GKS + L+A P G++ ++ +I L + R+ IG V Q+ +LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 349 LMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408
+ NI G + + + I+ L D+ + +LSGG++QR+A+AR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-------KPARLSGGERQRVALAR 139
Query: 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN----ADMIA 464
A+V P +LLLDE SA+D +++ ++ E L R +Q + I H ++ AD +A
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVA 198
Query: 465 VVEDGQVTETGTHHSLLQTSD 485
V+ +G++ E G L +
Sbjct: 199 VMLNGRIVEKGKLKELFSAKN 219
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 28/230 (12%)
Query: 904 LNNFSLQIEPGLK---VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
L NF L ++ + L+GP+GAGKS L L+ P+ G + ++G I L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPE 68
Query: 961 RSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVG 1019
R IG V Q+ LF S+ NI YG ++ I+ L D
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD------- 121
Query: 1020 EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE 1079
K +LSGG++QR+A+AR L+ +P ++LLDE SA+D +++ V++ L
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-----------R 170
Query: 1080 LASRTTQITVAHRLATVIN----SDVIVVMDKGEVVEMGSHSTLVAESQG 1125
R + + H +I +D + VM G +VE G L + G
Sbjct: 171 FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK---DLDLKSL 331
L +++I G+ ++G SG GK+T + ++A PS G++ D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 332 RKNIGAVSQEPSLFTG-SLMDNI--KVGNMDADDEQIYN----ASMMANAHSFISQLPDQ 384
+ IG V Q +L+ + +NI + NM E+I + + + H ++ P +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE----SEKLVQEALER 440
LSG Q+QR+A+ARA+VK+P +LLLDE S LD+ + LV+E R
Sbjct: 141 -----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
G T+++++H + I AD + V+ G++ + G + D Y+ ++Q
Sbjct: 190 L--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG------KPEDLYDNPVSIQ 236
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 44/238 (18%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID-------GKGI 952
+V L+N ++ IE G + ++GPSGAGK++ + ++ P+ G + D GK I
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 953 KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG------NXXXXXXXXXXXXKKANIHD 1005
R+ IG+V Q L+ + + NI + + K +IH
Sbjct: 77 VPPEDRK----IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA---ESERV 1062
++ P +LSG Q+QR+A+AR L+K P+++LLDE S LDA +S R
Sbjct: 133 VLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119
+V ++ S G T + V+H A + +D + V+ KG++V++G L
Sbjct: 182 LVKEVQ------SRLG-----VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++ V F Y +LK + GK+ +VG +G GK+T++ ++A + G+I
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+D D LRKN+G V Q PS ++ +++ ++ +M S
Sbjct: 68 FLDG---SPADPFLLRKNVGYVFQNPS---------SQIIGATVEEDVAFSLEIMGLDES 115
Query: 377 FISQLPDQYSTELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ + + +G G+ LSGGQKQR+AIA + ++ L LDE S LD S
Sbjct: 116 EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 431 EKLVQEALER-AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
++ + + LE +G+ +IL+ H + + + D I + +G + G+ ++
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 23/238 (9%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
RIE ++ F Y VL + + + E G +VG +G+GK+++L +L G
Sbjct: 11 RIELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNXXXXXXXXXXXXKKAN 1002
I +DG + LR+ +G V Q P + ++ ++ + +
Sbjct: 67 IFLDGSPADPFLLRK---NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
+ + + G + LSGGQKQR+AIA L + + LDE S LD S+R
Sbjct: 124 VLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
I LE+L + I V H L + + D I+ + G + GS V
Sbjct: 179 IFQVLESLKNEGKGI---------ILVTHELEYLDDMDFILHISNGTIDFCGSWEEFV 227
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RK 333
+KG L +P G++V L+G++G GK+T +S +A G I+ + +I + + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
I V + +F ++ +N+ G + D++ + +I L + L Q
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL-----EWIFSLFPRLKERLKQL 136
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAH 452
G LSGG++Q +AI RA+ P +L DE + L V E +++ Q T IL+
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 453 R--MSTIVNADMIAVVEDGQVTETGTHHSLL 481
+ + + A V+E GQ+ G LL
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELL 227
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E Q++ Y + + + L++ G V L+G +GAGK++ L+ + +G I
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 946 LIDGKGIKEYNLRRL-RSQIGLVQQEPLLF-SCSIRNNICYGNXXXXXXXXXXXXKKANI 1003
+ +G+ I + R I LV + +F ++ N+ G K I
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXG--------AYNRKDKEGI 115
Query: 1004 H---DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
++I SL + + G LSGG++Q +AI R L RP ++ DE + L
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 29/223 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI---KDLD--- 327
+LKG SL AG +++++GSSG GKST + + PS G I+++ NI +D D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 328 -------LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFIS 379
L+ LR + V Q +L++ ++++N+ + ++A A +++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR--ERALKYLA 138
Query: 380 QLP-DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
++ D+ + G+ V LSGGQ+QR++IARA+ P +LL DE TSALD E LV E L
Sbjct: 139 KVGIDERAQ--GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVL 193
Query: 439 ERAMQ-----GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
R MQ G+T++++ H M + + + + G++ E G
Sbjct: 194 -RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 33/248 (13%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--------- 953
VL SLQ G ++++G SG+GKS+ L + P+EG I+++G+ I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 954 ----EYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNXXXXXXXXXXXXKKANIHDFIS 1008
+ LR LR+++ +V Q L+S ++ N+ ++A +++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL--KYLA 138
Query: 1009 SLPDGYDT-VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
+ G D G+ LSGGQ+QR++IAR L P ++L DE TSALD E ++ +
Sbjct: 139 KV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 196
Query: 1068 EALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
+ L + T + V H + A ++S VI + +G++ E G + Q
Sbjct: 197 QQLAEEGK---------TMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGDPEQVFGNPQS 246
Query: 1126 VYSRLYQL 1133
RL Q
Sbjct: 247 --PRLQQF 252
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 19/221 (8%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331
Q ++ SL I +G+MVA++G +G GKST++ L+ + PS+G+ + N+ K+L
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 332 RKNIGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ + Q L F S+ + I++G Q A A + L
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT--------DCLALA 135
Query: 391 QRGVQ-LSGGQKQRIAIARAIVK------NPPILLLDEATSALDSESEKLVQEALERAMQ 443
QR + LSGG++QR+ +AR + + P L LDE TSALD ++ L + +
Sbjct: 136 QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195
Query: 444 GR--TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLL 481
V + H ++ + AD I ++ G++ GT +L
Sbjct: 196 QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-R 961
++N+ SL I G VA++GP+GAGKS++L LL + P+ G + G+ + + + L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIH-DFISSLPDGYDTVVGE 1020
++ + Q L F S+ I G ++ D ++ Y
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1021 KGCQLSGGQKQRIAIARTLLK------RPAIMLLDEATSALDAESERVIVSALEALN--- 1071
LSGG++QR+ +AR L + P + LDE TSALD ++ + L L
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 1072 PKSSSCGELASRTTQITVAHRL-ATVINSDVIVVMDKGEVVEMGS 1115
P + C V H L + +D I+++ +G++V G+
Sbjct: 198 PLAVCC-----------VLHDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 70.5 bits (171), Expect = 5e-12, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 16/229 (6%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNG 314
++IRD+ + S + ILKG +L +P G++ AL+G +G GKST+ ++A Y G
Sbjct: 4 LEIRDL---WASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 315 DILIDSLNIKDLDL-KSLRKNIGAVSQEPSLFTGSLMDN-IKVGNMDADDEQIYNASMMA 372
+IL+D NI +L + RK + Q P G + N +++ ++ A
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 373 NAHSFISQL--PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ L + Y + G SGG+K+R I + +V P +LDE S LD ++
Sbjct: 121 KVKKALELLDWDESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA 178
Query: 431 EKLVQEALERAMQGRT--VILIAH--RMSTIVNADMIAVVEDGQVTETG 475
K+V + AM+G ++I H R+ + D + V+ DG+V TG
Sbjct: 179 LKVVARGVN-AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNL-R 958
T+L +L + G AL+GP+GAGKS++ +L Y G IL+DG+ I E +
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 959 RLRSQIGLVQQEPL-LFSCSIRN------NICYGNXXXXXXXXXXXXKKANIHDFISSLP 1011
R R + L Q P+ + +I N G K + D+ S
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
Y + E SGG+K+R I + L+ P +LDE S LD ++ +V+ + A+
Sbjct: 137 SRY---LNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM- 189
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
+ + G L IT R+ I D + VM G VV G
Sbjct: 190 -RGPNFGALV-----ITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 21/214 (9%)
Query: 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL--------IDSLNIKDLDL 328
G SL I + A+VG S GKST+I + + P NG IL D L +++ +L
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTL-PPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 329 KSLR-KNIGAVSQEPSLFTGSLMDNIKV-----GNMDADDEQIYNASMMANAHSFISQLP 382
+ +R K I V P SL +KV ++A + ++ ++ A + +
Sbjct: 85 RKIRWKEIALV---PQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVR 141
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD--SESEKLVQEALER 440
L +QLSGG KQR+ IA A++ +P +L+LDE TSALD +++ + +
Sbjct: 142 LNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELK 201
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473
M T+I + H ++ AD +AV+ G + E
Sbjct: 202 KMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 37/245 (15%)
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN----EGIILIDGKGI---KEYNL 957
+ SL I A+VG S +GKS+++ + + PN G +L GK + +E L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 958 RRLR-SQIGLVQQ------EPLL-----FSCSIRNNICYGNXXXXXXXXXXXXKKANIHD 1005
R++R +I LV Q P + F ++ + + + ++
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
+ V+ QLSGG KQR+ IA LL P +++LDE TSALD ++ I+
Sbjct: 145 ---------EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII- 194
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ + + T I V H +A +D + V+ G +VE S +
Sbjct: 195 -------QLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPL 247
Query: 1125 GVYSR 1129
Y+R
Sbjct: 248 HPYTR 252
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/215 (23%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RK 333
L G S+S+ G + ++G +G GKST+I+++ F G + ++ +I + + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 334 NIGAVSQEPS-LFTGSLMDNIKVGNMDADDEQIYN----------ASMMANAHSFISQLP 382
I Q P L ++++N+ +G ++ + + + M+ A + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERA 441
+ S ++ +LSGGQ + + I RA++ NP ++++DE + + + + LE
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 442 MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+G T ++I HR+ ++N D + V+ +GQ+ G
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E L+ S+ + G ++GP+G+GKS+++ ++ F +EG + + K I
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 960 LRSQIGLVQ--QEPL-LFSCSIRNNICYGNXXXXXX-------------XXXXXXKKANI 1003
L G+V+ Q P L ++ N+ G K I
Sbjct: 79 LY-HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F+ L YD GE LSGGQ + + I R L+ P ++++DE + + I
Sbjct: 138 LEFLK-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMG 1114
+ + L K T + + HRL V+N D + VM G+++ G
Sbjct: 193 FNHVLELKAKG---------ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RK 333
L G S+S+ G + ++G +G GKST+I+++ F G + ++ +I + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 334 NIGAVSQEPS-LFTGSLMDNIKVGNMDADDEQIYN----------ASMMANAHSFISQLP 382
I Q P L ++++N+ +G ++ + + + M+ A + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERA 441
+ S ++ +LSGGQ + + I RA++ NP ++++D+ + + + + LE
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 442 MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+G T ++I HR+ ++N D + V+ +GQ+ G
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E L+ S+ + G ++GP+G+GKS+++ ++ F +EG + + K I
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 960 LRSQIGLVQ--QEPL-LFSCSIRNNICYGNXXXXXX-------------XXXXXXKKANI 1003
L G+V+ Q P L ++ N+ G K I
Sbjct: 79 L-YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F+ L YD GE LSGGQ + + I R L+ P ++++D+ + + I
Sbjct: 138 LEFL-KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDI 192
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMG 1114
+ + L K T + + HRL V+N D + VM G+++ G
Sbjct: 193 FNHVLELKAKG---------ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 32/246 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ F Y + + + + + + G ++A++G +GCGKST++ L+ + P G I
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQE-PSLFTGSLMDNIKVG------NMDADDEQIYNAS 369
+ ++IG V Q S F S++D + +G Y +
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
M A + ++ L + T LSGGQ+Q I IARAI ++LLDE TSALD
Sbjct: 110 MQALDYLNLTHLAKREFT-------SLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 430 SEKLVQEALERAMQGR--TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
++ +V L Q + TV+ H+ + +V ++ + Q + G ++L TS+
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNIL-TSENL 221
Query: 488 NRLFTM 493
LF +
Sbjct: 222 TALFHL 227
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +N+ F Y + E + + + G +A++G +G GKS++L LLL + P +G I
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ---EPLLFSCSIRNNICYGNXXXXXXXXXXXXKKAN 1002
+ IG V Q P F+ S+ + + G K
Sbjct: 63 -------------EVYQSIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFA-----KPK 102
Query: 1003 IHDFISSLPD----GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
HD+ ++ + + LSGGQ+Q I IAR + ++LLDE TSALD
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 1059 SERVIVSAL 1067
++ +++S L
Sbjct: 163 NQDIVLSLL 171
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/215 (23%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RK 333
L G S+S+ G + ++G +G GKST+I+++ F G + ++ +I + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 334 NIGAVSQEPS-LFTGSLMDNIKVGNMDADDEQIYN----------ASMMANAHSFISQLP 382
I Q P L ++++N+ +G + + + + M+ A + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERA 441
+ S ++ +LSGGQ + + I RA++ NP ++++DE + + + + LE
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 442 MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+G T ++I HR+ ++N D + V+ +GQ+ G
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E L+ S+ + G ++GP+G+GKS+++ ++ F +EG + + K I
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 960 LRSQIGLVQQ----EPLLFSCSIRN----NICYGNXXXXX--------XXXXXXXKKANI 1003
L G+V+ +PL + N IC G K I
Sbjct: 79 LY-HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F+ L YD GE LSGGQ + + I R L+ P ++++DE + + I
Sbjct: 138 LEFLK-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMG 1114
+ + L K T + + HRL V+N D + VM G+++ G
Sbjct: 193 FNHVLELKAKG---------ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 139/337 (41%), Gaps = 46/337 (13%)
Query: 200 AVMSILFGAIALTYAAPDMQ-VFNQAKAAGFEIFQVIQ---RKPRISYSSKGKELEKIDG 255
AV+ L I + Y P + +F++ K I + +Q + + + K+
Sbjct: 289 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE 348
Query: 256 NIDI-RDVCFAYPSRPDQLI--LKGFSLSIPAGKM-----VALVGSSGCGKSTVISLVAR 307
+D+ R+ YP +L+ F L + G++ + +VG +G GK+T + ++A
Sbjct: 349 RVDVERETLVEYP----RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Query: 308 FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYN 367
+P+ G + + DL V+ +P + D ++
Sbjct: 405 VEEPTEGKV--------EWDL--------TVAYKPQYIKAEYEGTVYELLSKIDSSKL-- 446
Query: 368 ASMMANAHSFISQLPDQYST-ELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSA 425
N++ + ++L +L R V+ LSGG+ QR+AIA ++++ I LLDE ++
Sbjct: 447 -----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 426 LDSESEKLVQEALERAMQG--RTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483
LD E V A+ M+ +T +++ H + I +V +G+ G +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM 561
Query: 484 SDFYNRLFTMQNL---RPIDDSRTKASTVESTSTEQQ 517
+ NR + R D R +A+ S +Q
Sbjct: 562 REGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQ 598
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 906 NFSLQIEPGL-----KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
+F L++EPG + +VGP+G GK++ + +L +P EG + E++L
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDL--- 417
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSL--PDGYDTVV 1018
V +P + K N + + + L P G +
Sbjct: 418 -----TVAYKPQYIKAEYEGTV-------YELLSKIDSSKLNSNFYKTELLKPLGIIDLY 465
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
LSGG+ QR+AIA TLL+ I LLDE ++ LD E + A+ L K+
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILIAHR 453
QLSGG+ QR+AIA A+++ DE +S LD V + R A +G+ V+++ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 454 MSTI-VNADMIAVV 466
++ + +D+I VV
Sbjct: 288 LAVLDYLSDVIHVV 301
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
QLSGG+ QR+AIA LL++ DE +S LD
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 140/339 (41%), Gaps = 50/339 (14%)
Query: 200 AVMSILFGAIALTYAAPDMQ-VFNQAKAAGFEIFQVIQ---RKPRISYSSKGKELEKIDG 255
AV+ L I + Y P + +F++ K I + +Q + + + K+
Sbjct: 275 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE 334
Query: 256 NIDI-RDVCFAYPSRPDQLI--LKGFSLSIPAGKM-----VALVGSSGCGKSTVISLVAR 307
+D+ R+ YP +L+ F L + G++ + +VG +G GK+T + ++A
Sbjct: 335 RVDVERETLVEYP----RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
Query: 308 FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK--VGNMDADDEQI 365
+P+ G + + DL V+ +P + + +D
Sbjct: 391 VEEPTEGKV--------EWDL--------TVAYKPQYIKAEYEGTVYELLSKID------ 428
Query: 366 YNASMMANAHSFISQLPDQYST-ELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEAT 423
S N++ + ++L +L R V+ LSGG+ QR+AIA ++++ I LLDE +
Sbjct: 429 ---SSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 485
Query: 424 SALDSESEKLVQEALERAMQG--RTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481
+ LD E V A+ M+ +T +++ H + I +V +G+ G +
Sbjct: 486 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPM 545
Query: 482 QTSDFYNRLFTMQNL---RPIDDSRTKASTVESTSTEQQ 517
+ NR + R D R +A+ S +Q
Sbjct: 546 GMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQ 584
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 906 NFSLQIEPGL-----KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
+F L++EPG + +VGP+G GK++ + +L +P EG + E++L
Sbjct: 355 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDL--- 403
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSL--PDGYDTVV 1018
V +P + K N + + + L P G +
Sbjct: 404 -----TVAYKPQYIKAEYEGTV-------YELLSKIDSSKLNSNFYKTELLKPLGIIDLY 451
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
LSGG+ QR+AIA TLL+ I LLDE ++ LD E + A+ L K+
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILIAHR 453
QLSGG+ QR+AIA A+++ DE +S LD V + R A +G+ V+++ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 454 MSTI-VNADMIAVV 466
++ + +D+I VV
Sbjct: 274 LAVLDYLSDVIHVV 287
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
QLSGG+ QR+AIA LL++ DE +S LD
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 39/241 (16%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI-LIDSLNIK-DLDLKSL 331
ILK S I G L G +G GK+T+++++ + ++G + L K +++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 332 RKNIGAVSQEPSLFTGSLMDNIKVGN-----------------MDADDEQIYNASMMANA 374
R++IG VS SL++ + G D DDE + A
Sbjct: 96 RQHIGFVSH-------SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE------IRNEA 142
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD---SESE 431
H + + S + Q LS G+KQR+ IARA+ P +L+LDE + LD ES
Sbjct: 143 HQLLKLVGX--SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 432 KLVQEALERAMQGRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490
+ ++L + I + H + I N I +++DGQ + G +L TS+ +R
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL-TSENXSRF 259
Query: 491 F 491
F
Sbjct: 260 F 260
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK--GIKEYNLRR 959
T+L S QI G K L G +GAGK+++L +L + G + + GK G Y+
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 960 LRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXK---KANIHDFISSLPDGYDT 1016
+R IG V S S+ G +I D I +
Sbjct: 95 VRQHIGFV-------SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLK 147
Query: 1017 VVGE--KGCQ----LSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+VG K Q LS G+KQR+ IAR L +P +++LDE + LD
Sbjct: 148 LVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPP---ILLLDEATSALDSESEKLVQEALERAM-Q 443
+LGQ LSGG+ QRI +A + K + +LDE T L E + + E L R + +
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 444 GRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFYNRLF 491
G TVI+I H + I NAD I + E G + TGT + + Y F
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKS 1074
+G+ LSGG+ QRI +A L KR + +LDE T L E R +V L L +
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1075 SSCGELASRTTQITVAHRLATVINSDVIV 1103
+ T I + H L + N+D I+
Sbjct: 859 N---------TVIVIEHNLDVIKNADHII 878
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSALDS-ESEKLVQEALERAMQGR 445
L + LSGG+ QRI +A I I +LDE T L ++E+L++ + G
Sbjct: 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517
Query: 446 TVILIAHRMSTIVNADMI 463
TVI++ H I NAD I
Sbjct: 518 TVIVVEHDEEVIRNADHI 535
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 27/224 (12%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLDL 328
D+ IL+G SL + G++ A++G +G GKST+ + +A Y+ + G ++ K DL
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-----TVEFKGKDL 67
Query: 329 KSLR------KNIGAVSQEP--------SLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+L + I Q P F + ++ ++ ++ +M
Sbjct: 68 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ + ++P+ T V SGG+K+R I + V P + +LDE+ S LD ++ K+V
Sbjct: 128 IALL-KMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 435 QEALERAMQG-RTVILIAH--RMSTIVNADMIAVVEDGQVTETG 475
+ + G R+ I++ H R+ + D + V+ G++ ++G
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 26/250 (10%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILI 947
+IK + S + +L SL + PG A++GP+G+GKS++ A L Y+ G +
Sbjct: 3 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 62
Query: 948 DGKGIKEYNLR-RLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDF 1006
GK + + R I + Q P+ +N + + + DF
Sbjct: 63 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQETLDRFDF 120
Query: 1007 -------ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
I+ L D + SGG+K+R I + + P + +LDE+ S LD ++
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMGSHS 1117
+V+ + +L S I V H R+ I D + V+ +G +V+ G
Sbjct: 181 LKVVADGVNSLRDGKRSF---------IIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF- 230
Query: 1118 TLVA--ESQG 1125
TLV E QG
Sbjct: 231 TLVKQLEEQG 240
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 27/224 (12%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLDL 328
D+ IL+G SL + G++ A++G +G GKST+ + +A Y+ + G ++ K DL
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-----TVEFKGKDL 86
Query: 329 KSLR------KNIGAVSQEP--------SLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+L + I Q P F + ++ ++ ++ +M
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ + ++P+ T V SGG+K+R I + V P + +LDE+ S LD ++ K+V
Sbjct: 147 IALL-KMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 435 QEALERAMQG-RTVILIAH--RMSTIVNADMIAVVEDGQVTETG 475
+ + G R+ I++ H R+ + D + V+ G++ ++G
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 26/250 (10%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILI 947
+IK + S + +L SL + PG A++GP+G+GKS++ A L Y+ G +
Sbjct: 22 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81
Query: 948 DGKGIKEYNLR-RLRSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDF 1006
GK + + R I + Q P+ +N + + + DF
Sbjct: 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQETLDRFDF 139
Query: 1007 -------ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
I+ L D + SGG+K+R I + + P + +LDE+ S LD ++
Sbjct: 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMGSHS 1117
+V+ + +L S I V H R+ I D + V+ +G +V+ G
Sbjct: 200 LKVVADGVNSLRDGKRSF---------IIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF- 249
Query: 1118 TLVA--ESQG 1125
TLV E QG
Sbjct: 250 TLVKQLEEQG 259
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 906 NFSLQIEPG-LK----VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
+F L++EPG +K + +VGP+G GK++ + L +P EG I E++L
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI--------EWDL--- 347
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSL--P----DGY 1014
V +P + K N + + + L P D Y
Sbjct: 348 -----TVAYKPQYIKADYEGTVY-------ELLSKIDASKLNSNFYKTELLKPLGIIDLY 395
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
D V E LSGG+ QR+AIA TLL+ I LLDE ++ LD E + A+ L K+
Sbjct: 396 DREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKN 451
Query: 1075 SSC 1077
Sbjct: 452 EKT 454
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 146/344 (42%), Gaps = 60/344 (17%)
Query: 200 AVMSILFGAIALTYAAPDMQ-VFNQAKAA---------GFEIFQVIQRKP-RISYSSKGK 248
AV+ L I + Y P + +F+Q K G+ + ++ +P I ++ G+
Sbjct: 219 AVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGE 278
Query: 249 ELEKIDGNIDIRDVCFAYPSRPDQLILKGFSL--------SIPAGKMVALVGSSGCGKST 300
+E I+ R+ YP ++K + I G+++ +VG +G GK+T
Sbjct: 279 RVE-----IE-RETLVTYPR-----LVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTT 327
Query: 301 VISLVARFYDPSNGDILID-SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD 359
+ +A +P+ G I D ++ K +K+ E +++ L+ I ++
Sbjct: 328 FVKXLAGVEEPTEGKIEWDLTVAYKPQYIKA--------DYEGTVY--ELLSKIDASKLN 377
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
++ Y ++ + D Y E+ + LSGG+ QR+AIA ++++ I LL
Sbjct: 378 SN---FYKTELLKPLG-----IIDLYDREVNE----LSGGELQRVAIAATLLRDADIYLL 425
Query: 420 DEATSALDSESEKLVQEALERAMQG--RTVILIAHRMSTI-VNADMIAVVEDGQVTETGT 476
DE ++ LD E V A+ + +T +++ H + I +D + V E G+ + G
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFE-GEPGKYGR 484
Query: 477 HHSLLQTSDFYNRLFTMQNL---RPIDDSRTKASTVESTSTEQQ 517
+ NR + R D R +A+ S +Q
Sbjct: 485 ALPPXGXREGXNRFLASIGITFRRDPDTGRPRANKEGSVKDREQ 528
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 35/204 (17%)
Query: 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPS---------------NGDILIDSL-NIKD 325
+ G +V +VG +G GKST + ++A P+ G+ L + +K+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
+++ + K V P G +++ +K + E++ A + N
Sbjct: 104 GEIRPVVKP-QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL---------- 152
Query: 386 STELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQ 443
+R +Q LSGG+ QR+AIA A+++N DE +S LD A+ R + +
Sbjct: 153 -----EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 444 GRTVILIAHRMSTI-VNADMIAVV 466
G++V+++ H ++ + +D+I VV
Sbjct: 208 GKSVLVVEHDLAVLDYLSDIIHVV 231
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 39/211 (18%)
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPN--------EGII-LIDGKGIKEYNLRRLR 961
++ G V +VGP+G GKS+ + +L PN +G+I G ++ Y +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 962 SQIGLV--QQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKAN----IHDFISSLPDGYD 1015
+I V Q L +++ + KKA+ + + + +L +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVI------------ELLKKADETGKLEEVVKALE--LE 149
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
V+ + LSGG+ QR+AIA LL+ DE +S LD A+ L+ +
Sbjct: 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 1076 SCGELASRTTQITVAHRLATVIN-SDVIVVM 1105
S + V H LA + SD+I V+
Sbjct: 210 SV---------LVVEHDLAVLDYLSDIIHVV 231
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++IRD+ Y D+ +L+ +++I G +V G +G GK+T++ ++ + P G+I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 317 LIDSLNIKDLDLKS--LRKNI---GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMM 371
+ + + I + K L + I +S E L + + +KV
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV---------------- 110
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
N + + L +L ++ +LS G +R+ +A ++ N I +LD+ A+D +S+
Sbjct: 111 -NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 432 KLVQEALERAMQGRTVILIAHR 453
V +++ ++ + +++I+ R
Sbjct: 170 HKVLKSILEILKEKGIVIISSR 191
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
++E +++ Y +P VL ++ IE G V GP+G GK+++L + + P +G
Sbjct: 10 KLEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLL-FSCSIRNNICYGNXXXXXXXXXXXXKKANI 1003
I+ +G I +++ +I + +E ++ S+ + + K N
Sbjct: 66 IIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYL--------KAVASLYGVKVNK 112
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE-RV 1062
++ + +L + +K +LS G +R+ +A TLL I +LD+ A+D +S+ +V
Sbjct: 113 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 1063 IVSALEALNPK 1073
+ S LE L K
Sbjct: 173 LKSILEILKEK 183
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E T L S ++ G + LVGP+GAGKS++LA + +G I G+ ++ ++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 960 LR-SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
L + L QQ+ F+ + + + + ++D +L D +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL--------TLHQHDKTRTELLNDVAGAL--ALDDKL 120
Query: 1019 GEKGCQLSGGQKQRIAIARTLLK-----RPA--IMLLDEATSALDAESERVIVSALEALN 1071
G QLSGG+ QR+ +A +L+ PA ++LLD+ ++LD + + L AL+
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS 180
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 21/217 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S + AG+++ LVG +G GKST+++ +A G I ++ L +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALH 74
Query: 335 IGAVSQEPS-LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+SQ+ + F + + + D ++ N A A L D+ LG+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------LDDK----LGRST 124
Query: 394 VQLSGGQKQRIAIARAIVKNPP-------ILLLDEATSALDSESEKLVQEALER-AMQGR 445
QLSGG+ QR+ +A +++ P +LLLD+ ++LD + + + L + QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGL 184
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLL 481
+++ +H ++ T+ +A +++ G++ +G +L
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E T L S ++ G + LVGP+GAGKS++LA +G I G+ ++ ++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATK 70
Query: 960 LR-SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
L + L QQ+ F+ + + + + ++D +L D +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL--------TLHQHDKTRTELLNDVAGAL--ALDDKL 120
Query: 1019 GEKGCQLSGGQKQRIAIARTLLK-----RPA--IMLLDEATSALDAESERVIVSALEALN 1071
G QLSGG+ QR+ +A +L+ PA ++LLDE ++LD + + L AL+
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S + AG+++ LVG +G GKST+++ A G I ++ L +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 335 IGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+SQ+ + F + + + D ++ N A A L D+ LG+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------LDDK----LGRST 124
Query: 394 VQLSGGQKQRIAIARAIVKNPP-------ILLLDEATSALDSESEKLVQEALER-AMQGR 445
QLSGG+ QR+ +A +++ P +LLLDE ++LD + + + L + QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGL 184
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLL 481
++ +H ++ T+ +A +++ G+ +G +L
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E T L S ++ G + LVGP+GAGKS++LA +G I G+ ++ ++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATK 70
Query: 960 LR-SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
L + L QQ+ F+ + + + + ++D +L D +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL--------TLHQHDKTRTELLNDVAGAL--ALDDKL 120
Query: 1019 GEKGCQLSGGQKQRIAIARTLLK-----RPA--IMLLDEATSALDAESERVIVSALEAL 1070
G QLSGG+ QR+ +A +L+ PA ++LLDE ++LD + + L AL
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S + AG+++ LVG +G GKST+++ A G I ++ L +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 335 IGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+SQ+ + F + + + D ++ N A A L D+ LG+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------LDDK----LGRST 124
Query: 394 VQLSGGQKQRIAIARAIVKNPP-------ILLLDEATSALDSESEKLVQEALER-AMQGR 445
QLSGG+ QR+ +A +++ P +LLLDE ++LD + + + L QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGL 184
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLL 481
++ +H ++ T+ +A +++ G+ +G +L
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 33/213 (15%)
Query: 264 FAYPSRPDQLILKGFSLSIPAGK-----MVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
F+YPS + F L++ G+ ++ ++G +G GK+T+I L+A P G I
Sbjct: 354 FSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I 410
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
LN+ K K G V Q LF + Q N +
Sbjct: 411 PKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRG------------QFLNPQFQTDVVK-- 453
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
P + + Q LSGG+ QR+AI A+ I L+DE ++ LDSE + + +
Sbjct: 454 ---PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 439 ERAM--QGRTVILIAHR--MSTIVNADMIAVVE 467
R + +T ++ H M+T + AD + V E
Sbjct: 511 RRFILHNKKTAFIVEHDFIMATYL-ADKVIVFE 542
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 284 AGKMVALVGSSGCGKSTVISLVA--------RFYDPSNGDILIDSLNIKDLD---LKSLR 332
G+++ LVG++G GKST + ++A RF DP +I +L K L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 333 KNIGAVSQE------PSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
+I A+ + P G + KVG + ++ + +I L Q
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQ---KVGEL----LKLRMEKSPEDVKRYIKIL--QLE 212
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
L + +LSGG+ QR AI + V+ + + DE +S LD + ++L + R++ T
Sbjct: 213 NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK-QRLNAAQIIRSLLAPT 271
Query: 447 --VILIAHRMSTI 457
VI + H +S +
Sbjct: 272 KYVICVEHDLSVL 284
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 39/185 (21%)
Query: 893 FNYPSRPEVTVLNNFSLQIEPGL-----KVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947
F+YPS + +F L +E G + ++G +G GK++++ LL P+EG
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG---- 407
Query: 948 DGKGIKEYNLRRLRSQI-----GLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKAN 1002
+ I + N+ +I G V+Q LF IR
Sbjct: 408 --QDIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQT------------- 449
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
D + L D ++ ++ LSGG+ QR+AI L I L+DE ++ LD+E +R+
Sbjct: 450 --DVVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE-QRI 504
Query: 1063 IVSAL 1067
I S +
Sbjct: 505 ICSKV 509
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 905 NNFSLQ----IEPGLKVALVGPSGAGKSSVLALLL--------RFYDP---NEGIILIDG 949
N+F L PG + LVG +G GKS+ L +L RF DP E I G
Sbjct: 90 NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRG 149
Query: 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI---CYGNXXXXXXXXXXXXKKA--NIH 1004
++ Y + L I + + + +NI G +K+ ++
Sbjct: 150 SELQNYFTKMLEDDIKAIIKPQYV------DNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+I L + V+ +LSGG+ QR AI + ++ + + DE +S LD +
Sbjct: 204 RYIKIL--QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 389 LGQRGVQLSGGQKQRIAIA---RAIVKNPPILLLDEATSALD-SESEKLVQEALERAMQG 444
LGQ +LSGG+ QRI +A R + + +LDE T+ L ++ E+L ++ ++ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 445 RTVILIAHRMSTIVNADMIAVVEDGQVTETG 475
TVI + H+M + +D + + G + G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGG 814
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 29/128 (22%)
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPA----IMLLDEATSAL---DAES-ERVIVSALEA 1069
+G+ +LSGG+ QRI +A T L+R + +LDE T+ L D E +R +V ++A
Sbjct: 724 LGQPATELSGGEAQRIKLA-TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 1070 LNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM------DKGEVVEMGSHSTLVAES 1123
N T I V H++ V SD ++ + D G +V G+ + VA++
Sbjct: 783 GN-------------TVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAE-VAQA 828
Query: 1124 QGVYSRLY 1131
G + Y
Sbjct: 829 AGSVTAPY 836
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVIS------LVARFYDPSN 313
L + P G M ++ G SG GKST++S L A F P N
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVN 557
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E T L S ++ G + LVGP+GAGKS++LA + +G I G+ ++ ++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 960 LR-SQIGLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVV 1018
L + L QQ+ F+ + + + + ++D +L D +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL--------TLHQHDKTRTELLNDVAGAL--ALDDKL 120
Query: 1019 GEKGCQLSGGQKQRIAIARTLLK-----RPA--IMLLDEATSALDAESERVIVSALEALN 1071
G QLSGG+ QR+ +A +L+ PA ++LLD+ +LD + + L AL+
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS 180
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S + AG+++ LVG +G GKST+++ +A G I ++ L +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALH 74
Query: 335 IGAVSQEPS-LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+SQ+ + F + + + D ++ N A A L D+ LG+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------LDDK----LGRST 124
Query: 394 VQLSGGQKQRIAIARAIVKNPP-------ILLLDEATSALDSESEKLVQEALER-AMQGR 445
QLSGG+ QR+ +A +++ P +LLLD+ +LD + + + L + QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGL 184
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLL 481
+++ +H ++ T+ +A +++ G++ +G +L
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL+ G VI+I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 456 TIVN-ADMIAVVEDGQVTETG 475
N + + V+DG++T +G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
LSGG K ++A+ARA+++N ILLLDE T+ LD+
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 857 APAFEILDRKTEIEPDAPESSESGRIKGR----IEFQNIKFNYP--SRPEVTVLNNFSLQ 910
A A+E L T++E PE +K + ++ N++F YP S+P++T +N Q
Sbjct: 640 AKAYEELS-NTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDIN---FQ 695
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
++A++GP+GAGKS+++ +L P G
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084
LSGG K ++A+AR +L+ I+LLDE T+ LD + +V+ L ++CG
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL-------NTCG-----I 596
Query: 1085 TQITVAH 1091
T IT++H
Sbjct: 597 TSITISH 603
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LSGGQK ++ +A +RP +++LDE T+ LD +S + AL+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 257 IDIRDVCFAYP--SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+ + ++ F YP S+P Q+ F S+ + +A++G +G GKST+I+++ P++G
Sbjct: 672 VKVTNMEFQYPGTSKP-QITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 315 DI 316
++
Sbjct: 729 EV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL+ G VI+I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 456 TIVN-ADMIAVVEDGQVTETG 475
N + + V+DG+ T +G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
LSGG K ++A+ARA+++N ILLLDE T+ LD+
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084
LSGG K ++A+AR +L+ I+LLDE T+ LD + +V+ L ++CG
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL-------NTCG-----I 596
Query: 1085 TQITVAH 1091
T IT++H
Sbjct: 597 TSITISH 603
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 857 APAFEILDRKTEIEPDAPESSESGRIKGR----IEFQNIKFNYP--SRPEVTVLNNFSLQ 910
A A+E L T++E PE +K + ++ N +F YP S+P++T +N Q
Sbjct: 640 AKAYEELS-NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDIN---FQ 695
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
++A++GP+GAGKS+++ +L P G
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LSGGQK ++ +A +RP +++LDE T+ LD +S + AL+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL+ G VI+I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 456 TIVN-ADMIAVVEDGQVTETG 475
N + + V+DG+ T +G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
LSGG K ++A+ARA+++N ILLLDE T+ LD+
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084
LSGG K ++A+AR +L+ I+LLDE T+ LD + +V+ L ++CG
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL-------NTCG-----I 590
Query: 1085 TQITVAH 1091
T IT++H
Sbjct: 591 TSITISH 597
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 857 APAFEILDRKTEIEPDAPESSESGRIKGR----IEFQNIKFNYP--SRPEVTVLNNFSLQ 910
A A+E L T++E PE +K + ++ N +F YP S+P++T +N Q
Sbjct: 634 AKAYEELS-NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDIN---FQ 689
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
++A++GP+GAGKS+++ +L P G
Sbjct: 690 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LSGGQK ++ +A +RP +++LDE T+ LD +S + AL+
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-Q 443
+LGQ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 444 GRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFYNRLFTMQNLR 497
G TV++I H + I AD I + GQ+ GT + + + + T + L+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH----TGRYLK 953
Query: 498 PI---DDSRTKA 506
PI D +R +A
Sbjct: 954 PILERDRARXQA 965
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLV 305
LK S+ IP G VA+ G SG GKST+++ V
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 32/133 (24%)
Query: 1005 DFISSLPD-------------GYDTVVGEKGCQLSGGQKQRIAIARTLLKRP---AIMLL 1048
DF +S+P GY + G+ LSGG+ QR+ +A L +R + +L
Sbjct: 814 DFFASIPKIKRKLETLYDVGLGYXKL-GQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 872
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM--- 1105
DE T+ L + ++ L L + + T + + H L + +D I+ +
Sbjct: 873 DEPTTGLHVDDIARLLDVLHRL---------VDNGDTVLVIEHNLDVIKTADYIIDLGPE 923
Query: 1106 --DK-GEVVEMGS 1115
D+ G++V +G+
Sbjct: 924 GGDRGGQIVAVGT 936
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTV 301
LK + IP GK+V L G SG GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 396 LSGGQKQRIAIARAIVKNPP--ILLLDEATSALDS-ESEKLVQEALERAMQGRTVILIAH 452
LSGG+ QRI +A I + +LDE + L ++++L+ G T+I++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 453 RMSTIVNADMI------AVVEDGQVTETGT 476
T + AD + A + G+V GT
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGT 594
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-Q 443
+LGQ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 444 GRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFYNRLFTMQNLR 497
G TV++I H + I AD I + GQ+ GT + + + + T + L+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH----TGRYLK 953
Query: 498 PI---DDSRTKA 506
PI D +R +A
Sbjct: 954 PILERDRARMQA 965
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLV 305
LK S+ IP G VA+ G SG GKST+++ V
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 32/133 (24%)
Query: 1005 DFISSLPD-------------GYDTVVGEKGCQLSGGQKQRIAIARTLLKRP---AIMLL 1048
DF +S+P GY +G+ LSGG+ QR+ +A L +R + +L
Sbjct: 814 DFFASIPKIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 872
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM--- 1105
DE T+ L + ++ L L + + T + + H L + +D I+ +
Sbjct: 873 DEPTTGLHVDDIARLLDVLHRL---------VDNGDTVLVIEHNLDVIKTADYIIDLGPE 923
Query: 1106 --DK-GEVVEMGS 1115
D+ G++V +G+
Sbjct: 924 GGDRGGQIVAVGT 936
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTV 301
LK + IP GK+V L G SG GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 396 LSGGQKQRIAIARAIVKNPP--ILLLDEATSALDS-ESEKLVQEALERAMQ--GRTVILI 450
LSGG+ QRI +A I + +LDE + L ++++L+ A ++M+ G T+I++
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI--ATLKSMRDLGNTLIVV 562
Query: 451 AHRMSTIVNADMI------AVVEDGQVTETGTHHSLLQTSD 485
H T++ AD + A + G+V GT ++ +
Sbjct: 563 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 603
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-Q 443
+LGQ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 444 GRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFYNRLFTMQNLR 497
G TV++I H + I AD I + GQ+ GT + + + + T + L+
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH----TGRYLK 651
Query: 498 PI---DDSRTKA 506
PI D +R +A
Sbjct: 652 PILERDRARMQA 663
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLV 305
LK S+ IP G VA+ G SG GKST+++ V
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 32/133 (24%)
Query: 1005 DFISSLPD-------------GYDTVVGEKGCQLSGGQKQRIAIARTLLKRP---AIMLL 1048
DF +S+P GY +G+ LSGG+ QR+ +A L +R + +L
Sbjct: 512 DFFASIPKIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM--- 1105
DE T+ L + ++ L L + + T + + H L + +D I+ +
Sbjct: 571 DEPTTGLHVDDIARLLDVLHRL---------VDNGDTVLVIEHNLDVIKTADYIIDLGPE 621
Query: 1106 --DK-GEVVEMGS 1115
D+ G++V +G+
Sbjct: 622 GGDRGGQIVAVGT 634
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTV 301
LK + IP GK+V L G SG GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 396 LSGGQKQRIAIARAIVKNPP--ILLLDEATSALDS-ESEKLVQEALERAMQGRTVILIAH 452
LSGG+ QRI +A I + +LDE + L ++++L+ G T+I++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 453 RMSTIVNADMI------AVVEDGQVTETGTHHSLLQ 482
T++ AD + A + G+V GT ++
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 275 LKGFSLSIPAGK-MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR- 332
K F L P ++ ++G +G GK+TV+ ++A P+ GD +S KD LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
K I +E L++ L + ++ + A F+ ++ T++ +R
Sbjct: 72 KEIYNYFKE--LYSNEL-------------KIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 393 GVQ-------------------LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
G + LSGG QR+ +A ++++ + + D+ +S LD
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 434 VQEALERAMQGRTVILIAHRM 454
+ +A+ ++ + VI++ H +
Sbjct: 177 MAKAIRELLKNKYVIVVDHDL 197
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVI--LIAH 452
LSGG+ Q++ IA + K + +LD+ +S LD E +V +A++R + R + +I H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 453 RMS 455
+S
Sbjct: 445 DLS 447
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 904 LNNFSLQIEPGLK-----VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
L +F L ++ G + ++GP+G GK++ +L+ +EG + + K I Y +
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE-KQILSYKPQ 337
Query: 959 RLRSQI-GLVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTV 1017
R+ G VQQ N K+ N+H + S +
Sbjct: 338 RIFPNYDGTVQQ--------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN----- 384
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LSGG+ Q++ IA TL K + +LD+ +S LD E ++ A++
Sbjct: 385 ------DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 917 VALVGPSGAGKSSVLALLL-----RFYDPN------EGIILIDGKGIKEYNLRRLRSQIG 965
+ ++G +G GK++VL +L F DPN E + GK I Y +++
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 966 LVQQEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQ- 1024
+V + + S G KK + + ++ T + K
Sbjct: 88 IVHKIQYVEYAS---KFLKGTVNEILTKIDERGKKDEVKELLNM------TNLWNKDANI 138
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070
LSGG QR+ +A +LL+ + + D+ +S LD + A+ L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 1001 ANIHDFISSLPD---GYDTVVGEKGCQLSGGQKQRIAIARTLLKRP---AIMLLDEATSA 1054
A +H ++ +L D GY +G+ LSGG+ QR+ +A L KR + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIV 1103
L + R +++ + L K + T I + H L + SD I+
Sbjct: 897 LHFDDIRKLLNVINGLVDKGN---------TVIVIEHNLDVIKTSDWII 936
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKN--PPILLLDEATSALDSESEKLVQEALERAMQ-GR 445
L + LSGG+ QRI +A I + +LDE + L + + E L R G
Sbjct: 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN 574
Query: 446 TVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSD 485
T+I++ H TI +AD I + G++ +G + LL+ D
Sbjct: 575 TLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKD 620
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 371 MANAHSFISQLPD---QYSTELGQRGVQLSGGQKQRIAIARAIVKNP---PILLLDEATS 424
+A H ++ L D Y LGQ LSGG+ QR+ +A + K + +LDE T+
Sbjct: 837 IAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTT 895
Query: 425 ALDSES-EKLVQEALERAMQGRTVILIAHRMSTIVNADMI 463
L + KL+ +G TVI+I H + I +D I
Sbjct: 896 GLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVIS 303
L+G +S P G + ++ G SG GKST+++
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVN 686
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L N +L++ G KV ++GP+G+GK+++L + P G I I+G +R++R+
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNY 73
Query: 964 IGLVQQEPLLFSCSIR-NNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKG 1022
I P + + N+I Y + + + +L G + ++ K
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVY------LYEELKGLDRDLFLEMLKALKLG-EEILRRKL 126
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+LS GQ + + L +P I+ LDE +DA VI
Sbjct: 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSL 344
G+ V ++G +G GK+T++ ++ P +G+I I+ + +++ +R I + P
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM-----EVRKIRNYIRYSTNLPEA 83
Query: 345 FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD-QYSTELGQRGV-QLSGGQKQ 402
+ ++G D +Y + F+ L + E+ +R + +LS GQ
Sbjct: 84 Y--------EIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135
Query: 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457
+ + A+ P I+ LDE +D+ ++ ++ G+ IL+ H + +
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 396 LSGGQKQRIAIARAI----VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIA 451
LSGG++ AIA V+ P +LDE +ALD + + L++ I+I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 452 HRMSTIVNADMI 463
HR T+ AD++
Sbjct: 389 HRKGTMEEADVL 400
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 396 LSGGQK------QRIAIARAIVKNP-PILLLDEATSALDSESEKLVQEALERAMQGRTVI 448
LSGG++ R+AIA A++ N ++LDE T LD + E + +I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 449 LIAHRMSTIVNAD-MIAVVEDGQVTE 473
+I H AD +I V +DG V++
Sbjct: 341 IITHHRELEDVADVIINVKKDGNVSK 366
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGIKEYN--LRR 959
V +NF +PG K+ L GPSG +LL DPN I+I G G+ + LRR
Sbjct: 133 VCSNFLCNSKPGDKIQLTGPSGK------IMLLPEEDPNATHIMIATGTGVAPFRGYLRR 186
Query: 960 L 960
+
Sbjct: 187 M 187
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 396 LSGGQKQRIAIARAI----VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIA 451
LSGG+K + +A +K P +LDE S LD + + + L+ + I+I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 452 HRMSTIVNADMI 463
H + AD++
Sbjct: 280 HNKIVMEAADLL 291
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGIKEYN--LRR 959
V +NF +PG K+ L GPSG +LL DPN I+I G G+ + LRR
Sbjct: 128 VCSNFLCNSKPGDKIQLTGPSGK------IMLLPEEDPNATHIMIATGTGVAPFRGYLRR 181
Query: 960 L 960
+
Sbjct: 182 M 182
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGIKEYN--LRR 959
V +NF +PG K+ L GPSG +LL DPN I+I G G+ + LRR
Sbjct: 128 VCSNFLCNSKPGDKIQLTGPSGK------IMLLPEEDPNATHIMIATGTGVAPFRGYLRR 181
Query: 960 L 960
+
Sbjct: 182 M 182
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 926 GKSSVLALLLRFYDPNEGIILIDGKGIKEY 955
GK S L +FYDP E +IDGK +K++
Sbjct: 14 GKESTNPLAFKFYDPEE---IIDGKPLKDH 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,254,417
Number of Sequences: 62578
Number of extensions: 1111546
Number of successful extensions: 3907
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3350
Number of HSP's gapped (non-prelim): 333
length of query: 1139
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1030
effective length of database: 8,152,335
effective search space: 8396905050
effective search space used: 8396905050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)